Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944700 | sp|Q5XVI1|SINE1_ARATH | 52.104 | 618 | 216 | 20 | 1 | 596 | 1 | 560 | 0.0 | 532 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944700 | A0A072UIF3 | 96.007 | 601 | 19 | 2 | 1 | 596 | 1 | 601 | 0.0 | 1186 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0944700 | 0.854306 | 1.343517e-61 | -8.615850e-47 |
| Msa0024550 | Msa0944700 | 0.800222 | 1.594932e-48 | -8.615850e-47 |
| Msa0028420 | Msa0944700 | 0.828301 | 9.700642e-55 | -8.615850e-47 |
| Msa0076250 | Msa0944700 | 0.803162 | 3.976115e-49 | -8.615850e-47 |
| Msa0081090 | Msa0944700 | 0.819432 | 1.164755e-52 | -8.615850e-47 |
| Msa0090400 | Msa0944700 | 0.821260 | 4.437971e-53 | -8.615850e-47 |
| Msa0092790 | Msa0944700 | 0.834481 | 2.924062e-56 | -8.615850e-47 |
| Msa0117480 | Msa0944700 | 0.813006 | 3.184923e-51 | -8.615850e-47 |
| Msa0120400 | Msa0944700 | 0.803374 | 3.593663e-49 | -8.615850e-47 |
| Msa0626450 | Msa0944700 | 0.807941 | 3.952182e-50 | -8.615850e-47 |
| Msa0626490 | Msa0944700 | 0.806589 | 7.642417e-50 | -8.615850e-47 |
| Msa0637560 | Msa0944700 | 0.810805 | 9.600800e-51 | -8.615850e-47 |
| Msa0637580 | Msa0944700 | 0.817756 | 2.796112e-52 | -8.615850e-47 |
| Msa0664060 | Msa0944700 | 0.801223 | 9.964386e-49 | -8.615850e-47 |
| Msa0664600 | Msa0944700 | 0.806005 | 1.014862e-49 | -8.615850e-47 |
| Msa0683470 | Msa0944700 | 0.802041 | 6.770732e-49 | -8.615850e-47 |
| Msa0739730 | Msa0944700 | 0.805257 | 1.456912e-49 | -8.615850e-47 |
| Msa0754520 | Msa0944700 | 0.802873 | 4.562249e-49 | -8.615850e-47 |
| Msa0795870 | Msa0944700 | 0.858801 | 6.420514e-63 | -8.615850e-47 |
| Msa0833220 | Msa0944700 | 0.816688 | 4.861946e-52 | -8.615850e-47 |
| Msa0833650 | Msa0944700 | 0.857029 | 2.155941e-62 | -8.615850e-47 |
| Msa0124060 | Msa0944700 | 0.844207 | 8.721135e-59 | -8.615850e-47 |
| Msa0124280 | Msa0944700 | 0.815720 | 8.000463e-52 | -8.615850e-47 |
| Msa0131900 | Msa0944700 | 0.805358 | 1.387728e-49 | -8.615850e-47 |
| Msa0137880 | Msa0944700 | 0.803237 | 3.836589e-49 | -8.615850e-47 |
| Msa0168500 | Msa0944700 | 0.824816 | 6.576336e-54 | -8.615850e-47 |
| Msa0225860 | Msa0944700 | 0.813124 | 3.000114e-51 | -8.615850e-47 |
| Msa0369790 | Msa0944700 | 0.802437 | 5.613512e-49 | -8.615850e-47 |
| Msa0371030 | Msa0944700 | 0.830086 | 3.579416e-55 | -8.615850e-47 |
| Msa0378720 | Msa0944700 | 0.809185 | 2.143589e-50 | -8.615850e-47 |
| Msa0385390 | Msa0944700 | 0.807103 | 5.953477e-50 | -8.615850e-47 |
| Msa0392490 | Msa0944700 | 0.802944 | 4.411411e-49 | -8.615850e-47 |
| Msa0392510 | Msa0944700 | 0.800248 | 1.575130e-48 | -8.615850e-47 |
| Msa0415320 | Msa0944700 | 0.812460 | 4.193699e-51 | -8.615850e-47 |
| Msa0419410 | Msa0944700 | 0.802799 | 4.726629e-49 | -8.615850e-47 |
| Msa0464000 | Msa0944700 | 0.801685 | 8.011926e-49 | -8.615850e-47 |
| Msa0474730 | Msa0944700 | 0.807338 | 5.307716e-50 | -8.615850e-47 |
| Msa0239570 | Msa0944700 | 0.803246 | 3.820580e-49 | -8.615850e-47 |
| Msa0267110 | Msa0944700 | 0.811398 | 7.141818e-51 | -8.615850e-47 |
| Msa0287740 | Msa0944700 | 0.801455 | 8.933262e-49 | -8.615850e-47 |
| Msa0292400 | Msa0944700 | 0.803524 | 3.346422e-49 | -8.615850e-47 |
| Msa0298470 | Msa0944700 | 0.837058 | 6.503198e-57 | -8.615850e-47 |
| Msa0348880 | Msa0944700 | 0.815958 | 7.079344e-52 | -8.615850e-47 |
| Msa0487630 | Msa0944700 | 0.810028 | 1.413225e-50 | -8.615850e-47 |
| Msa0530780 | Msa0944700 | 0.821897 | 3.161876e-53 | -8.615850e-47 |
