AlfalfaGEDB | Msa0520430

M. sativa cultivar zhongmu-4 / Msa0520430

KEGG: -
GO: GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0010033 GO:0010037 GO:0016787 GO:0017171 GO:0019538 GO:0030312 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0042221 GO:0042493 GO:0043170 GO:0043900 GO:0043901 GO:0044238 GO:0044464 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0070011 GO:0071704 GO:0071944 GO:0072347 GO:0080134 GO:0140096 GO:1900424 GO:1900425 GO:1901564 GO:1901700 GO:2000026 GO:2000038 GO:2000122
PFAM: PF05922.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0520430	XP_003603196.1	95.974	770	21	4	1	767	1	763	0.0	1494

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0520430	sp\|Q9LNU1\|CRSP_ARATH	57.572	766	321	3	1	766	1	762	0.0	874

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0520430	G7J8E0	95.974	770	21	4	1	767	1	763	0.0	1494

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0008850	Msa0520430	-0.802974	4.348420e-49	-8.615850e-47
Msa0036580	Msa0520430	0.820790	5.692806e-53	-8.615850e-47
Msa0041270	Msa0520430	0.849043	4.165896e-60	-8.615850e-47
Msa0065690	Msa0520430	-0.801125	1.043425e-48	-8.615850e-47
Msa0084680	Msa0520430	-0.807732	4.378084e-50	-8.615850e-47
Msa0103060	Msa0520430	-0.810886	9.224151e-51	-8.615850e-47
Msa0130710	Msa0520430	0.810008	1.426628e-50	-8.615850e-47
Msa0135740	Msa0520430	0.860731	1.683579e-63	-8.615850e-47
Msa0139270	Msa0520430	0.820041	8.457302e-53	-8.615850e-47
Msa0176620	Msa0520430	0.829940	3.884703e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0520430	MtrunA17_Chr3g0136151	95.974	770	21	4	1	767	1	763	0.0	1494
Msa0520430	MtrunA17_Chr3g0143251	79.948	768	149	5	1	766	1	765	0.0	1209
Msa0520430	MtrunA17_Chr3g0143241	74.684	474	115	5	1	472	1	471	0.0	694
Msa0520430	MtrunA17_Chr8g0354771	48.202	751	359	14	36	767	26	765	0.0	671
Msa0520430	MtrunA17_Chr8g0354741	49.201	626	306	7	143	767	21	635	0.0	577
Msa0520430	MtrunA17_Chr4g0026641	42.986	777	389	21	8	762	6	750	0.0	558
Msa0520430	MtrunA17_Chr5g0407701	40.128	780	414	20	9	767	4	751	0.0	554
Msa0520430	MtrunA17_Chr8g0369891	40.951	757	389	21	34	767	33	754	0.0	551
Msa0520430	MtrunA17_Chr4g0076611	42.857	714	370	13	69	765	1	693	0.0	537
Msa0520430	MtrunA17_Chr8g0377961	42.553	752	391	17	35	765	43	774	9.25e-177	526

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0520430	AT1G20160.1	57.572	766	321	3	1	766	1	762	0.0	874
Msa0520430	AT1G20160.2	59.577	710	285	2	57	766	16	723	0.0	859
Msa0520430	AT1G20150.1	50.983	763	346	10	20	766	21	771	0.0	764
Msa0520430	AT1G20160.3	57.534	511	214	2	1	511	1	508	0.0	577
Msa0520430	AT2G04160.1	42.386	788	401	18	11	767	7	772	0.0	556
Msa0520430	AT5G59100.1	40.566	742	398	17	32	765	31	737	3.51e-179	531
Msa0520430	AT5G59120.1	42.148	745	377	19	31	765	27	727	4.64e-175	520
Msa0520430	AT5G59090.1	41.489	752	372	21	31	765	28	728	5.39e-174	518
Msa0520430	AT5G59090.2	41.489	752	367	21	31	765	28	723	7.51e-174	517
Msa0520430	AT5G59090.3	41.489	752	370	22	31	765	28	726	7.42e-173	515

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Find 220 sgRNAs with CRISPR-Local

