AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1239920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1239920 MtrunA17_Chr8g0351861 97.817 229 5 0 1 229 1 229 4.43e-171 469
Msa1239920 MtrunA17_Chr8g0381841 58.371 221 87 3 6 226 8 223 1.64e-92 271
Msa1239920 MtrunA17_Chr3g0123821 57.014 221 89 3 6 226 7 221 1.83e-91 268
Msa1239920 MtrunA17_Chr1g0174281 54.867 226 98 3 1 226 1 222 2.65e-89 262
Msa1239920 MtrunA17_Chr7g0231131 56.604 212 89 2 1 212 1 209 1.38e-88 261
Msa1239920 MtrunA17_Chr2g0319951 53.219 233 87 3 1 227 1 217 4.86e-83 246
Msa1239920 MtrunA17_Chr2g0315551 54.185 227 93 4 1 227 1 216 2.14e-82 244
Msa1239920 MtrunA17_Chr4g0032201 53.846 221 92 3 8 228 5 215 1.69e-81 242
Msa1239920 MtrunA17_Chr7g0214241 54.419 215 88 2 15 227 14 220 3.88e-81 241
Msa1239920 MtrunA17_Chr3g0112681 56.075 214 86 2 14 227 10 215 6.35e-80 238
Msa1239920 MtrunA17_Chr4g0046261 54.185 227 93 4 1 227 1 216 6.42e-80 238
Msa1239920 MtrunA17_Chr8g0346421 54.378 217 92 3 10 225 20 230 2.18e-79 238
Msa1239920 MtrunA17_Chr2g0283131 53.744 227 94 4 1 227 1 216 2.28e-79 237
Msa1239920 MtrunA17_Chr2g0276941 61.667 180 69 0 8 187 7 186 2.83e-79 237
Msa1239920 MtrunA17_Chr4g0040781 52.423 227 97 4 1 227 1 216 2.69e-78 234
Msa1239920 MtrunA17_Chr1g0189361 52.804 214 99 1 14 227 12 223 5.64e-78 234
Msa1239920 MtrunA17_Chr7g0234201 55.349 215 83 3 15 227 12 215 7.42e-77 231
Msa1239920 MtrunA17_Chr2g0325091 61.326 181 69 1 6 186 2 181 1.76e-76 229
Msa1239920 MtrunA17_Chr7g0275991 53.456 217 94 3 11 225 15 226 2.41e-76 229
Msa1239920 MtrunA17_Chr6g0482721 51.584 221 91 4 11 227 7 215 3.99e-68 208
Msa1239920 MtrunA17_Chr8g0392931 49.528 212 98 2 11 216 9 217 6.51e-62 192
Msa1239920 MtrunA17_Chr2g0290891 51.220 164 80 0 15 178 5 168 3.48e-57 180
Msa1239920 MtrunA17_Chr8g0335471 43.458 214 104 3 14 227 6 202 1.07e-56 179
Msa1239920 MtrunA17_Chr6g0458081 50.610 164 81 0 14 177 4 167 6.20e-56 177
Msa1239920 MtrunA17_Chr8g0349711 51.220 164 80 0 15 178 5 168 8.30e-56 177
Msa1239920 MtrunA17_Chr7g0250531 49.708 171 86 0 14 184 6 176 1.25e-55 176
Msa1239920 MtrunA17_Chr4g0055651 49.123 171 87 0 14 184 6 176 2.25e-55 176
Msa1239920 MtrunA17_Chr8g0349681 51.445 173 84 0 6 178 374 546 1.22e-53 181
Msa1239920 MtrunA17_Chr8g0349681 50.610 164 81 0 15 178 174 337 1.48e-50 173
Msa1239920 MtrunA17_Chr8g0349681 50.641 156 77 0 15 170 12 167 7.90e-48 166
Msa1239920 MtrunA17_Chr1g0182321 42.647 204 113 2 14 216 13 213 3.10e-51 165
Msa1239920 MtrunA17_Chr1g0212521 41.860 215 110 3 14 226 13 214 9.28e-51 164
Msa1239920 MtrunA17_Chr1g0182301 42.157 204 114 2 14 216 13 213 1.08e-50 164
Msa1239920 MtrunA17_Chr7g0263071 49.091 165 83 1 14 177 13 177 1.96e-50 163
Msa1239920 MtrunA17_Chr4g0030911 49.091 165 83 1 14 177 13 177 2.39e-50 163
Msa1239920 MtrunA17_Chr1g0199331 50.000 154 76 1 18 170 33 186 5.09e-50 162
Msa1239920 MtrunA17_Chr2g0276931 39.906 213 111 1 14 226 7 202 2.32e-49 160
Msa1239920 MtrunA17_Chr3g0109721 46.405 153 82 0 18 170 12 164 1.20e-46 153
Msa1239920 MtrunA17_Chr5g0433561 46.405 153 82 0 18 170 12 164 6.24e-46 151
Msa1239920 MtrunA17_Chr2g0327911 45.783 166 88 2 14 177 13 178 1.69e-45 150
Msa1239920 MtrunA17_Chr1g0159481 41.204 216 109 6 14 227 15 214 1.42e-43 145
Msa1239920 MtrunA17_Chr3g0123971 37.888 161 100 0 17 177 10 170 2.10e-43 145
Msa1239920 MtrunA17_Chr8g0390561 35.714 210 113 3 18 227 11 198 2.65e-43 144
Msa1239920 MtrunA17_Chr8g0382221 38.509 161 99 0 17 177 10 170 3.02e-43 144
Msa1239920 MtrunA17_Chr8g0384311 42.781 187 104 3 10 194 7 192 3.77e-43 144
