AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0242390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0242390 MtrunA17_Chr2g0294601 97.297 370 10 0 1 370 25 394 0.0 742
Msa0242390 MtrunA17_Chr2g0294591 76.945 347 76 2 24 370 20 362 0.0 541
Msa0242390 MtrunA17_Chr4g0038981 54.819 332 141 4 17 347 5 328 3.11e-120 350
Msa0242390 MtrunA17_Chr4g0039071 55.312 320 138 4 30 346 19 336 9.70e-120 351
Msa0242390 MtrunA17_Chr4g0038971 54.518 332 142 4 17 347 5 328 5.97e-116 340
Msa0242390 MtrunA17_Chr4g0038961 53.916 332 144 4 17 347 5 328 4.56e-114 335
Msa0242390 MtrunA17_Chr4g0039011 51.754 342 155 5 10 349 17 350 3.44e-113 334
Msa0242390 MtrunA17_Chr4g0038941 54.375 320 135 6 30 347 47 357 9.24e-110 325
Msa0242390 MtrunA17_Chr1g0174261 53.546 282 127 3 64 343 1 280 3.31e-101 303
Msa0242390 MtrunA17_Chr4g0039021 49.664 298 139 6 55 347 1 292 4.48e-94 283
Msa0242390 MtrunA17_Chr7g0250301 43.598 328 169 7 22 345 1 316 2.26e-81 251
Msa0242390 MtrunA17_Chr5g0439251 43.077 325 170 9 30 343 20 340 2.98e-74 238
Msa0242390 MtrunA17_Chr2g0294581 64.516 186 54 4 24 206 66 242 5.05e-70 221
Msa0242390 MtrunA17_Chr2g0294581 76.829 82 18 1 267 347 203 284 2.73e-37 135
Msa0242390 MtrunA17_Chr6g0487261 36.578 339 200 8 35 363 27 360 6.08e-70 227
Msa0242390 MtrunA17_Chr1g0177171 39.375 320 179 8 35 343 38 353 3.44e-69 225
Msa0242390 MtrunA17_Chr8g0389741 37.117 326 191 7 35 350 28 349 6.02e-69 224
Msa0242390 MtrunA17_Chr4g0003281 38.272 324 191 6 36 351 41 363 7.47e-68 219
Msa0242390 MtrunA17_Chr3g0119541 40.841 333 180 10 33 352 24 352 2.12e-67 216
Msa0242390 MtrunA17_Chr4g0064021 35.174 344 200 10 36 367 27 359 1.13e-66 215
Msa0242390 MtrunA17_Chr4g0034901 38.596 342 196 9 17 347 10 348 8.91e-66 215
Msa0242390 MtrunA17_Chr4g0043851 37.143 350 210 7 8 349 5 352 9.99e-65 211
Msa0242390 MtrunA17_Chr3g0144531 37.318 343 201 9 17 348 9 348 3.22e-64 211
Msa0242390 MtrunA17_Chr2g0321511 34.530 362 215 10 17 362 11 366 1.15e-63 207
Msa0242390 MtrunA17_Chr7g0250321 41.463 287 161 4 13 298 6 286 1.28e-63 204
Msa0242390 MtrunA17_Chr1g0189111 37.309 327 196 7 28 347 24 348 1.40e-63 208
Msa0242390 MtrunA17_Chr8g0339191 35.673 342 203 10 22 350 17 354 3.29e-63 209
Msa0242390 MtrunA17_Chr7g0234821 34.545 330 200 9 34 350 25 351 3.24e-62 206
Msa0242390 MtrunA17_Chr1g0161011 38.081 344 200 7 17 349 6 347 1.36e-61 205
Msa0242390 MtrunA17_Chr4g0026321 36.025 322 196 7 36 349 30 349 1.91e-61 202
Msa0242390 MtrunA17_Chr1g0146831 37.861 346 199 10 35 370 31 370 4.96e-61 201
Msa0242390 MtrunA17_Chr1g0155001 36.364 330 200 7 31 351 20 348 6.98e-61 201
Msa0242390 MtrunA17_Chr7g0223961 38.199 322 183 12 35 347 23 337 8.93e-59 197
Msa0242390 MtrunA17_Chr5g0434591 35.714 364 219 9 18 369 5 365 2.06e-58 197
Msa0242390 MtrunA17_Chr4g0069801 34.463 354 217 9 9 352 4 352 1.14e-56 192
Msa0242390 MtrunA17_Chr4g0075031 35.780 327 195 8 35 349 45 368 2.12e-56 192
Msa0242390 MtrunA17_Chr4g0046311 33.828 337 203 10 31 351 19 351 1.07e-55 189
Msa0242390 MtrunA17_Chr3g0110371 35.112 356 213 10 17 359 5 355 1.48e-54 186
Msa0242390 MtrunA17_Chr3g0121271 33.333 345 214 9 15 347 8 348 8.60e-54 185
Msa0242390 MtrunA17_Chr2g0285901 36.196 326 193 9 33 346 18 340 6.55e-53 180
Msa0242390 MtrunA17_Chr8g0378621 33.978 362 221 10 13 363 7 361 3.61e-52 180
Msa0242390 MtrunA17_Chr2g0290821 33.841 328 206 6 31 348 24 350 1.06e-51 179
Msa0242390 MtrunA17_Chr7g0253091 31.818 352 226 7 17 358 10 357 2.43e-51 178
Msa0242390 MtrunA17_Chr8g0383311 31.790 324 212 5 35 350 43 365 2.77e-51 178
Msa0242390 MtrunA17_Chr3g0138741 32.967 364 223 10 5 355 4 359 1.19e-50 176
Msa0242390 MtrunA17_Chr4g0043511 36.310 336 197 12 30 354 57 386 1.65e-49 174
Msa0242390 MtrunA17_Chr4g0076581 31.909 351 226 8 8 348 6 353 5.06e-49 172
Msa0242390 MtrunA17_Chr1g0148391 32.378 349 221 8 17 355 10 353 8.51e-49 171
Msa0242390 MtrunA17_Chr3g0129341 31.461 356 223 10 10 350 5 354 1.65e-48 171
Msa0242390 MtrunA17_Chr4g0062771 31.268 355 229 8 17 358 14 366 5.66e-48 169
Msa0242390 MtrunA17_Chr6g0461601 32.298 322 204 6 35 344 26 345 4.63e-47 166
Msa0242390 MtrunA17_Chr3g0105981 31.611 329 214 8 28 348 20 345 2.15e-44 158
Msa0242390 MtrunA17_Chr2g0306311 27.394 376 235 6 14 351 6 381 6.54e-42 153
Msa0242390 MtrunA17_Chr5g0436361 33.220 295 178 12 60 343 62 348 2.52e-35 132