Find 428 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCGACGTGATTGCAAT+TGG	0.398776	3_4:+72980052	Msa0520430:CDS
AAACAGATCTTTGTTCAACG+AGG	0.714676	3_4:-72983936	None:intergenic
AAAGTCACGGTCAATAGTGG+TGG	0.655405	3_4:-72980185	None:intergenic
AACACAAATTAATAATATGA+AGG	0.529254	3_4:+72983463	Msa0520430:CDS
AACACACACAACACATAAGT+AGG	0.546999	3_4:-72984071	None:intergenic
AACCCACACGGCCTCGACAG+CGG	0.598995	3_4:+72979814	Msa0520430:CDS
AACTATAAGCACGGATTCTC+AGG	0.397156	3_4:+72978714	Msa0520430:CDS
AACTTCACACAACTCATTCT+TGG	0.315606	3_4:+72978823	Msa0520430:CDS
AAGATTGCCACCATAGGTGC+AGG	0.534542	3_4:-72982816	None:intergenic
AAGGTGGTTCCCCTGAATCG+AGG	0.666126	3_4:+72979891	Msa0520430:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGAGAATACTAATCATGAA+AGG	+	chr3_4:72978399-72978418	Msa0520430:exon	30.0%
CTAGTACATAACTATAAGCA+CGG	+	chr3_4:72978705-72978724	Msa0520430:CDS	30.0%
AATGGATAGAGTAATAGCTT+TGG	-	chr3_4:72979031-72979050	None:intergenic	30.0%
TATTCTTCATGTATTCGGTT+TGG	+	chr3_4:72979508-72979527	Msa0520430:intron	30.0%
AAATGCTTTCGCCAAAAATA+TGG	-	chr3_4:72980503-72980522	None:intergenic	30.0%
ACCAGACAAAAAGAAAGAAA+AGG	+	chr3_4:72980785-72980804	Msa0520430:intron	30.0%
CCAGACAAAAAGAAAGAAAA+GGG	+	chr3_4:72980786-72980805	Msa0520430:intron	30.0%
AAAGAAGAAAATCCAACACT+TGG	-	chr3_4:72980847-72980866	None:intergenic	30.0%
TGGATGAAATAGAGGAAAAT+GGG	+	chr3_4:72981009-72981028	Msa0520430:intron	30.0%
CTAAAAAATTGTATTGGAGG+AGG	+	chr3_4:72981094-72981113	Msa0520430:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	72978371	72984140	72978371	ID=Msa0520430;Name=Msa0520430
chr3_4	mRNA	72978371	72984140	72978371	ID=Msa0520430-mRNA-1;Parent=Msa0520430;Name=Msa0520430-mRNA-1;_AED=0.10;_eAED=0.10;_QI=43\|1\|1\|1\|1\|1\|9\|119\|767
chr3_4	exon	72978371	72978604	72978371	ID=Msa0520430-mRNA-1:exon:20252;Parent=Msa0520430-mRNA-1
chr3_4	exon	72978692	72978945	72978692	ID=Msa0520430-mRNA-1:exon:20253;Parent=Msa0520430-mRNA-1
chr3_4	exon	72979116	72979227	72979116	ID=Msa0520430-mRNA-1:exon:20254;Parent=Msa0520430-mRNA-1
chr3_4	exon	72979730	72980246	72979730	ID=Msa0520430-mRNA-1:exon:20255;Parent=Msa0520430-mRNA-1
chr3_4	exon	72982146	72982246	72982146	ID=Msa0520430-mRNA-1:exon:20256;Parent=Msa0520430-mRNA-1
chr3_4	exon	72982367	72982609	72982367	ID=Msa0520430-mRNA-1:exon:20257;Parent=Msa0520430-mRNA-1
chr3_4	exon	72982767	72982881	72982767	ID=Msa0520430-mRNA-1:exon:20258;Parent=Msa0520430-mRNA-1
chr3_4	exon	72982978	72983188	72982978	ID=Msa0520430-mRNA-1:exon:20259;Parent=Msa0520430-mRNA-1
chr3_4	exon	72983462	72984140	72983462	ID=Msa0520430-mRNA-1:exon:20260;Parent=Msa0520430-mRNA-1
chr3_4	five_prime_UTR	72978371	72978413	72978371	ID=Msa0520430-mRNA-1:five_prime_utr;Parent=Msa0520430-mRNA-1
chr3_4	CDS	72978414	72978604	72978414	ID=Msa0520430-mRNA-1:cds;Parent=Msa0520430-mRNA-1
chr3_4	CDS	72978692	72978945	72978692	ID=Msa0520430-mRNA-1:cds;Parent=Msa0520430-mRNA-1
chr3_4	CDS	72979116	72979227	72979116	ID=Msa0520430-mRNA-1:cds;Parent=Msa0520430-mRNA-1
chr3_4	CDS	72979730	72980246	72979730	ID=Msa0520430-mRNA-1:cds;Parent=Msa0520430-mRNA-1
chr3_4	CDS	72982146	72982246	72982146	ID=Msa0520430-mRNA-1:cds;Parent=Msa0520430-mRNA-1
chr3_4	CDS	72982367	72982609	72982367	ID=Msa0520430-mRNA-1:cds;Parent=Msa0520430-mRNA-1
chr3_4	CDS	72982767	72982881	72982767	ID=Msa0520430-mRNA-1:cds;Parent=Msa0520430-mRNA-1
chr3_4	CDS	72982978	72983188	72982978	ID=Msa0520430-mRNA-1:cds;Parent=Msa0520430-mRNA-1
chr3_4	CDS	72983462	72984021	72983462	ID=Msa0520430-mRNA-1:cds;Parent=Msa0520430-mRNA-1
chr3_4	three_prime_UTR	72984022	72984140	72984022	ID=Msa0520430-mRNA-1:three_prime_utr;Parent=Msa0520430-mRNA-1