Msa1239920 MtrunA17_Chr7g0265001 41.204 216 110 4 14 227 14 214 3.79e-42 142
Msa1239920 MtrunA17_Chr5g0400131 38.312 154 95 0 17 170 10 163 9.61e-41 138
Msa1239920 MtrunA17_Chr3g0130271 43.243 185 101 4 13 194 9 192 3.17e-40 137
Msa1239920 MtrunA17_Chr4g0055081 37.662 154 96 0 17 170 10 163 1.07e-39 135
Msa1239920 MtrunA17_Chr1g0201121 41.718 163 88 3 16 171 8 170 9.99e-39 133
Msa1239920 MtrunA17_Chr1g0180291 45.283 159 84 3 14 170 12 169 2.32e-38 132
Msa1239920 MtrunA17_Chr8g0383261 41.718 163 88 3 16 171 12 174 5.30e-38 131
Msa1239920 MtrunA17_Chr6g0466301 41.718 163 88 3 16 171 8 170 5.80e-38 131
Msa1239920 MtrunA17_Chr6g0465491 41.718 163 88 3 16 171 8 170 5.80e-38 131
Msa1239920 MtrunA17_Chr1g0197331 45.509 167 88 3 14 177 13 179 9.14e-38 130
Msa1239920 MtrunA17_Chr4g0034871 41.358 162 88 4 16 170 8 169 9.50e-37 128
Msa1239920 MtrunA17_Chr2g0331691 41.358 162 88 3 16 170 10 171 6.00e-36 126
Msa1239920 MtrunA17_Chr4g0004661 41.358 162 88 3 16 170 64 225 7.44e-35 124
Msa1239920 MtrunA17_Chr6g0466161 38.000 150 82 4 33 173 7 154 5.96e-26 100
Msa1239920 MtrunA17_Chr6g0465471 38.000 150 82 4 33 173 7 154 6.35e-26 100
Msa1239920 MtrunA17_Chr3g0138111 31.765 170 112 4 9 177 5 171 1.26e-23 94.4
Msa1239920 MtrunA17_Chr3g0138101 31.765 170 112 4 9 177 5 171 1.44e-23 94.4
Msa1239920 MtrunA17_Chr3g0138121 31.765 170 112 4 9 177 5 171 1.46e-23 94.4
Msa1239920 MtrunA17_Chr3g0117931 31.319 182 111 6 16 185 8 187 3.17e-19 82.4
Msa1239920 MtrunA17_Chr6g0486041 32.335 167 99 5 16 170 6 170 6.10e-18 79.0
Msa1239920 MtrunA17_Chr4g0046211 35.294 119 74 3 16 133 6 122 4.75e-17 75.1
Msa1239920 MtrunA17_Chr6g0466431 35.922 103 57 1 16 118 8 101 8.48e-17 73.2
Msa1239920 MtrunA17_Chr6g0465611 35.922 103 57 1 16 118 8 101 8.48e-17 73.2
Msa1239920 MtrunA17_Chr2g0325101 30.539 167 102 5 16 170 6 170 1.04e-16 75.5
Msa1239920 MtrunA17_Chr5g0405791 30.178 169 100 6 16 170 6 170 1.71e-16 75.1
Msa1239920 MtrunA17_Chr4g0037021 31.737 167 100 6 16 170 6 170 2.75e-16 74.3
Msa1239920 MtrunA17_Chr8g0371501 30.178 169 100 6 16 170 6 170 6.45e-16 73.6
Msa1239920 MtrunA17_Chr2g0331841 46.552 58 31 0 85 142 2 59 5.26e-12 60.5
Msa1239920 MtrunA17_Chr5g0443631 24.405 168 119 3 17 178 105 270 1.22e-11 62.8
Msa1239920 MtrunA17_Chr1g0178291 30.667 150 97 3 21 170 433 575 1.57e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1239920 AT5G47960.1 57.080 226 91 3 1 226 1 220 4.77e-95 277
Msa1239920 AT3G12160.1 57.965 226 88 3 1 226 1 219 2.18e-94 276
Msa1239920 AT4G39990.1 56.682 217 84 3 13 227 14 222 2.90e-87 258
Msa1239920 AT5G65270.1 55.349 215 94 1 13 227 14 226 2.92e-85 253
Msa1239920 AT1G07410.1 55.656 221 87 3 8 228 5 214 6.84e-83 246
Msa1239920 AT1G16920.1 55.947 227 88 4 1 227 1 215 7.72e-83 246
Msa1239920 AT4G18430.1 58.947 190 75 1 1 190 1 187 1.54e-82 245
Msa1239920 AT4G18800.1 55.507 227 87 3 1 227 1 213 2.06e-82 245
Msa1239920 AT2G43130.1 53.097 226 86 3 7 227 3 213 5.05e-82 244
Msa1239920 AT1G09630.1 56.221 217 87 3 11 227 7 215 7.49e-82 244
Msa1239920 AT5G45750.1 53.744 227 93 3 1 227 1 215 1.17e-80 241
Msa1239920 AT5G60860.1 53.304 227 95 3 1 227 1 216 6.31e-80 239
Msa1239920 AT1G06400.1 52.381 231 90 3 1 227 1 215 8.86e-80 238
Msa1239920 AT3G15060.1 52.863 227 96 3 1 227 1 216 2.34e-79 237
Msa1239920 AT3G46830.1 63.743 171 62 0 14 184 10 180 1.75e-78 235
Msa1239920 AT3G46830.2 63.743 171 62 0 14 184 10 180 1.75e-78 235
Msa1239920 AT5G59150.1 63.158 171 63 0 14 184 10 180 1.10e-77 233
Msa1239920 AT2G31680.1 52.055 219 99 2 9 227 5 217 1.29e-77 233
Msa1239920 AT5G47520.1 52.968 219 98 3 9 227 7 220 2.10e-77 233