Msa0242390 MtrunA17_Chr4g0018861 57.778 90 34 3 258 343 82 171 5.66e-27 106
Msa0242390 MtrunA17_Chr4g0018861 56.790 81 32 1 17 97 7 84 5.56e-24 98.6
Msa0242390 MtrunA17_Chr4g0018771 57.955 88 35 2 258 343 86 173 2.25e-26 105
Msa0242390 MtrunA17_Chr4g0018771 66.667 63 21 0 35 97 26 88 1.12e-23 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0242390 AT4G16260.1 61.494 348 125 5 13 356 1 343 1.09e-151 431
Msa0242390 AT4G16260.2 63.636 319 108 4 41 356 1 314 1.41e-142 407
Msa0242390 AT3G57240.1 56.875 320 127 6 30 347 30 340 9.23e-115 337
Msa0242390 AT3G57270.1 51.524 328 152 4 23 347 16 339 7.84e-111 327
Msa0242390 AT3G57260.1 50.440 341 156 5 12 347 6 338 1.76e-109 324
Msa0242390 AT3G57260.2 50.440 341 156 5 12 347 22 354 2.79e-109 324
Msa0242390 AT5G56590.1 38.024 334 187 8 34 353 25 352 9.96e-76 243
Msa0242390 AT5G20390.1 39.873 316 179 6 31 341 29 338 1.33e-75 238
Msa0242390 AT2G16230.1 40.308 325 185 6 31 347 21 344 2.31e-71 231
Msa0242390 AT5G20340.1 38.924 316 182 6 31 341 39 348 1.10e-70 225
Msa0242390 AT5G20330.1 39.748 317 180 6 30 341 29 339 7.31e-70 223
Msa0242390 AT2G26600.1 35.625 320 197 6 36 347 35 353 1.97e-69 223
Msa0242390 AT1G33220.1 38.245 319 185 7 11 324 11 322 1.86e-67 216
Msa0242390 AT3G15800.1 36.578 339 203 8 36 364 44 380 7.49e-67 217
Msa0242390 AT4G26830.2 37.243 341 197 9 30 359 24 358 5.12e-66 216
Msa0242390 AT4G26830.1 36.620 355 207 10 16 359 7 354 7.11e-66 216
Msa0242390 AT2G05790.1 39.024 328 187 8 33 350 23 347 8.85e-66 216
Msa0242390 AT5G55180.1 38.485 330 182 10 35 350 27 349 1.43e-65 215
Msa0242390 AT5G55180.2 38.485 330 182 10 35 350 27 349 1.68e-65 215
Msa0242390 AT5G42720.1 36.812 345 206 8 19 352 8 351 6.41e-65 213
Msa0242390 AT5G20560.1 36.308 325 196 7 18 337 18 336 1.66e-64 209
Msa0242390 AT4G29360.1 39.755 327 185 7 33 350 25 348 1.74e-64 214
Msa0242390 AT4G29360.2 39.755 327 185 7 33 350 35 358 1.87e-64 214
Msa0242390 AT4G34480.2 39.053 338 193 8 22 348 11 346 2.92e-64 209
Msa0242390 AT1G77790.1 38.012 342 195 8 10 343 7 339 2.46e-63 206
Msa0242390 AT4G34480.1 39.053 338 193 8 22 348 11 346 1.78e-62 208
Msa0242390 AT1G32860.1 36.810 326 192 8 34 348 28 350 1.79e-62 206
Msa0242390 AT5G42100.2 38.710 341 189 10 19 346 14 347 4.75e-62 205
Msa0242390 AT5G42100.1 38.710 341 189 10 19 346 14 347 4.94e-62 205
Msa0242390 AT2G01630.2 36.765 340 198 8 32 359 20 354 4.21e-60 199
Msa0242390 AT5G24318.4 37.572 346 195 11 16 346 6 345 8.69e-60 197
Msa0242390 AT2G01630.3 36.765 340 198 8 32 359 20 354 1.82e-59 199
Msa0242390 AT5G24318.2 37.572 346 195 11 16 346 6 345 8.85e-59 197
Msa0242390 AT2G01630.1 36.765 340 198 8 32 359 20 354 9.12e-59 198
Msa0242390 AT5G24318.1 37.572 346 195 11 16 346 6 345 1.24e-58 197
Msa0242390 AT4G18340.2 35.775 355 206 10 8 348 7 353 2.13e-58 194
Msa0242390 AT1G77780.1 37.179 312 186 7 36 343 25 330 3.02e-58 193
Msa0242390 AT4G18340.1 35.904 376 221 11 8 368 7 377 3.20e-58 194
Msa0242390 AT3G61810.1 36.503 326 187 8 35 348 55 372 5.61e-58 193
Msa0242390 AT1G11820.1 34.848 330 200 8 32 349 41 367 1.11e-57 192
Msa0242390 AT3G07320.1 34.139 331 196 9 36 350 26 350 1.20e-57 194
Msa0242390 AT2G27500.2 33.127 323 207 6 35 349 29 350 2.07e-57 191
Msa0242390 AT2G27500.1 33.127 323 207 6 35 349 29 350 4.61e-57 191
Msa0242390 AT1G11820.3 34.848 330 200 8 32 349 41 367 1.73e-56 192
Msa0242390 AT1G11820.2 34.848 330 200 8 32 349 41 367 3.63e-56 192
Msa0242390 AT1G30080.2 34.000 350 215 9 10 346 7 353 5.93e-56 188
Msa0242390 AT5G58090.1 34.132 334 207 8 33 356 20 350 6.44e-56 190
Msa0242390 AT1G30080.1 34.286 350 214 9 10 346 7 353 1.06e-55 188
Msa0242390 AT1G66250.1 36.391 327 194 7 29 343 24 348 2.21e-54 187
Msa0242390 AT5G18220.1 31.564 358 234 6 9 358 4 358 1.03e-53 184
Msa0242390 AT4G17180.1 34.018 341 206 8 20 348 7 340 1.40e-53 184
Msa0242390 AT2G26600.2 36.154 260 157 6 96 347 1 259 3.62e-53 178
Msa0242390 AT3G46570.1 39.466 337 185 13 22 346 14 343 8.21e-53 179
Msa0242390 AT4G14080.1 32.727 330 207 9 33 350 40 366 2.26e-51 178
Msa0242390 AT2G19440.2 32.448 339 216 8 35 363 21 356 3.61e-51 177
Msa0242390 AT2G19440.1 32.448 339 216 8 35 363 21 356 3.61e-51 177
Msa0242390 AT4G31140.1 34.365 323 201 7 35 348 27 347 5.38e-51 177
Msa0242390 AT3G55430.1 37.092 337 192 15 28 354 22 348 5.43e-51 176
Msa0242390 AT3G23770.1 33.832 334 205 9 33 352 35 366 9.77e-50 174