Gene Sequence

>Msa0520430

ATGAAAGGAAATCCAAGTTTATTGCTATTATTTGAATTTCTATTCCTTTTCCTTGGAGAGTCAATATCATCCTCAGCTACTCAATCAGGAAATAACAATCAAGTTTATATTGTATATATGGGAGCCGCGAATTCAACAAATGGTTCCATTCGCAAAGATCATGCCCATGTTTTAAACACTGTGTTAAGAAGGAATGAAAAAGCTCTAGTACATAACTATAAGCACGGATTCTCAGGCTTCGCAGCTCGTTTATCAAAAAATGAAGCAGCCTCAATTGCTCAACAACCTGGAGTTGTGTCTGTGTTTCCAGAACCCATTCTGAAACTTCACACAACTCATTCTTGGGATTTCCTTAAGTTGCAAACTCATGTCAAAATTGACAGCACACTCTCCAATTCTTCTTCTCATTCATCGTCGGACATCGTAATCGGCATGTTAGACTCAGGTATATGGCCAGAAGCAACAAGTTTTTCGGACAATGGAATGGATCCTATTCCACCCGGTTGGAAAGGCACCTGCATGACATCAAATGACTTCAACTCATCTAATTGTAATAGGAAGATAATAGGAGCAAGGTATTACCCTAACCTTGATGGGGATAATCGTGTGGCGGCCACAACAAGGGATACAGTTGGGCATGGAACCCACACGGCCTCGACAGCGGCAGGGAATGCCGTGAGTGGTGCTTCATACTATGGTCTCGCGGAAGGGACAGCAAAAGGTGGTTCCCCTGAATCGAGGTTGGCGATCTACAAAGTGTGCAGCAATATTGGTTGCTCTGGCTCTGCCATACTTGCAGCGTTTGACGATGCAATTTCTGATGGAGTTGATGTGCTTTCGCTCTCCCTTGGTAGGGGTCCGAGTTCCCAACCTGACTTGAAAACCGACGTGATTGCAATTGGAGCGTTCCATGCCGTGGAGCACGGCATCGTGGTGGTTTGCTCCGCTGGGAATTCTGGTCCGGGGCTAAGTACTGTTGTTAATGATGCACCTTGGATATTAACGGTTGCTGCCACCACTATTGACCGTGACTTTCAGTCTAACGTTGTCTTGGGTAATAACAAAGTTGTCAAGGGTCAAGCCATAAATTTCTCCCCTCTTTCAAAATCTGCTGATTATCCATTGATAACCGGAAAGTCTGCCAAGACAATTACTGCTGACTTAACTGAAGCAAGTCAGTGTCATCCAAGTTCATTAGATAAGAAAAAAGTTGAAGGAAATATTGTCATCTGTGATGGCATAGATGGTGATTATTCAACCGATGAAAAAATTAGGACGGTGCAAGAGGCGGGTGGATTAGGTCTTGTTCATATTACTGACCAAGATGGAGCTGTGGCAAATATTTATGCAGACTTCCCAGCAACGGTGGTAAGATCAAAAGATGCTGTCACACTCCTCCAATACCTCAATTCAACGAGCAATCCAGTAGCAACAATTCTACCAACAGTCACAGTCATAGATTATAAGCCTGCACCTATGGTGGCAATCTTTTCAAGTAGAGGACCTTCAGCTCTTTCAAAGAATATTCTCAAGCCTGATATTGCAGCACCAGGTGTTACCATTCTTGCAGCATGGATTGGAAATGATGACGAAAATGTTCCAAAGGGAAAAAAACCCTTGCCATATAAACTTGAAACCGGAACTTCCATGTCATGCCCACATGTTTCGGGCCTTGCAGGCAGCATTAAATCTAGGAACCCCACTTGGAGTGCCTCTGCAATCAGATCAGCCATCATGACATCCGCAACACAAATTAATAATATGAAGGCTCCCATTACTACAGATTTAGGGTCAGTTGCCACACCTTATGACTATGGAGCAGGGGACATAACAACAATTGAATCATTCCAACCAGGGCTCGTTTATGAAACTAGCACCATTGACTACTTGAACTACTTGTGTTACATAGGATACAACACAACCACTATTAAGGTTATTTCAAAAACTGTCCCTGATAGTTTCAACTGCCCCAAGGAATCGACTCCTGATCATATTTCCAATATCAATTATCCTTCCATAGCAATCTCCAACTTCACTGGGAAAGAAACTGTGAATGTGAGTAGAACTGTTACAAATGTTGGTGAAGAGGATGAAGTAGCCTACTCCGCCATAGTTAATGCTCCTAGTGGTGTGAAAGTTCAGCTGATTCCAGAGAAACTACAATTTACAAAAAGCAATAAAAATCAAAGCTACCAAGCTATTTTCTCTACTACTTTAACCTCGTTGAACAAAGATCTGTTTGGATCCATTACATGGAGTAATGGTAAATATAGTGTTCGAAGTCCTTTTGTACTAACTATGTAG