Msa1239920 AT1G05810.1 51.364 220 99 2 9 227 4 216 2.86e-77 232
Msa1239920 AT2G33870.1 57.447 188 77 1 1 188 1 185 6.91e-77 231
Msa1239920 AT1G05810.2 51.364 220 99 2 9 227 50 262 8.87e-77 233
Msa1239920 AT1G28550.1 57.979 188 76 1 1 188 1 185 9.59e-77 231
Msa1239920 AT3G07410.1 49.550 222 105 1 6 227 2 216 1.67e-74 225
Msa1239920 AT1G01200.1 51.598 219 96 4 11 225 23 235 3.88e-74 225
Msa1239920 AT1G18200.1 57.527 186 74 1 11 191 8 193 5.93e-71 216
Msa1239920 AT1G73640.1 57.865 178 75 0 7 184 4 181 9.90e-69 211
Msa1239920 AT4G17170.1 51.220 164 80 0 15 178 5 168 5.02e-57 180
Msa1239920 AT1G02130.1 42.991 214 105 3 14 227 6 202 2.02e-56 178
Msa1239920 AT4G35860.1 51.220 164 80 0 14 177 4 167 2.83e-56 178
Msa1239920 AT4G17160.1 50.610 164 81 0 15 178 5 168 8.11e-56 177
Msa1239920 AT5G47200.1 48.538 171 88 0 14 184 6 176 4.74e-55 175
Msa1239920 AT4G17530.1 48.538 171 88 0 14 184 6 176 5.06e-55 175
Msa1239920 AT5G59150.2 59.843 127 51 0 58 184 3 129 1.73e-51 165
Msa1239920 AT3G11730.1 45.614 171 93 0 14 184 6 176 9.30e-51 164
Msa1239920 AT5G59840.1 42.056 214 111 3 14 226 13 214 1.26e-50 164
Msa1239920 AT3G53610.2 42.056 214 111 3 14 226 13 214 2.32e-50 163
Msa1239920 AT3G53610.3 42.056 214 111 3 14 226 13 214 2.32e-50 163
Msa1239920 AT3G53610.1 42.056 214 111 3 14 226 13 214 2.32e-50 163
Msa1239920 AT3G54840.1 50.649 154 75 1 18 170 35 188 2.46e-50 163
Msa1239920 AT3G54840.2 50.649 154 75 1 18 170 35 188 2.80e-50 162
Msa1239920 AT3G46060.2 41.589 214 112 3 14 226 13 214 4.85e-50 162
Msa1239920 AT3G46060.3 41.589 214 112 3 14 226 13 214 4.85e-50 162
Msa1239920 AT3G46060.1 41.589 214 112 3 14 226 13 214 4.85e-50 162
Msa1239920 AT3G54840.3 50.327 153 75 1 19 170 2 154 5.71e-50 161
Msa1239920 AT3G09900.1 41.204 216 113 3 14 227 13 216 3.81e-49 160
Msa1239920 AT5G03520.1 42.130 216 109 4 14 227 13 214 4.71e-49 160
Msa1239920 AT4G19640.1 44.444 153 85 0 18 170 12 164 2.33e-45 150
Msa1239920 AT5G45130.1 44.444 153 85 0 18 170 12 164 2.96e-44 147
Msa1239920 AT1G43890.3 44.149 188 102 3 14 199 11 197 2.57e-43 145
Msa1239920 AT1G43890.1 44.149 188 102 3 14 199 11 197 2.57e-43 145
Msa1239920 AT1G43890.2 44.149 188 102 3 14 199 11 197 2.57e-43 145
Msa1239920 AT5G45130.2 44.371 151 84 0 20 170 22 172 3.07e-43 145
Msa1239920 AT4G39890.1 40.000 155 92 1 17 170 10 164 3.52e-43 145
Msa1239920 AT5G10260.1 38.961 154 94 0 17 170 10 163 5.58e-43 144
Msa1239920 AT2G22290.1 39.610 154 93 0 17 170 10 163 6.15e-43 144
Msa1239920 AT2G44610.1 40.260 154 92 0 17 170 10 163 2.58e-42 142
Msa1239920 AT4G35860.2 51.667 120 58 0 58 177 2 121 5.69e-41 138
Msa1239920 AT5G64990.1 36.646 161 102 0 17 177 8 168 2.44e-40 137
Msa1239920 AT5G03530.2 39.091 220 116 5 10 227 7 210 6.39e-40 136
Msa1239920 AT5G03530.1 39.091 220 116 5 10 227 7 210 6.39e-40 136
Msa1239920 AT4G09720.1 38.164 207 107 6 16 215 8 200 3.07e-39 135
Msa1239920 AT4G09720.4 37.264 212 107 6 16 215 8 205 1.81e-38 133
Msa1239920 AT1G22740.1 40.000 165 92 3 16 173 8 172 1.33e-37 130
Msa1239920 AT5G64990.2 35.119 168 102 1 17 177 8 175 1.54e-37 130
Msa1239920 AT4G09720.3 36.239 218 107 6 16 215 8 211 2.32e-37 130
Msa1239920 AT1G52280.1 41.358 162 88 3 16 170 8 169 3.28e-37 129
Msa1239920 AT3G18820.1 41.975 162 87 3 16 170 8 169 5.98e-37 129
Msa1239920 AT1G49300.2 40.719 167 92 3 16 175 8 174 1.05e-36 128
Msa1239920 AT1G49300.1 40.719 167 92 3 16 175 8 174 1.05e-36 128
Msa1239920 AT5G03520.2 39.106 179 93 4 51 227 40 204 1.59e-36 127
Msa1239920 AT3G16100.1 41.358 162 88 3 16 170 8 169 1.97e-36 127
Msa1239920 AT4G19640.2 44.444 126 70 0 18 143 12 137 3.55e-36 125