Msa0242390 AT3G13560.4 33.951 324 199 8 33 344 24 344 1.82e-49 174
Msa0242390 AT3G13560.1 33.951 324 199 8 33 344 24 344 1.82e-49 174
Msa0242390 AT3G13560.2 33.951 324 199 8 33 344 24 344 1.82e-49 174
Msa0242390 AT3G13560.5 33.951 324 199 8 33 344 24 344 1.82e-49 174
Msa0242390 AT3G13560.3 33.951 324 199 8 33 344 24 344 1.82e-49 174
Msa0242390 AT1G64760.1 31.737 334 215 8 35 358 25 355 1.20e-48 171
Msa0242390 AT1G64760.2 31.737 334 215 8 35 358 25 355 1.20e-48 171
Msa0242390 AT3G04010.1 31.831 355 227 8 15 358 13 363 3.41e-48 170
Msa0242390 AT5G20870.1 31.143 350 225 7 17 351 12 360 8.31e-48 169
Msa0242390 AT5G58480.1 32.132 333 213 6 25 347 16 345 9.00e-48 169
Msa0242390 AT5G64790.1 30.973 339 221 7 22 350 15 350 2.12e-47 168
Msa0242390 AT3G24330.1 30.000 340 227 7 25 354 29 367 2.55e-46 165
Msa0242390 AT2G27500.3 32.601 273 175 6 85 349 1 272 9.84e-45 156
Msa0242390 AT2G39640.1 33.140 344 214 12 9 346 6 339 1.68e-44 161
Msa0242390 AT3G55780.1 32.817 323 195 13 60 366 60 376 3.32e-38 141
Msa0242390 AT4G34480.3 40.000 235 130 7 123 348 3 235 8.24e-35 132
Msa0242390 AT5G24318.3 38.278 209 116 7 147 346 2 206 6.13e-32 122

Find 109 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATTGACATGACCCTTAT+TGG 0.130417 2_2:+18544064 Msa0242390:CDS
TTATCGCTTGATATATATTT+TGG 0.139583 2_2:-18544003 None:intergenic
CCAGAATTGGAGAAACATTT+TGG 0.146550 2_2:+18544541 Msa0242390:CDS
AAAGAAATGTATTGAATTTC+TGG 0.164011 2_2:+18543888 Msa0242390:CDS
CCAAAATGTTTCTCCAATTC+TGG 0.169992 2_2:-18544541 None:intergenic
GGCTTCTCCTCTCCTTCTAT+TGG 0.189245 2_2:+18541541 Msa0242390:CDS
TCTCCAATTCTGGACTCTTT+TGG 0.221583 2_2:-18544531 None:intergenic
GTCCAGTTGGAGGCTCTTCT+TGG 0.276663 2_2:+18543954 Msa0242390:CDS
TTACCAACATGGCTAAAATA+AGG 0.277500 2_2:-18544199 None:intergenic
AGGCTTTGAAGGTCGGAATT+AGG 0.299238 2_2:-18543830 None:intergenic
GCTTCTCCTCTCCTTCTATT+GGG 0.305499 2_2:+18541542 Msa0242390:CDS
ATTATATCAGATGCTCAAAT+AGG 0.310799 2_2:+18543650 Msa0242390:intron
TCAGGCATTGAACTCATTCT+TGG 0.314744 2_2:+18543803 Msa0242390:CDS
CTAAATGCATTAAGAAATTC+AGG 0.318002 2_2:+18543785 Msa0242390:CDS
AAGAAGTACCCATTTGGATT+TGG 0.328985 2_2:+18544586 Msa0242390:CDS
TTTCTAAAAGAACCTTTAGA+TGG 0.332211 2_2:-18544100 None:intergenic
GCATTTAGAGCAGCTTGATT+AGG 0.354084 2_2:-18543770 None:intergenic
ACATAGCATCAAATAAGTTT+TGG 0.363057 2_2:-18544297 None:intergenic
AACCGATCCCAGTGTTATCT+AGG 0.365306 2_2:-18544339 None:intergenic
TTTCACTTCACCGGGTGTTA+TGG 0.366594 2_2:+18544252 Msa0242390:CDS
GGATTTGGTGGGGAAAGAAA+TGG 0.371102 2_2:+18544601 Msa0242390:CDS
GATTTGGTGGGGAAAGAAAT+GGG 0.380181 2_2:+18544602 Msa0242390:CDS
TTGTGAACAATCCCAATAGA+AGG 0.380689 2_2:-18541553 None:intergenic
AGATCTATAACTTCGTTTGC+CGG 0.381564 2_2:-18543707 None:intergenic
AGACCCTTTCATTGGATACT+TGG 0.388329 2_2:+18544141 Msa0242390:CDS
AAGGTACTCCACGAAGGCCT+TGG 0.400880 2_2:+18544470 Msa0242390:CDS
AGTTGGTGGCTAGGCTTTGA+AGG 0.409122 2_2:-18543841 None:intergenic
AAACAAAAGAAGTACCCATT+TGG 0.414004 2_2:+18544580 Msa0242390:CDS
GAGGGAATGAGTTTCCAATA+AGG 0.416360 2_2:-18544078 None:intergenic
ATGGTACAAGATGGTCCAAA+TGG 0.420545 2_2:+18544271 Msa0242390:CDS
GAACCAAAAGAGTCCAGAAT+TGG 0.421071 2_2:+18544528 Msa0242390:CDS
GCATACCTAGACCCTTTCAT+TGG 0.423210 2_2:+18544133 Msa0242390:CDS
CTCTGATAATGCACGTCAAT+GGG 0.427457 2_2:+18543862 Msa0242390:CDS
CTTTCCCCACCAAATCCAAA+TGG 0.434776 2_2:-18544595 None:intergenic
ATTTGATGCTATGTTGGATT+CGG 0.441997 2_2:+18544306 Msa0242390:CDS
AGCCAAGAAGAGCCTCCAAC+TGG 0.443730 2_2:-18543956 None:intergenic
CTTCTTTCTTTGCTCCAACC+AGG 0.443871 2_2:+18541507 Msa0242390:CDS
AGGAGTATGTTATGGTATGA+TGG 0.444271 2_2:+18543670 Msa0242390:CDS
ACTCTGATAATGCACGTCAA+TGG 0.445056 2_2:+18543861 Msa0242390:CDS
TCCAACCAGGAGGTTCTCCT+TGG 0.446401 2_2:+18541520 Msa0242390:CDS
AAACTTATTTGATGCTATGT+TGG 0.449549 2_2:+18544300 Msa0242390:CDS
ATTGGATACTTGGTATATGC+AGG 0.452948 2_2:+18544151 Msa0242390:CDS
TTGATTCGTCATGTTGGTAA+AGG 0.455676 2_2:+18544451 Msa0242390:CDS
TACCAACATGGCTAAAATAA+GGG 0.471112 2_2:-18544198 None:intergenic
AAGTACCCATTTGGATTTGG+TGG 0.473093 2_2:+18544589 Msa0242390:CDS
TAGATAACACTGGGATCGGT+TGG 0.473307 2_2:+18544341 Msa0242390:CDS
AAATCTTCATGATCAAATCA+AGG 0.476242 2_2:+18544033 Msa0242390:CDS
AACTCATTCCCTCCATCTAA+AGG 0.483297 2_2:+18544088 Msa0242390:CDS