Protein sequence

>Msa0520430

MKGNPSLLLLFEFLFLFLGESISSSATQSGNNNQVYIVYMGAANSTNGSIRKDHAHVLNTVLRRNEKALVHNYKHGFSGFAARLSKNEAASIAQQPGVVSVFPEPILKLHTTHSWDFLKLQTHVKIDSTLSNSSSHSSSDIVIGMLDSGIWPEATSFSDNGMDPIPPGWKGTCMTSNDFNSSNCNRKIIGARYYPNLDGDNRVAATTRDTVGHGTHTASTAAGNAVSGASYYGLAEGTAKGGSPESRLAIYKVCSNIGCSGSAILAAFDDAISDGVDVLSLSLGRGPSSQPDLKTDVIAIGAFHAVEHGIVVVCSAGNSGPGLSTVVNDAPWILTVAATTIDRDFQSNVVLGNNKVVKGQAINFSPLSKSADYPLITGKSAKTITADLTEASQCHPSSLDKKKVEGNIVICDGIDGDYSTDEKIRTVQEAGGLGLVHITDQDGAVANIYADFPATVVRSKDAVTLLQYLNSTSNPVATILPTVTVIDYKPAPMVAIFSSRGPSALSKNILKPDIAAPGVTILAAWIGNDDENVPKGKKPLPYKLETGTSMSCPHVSGLAGSIKSRNPTWSASAIRSAIMTSATQINNMKAPITTDLGSVATPYDYGAGDITTIESFQPGLVYETSTIDYLNYLCYIGYNTTTIKVISKTVPDSFNCPKESTPDHISNINYPSIAISNFTGKETVNVSRTVTNVGEEDEVAYSAIVNAPSGVKVQLIPEKLQFTKSNKNQSYQAIFSTTLTSLNKDLFGSITWSNGKYSVRSPFVLTM*