Msa1239920 AT4G19640.3 37.288 177 105 2 18 189 12 187 6.72e-36 125
Msa1239920 AT2G21880.1 39.394 165 93 3 16 173 9 173 8.91e-35 123
Msa1239920 AT3G09910.3 43.558 163 89 3 10 170 7 168 3.53e-31 114
Msa1239920 AT3G09910.1 43.558 163 89 3 10 170 7 168 3.53e-31 114
Msa1239920 AT3G09910.2 43.558 163 89 3 10 170 7 168 3.53e-31 114
Msa1239920 AT3G09910.5 43.558 163 89 3 10 170 7 168 4.13e-31 113
Msa1239920 AT3G09910.4 43.558 163 89 3 10 170 7 168 4.13e-31 113
Msa1239920 AT5G39620.1 35.321 218 113 8 17 225 6 204 3.68e-30 111
Msa1239920 AT5G46025.1 51.961 102 48 1 78 178 6 107 1.26e-28 104
Msa1239920 AT5G55080.1 34.161 161 103 2 17 177 14 171 3.58e-28 106
Msa1239920 AT4G09720.6 36.667 180 93 6 43 215 1 166 1.49e-27 103
Msa1239920 AT4G09720.5 36.667 180 93 6 43 215 1 166 1.49e-27 103
Msa1239920 AT4G09720.2 36.667 180 93 6 43 215 1 166 1.49e-27 103
Msa1239920 AT2G21880.4 37.162 148 86 3 33 173 1 148 3.61e-26 100
Msa1239920 AT2G21880.3 37.162 148 86 3 33 173 1 148 3.61e-26 100
Msa1239920 AT2G21880.2 34.545 165 93 4 16 173 9 165 5.30e-25 98.2
Msa1239920 AT5G20020.1 31.765 170 112 4 9 177 5 171 1.55e-23 94.7
Msa1239920 AT5G55190.1 31.765 170 112 4 9 177 5 171 1.93e-23 94.4
Msa1239920 AT5G20010.1 31.765 170 112 4 9 177 5 171 2.05e-23 94.4
Msa1239920 AT2G44690.1 34.731 167 95 5 16 170 18 182 3.59e-21 88.2
Msa1239920 AT4G35020.1 32.335 167 99 6 16 170 6 170 1.14e-17 78.6
Msa1239920 AT4G35020.2 32.335 167 99 6 16 170 6 170 1.14e-17 78.6
Msa1239920 AT4G35020.3 32.335 167 99 6 16 170 6 170 1.14e-17 78.6
Msa1239920 AT3G51300.1 32.121 165 98 6 18 170 8 170 7.59e-17 76.3
Msa1239920 AT1G20090.1 31.138 167 101 6 16 170 5 169 1.49e-16 75.5
Msa1239920 AT4G28950.1 30.909 165 102 5 16 170 6 168 1.65e-16 75.5
Msa1239920 AT3G48040.1 30.539 167 102 5 16 170 8 172 2.33e-16 75.1
Msa1239920 AT5G45970.1 30.539 167 102 5 16 170 6 170 2.71e-16 74.7
Msa1239920 AT1G75840.1 30.539 167 102 6 16 170 6 170 2.79e-16 74.7
Msa1239920 AT5G62880.1 29.940 167 103 5 16 170 8 172 3.04e-16 75.1
Msa1239920 AT2G17800.2 31.138 167 101 6 16 170 6 170 1.28e-15 72.8
Msa1239920 AT2G17800.1 31.138 167 101 6 16 170 6 170 1.28e-15 72.8
Msa1239920 AT4G35950.1 30.769 169 99 6 16 170 6 170 1.44e-15 72.8
Msa1239920 AT5G62880.2 30.968 155 93 5 18 160 10 162 4.20e-15 71.6
Msa1239920 AT3G48040.2 30.968 155 93 5 18 160 10 162 5.59e-15 70.9
Msa1239920 AT4G35020.4 33.333 114 73 3 18 130 8 119 1.88e-14 68.6
Msa1239920 AT4G35020.5 33.333 114 73 3 18 130 8 119 1.88e-14 68.6
Msa1239920 AT4G08190.1 50.000 64 29 1 107 170 67 127 3.69e-14 67.4

Find 52 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGAATAAACAGTTATTT+TGG 0.170688 8_2:-22050125 Msa1239920:three_prime_UTR
CAGATGGACATGAACGAAAT+TGG 0.196371 8_2:-22050426 Msa1239920:CDS
TTTGACCAAGACTGTTCTTA+TGG 0.268890 8_2:-22052040 Msa1239920:CDS
TGTGGTTGATGAGGCAATTT+TGG 0.271193 8_2:+22052401 None:intergenic
ATTTGAGGGAACAAAATTAT+TGG 0.279920 8_2:-22050386 Msa1239920:CDS
GGCTCAGTTTCAAGGTGATT+TGG 0.287683 8_2:-22052196 Msa1239920:CDS
AACTTGTCAAGGCTCAGATT+TGG 0.350264 8_2:-22052011 Msa1239920:CDS
AAACGTATGAGGAAGGATTA+AGG 0.356859 8_2:+22052535 None:intergenic
AACATAGTTGTCATGCTTGT+TGG 0.359266 8_2:-22050628 Msa1239920:CDS
CTTCCTCGATAGGCACTTCT+CGG 0.362301 8_2:+22050581 None:intergenic
ACTTGTCAAGGCTCAGATTT+GGG 0.367020 8_2:-22052010 Msa1239920:CDS
TCATTGAAAGCGTTCTTGTT+AGG 0.381555 8_2:+22052478 None:intergenic
TTGAAATCTAAAGCTACAAT+TGG 0.411996 8_2:-22052072 Msa1239920:CDS
ATATACAAAATCAATAGAAC+AGG 0.422311 8_2:+22050284 None:intergenic
TTTCAATATGGTTGAAGGTA+TGG 0.432363 8_2:+22050686 None:intergenic