AGTGGTTGGCCCTCTGATGG+AGG 0.485939 2_2:+18544385 Msa0242390:CDS
CTAAAAGAACCTTTAGATGG+AGG 0.496570 2_2:-18544097 None:intergenic
TCTGTTGCCCAAGGCCTTCG+TGG 0.497067 2_2:-18544478 None:intergenic
CCAAACCTGCTGTGGGAATG+AGG 0.498024 2_2:-18541580 None:intergenic
AGGTACTCCACGAAGGCCTT+GGG 0.499202 2_2:+18544471 Msa0242390:CDS
TAAAAGAACCTTTAGATGGA+GGG 0.499886 2_2:-18544096 None:intergenic
GGGTAAACATTGACAAGTAA+AGG 0.501897 2_2:-18544178 None:intergenic
GCTCAAATAGGAGTATGTTA+TGG 0.506502 2_2:+18543662 Msa0242390:CDS
GAGAGTGGTTGGCCCTCTGA+TGG 0.506895 2_2:+18544382 Msa0242390:CDS
GTGGTTGGCCCTCTGATGGA+GGG 0.509372 2_2:+18544386 Msa0242390:CDS
AGTATCCAATGAAAGGGTCT+AGG 0.510404 2_2:-18544138 None:intergenic
AGATAACACTGGGATCGGTT+GGG 0.511148 2_2:+18544342 Msa0242390:CDS
TATACCAAGTATCCAATGAA+AGG 0.511220 2_2:-18544145 None:intergenic
AATGTTGTTGTATCTGAGAG+TGG 0.513764 2_2:+18544367 Msa0242390:CDS
AGGGAATGAGTTTCCAATAA+GGG 0.515316 2_2:-18544077 None:intergenic
TTTCCCCACCAAATCCAAAT+GGG 0.522115 2_2:-18544594 None:intergenic
GGAGTATGTTATGGTATGAT+GGG 0.531605 2_2:+18543671 Msa0242390:CDS
CATTATCAGAGTTGGTGGCT+AGG 0.533624 2_2:-18543850 None:intergenic
AGTACCCATTTGGATTTGGT+GGG 0.536863 2_2:+18544590 Msa0242390:CDS
ACGTGCATTATCAGAGTTGG+TGG 0.536916 2_2:-18543855 None:intergenic
AAAATCAAGTATATTGCAGT+TGG 0.537070 2_2:+18543920 Msa0242390:CDS
GGTGAAGTGAAAAGAGCATA+AGG 0.538337 2_2:-18544241 None:intergenic
GATAGAGACCAAACCTGCTG+TGG 0.547425 2_2:-18541588 None:intergenic
GGTGGCTAGGCTTTGAAGGT+CGG 0.549115 2_2:-18543837 None:intergenic
TTGACGTGCATTATCAGAGT+TGG 0.556118 2_2:-18543858 None:intergenic
GCCAAGGAGAACCTCCTGGT+TGG 0.558627 2_2:-18541521 None:intergenic
CATGACGAATCAAATTATCA+AGG 0.559453 2_2:-18544441 None:intergenic
TAGAAGGAGAGGAGAAGCCA+AGG 0.559699 2_2:-18541537 None:intergenic
GATAATTTGATTCGTCATGT+TGG 0.559706 2_2:+18544445 Msa0242390:CDS
ATACCAAGTATCCAATGAAA+GGG 0.561847 2_2:-18544144 None:intergenic
CTGGTTGGAGCAAAGAAAGA+AGG 0.564398 2_2:-18541506 None:intergenic
GCCCTAGATAACACTGGGAT+CGG 0.564508 2_2:+18544337 Msa0242390:CDS
AGAAATGGGGAAATTGTCAA+TGG 0.564590 2_2:+18544616 Msa0242390:CDS
TGGTACAAGATGGTCCAAAT+GGG 0.565640 2_2:+18544272 Msa0242390:CDS
ACCGATCCCAGTGTTATCTA+GGG 0.565705 2_2:-18544338 None:intergenic
ATAAACCTCATTCCCACAGC+AGG 0.569800 2_2:+18541575 Msa0242390:CDS
ATATAAGTTTCTGTTGCCCA+AGG 0.574099 2_2:-18544487 None:intergenic
GTACCCATTTGGATTTGGTG+GGG 0.578076 2_2:+18544591 Msa0242390:CDS
TATCACGCGGGTTACCAACA+TGG 0.578879 2_2:-18544210 None:intergenic
AGTAGCCGCCCCTCCATCAG+AGG 0.578903 2_2:-18544395 None:intergenic
ATTTGGTGGGGAAAGAAATG+GGG 0.581919 2_2:+18544603 Msa0242390:CDS
AACAATCCCAATAGAAGGAG+AGG 0.583975 2_2:-18541548 None:intergenic
CCATCTTGTACCATAACACC+CGG 0.586536 2_2:-18544262 None:intergenic
TTGTTGTATCTGAGAGTGGT+TGG 0.587177 2_2:+18544371 Msa0242390:CDS
CTTTCTTTGCTCCAACCAGG+AGG 0.587925 2_2:+18541510 Msa0242390:CDS
TGGTTGGCCCTCTGATGGAG+GGG 0.589912 2_2:+18544387 Msa0242390:CDS
AATGAAGTGAGTCCAGTTGG+AGG 0.593916 2_2:+18543944 Msa0242390:CDS
CATGCAGCCCTAGATAACAC+TGG 0.595342 2_2:+18544331 Msa0242390:CDS
GGTAATGAAGTGAGTCCAGT+TGG 0.595633 2_2:+18543941 Msa0242390:CDS
AGAAGCCAAGGAGAACCTCC+TGG 0.598809 2_2:-18541525 None:intergenic
CCGGGTGTTATGGTACAAGA+TGG 0.614761 2_2:+18544262 Msa0242390:CDS
TTGGCCCTCTGATGGAGGGG+CGG 0.614879 2_2:+18544390 Msa0242390:CDS
GTAGCCGCCCCTCCATCAGA+GGG 0.615453 2_2:-18544394 None:intergenic
ATGCAGCCCTAGATAACACT+GGG 0.632794 2_2:+18544332 Msa0242390:CDS
GATGGGAAACAATCTACCAC+CGG 0.634717 2_2:+18543688 Msa0242390:CDS
ATAGAGACCAAACCTGCTGT+GGG 0.642306 2_2:-18541587 None:intergenic
TCTATAACTTCGTTTGCCGG+TGG 0.654807 2_2:-18543704 None:intergenic
AATAAGGGTCATGTCAATAG+CGG 0.686579 2_2:-18544062 None:intergenic
TTGGTAAAGGTACTCCACGA+AGG 0.718049 2_2:+18544464 Msa0242390:CDS
TAAGGAAGAGATATATCACG+CGG 0.721413 2_2:-18544223 None:intergenic
AAGGAAGAGATATATCACGC+GGG 0.748768 2_2:-18544222 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTTTTATTAATAA+CGG - chr2_2:18542995-18543014 None:intergenic 0.0%
!! ATGACATAATAAAAAAAATA+AGG + chr2_2:18541746-18541765 Msa0242390:intron 10.0%
!! TATTAATGATGTATAATTTA+GGG - chr2_2:18543480-18543499 None:intergenic 10.0%
!!! TTTTATAATAAAAATGGTAT+AGG - chr2_2:18543554-18543573 None:intergenic 10.0%
!!! TTTTATTTATCTTTCTTTTT+TGG + chr2_2:18544748-18544767 Msa0242390:three_prime_UTR 10.0%
