AlfalfaGEDB | Msa0242390

M. sativa cultivar zhongmu-4 / Msa0242390

KEGG: -
GO: GO:0001871 GO:0002215 GO:0002376 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009814 GO:0009817 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:0098588 GO:0098805
PFAM: PF00332.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242390	AAV66071.1	100.000	370	0	0	1	370	1	370	0.0	758

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242390	sp\|Q03467\|E13B_PEA	91.644	371	29	2	1	370	1	370	0.0	701

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242390	Q5RLY0	100.000	370	0	0	1	370	1	370	0.0	758

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012820	Msa0242390	0.812375	4.377077e-51	-8.615850e-47
Msa0036580	Msa0242390	0.855578	5.742174e-62	-8.615850e-47
Msa0048950	Msa0242390	0.806622	7.521405e-50	-8.615850e-47
Msa0059880	Msa0242390	0.842535	2.437725e-58	-8.615850e-47
Msa0061600	Msa0242390	0.848194	7.159435e-60	-8.615850e-47
Msa0093530	Msa0242390	0.824542	7.627930e-54	-8.615850e-47
Msa0106120	Msa0242390	0.838357	3.017192e-57	-8.615850e-47
Msa0106130	Msa0242390	0.840602	7.878862e-58	-8.615850e-47
Msa0126960	Msa0242390	0.824621	7.310902e-54	-8.615850e-47
Msa0139270	Msa0242390	0.851397	9.112027e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242390	MtrunA17_Chr2g0294601	97.297	370	10	0	1	370	25	394	0.0	742
Msa0242390	MtrunA17_Chr2g0294591	76.945	347	76	2	24	370	20	362	0.0	541
Msa0242390	MtrunA17_Chr4g0038981	54.819	332	141	4	17	347	5	328	3.11e-120	350
Msa0242390	MtrunA17_Chr4g0039071	55.312	320	138	4	30	346	19	336	9.70e-120	351
Msa0242390	MtrunA17_Chr4g0038971	54.518	332	142	4	17	347	5	328	5.97e-116	340
Msa0242390	MtrunA17_Chr4g0038961	53.916	332	144	4	17	347	5	328	4.56e-114	335
Msa0242390	MtrunA17_Chr4g0039011	51.754	342	155	5	10	349	17	350	3.44e-113	334
Msa0242390	MtrunA17_Chr4g0038941	54.375	320	135	6	30	347	47	357	9.24e-110	325
Msa0242390	MtrunA17_Chr1g0174261	53.546	282	127	3	64	343	1	280	3.31e-101	303
Msa0242390	MtrunA17_Chr4g0039021	49.664	298	139	6	55	347	1	292	4.48e-94	283

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242390	AT4G16260.1	61.494	348	125	5	13	356	1	343	1.09e-151	431
Msa0242390	AT4G16260.2	63.636	319	108	4	41	356	1	314	1.41e-142	407
Msa0242390	AT3G57240.1	56.875	320	127	6	30	347	30	340	9.23e-115	337
Msa0242390	AT3G57270.1	51.524	328	152	4	23	347	16	339	7.84e-111	327
Msa0242390	AT3G57260.1	50.440	341	156	5	12	347	6	338	1.76e-109	324
Msa0242390	AT3G57260.2	50.440	341	156	5	12	347	22	354	2.79e-109	324
Msa0242390	AT5G56590.1	38.024	334	187	8	34	353	25	352	9.96e-76	243
Msa0242390	AT5G20390.1	39.873	316	179	6	31	341	29	338	1.33e-75	238
Msa0242390	AT2G16230.1	40.308	325	185	6	31	347	21	344	2.31e-71	231
Msa0242390	AT5G20340.1	38.924	316	182	6	31	341	39	348	1.10e-70	225