GGGTATTGATTATATGTTCA+AGG 0.446874 8_2:-22052166 Msa1239920:CDS
GCATATTACAGAGGTGCAAC+TGG 0.448807 8_2:-22050739 Msa1239920:CDS
CTGATTGGTGACTCTGGTGT+TGG 0.451928 8_2:-22052138 Msa1239920:CDS
AATGTAGAACCAGCTTTCCT+TGG 0.453949 8_2:-22050496 Msa1239920:CDS
AGAAAGGAAAGAAACGTATG+AGG 0.458275 8_2:+22052524 None:intergenic
AGAAAGAATGACAGAAAGAA+AGG 0.466225 8_2:+22052508 None:intergenic
AAGTCTTTGGCTTCCTCGAT+AGG 0.469086 8_2:+22050571 None:intergenic
TAAAGTAAATCTTGAATTTG+AGG 0.472846 8_2:-22050401 Msa1239920:CDS
AAGAGAATGGCTCAGTTTCA+AGG 0.475792 8_2:-22052204 Msa1239920:exon
AGATGGACATGAACGAAATT+GGG 0.476402 8_2:-22050425 Msa1239920:CDS
GTTGTTCTGATTGGTGACTC+TGG 0.476492 8_2:-22052144 Msa1239920:CDS
ATGTTCAAGGTTGTTCTGAT+TGG 0.477877 8_2:-22052153 Msa1239920:CDS
AAAGTAAATCTTGAATTTGA+GGG 0.497241 8_2:-22050400 Msa1239920:CDS
AGGAAAGAAACGTATGAGGA+AGG 0.508347 8_2:+22052528 None:intergenic
ATGATCCATAAGAACAGTCT+TGG 0.515888 8_2:+22052035 None:intergenic
ATGGTTGAAGGTATGGCGCT+TGG 0.524601 8_2:+22050693 None:intergenic
CCTTCAACCATATTGAAAAG+TGG 0.524738 8_2:-22050681 Msa1239920:CDS
GAGAGAAGACCAAGGAAAGC+TGG 0.526036 8_2:+22050487 None:intergenic
TATGGATCATAAACTTGTCA+AGG 0.537001 8_2:-22052022 Msa1239920:CDS
GGGATACTGCTGGTCAAGAA+AGG 0.539209 8_2:-22051990 Msa1239920:intron
TCAAGGTGATTTGGATCATG+AGG 0.547424 8_2:-22052187 Msa1239920:CDS
TGATAATGCAAAACCCACCT+TGG 0.548683 8_2:+22052267 None:intergenic
AATATGCAGTTGTAATTGCT+TGG 0.550879 8_2:+22050755 None:intergenic
AAGAAACACATCACTGCAGA+TGG 0.556898 8_2:-22050442 Msa1239920:CDS
CATCAAACATTGAAGATCCA+AGG 0.561570 8_2:-22052284 Msa1239920:five_prime_UTR
GCTCAGATTTGGGATACTGC+TGG 0.571910 8_2:-22052000 Msa1239920:CDS
CAAGGTGATTTGGATCATGA+GGG 0.581854 8_2:-22052186 Msa1239920:CDS
GCACTTCTCGGATTGAACTC+AGG 0.592554 8_2:+22050593 None:intergenic
AAATAACATAGTAACTTCAA+AGG 0.603788 8_2:+22050181 None:intergenic
AAAGACTTAGCAAAACAGAA+AGG 0.614557 8_2:-22050556 Msa1239920:CDS
AAACATTGAAGATCCAAGGT+GGG 0.619334 8_2:-22052280 Msa1239920:five_prime_UTR
CAAACATTGAAGATCCAAGG+TGG 0.667974 8_2:-22052281 Msa1239920:five_prime_UTR
TATACAAAATCAATAGAACA+GGG 0.677690 8_2:+22050285 None:intergenic
AATCCGAGAAGTGCCTATCG+AGG 0.678608 8_2:-22050584 Msa1239920:CDS
ATTACAACTGCATATTACAG+AGG 0.695575 8_2:-22050748 Msa1239920:CDS
ATACAAAATCAATAGAACAG+GGG 0.702184 8_2:+22050286 None:intergenic
ATATTTGTGAGAGAAGACCA+AGG 0.791204 8_2:+22050479 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATTTTATTATTCTATG+TGG - chr8_2:22050725-22050744 Msa1239920:CDS 10.0%
!! TATAATATAGTAAAAATGTT+TGG - chr8_2:22050820-22050839 Msa1239920:intron 10.0%
!! AAAAGAACAAAAGAAAATTT+AGG + chr8_2:22050645-22050664 None:intergenic 15.0%
!!! ATGTTATTTTATGTTGAATT+TGG - chr8_2:22050868-22050887 Msa1239920:intron 15.0%
!!! TAAAATCTTTTATTGACATT+GGG + chr8_2:22050897-22050916 None:intergenic 15.0%
!!! ATAAAATCTTTTATTGACAT+TGG + chr8_2:22050898-22050917 None:intergenic 15.0%
!!! TTGTTAGTTTATGTTAAATT+TGG - chr8_2:22051189-22051208 Msa1239920:intron 15.0%
!!! ATTTTAAATTTGATACATTC+AGG - chr8_2:22051672-22051691 Msa1239920:intron 15.0%
!!! TTTTAAATTTGATACATTCA+GGG - chr8_2:22051673-22051692 Msa1239920:intron 15.0%
!! AAATACATCAAAAATTTGAA+GGG + chr8_2:22052377-22052396 None:intergenic 15.0%
!! AAAATACATCAAAAATTTGA+AGG + chr8_2:22052378-22052397 None:intergenic 15.0%
!!! AATTTTTGATGTATTTTTCA+AGG - chr8_2:22052381-22052400 Msa1239920:five_prime_UTR 15.0%
!!! AAATGAATAAACAGTTATTT+TGG - chr8_2:22052483-22052502 Msa1239920:five_prime_UTR 15.0%
!!! TGGTCTTTTTTTTTTATGTT+AGG + chr8_2:22050294-22050313 None:intergenic 20.0%