!!! TTTATTTATCTTTCTTTTTT+GGG + chr2_2:18544749-18544768 Msa0242390:three_prime_UTR 10.0%
!!! ACTTATCATTAATCTTTTTT+TGG - chr2_2:18541998-18542017 None:intergenic 15.0%
!!! AGTGATTTTTTTTTAAAAGA+AGG + chr2_2:18542889-18542908 Msa0242390:intron 15.0%
!!! ATTTTTATTGGTGTTAAATT+AGG - chr2_2:18543146-18543165 None:intergenic 15.0%
!!! TGCATCTATTAATTTTTTTT+AGG + chr2_2:18543329-18543348 Msa0242390:intron 15.0%
!! GTATTAATGATGTATAATTT+AGG - chr2_2:18543481-18543500 None:intergenic 15.0%
!!! ATTTTGTTTTTAATAGTGTG+AGG + chr2_2:18542019-18542038 Msa0242390:intron 20.0%
!! TGCTTAATATGATTCAATTA+TGG + chr2_2:18542322-18542341 Msa0242390:intron 20.0%
!! GCTTAATATGATTCAATTAT+GGG + chr2_2:18542323-18542342 Msa0242390:intron 20.0%
!! TAAAATCTTTACACATAACA+TGG - chr2_2:18542349-18542368 None:intergenic 20.0%
!!! TTTTTTTTTAAAAGAAGGTG+TGG + chr2_2:18542894-18542913 Msa0242390:intron 20.0%
!! ATATAACATATACAATGACA+TGG + chr2_2:18542946-18542965 Msa0242390:intron 20.0%
!!! ATGAAGATGTCTATTTTTAT+TGG - chr2_2:18543158-18543177 None:intergenic 20.0%
!!! TTGATGATATAAGTTATTGT+TGG + chr2_2:18543304-18543323 Msa0242390:intron 20.0%
!! TGATGATATAAGTTATTGTT+GGG + chr2_2:18543305-18543324 Msa0242390:intron 20.0%
!!! CTTAATTTGAGTGTTTAAAT+GGG - chr2_2:18543423-18543442 None:intergenic 20.0%
!!! ACTTAATTTGAGTGTTTAAA+TGG - chr2_2:18543424-18543443 None:intergenic 20.0%
!!! CATCATTAATACCTTTTTTT+CGG + chr2_2:18543489-18543508 Msa0242390:intron 20.0%
!! TATAAAGTTATCCGAAAAAA+AGG - chr2_2:18543503-18543522 None:intergenic 20.0%
!! AAAGAAATGTATTGAATTTC+TGG + chr2_2:18543888-18543907 Msa0242390:CDS 20.0%
!!! TATCGCTTGATATATATTTT+GGG - chr2_2:18544005-18544024 None:intergenic 20.0%
!!! TTATCGCTTGATATATATTT+TGG - chr2_2:18544006-18544025 None:intergenic 20.0%
!!! TTCTTTTAGAAATGATGTTA+GGG + chr2_2:18544111-18544130 Msa0242390:CDS 20.0%
! AACAATGCATAAAATATGCA+AGG + chr2_2:18541947-18541966 Msa0242390:intron 25.0%
!!! CATTAATCTTTTTTTGGTAG+TGG - chr2_2:18541992-18542011 None:intergenic 25.0%
! AGAAAAAAGTTTAAGTAAGC+CGG - chr2_2:18542128-18542147 None:intergenic 25.0%
! TAAAACCTAGTTCAATTTAC+AGG + chr2_2:18542715-18542734 Msa0242390:intron 25.0%
! AAAAAAAGCCGTATTATAGA+TGG - chr2_2:18543122-18543141 None:intergenic 25.0%
! AATTTGGGTGTTTATAAGAT+TGG + chr2_2:18543190-18543209 Msa0242390:intron 25.0%
!!! TATAAGATTGGTGCTTTTAA+TGG + chr2_2:18543202-18543221 Msa0242390:intron 25.0%
! ACAAGTAAAGATGATAGAAA+CGG - chr2_2:18543230-18543249 None:intergenic 25.0%
! TTTCTATCATCTTTACTTGT+AGG + chr2_2:18543230-18543249 Msa0242390:intron 25.0%
! ATTATATCAGATGCTCAAAT+AGG + chr2_2:18543650-18543669 Msa0242390:intron 25.0%
! CTAAATGCATTAAGAAATTC+AGG + chr2_2:18543785-18543804 Msa0242390:CDS 25.0%
!!! ATATACTTGATTTTGACACT+AGG - chr2_2:18543914-18543933 None:intergenic 25.0%
! AAAATCAAGTATATTGCAGT+TGG + chr2_2:18543920-18543939 Msa0242390:CDS 25.0%
! AAATCTTCATGATCAAATCA+AGG + chr2_2:18544033-18544052 Msa0242390:CDS 25.0%
!! TTTCTAAAAGAACCTTTAGA+TGG - chr2_2:18544103-18544122 None:intergenic 25.0%
!!! GTTCTTTTAGAAATGATGTT+AGG + chr2_2:18544110-18544129 Msa0242390:CDS 25.0%
!! ACATAGCATCAAATAAGTTT+TGG - chr2_2:18544300-18544319 None:intergenic 25.0%
! AAACTTATTTGATGCTATGT+TGG + chr2_2:18544300-18544319 Msa0242390:CDS 25.0%
! GACATGTAAGAAAAAAATCA+AGG + chr2_2:18544670-18544689 Msa0242390:exon 25.0%
!!! TTTTTTGGGTGTAGAAAATT+TGG + chr2_2:18544763-18544782 Msa0242390:three_prime_UTR 25.0%
CTCTATCTTCTATATAGAGA+TGG + chr2_2:18541604-18541623 Msa0242390:intron 30.0%
!!! AATCTTTTTTTGGTAGTGGT+CGG - chr2_2:18541988-18542007 None:intergenic 30.0%
!! AAGGCTCAAAAAGTATTTAC+AGG - chr2_2:18542073-18542092 None:intergenic 30.0%
GACATTTATTTCGAAACGAA+GGG - chr2_2:18542235-18542254 None:intergenic 30.0%
!! CGTTTGTTATAATAGCAAGT+TGG + chr2_2:18542254-18542273 Msa0242390:intron 30.0%
!! TGTTATAATAGCAAGTTGGT+CGG + chr2_2:18542258-18542277 Msa0242390:intron 30.0%
ATAATGCACAATCCATTAAG+AGG + chr2_2:18542857-18542876 Msa0242390:intron 30.0%
GAGTTAGACCATCTATAATA+CGG + chr2_2:18543111-18543130 Msa0242390:intron 30.0%
TAAAAGAACCTTTAGATGGA+GGG - chr2_2:18544099-18544118 None:intergenic 30.0%
ATACCAAGTATCCAATGAAA+GGG - chr2_2:18544147-18544166 None:intergenic 30.0%
TATACCAAGTATCCAATGAA+AGG - chr2_2:18544148-18544167 None:intergenic 30.0%
TACCAACATGGCTAAAATAA+GGG - chr2_2:18544201-18544220 None:intergenic 30.0%