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Find 109 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAAGTATATTGCAGT+TGG	0.537070	2_2:+18543920	Msa0242390:CDS
AAACAAAAGAAGTACCCATT+TGG	0.414004	2_2:+18544580	Msa0242390:CDS
AAACTTATTTGATGCTATGT+TGG	0.449549	2_2:+18544300	Msa0242390:CDS
AAAGAAATGTATTGAATTTC+TGG	0.164011	2_2:+18543888	Msa0242390:CDS
AAATCTTCATGATCAAATCA+AGG	0.476242	2_2:+18544033	Msa0242390:CDS
AACAATCCCAATAGAAGGAG+AGG	0.583975	2_2:-18541548	None:intergenic
AACCGATCCCAGTGTTATCT+AGG	0.365306	2_2:-18544339	None:intergenic
AACTCATTCCCTCCATCTAA+AGG	0.483297	2_2:+18544088	Msa0242390:CDS
AAGAAGTACCCATTTGGATT+TGG	0.328985	2_2:+18544586	Msa0242390:CDS
AAGGAAGAGATATATCACGC+GGG	0.748768	2_2:-18544222	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTCTATCTTCTATATAGAGA+TGG	+	chr2_2:18541604-18541623	Msa0242390:intron	30.0%
GACATTTATTTCGAAACGAA+GGG	-	chr2_2:18542235-18542254	None:intergenic	30.0%
ATAATGCACAATCCATTAAG+AGG	+	chr2_2:18542857-18542876	Msa0242390:intron	30.0%
GAGTTAGACCATCTATAATA+CGG	+	chr2_2:18543111-18543130	Msa0242390:intron	30.0%
TAAAAGAACCTTTAGATGGA+GGG	-	chr2_2:18544099-18544118	None:intergenic	30.0%
ATACCAAGTATCCAATGAAA+GGG	-	chr2_2:18544147-18544166	None:intergenic	30.0%
TATACCAAGTATCCAATGAA+AGG	-	chr2_2:18544148-18544167	None:intergenic	30.0%
TACCAACATGGCTAAAATAA+GGG	-	chr2_2:18544201-18544220	None:intergenic	30.0%
TTACCAACATGGCTAAAATA+AGG	-	chr2_2:18544202-18544221	None:intergenic	30.0%
ATTTGATGCTATGTTGGATT+CGG	+	chr2_2:18544306-18544325	Msa0242390:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	18541464	18544892	18541464	ID=Msa0242390;Name=Msa0242390
chr2_2	mRNA	18541464	18544892	18541464	ID=Msa0242390-mRNA-1;Parent=Msa0242390;Name=Msa0242390-mRNA-1;_AED=0.01;_eAED=0.01;_QI=39\|1\|1\|1\|0\|0.5\|2\|214\|370
chr2_2	exon	18541464	18541596	18541464	ID=Msa0242390-mRNA-1:exon:7552;Parent=Msa0242390-mRNA-1
chr2_2	exon	18543660	18544892	18543660	ID=Msa0242390-mRNA-1:exon:7553;Parent=Msa0242390-mRNA-1
chr2_2	five_prime_UTR	18541464	18541502	18541464	ID=Msa0242390-mRNA-1:five_prime_utr;Parent=Msa0242390-mRNA-1
chr2_2	CDS	18541503	18541596	18541503	ID=Msa0242390-mRNA-1:cds;Parent=Msa0242390-mRNA-1
chr2_2	CDS	18543660	18544678	18543660	ID=Msa0242390-mRNA-1:cds;Parent=Msa0242390-mRNA-1
chr2_2	three_prime_UTR	18544679	18544892	18544679	ID=Msa0242390-mRNA-1:three_prime_utr;Parent=Msa0242390-mRNA-1

Gene Sequence

>Msa0242390

ATGCCTTCTTTCTTTGCTCCAACCAGGAGGTTCTCCTTGGCTTCTCCTCTCCTTCTATTGGGATTGTTCACAATAAACCTCATTCCCACAGCAGATGCTCAAATAGGAGTATGTTATGGTATGATGGGAAACAATCTACCACCGGCAAACGAAGTTATAGATCTCTACAAAGCAAACAATATCAAGAGAATGAGACTCTATGATCCTAATCAAGCTGCTCTAAATGCATTAAGAAATTCAGGCATTGAACTCATTCTTGGTGTGCCTAATTCCGACCTTCAAAGCCTAGCCACCAACTCTGATAATGCACGTCAATGGGTACAAAGAAATGTATTGAATTTCTGGCCTAGTGTCAAAATCAAGTATATTGCAGTTGGTAATGAAGTGAGTCCAGTTGGAGGCTCTTCTTGGCTAGCACAATATGTTCTACCTGCCACCCAAAATATATATCAAGCGATAAGAGCGAAAAATCTTCATGATCAAATCAAGGTTTCAACCGCTATTGACATGACCCTTATTGGAAACTCATTCCCTCCATCTAAAGGTTCTTTTAGAAATGATGTTAGGGCATACCTAGACCCTTTCATTGGATACTTGGTATATGCAGGTGCACCTTTACTTGTCAATGTTTACCCTTATTTTAGCCATGTTGGTAACCCGCGTGATATATCTCTTCCTTATGCTCTTTTCACTTCACCGGGTGTTATGGTACAAGATGGTCCAAATGGGTACCAAAACTTATTTGATGCTATGTTGGATTCGGTGCATGCAGCCCTAGATAACACTGGGATCGGTTGGGTGAATGTTGTTGTATCTGAGAGTGGTTGGCCCTCTGATGGAGGGGCGGCTACTTCATATGACAACGCACGTATTTACCTTGATAATTTGATTCGTCATGTTGGTAAAGGTACTCCACGAAGGCCTTGGGCAACAGAAACTTATATTTTTGCTATGTTTGATGAGAACCAAAAGAGTCCAGAATTGGAGAAACATTTTGGAGTGTTTTATCCTAATAAACAAAAGAAGTACCCATTTGGATTTGGTGGGGAAAGAAATGGGGAAATTGTCAATGGTGACTTCAATGCAACTATTTCTCTTAAGAGTGACATGTAA

Protein sequence

>Msa0242390

MPSFFAPTRRFSLASPLLLLGLFTINLIPTADAQIGVCYGMMGNNLPPANEVIDLYKANNIKRMRLYDPNQAALNALRNSGIELILGVPNSDLQSLATNSDNARQWVQRNVLNFWPSVKIKYIAVGNEVSPVGGSSWLAQYVLPATQNIYQAIRAKNLHDQIKVSTAIDMTLIGNSFPPSKGSFRNDVRAYLDPFIGYLVYAGAPLLVNVYPYFSHVGNPRDISLPYALFTSPGVMVQDGPNGYQNLFDAMLDSVHAALDNTGIGWVNVVVSESGWPSDGGAATSYDNARIYLDNLIRHVGKGTPRRPWATETYIFAMFDENQKSPELEKHFGVFYPNKQKKYPFGFGGERNGEIVNGDFNATISLKSDM*