!! ATGTTTGATGCATAAAAATT+TGG + chr8_2:22050314-22050333 None:intergenic 20.0%
!!! AAAATGTGAATGATTTTCAT+TGG - chr8_2:22050683-22050702 Msa1239920:CDS 20.0%
!!! TTTTTAAAGTTGATTTACCA+GGG - chr8_2:22050981-22051000 Msa1239920:intron 20.0%
!! TGTCACAAAATAAATGAATT+CGG + chr8_2:22051114-22051133 None:intergenic 20.0%
!! TGTTGCATCATAAATAAATT+TGG + chr8_2:22051406-22051425 None:intergenic 20.0%
!!! TGTGAAAATTTTTGTAAGTT+TGG - chr8_2:22051543-22051562 Msa1239920:intron 20.0%
!! TAAAGTAAATCTTGAATTTG+AGG - chr8_2:22052207-22052226 Msa1239920:exon 20.0%
!! AAAGTAAATCTTGAATTTGA+GGG - chr8_2:22052208-22052227 Msa1239920:exon 20.0%
!! TATACAAAATCAATAGAACA+GGG + chr8_2:22052326-22052345 None:intergenic 20.0%
!! ATATACAAAATCAATAGAAC+AGG + chr8_2:22052327-22052346 None:intergenic 20.0%
!!! ATTTTTCAAGGATAGTTATT+AGG - chr8_2:22052393-22052412 Msa1239920:five_prime_UTR 20.0%
!! AAATAACATAGTAACTTCAA+AGG + chr8_2:22052430-22052449 None:intergenic 20.0%
!!! AGTTACTATGTTATTTTGAT+TGG - chr8_2:22052434-22052453 Msa1239920:five_prime_UTR 20.0%
!! TTTTTGTGTTCTATAGAAAG+AGG + chr8_2:22050255-22050274 None:intergenic 25.0%
!! TATCACATTCAGTTTTCAAA+AGG - chr8_2:22050359-22050378 Msa1239920:CDS 25.0%
!! ATCACATTCAGTTTTCAAAA+GGG - chr8_2:22050360-22050379 Msa1239920:CDS 25.0%
! AATCACATAGAAAAAGAGAA+TGG - chr8_2:22050391-22050410 Msa1239920:CDS 25.0%
!! TTGAAATCTAAAGCTACAAT+TGG - chr8_2:22050536-22050555 Msa1239920:CDS 25.0%
!!! GTTTTTAAAGTTGATTTACC+AGG - chr8_2:22050980-22050999 Msa1239920:intron 25.0%
!!! TCATTTATTTTGTGACATAG+TGG - chr8_2:22051117-22051136 Msa1239920:intron 25.0%
!!! CATTTATTTTGTGACATAGT+GGG - chr8_2:22051118-22051137 Msa1239920:intron 25.0%
! AATTGTTCTAATTTCAAGCT+TGG + chr8_2:22051295-22051314 None:intergenic 25.0%
! TTCATAAGCAAACTCAAAAT+TGG - chr8_2:22051314-22051333 Msa1239920:intron 25.0%
! AAACACATTATCATGTCAAT+TGG + chr8_2:22051464-22051483 None:intergenic 25.0%
! ATTTGAGGGAACAAAATTAT+TGG - chr8_2:22052222-22052241 Msa1239920:five_prime_UTR 25.0%
! ATACAAAATCAATAGAACAG+GGG + chr8_2:22052325-22052344 None:intergenic 25.0%
! AATTTGAAGGGCAAAAAATA+TGG + chr8_2:22052365-22052384 None:intergenic 25.0%
!!! TTTTGGTTCATAAATTTGTG+AGG - chr8_2:22052500-22052519 Msa1239920:five_prime_UTR 25.0%
AGAAAGAATGACAGAAAGAA+AGG + chr8_2:22050103-22050122 None:intergenic 30.0%
!! GGGTATTGATTATATGTTCA+AGG - chr8_2:22050442-22050461 Msa1239920:CDS 30.0%
! GAAAATCTCAGCTTTTGAAT+AGG - chr8_2:22050492-22050511 Msa1239920:CDS 30.0%
TATGGATCATAAACTTGTCA+AGG - chr8_2:22050586-22050605 Msa1239920:CDS 30.0%
!!! TGCTTTTGAGTTTGATCATA+AGG + chr8_2:22051022-22051041 None:intergenic 30.0%
TTATTTATGATGCAACACAG+TGG - chr8_2:22051409-22051428 Msa1239920:intron 30.0%
TATTTATGATGCAACACAGT+GGG - chr8_2:22051410-22051429 Msa1239920:intron 30.0%
ACTAACAAAAGACACATTTG+AGG + chr8_2:22051602-22051621 None:intergenic 30.0%
CGATTCTGTTAGTAATTCAA+TGG + chr8_2:22051634-22051653 None:intergenic 30.0%
AATTACTAACAGAATCGACT+TGG - chr8_2:22051637-22051656 Msa1239920:intron 30.0%
! ATTACTAACAGAATCGACTT+GGG - chr8_2:22051638-22051657 Msa1239920:intron 30.0%
! ACACGAGTAAACATCATTTT+GGG + chr8_2:22051730-22051749 None:intergenic 30.0%
! AACACGAGTAAACATCATTT+TGG + chr8_2:22051731-22051750 None:intergenic 30.0%
GACATGCATAATGTATTTGA+AGG + chr8_2:22051791-22051810 None:intergenic 30.0%
AATATGCAGTTGTAATTGCT+TGG + chr8_2:22051856-22051875 None:intergenic 30.0%
ATTACAACTGCATATTACAG+AGG - chr8_2:22051860-22051879 Msa1239920:intron 30.0%
TTTCAATATGGTTGAAGGTA+TGG + chr8_2:22051925-22051944 None:intergenic 30.0%