TTACCAACATGGCTAAAATA+AGG - chr2_2:18544202-18544221 None:intergenic 30.0%
!! AATAAGTTTTGGTACCCATT+TGG - chr2_2:18544289-18544308 None:intergenic 30.0%
ATTTGATGCTATGTTGGATT+CGG + chr2_2:18544306-18544325 Msa0242390:CDS 30.0%
CATGACGAATCAAATTATCA+AGG - chr2_2:18544444-18544463 None:intergenic 30.0%
! GATAATTTGATTCGTCATGT+TGG + chr2_2:18544445-18544464 Msa0242390:CDS 30.0%
!! GGGTACTTCTTTTGTTTATT+AGG - chr2_2:18544577-18544596 None:intergenic 30.0%
!! AAACAAAAGAAGTACCCATT+TGG + chr2_2:18544580-18544599 Msa0242390:CDS 30.0%
TTGTGAACAATCCCAATAGA+AGG - chr2_2:18541556-18541575 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+CGG + chr2_2:18541952-18541971 Msa0242390:intron 35.0%
!!! ATCTTTTTTTGGTAGTGGTC+GGG - chr2_2:18541987-18542006 None:intergenic 35.0%
CGACATTTATTTCGAAACGA+AGG - chr2_2:18542236-18542255 None:intergenic 35.0%
!! GTTATAATAGCAAGTTGGTC+GGG + chr2_2:18542259-18542278 Msa0242390:intron 35.0%
!! TTATAATAGCAAGTTGGTCG+GGG + chr2_2:18542260-18542279 Msa0242390:intron 35.0%
AAATCCTCAAGTATGGCATA+TGG + chr2_2:18542493-18542512 Msa0242390:intron 35.0%
ACACACCTGTAAATTGAACT+AGG - chr2_2:18542723-18542742 None:intergenic 35.0%
TGTACGTCTCTCTATAATTG+AGG - chr2_2:18543030-18543049 None:intergenic 35.0%
TCATCGTGACAACAACAATT+TGG + chr2_2:18543174-18543193 Msa0242390:intron 35.0%
CATCGTGACAACAACAATTT+GGG + chr2_2:18543175-18543194 Msa0242390:intron 35.0%
ACAAAATAAGTGACATGTGC+CGG + chr2_2:18543392-18543411 Msa0242390:intron 35.0%
! GCTCAAATAGGAGTATGTTA+TGG + chr2_2:18543662-18543681 Msa0242390:CDS 35.0%
! AGGAGTATGTTATGGTATGA+TGG + chr2_2:18543670-18543689 Msa0242390:CDS 35.0%
GGAGTATGTTATGGTATGAT+GGG + chr2_2:18543671-18543690 Msa0242390:CDS 35.0%
AGATCTATAACTTCGTTTGC+CGG - chr2_2:18543710-18543729 None:intergenic 35.0%
!! TGATATATATTTTGGGTGGC+AGG - chr2_2:18543998-18544017 None:intergenic 35.0%
!! CGCTTGATATATATTTTGGG+TGG - chr2_2:18544002-18544021 None:intergenic 35.0%
AATAAGGGTCATGTCAATAG+CGG - chr2_2:18544065-18544084 None:intergenic 35.0%
AGGGAATGAGTTTCCAATAA+GGG - chr2_2:18544080-18544099 None:intergenic 35.0%
CTAAAAGAACCTTTAGATGG+AGG - chr2_2:18544100-18544119 None:intergenic 35.0%
ATTGGATACTTGGTATATGC+AGG + chr2_2:18544151-18544170 Msa0242390:CDS 35.0%
GGGTAAACATTGACAAGTAA+AGG - chr2_2:18544181-18544200 None:intergenic 35.0%
!!! TACCCTTATTTTAGCCATGT+TGG + chr2_2:18544196-18544215 Msa0242390:CDS 35.0%
TAAGGAAGAGATATATCACG+CGG - chr2_2:18544226-18544245 None:intergenic 35.0%
! TTATGCTCTTTTCACTTCAC+CGG + chr2_2:18544243-18544262 Msa0242390:CDS 35.0%
AATGTTGTTGTATCTGAGAG+TGG + chr2_2:18544367-18544386 Msa0242390:CDS 35.0%
! TTGATTCGTCATGTTGGTAA+AGG + chr2_2:18544451-18544470 Msa0242390:CDS 35.0%
ATATAAGTTTCTGTTGCCCA+AGG - chr2_2:18544490-18544509 None:intergenic 35.0%
CCAAAATGTTTCTCCAATTC+TGG - chr2_2:18544544-18544563 None:intergenic 35.0%
! CCAGAATTGGAGAAACATTT+TGG + chr2_2:18544541-18544560 Msa0242390:CDS 35.0%
!! AAGAAGTACCCATTTGGATT+TGG + chr2_2:18544586-18544605 Msa0242390:CDS 35.0%
AGAAATGGGGAAATTGTCAA+TGG + chr2_2:18544616-18544635 Msa0242390:CDS 35.0%
!! CAAGGTTTTCAAGATTTGAG+TGG + chr2_2:18544688-18544707 Msa0242390:three_prime_UTR 35.0%
AACAATCCCAATAGAAGGAG+AGG - chr2_2:18541551-18541570 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr2_2:18541953-18541972 Msa0242390:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG + chr2_2:18541954-18541973 Msa0242390:intron 40.0%
!!! TCTTTTTTTGGTAGTGGTCG+GGG - chr2_2:18541986-18542005 None:intergenic 40.0%
TTTGAGCCTTGAGATCTGTT+TGG + chr2_2:18542083-18542102 Msa0242390:intron 40.0%
TGCCATACTTGAGGATTTGA+GGG - chr2_2:18542491-18542510 None:intergenic 40.0%
ATGCCATACTTGAGGATTTG+AGG - chr2_2:18542492-18542511 None:intergenic 40.0%
ACTAAAGCCACACCTCTTAA+TGG - chr2_2:18542872-18542891 None:intergenic 40.0%
GAGAGACGTACACAAACAAT+CGG + chr2_2:18543038-18543057 Msa0242390:intron 40.0%
! GCATTTAGAGCAGCTTGATT+AGG - chr2_2:18543773-18543792 None:intergenic 40.0%
!! TCAGGCATTGAACTCATTCT+TGG + chr2_2:18543803-18543822 Msa0242390:CDS 40.0%
TTGACGTGCATTATCAGAGT+TGG - chr2_2:18543861-18543880 None:intergenic 40.0%
! ACTCTGATAATGCACGTCAA+TGG + chr2_2:18543861-18543880 Msa0242390:CDS 40.0%
! CTCTGATAATGCACGTCAAT+GGG + chr2_2:18543862-18543881 Msa0242390:CDS 40.0%
GCTATTGACATGACCCTTAT+TGG + chr2_2:18544064-18544083 Msa0242390:CDS 40.0%