!! CAACTATGTTTTTATCTGCA+TGG + chr8_2:22051970-22051989 None:intergenic 30.0%
! TTTCTGTTTTGCTAAGTCTT+TGG + chr8_2:22052053-22052072 None:intergenic 30.0%
AAAGACTTAGCAAAACAGAA+AGG - chr8_2:22052052-22052071 Msa1239920:CDS 30.0%
! TTTTTGGATTTTTGACACTC+TGG + chr8_2:22052262-22052281 None:intergenic 30.0%
AAACGTATGAGGAAGGATTA+AGG + chr8_2:22050076-22050095 None:intergenic 35.0%
AGAAAGGAAAGAAACGTATG+AGG + chr8_2:22050087-22050106 None:intergenic 35.0%
!! TCATTGAAAGCGTTCTTGTT+AGG + chr8_2:22050133-22050152 None:intergenic 35.0%
GTAAGAGAAGAGAAAAAGTG+TGG + chr8_2:22050228-22050247 None:intergenic 35.0%
CATCAAACATTGAAGATCCA+AGG - chr8_2:22050324-22050343 Msa1239920:CDS 35.0%
AAACATTGAAGATCCAAGGT+GGG - chr8_2:22050328-22050347 Msa1239920:CDS 35.0%
ATGTTCAAGGTTGTTCTGAT+TGG - chr8_2:22050455-22050474 Msa1239920:CDS 35.0%
TTTGACCAAGACTGTTCTTA+TGG - chr8_2:22050568-22050587 Msa1239920:CDS 35.0%
ATGATCCATAAGAACAGTCT+TGG + chr8_2:22050576-22050595 None:intergenic 35.0%
!! TTTGGAAGTTGATGACTTCT+TGG - chr8_2:22050838-22050857 Msa1239920:intron 35.0%
TTATGCATTCACAGAGTCAA+CGG - chr8_2:22050914-22050933 Msa1239920:intron 35.0%
!! GGTTGTTCTAATTTTAACCC+TGG + chr8_2:22051001-22051020 None:intergenic 35.0%
GTCATCTAATCTTGATGCAA+CGG - chr8_2:22051044-22051063 Msa1239920:intron 35.0%
CTATGCAATCTTTGACAGTA+GGG + chr8_2:22051218-22051237 None:intergenic 35.0%
TCTATGCAATCTTTGACAGT+AGG + chr8_2:22051219-22051238 None:intergenic 35.0%
! GAGTCGCAATTCAAAGTTTT+TGG + chr8_2:22051357-22051376 None:intergenic 35.0%
ATTTATGATGCAACACAGTG+GGG - chr8_2:22051411-22051430 Msa1239920:intron 35.0%
! TTTTGATCCATAAGTACGTG+TGG - chr8_2:22051504-22051523 Msa1239920:intron 35.0%
CTAACTAACAAGAGACACAT+TGG + chr8_2:22051573-22051592 None:intergenic 35.0%
!! TTACTAACAGAATCGACTTG+GGG - chr8_2:22051639-22051658 Msa1239920:intron 35.0%
!! CCACTTTTCAATATGGTTGA+AGG + chr8_2:22051930-22051949 None:intergenic 35.0%
CCTTCAACCATATTGAAAAG+TGG - chr8_2:22051927-22051946 Msa1239920:intron 35.0%
!!! CATCTAGCCACTTTTCAATA+TGG + chr8_2:22051937-22051956 None:intergenic 35.0%
AACATAGTTGTCATGCTTGT+TGG - chr8_2:22051980-22051999 Msa1239920:intron 35.0%
ATATTTGTGAGAGAAGACCA+AGG + chr8_2:22052132-22052151 None:intergenic 35.0%
AGATGGACATGAACGAAATT+GGG - chr8_2:22052183-22052202 Msa1239920:CDS 35.0%
! GCAACAACTGAATCTCTTTT+TGG + chr8_2:22052278-22052297 None:intergenic 35.0%
AGGAAAGAAACGTATGAGGA+AGG + chr8_2:22050083-22050102 None:intergenic 40.0%
!!! TGTGGTTGATGAGGCAATTT+TGG + chr8_2:22050210-22050229 None:intergenic 40.0%
! GAGAAAAAGTGTGGTTGATG+AGG + chr8_2:22050219-22050238 None:intergenic 40.0%
CAAACATTGAAGATCCAAGG+TGG - chr8_2:22050327-22050346 Msa1239920:CDS 40.0%
! TGATAATGCAAAACCCACCT+TGG + chr8_2:22050344-22050363 None:intergenic 40.0%
AAGAGAATGGCTCAGTTTCA+AGG - chr8_2:22050404-22050423 Msa1239920:CDS 40.0%
! TCAAGGTGATTTGGATCATG+AGG - chr8_2:22050421-22050440 Msa1239920:CDS 40.0%
! CAAGGTGATTTGGATCATGA+GGG - chr8_2:22050422-22050441 Msa1239920:CDS 40.0%
AACTTGTCAAGGCTCAGATT+TGG - chr8_2:22050597-22050616 Msa1239920:CDS 40.0%
ACTTGTCAAGGCTCAGATTT+GGG - chr8_2:22050598-22050617 Msa1239920:CDS 40.0%
TAGAGCCGATCAAGATTTGA+TGG - chr8_2:22050941-22050960 Msa1239920:intron 40.0%
CAGAGCCATCAAATCTTGAT+CGG + chr8_2:22050949-22050968 None:intergenic 40.0%
AGCTTGGAATCAAAGTCATC+CGG + chr8_2:22051279-22051298 None:intergenic 40.0%
TTTATGATGCAACACAGTGG+GGG - chr8_2:22051412-22051431 Msa1239920:intron 40.0%
GACAATGCCTCACACATTTA+TGG - chr8_2:22051704-22051723 Msa1239920:intron 40.0%
! TTTTGGGCCATAAATGTGTG+AGG + chr8_2:22051714-22051733 None:intergenic 40.0%
TAATTGCTTGGTACCTGTCA+CGG + chr8_2:22051844-22051863 None:intergenic 40.0%
AATGTAGAACCAGCTTTCCT+TGG - chr8_2:22052112-22052131 Msa1239920:CDS 40.0%
AAGAAACACATCACTGCAGA+TGG - chr8_2:22052166-22052185 Msa1239920:CDS 40.0%
CAGATGGACATGAACGAAAT+TGG - chr8_2:22052182-22052201 Msa1239920:CDS 40.0%
GGCTCAGTTTCAAGGTGATT+TGG - chr8_2:22050412-22050431 Msa1239920:CDS 45.0%
! GTTGTTCTGATTGGTGACTC+TGG - chr8_2:22050464-22050483 Msa1239920:CDS 45.0%
GATTCACAGTGTTAGCAGCT+TGG - chr8_2:22051237-22051256 Msa1239920:intron 45.0%
GACAATGCCACACGTACTTA+TGG + chr8_2:22051514-22051533 None:intergenic 45.0%
ATAATGTTGCCATCCGTGAC+AGG - chr8_2:22051828-22051847 Msa1239920:intron 45.0%
! GCATATTACAGAGGTGCAAC+TGG - chr8_2:22051869-22051888 Msa1239920:intron 45.0%
! AAGTCTTTGGCTTCCTCGAT+AGG + chr8_2:22052040-22052059 None:intergenic 45.0%
! CTGATTGGTGACTCTGGTGT+TGG - chr8_2:22050470-22050489 Msa1239920:CDS 50.0%
! GCTCAGATTTGGGATACTGC+TGG - chr8_2:22050608-22050627 Msa1239920:CDS 50.0%
GGGATACTGCTGGTCAAGAA+AGG - chr8_2:22050618-22050637 Msa1239920:CDS 50.0%
TGTTAGCAGCTTGGAGCCAT+TGG - chr8_2:22051246-22051265 Msa1239920:intron 50.0%
TGGAGCCATTGGATCGAAAC+CGG - chr8_2:22051257-22051276 Msa1239920:intron 50.0%
GTCATCCGGTTTCGATCCAA+TGG + chr8_2:22051265-22051284 None:intergenic 50.0%
! ATGGTTGAAGGTATGGCGCT+TGG + chr8_2:22051918-22051937 None:intergenic 50.0%
GCACTTCTCGGATTGAACTC+AGG + chr8_2:22052018-22052037 None:intergenic 50.0%
!! AATCCGAGAAGTGCCTATCG+AGG - chr8_2:22052024-22052043 Msa1239920:CDS 50.0%
CTTCCTCGATAGGCACTTCT+CGG + chr8_2:22052030-22052049 None:intergenic 50.0%
GAGAGAAGACCAAGGAAAGC+TGG + chr8_2:22052124-22052143 None:intergenic 50.0%
TGCTTGGTACCTGTCACGGA+TGG + chr8_2:22051840-22051859 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 22050049 22052581 22050049 ID=Msa1239920;Name=Msa1239920
chr8_2 mRNA 22050049 22052581 22050049 ID=Msa1239920-mRNA-1;Parent=Msa1239920;Name=Msa1239920-mRNA-1;_AED=0.03;_eAED=0.03;_QI=361|1|1|1|1|1|2|272|229
chr8_2 exon 22050049 22050780 22050049 ID=Msa1239920-mRNA-1:exon:7870;Parent=Msa1239920-mRNA-1
chr8_2 exon 22051991 22052581 22051991 ID=Msa1239920-mRNA-1:exon:7869;Parent=Msa1239920-mRNA-1
chr8_2 five_prime_UTR 22052221 22052581 22052221 ID=Msa1239920-mRNA-1:five_prime_utr;Parent=Msa1239920-mRNA-1
chr8_2 CDS 22051991 22052220 22051991 ID=Msa1239920-mRNA-1:cds;Parent=Msa1239920-mRNA-1
chr8_2 CDS 22050321 22050780 22050321 ID=Msa1239920-mRNA-1:cds;Parent=Msa1239920-mRNA-1
chr8_2 three_prime_UTR 22050049 22050320 22050049 ID=Msa1239920-mRNA-1:three_prime_utr;Parent=Msa1239920-mRNA-1
Gene Sequence

>Msa1239920

ATGGCTCAGTTTCAAGGTGATTTGGATCATGAGGGTATTGATTATATGTTCAAGGTTGTTCTGATTGGTGACTCTGGTGTTGGAAAATCTCAGCTTTTGAATAGGTTTGTTAGAAATGAGTTTCATTTGAAATCTAAAGCTACAATTGGTGTTGAGTTTTTGACCAAGACTGTTCTTATGGATCATAAACTTGTCAAGGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTACCAAGCAATTACAACTGCATATTACAGAGGTGCAACTGGTGCATTGCTCACATATGACATAACCAAGCGCCATACCTTCAACCATATTGAAAAGTGGCTAGATGAACTACATAACCATGCAGATAAAAACATAGTTGTCATGCTTGTTGGCAACAAGTCTGACCTGAGTTCAATCCGAGAAGTGCCTATCGAGGAAGCCAAAGACTTAGCAAAACAGAAAGGTCTCTACTTCATTGAGACATCAGCACTCGACTCAAGCAATGTAGAACCAGCTTTCCTTGGTCTTCTCTCACAAATATATGTAACAATGAGTAAGAAACACATCACTGCAGATGGACATGAACGAAATTGGGATAAAGTAAATCTTGAATTTGAGGGAACAAAATTATTGGTCTCGTCGCAAGAACCAGAGTGTCAAAAATCCAAAAAGAGATTCAGTTGTTGCAGTGTTTTTTAG

Protein sequence

>Msa1239920

MAQFQGDLDHEGIDYMFKVVLIGDSGVGKSQLLNRFVRNEFHLKSKATIGVEFLTKTVLMDHKLVKAQIWDTAGQERYQAITTAYYRGATGALLTYDITKRHTFNHIEKWLDELHNHADKNIVVMLVGNKSDLSSIREVPIEEAKDLAKQKGLYFIETSALDSSNVEPAFLGLLSQIYVTMSKKHITADGHERNWDKVNLEFEGTKLLVSSQEPECQKSKKRFSCCSVF*