GAGGGAATGAGTTTCCAATA+AGG - chr2_2:18544081-18544100 None:intergenic 40.0%
AACTCATTCCCTCCATCTAA+AGG + chr2_2:18544088-18544107 Msa0242390:CDS 40.0%
AGTATCCAATGAAAGGGTCT+AGG - chr2_2:18544141-18544160 None:intergenic 40.0%
AGACCCTTTCATTGGATACT+TGG + chr2_2:18544141-18544160 Msa0242390:CDS 40.0%
AAGGAAGAGATATATCACGC+GGG - chr2_2:18544225-18544244 None:intergenic 40.0%
! GGTGAAGTGAAAAGAGCATA+AGG - chr2_2:18544244-18544263 None:intergenic 40.0%
! TATGCTCTTTTCACTTCACC+GGG + chr2_2:18544244-18544263 Msa0242390:CDS 40.0%
ATGGTACAAGATGGTCCAAA+TGG + chr2_2:18544271-18544290 Msa0242390:CDS 40.0%
TGGTACAAGATGGTCCAAAT+GGG + chr2_2:18544272-18544291 Msa0242390:CDS 40.0%
TTGTTGTATCTGAGAGTGGT+TGG + chr2_2:18544371-18544390 Msa0242390:CDS 40.0%
GAACCAAAAGAGTCCAGAAT+TGG + chr2_2:18544528-18544547 Msa0242390:CDS 40.0%
! TCTCCAATTCTGGACTCTTT+TGG - chr2_2:18544534-18544553 None:intergenic 40.0%
AAGTACCCATTTGGATTTGG+TGG + chr2_2:18544589-18544608 Msa0242390:CDS 40.0%
! AGTACCCATTTGGATTTGGT+GGG + chr2_2:18544590-18544609 Msa0242390:CDS 40.0%
TTTCCCCACCAAATCCAAAT+GGG - chr2_2:18544597-18544616 None:intergenic 40.0%
!! GATTTGGTGGGGAAAGAAAT+GGG + chr2_2:18544602-18544621 Msa0242390:CDS 40.0%
! ATTTGGTGGGGAAAGAAATG+GGG + chr2_2:18544603-18544622 Msa0242390:CDS 40.0%
CTGGTTGGAGCAAAGAAAGA+AGG - chr2_2:18541509-18541528 None:intergenic 45.0%
CTTCTTTCTTTGCTCCAACC+AGG + chr2_2:18541507-18541526 Msa0242390:CDS 45.0%
GCTTCTCCTCTCCTTCTATT+GGG + chr2_2:18541542-18541561 Msa0242390:CDS 45.0%
ATAAACCTCATTCCCACAGC+AGG + chr2_2:18541575-18541594 Msa0242390:CDS 45.0%
ATAGAGACCAAACCTGCTGT+GGG - chr2_2:18541590-18541609 None:intergenic 45.0%
! CCAACTGAGCTAAGCTTTTG+AGG - chr2_2:18541924-18541943 None:intergenic 45.0%
CCTCAAAAGCTTAGCTCAGT+TGG + chr2_2:18541921-18541940 Msa0242390:intron 45.0%
CCAGAACCAAACAGATCTCA+AGG - chr2_2:18542092-18542111 None:intergenic 45.0%
! CCTTGAGATCTGTTTGGTTC+TGG + chr2_2:18542089-18542108 Msa0242390:intron 45.0%
!! TGTTTGGTTCTGGTGAATCG+CGG + chr2_2:18542099-18542118 Msa0242390:intron 45.0%
TCCCCTCAAATCCTCAAGTA+TGG + chr2_2:18542486-18542505 Msa0242390:intron 45.0%
GCCATACTTGAGGATTTGAG+GGG - chr2_2:18542490-18542509 None:intergenic 45.0%
TCAGCCATATGCCATACTTG+AGG - chr2_2:18542500-18542519 None:intergenic 45.0%
GCACAATCCATTAAGAGGTG+TGG + chr2_2:18542862-18542881 Msa0242390:intron 45.0%
GATGGGAAACAATCTACCAC+CGG + chr2_2:18543688-18543707 Msa0242390:CDS 45.0%
TCTATAACTTCGTTTGCCGG+TGG - chr2_2:18543707-18543726 None:intergenic 45.0%
!! AGGCTTTGAAGGTCGGAATT+AGG - chr2_2:18543833-18543852 None:intergenic 45.0%
!! CATTATCAGAGTTGGTGGCT+AGG - chr2_2:18543853-18543872 None:intergenic 45.0%
ACGTGCATTATCAGAGTTGG+TGG - chr2_2:18543858-18543877 None:intergenic 45.0%
GGTAATGAAGTGAGTCCAGT+TGG + chr2_2:18543941-18543960 Msa0242390:CDS 45.0%
AATGAAGTGAGTCCAGTTGG+AGG + chr2_2:18543944-18543963 Msa0242390:CDS 45.0%
GCATACCTAGACCCTTTCAT+TGG + chr2_2:18544133-18544152 Msa0242390:CDS 45.0%
TTTCACTTCACCGGGTGTTA+TGG + chr2_2:18544252-18544271 Msa0242390:CDS 45.0%
CCATCTTGTACCATAACACC+CGG - chr2_2:18544265-18544284 None:intergenic 45.0%
ATGCAGCCCTAGATAACACT+GGG + chr2_2:18544332-18544351 Msa0242390:CDS 45.0%
ACCGATCCCAGTGTTATCTA+GGG - chr2_2:18544341-18544360 None:intergenic 45.0%
AACCGATCCCAGTGTTATCT+AGG - chr2_2:18544342-18544361 None:intergenic 45.0%
TAGATAACACTGGGATCGGT+TGG + chr2_2:18544341-18544360 Msa0242390:CDS 45.0%
AGATAACACTGGGATCGGTT+GGG + chr2_2:18544342-18544361 Msa0242390:CDS 45.0%
!! TTGGTAAAGGTACTCCACGA+AGG + chr2_2:18544464-18544483 Msa0242390:CDS 45.0%
!! GTACCCATTTGGATTTGGTG+GGG + chr2_2:18544591-18544610 Msa0242390:CDS 45.0%
CTTTCCCCACCAAATCCAAA+TGG - chr2_2:18544598-18544617 None:intergenic 45.0%
!! GGATTTGGTGGGGAAAGAAA+TGG + chr2_2:18544601-18544620 Msa0242390:CDS 45.0%
!!! TTTTTCTTTTATAATTAAAA+TGG - chr2_2:18543526-18543545 None:intergenic 5.0%
!!! TTTTTCTTTTATAATAAAAA+TGG - chr2_2:18543560-18543579 None:intergenic 5.0%
!!! AAAAAATAGTATTAATATTT+TGG - chr2_2:18544870-18544889 None:intergenic 5.0%
CTTTCTTTGCTCCAACCAGG+AGG + chr2_2:18541510-18541529 Msa0242390:CDS 50.0%
TAGAAGGAGAGGAGAAGCCA+AGG - chr2_2:18541540-18541559 None:intergenic 50.0%
GGCTTCTCCTCTCCTTCTAT+TGG + chr2_2:18541541-18541560 Msa0242390:CDS 50.0%
GATAGAGACCAAACCTGCTG+TGG - chr2_2:18541591-18541610 None:intergenic 50.0%
TTCTGGTGAATCGCGGAAAC+CGG + chr2_2:18542106-18542125 Msa0242390:intron 50.0%
AGTGTTTAAATGGGCGACGC+CGG - chr2_2:18543414-18543433 None:intergenic 50.0%
!! AGTTGGTGGCTAGGCTTTGA+AGG - chr2_2:18543844-18543863 None:intergenic 50.0%
! TATCACGCGGGTTACCAACA+TGG - chr2_2:18544213-18544232 None:intergenic 50.0%
! CCGGGTGTTATGGTACAAGA+TGG + chr2_2:18544262-18544281 Msa0242390:CDS 50.0%
CATGCAGCCCTAGATAACAC+TGG + chr2_2:18544331-18544350 Msa0242390:CDS 50.0%
GCCCTAGATAACACTGGGAT+CGG + chr2_2:18544337-18544356 Msa0242390:CDS 50.0%
TCCAACCAGGAGGTTCTCCT+TGG + chr2_2:18541520-18541539 Msa0242390:CDS 55.0%
AGAAGCCAAGGAGAACCTCC+TGG - chr2_2:18541528-18541547 None:intergenic 55.0%
CCAAACCTGCTGTGGGAATG+AGG - chr2_2:18541583-18541602 None:intergenic 55.0%
CCTCATTCCCACAGCAGGTT+TGG + chr2_2:18541580-18541599 Msa0242390:intron 55.0%
AGTGGTCGGGGTTTAAACCC+CGG - chr2_2:18541974-18541993 None:intergenic 55.0%
!! GGTGGCTAGGCTTTGAAGGT+CGG - chr2_2:18543840-18543859 None:intergenic 55.0%
GTCCAGTTGGAGGCTCTTCT+TGG + chr2_2:18543954-18543973 Msa0242390:CDS 55.0%
AGCCAAGAAGAGCCTCCAAC+TGG - chr2_2:18543959-18543978 None:intergenic 55.0%
! AAGGTACTCCACGAAGGCCT+TGG + chr2_2:18544470-18544489 Msa0242390:CDS 55.0%
AGGTACTCCACGAAGGCCTT+GGG + chr2_2:18544471-18544490 Msa0242390:CDS 55.0%
GCCAAGGAGAACCTCCTGGT+TGG - chr2_2:18541524-18541543 None:intergenic 60.0%
! GAGAGTGGTTGGCCCTCTGA+TGG + chr2_2:18544382-18544401 Msa0242390:CDS 60.0%
! AGTGGTTGGCCCTCTGATGG+AGG + chr2_2:18544385-18544404 Msa0242390:CDS 60.0%
! GTGGTTGGCCCTCTGATGGA+GGG + chr2_2:18544386-18544405 Msa0242390:CDS 60.0%
! TGGTTGGCCCTCTGATGGAG+GGG + chr2_2:18544387-18544406 Msa0242390:CDS 60.0%
TCTGTTGCCCAAGGCCTTCG+TGG - chr2_2:18544481-18544500 None:intergenic 60.0%
TTGGCCCTCTGATGGAGGGG+CGG + chr2_2:18544390-18544409 Msa0242390:CDS 65.0%
GTAGCCGCCCCTCCATCAGA+GGG - chr2_2:18544397-18544416 None:intergenic 65.0%
AGTAGCCGCCCCTCCATCAG+AGG - chr2_2:18544398-18544417 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 18541464 18544892 18541464 ID=Msa0242390;Name=Msa0242390
chr2_2 mRNA 18541464 18544892 18541464 ID=Msa0242390-mRNA-1;Parent=Msa0242390;Name=Msa0242390-mRNA-1;_AED=0.01;_eAED=0.01;_QI=39|1|1|1|0|0.5|2|214|370
chr2_2 exon 18541464 18541596 18541464 ID=Msa0242390-mRNA-1:exon:7552;Parent=Msa0242390-mRNA-1
chr2_2 exon 18543660 18544892 18543660 ID=Msa0242390-mRNA-1:exon:7553;Parent=Msa0242390-mRNA-1
chr2_2 five_prime_UTR 18541464 18541502 18541464 ID=Msa0242390-mRNA-1:five_prime_utr;Parent=Msa0242390-mRNA-1
chr2_2 CDS 18541503 18541596 18541503 ID=Msa0242390-mRNA-1:cds;Parent=Msa0242390-mRNA-1
chr2_2 CDS 18543660 18544678 18543660 ID=Msa0242390-mRNA-1:cds;Parent=Msa0242390-mRNA-1
chr2_2 three_prime_UTR 18544679 18544892 18544679 ID=Msa0242390-mRNA-1:three_prime_utr;Parent=Msa0242390-mRNA-1
Gene Sequence

>Msa0242390

ATGCCTTCTTTCTTTGCTCCAACCAGGAGGTTCTCCTTGGCTTCTCCTCTCCTTCTATTGGGATTGTTCACAATAAACCTCATTCCCACAGCAGATGCTCAAATAGGAGTATGTTATGGTATGATGGGAAACAATCTACCACCGGCAAACGAAGTTATAGATCTCTACAAAGCAAACAATATCAAGAGAATGAGACTCTATGATCCTAATCAAGCTGCTCTAAATGCATTAAGAAATTCAGGCATTGAACTCATTCTTGGTGTGCCTAATTCCGACCTTCAAAGCCTAGCCACCAACTCTGATAATGCACGTCAATGGGTACAAAGAAATGTATTGAATTTCTGGCCTAGTGTCAAAATCAAGTATATTGCAGTTGGTAATGAAGTGAGTCCAGTTGGAGGCTCTTCTTGGCTAGCACAATATGTTCTACCTGCCACCCAAAATATATATCAAGCGATAAGAGCGAAAAATCTTCATGATCAAATCAAGGTTTCAACCGCTATTGACATGACCCTTATTGGAAACTCATTCCCTCCATCTAAAGGTTCTTTTAGAAATGATGTTAGGGCATACCTAGACCCTTTCATTGGATACTTGGTATATGCAGGTGCACCTTTACTTGTCAATGTTTACCCTTATTTTAGCCATGTTGGTAACCCGCGTGATATATCTCTTCCTTATGCTCTTTTCACTTCACCGGGTGTTATGGTACAAGATGGTCCAAATGGGTACCAAAACTTATTTGATGCTATGTTGGATTCGGTGCATGCAGCCCTAGATAACACTGGGATCGGTTGGGTGAATGTTGTTGTATCTGAGAGTGGTTGGCCCTCTGATGGAGGGGCGGCTACTTCATATGACAACGCACGTATTTACCTTGATAATTTGATTCGTCATGTTGGTAAAGGTACTCCACGAAGGCCTTGGGCAACAGAAACTTATATTTTTGCTATGTTTGATGAGAACCAAAAGAGTCCAGAATTGGAGAAACATTTTGGAGTGTTTTATCCTAATAAACAAAAGAAGTACCCATTTGGATTTGGTGGGGAAAGAAATGGGGAAATTGTCAATGGTGACTTCAATGCAACTATTTCTCTTAAGAGTGACATGTAA
Protein sequence

>Msa0242390

MPSFFAPTRRFSLASPLLLLGLFTINLIPTADAQIGVCYGMMGNNLPPANEVIDLYKANNIKRMRLYDPNQAALNALRNSGIELILGVPNSDLQSLATNSDNARQWVQRNVLNFWPSVKIKYIAVGNEVSPVGGSSWLAQYVLPATQNIYQAIRAKNLHDQIKVSTAIDMTLIGNSFPPSKGSFRNDVRAYLDPFIGYLVYAGAPLLVNVYPYFSHVGNPRDISLPYALFTSPGVMVQDGPNGYQNLFDAMLDSVHAALDNTGIGWVNVVVSESGWPSDGGAATSYDNARIYLDNLIRHVGKGTPRRPWATETYIFAMFDENQKSPELEKHFGVFYPNKQKKYPFGFGGERNGEIVNGDFNATISLKSDM*