| Msa0535040 | Msa0944700 | 0.809809 | 1.575128e-50 | -8.615850e-47 |
| Msa0580370 | Msa0944700 | 0.865882 | 4.277214e-65 | -8.615850e-47 |
| Msa0582450 | Msa0944700 | 0.810450 | 1.146075e-50 | -8.615850e-47 |
| Msa0583830 | Msa0944700 | 0.844298 | 8.245640e-59 | -8.615850e-47 |
| Msa0586190 | Msa0944700 | 0.805641 | 1.209967e-49 | -8.615850e-47 |
| Msa0587620 | Msa0944700 | 0.808880 | 2.491963e-50 | -8.615850e-47 |
| Msa0873730 | Msa0944700 | 0.812789 | 3.553353e-51 | -8.615850e-47 |
| Msa0896540 | Msa0944700 | 0.807665 | 4.524925e-50 | -8.615850e-47 |
| Msa0902510 | Msa0944700 | 0.816083 | 6.639320e-52 | -8.615850e-47 |
| Msa0935470 | Msa0944700 | 0.808388 | 3.174819e-50 | -8.615850e-47 |
| Msa0938820 | Msa0944700 | 0.804065 | 2.583228e-49 | -8.615850e-47 |
| Msa0944700 | Msa0945110 | 0.819157 | 1.345836e-52 | -8.615850e-47 |
| Msa0944700 | Msa1020670 | 0.814906 | 1.213443e-51 | -8.615850e-47 |
| Msa0944700 | Msa1045140 | 0.823336 | 1.462916e-53 | -8.615850e-47 |
| Msa0944700 | Msa1051830 | 0.813273 | 2.782036e-51 | -8.615850e-47 |
| Msa0944700 | Msa1103990 | 0.825919 | 3.604764e-54 | -8.615850e-47 |
| Msa0944700 | Msa1123380 | 0.820719 | 5.911213e-53 | -8.615850e-47 |
| Msa0944700 | Msa1132840 | 0.863490 | 2.398912e-64 | -8.615850e-47 |
| Msa0944700 | Msa1177320 | 0.811626 | 6.371633e-51 | -8.615850e-47 |
| Msa0944700 | Msa1208950 | 0.803844 | 2.871617e-49 | -8.615850e-47 |
| Msa0944700 | Msa1228200 | 0.802743 | 4.852729e-49 | -8.615850e-47 |
| Msa0944700 | Msa1303250 | 0.801604 | 8.324279e-49 | -8.615850e-47 |
| Msa0944700 | Msa1346280 | 0.804754 | 1.855782e-49 | -8.615850e-47 |
| Msa0944700 | Msa1374550 | 0.815967 | 7.045452e-52 | -8.615850e-47 |
| Msa0944700 | Msa1440880 | 0.804974 | 1.669338e-49 | -8.615850e-47 |
| Msa0944700 | Msa1440960 | 0.808134 | 3.595975e-50 | -8.615850e-47 |
| Msa0944700 | Msa1451160 | 0.802863 | 4.584346e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944700 | MtrunA17_Chr6g0461561 | 96.007 | 601 | 19 | 2 | 1 | 596 | 1 | 601 | 0.0 | 1186 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944700 | AT1G54385.2 | 52.104 | 618 | 216 | 20 | 1 | 596 | 1 | 560 | 0.0 | 532 |
| Msa0944700 | AT1G54385.1 | 52.104 | 618 | 216 | 20 | 1 | 596 | 1 | 560 | 0.0 | 532 |
| Msa0944700 | AT1G54385.3 | 52.104 | 618 | 216 | 20 | 1 | 596 | 1 | 560 | 0.0 | 532 |
| Msa0944700 | AT3G03970.1 | 58.108 | 296 | 119 | 3 | 1 | 294 | 1 | 293 | 1.07e-110 | 343 |
| Msa0944700 | AT3G03970.4 | 58.108 | 296 | 119 | 3 | 1 | 294 | 1 | 293 | 1.07e-110 | 343 |
| Msa0944700 | AT3G03970.2 | 58.108 | 296 | 119 | 3 | 1 | 294 | 1 | 293 | 1.07e-110 | 343 |
| Msa0944700 | AT3G03970.6 | 58.108 | 296 | 119 | 3 | 1 | 294 | 1 | 293 | 1.07e-110 | 343 |
| Msa0944700 | AT3G03970.3 | 58.108 | 296 | 119 | 3 | 1 | 294 | 1 | 293 | 1.07e-110 | 343 |
| Msa0944700 | AT3G03970.5 | 58.108 | 296 | 119 | 3 | 1 | 294 | 1 | 293 | 1.07e-110 | 343 |
Find 140 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTGTTGATTCGGATAAT+TGG | 0.194402 | 6_3:-21665133 | Msa0944700:CDS |
| CAATGGCCACACCTTTAATT+TGG | 0.198465 | 6_3:-21663578 | Msa0944700:CDS |
| AAAATCTCTTCCACTAAAAT+TGG | 0.218674 | 6_3:+21664674 | None:intergenic |
| AGGACTTGTGTTGGTACTTT+TGG | 0.218910 | 6_3:+21664323 | None:intergenic |
| TTTGTCATTCGCAACTTTCT+TGG | 0.220506 | 6_3:+21664737 | None:intergenic |
| CTTCTGATGAAATGGTTAAT+AGG | 0.231433 | 6_3:-21665103 | Msa0944700:CDS |
| TGACTGTTGAGCCAAATTAA+AGG | 0.253297 | 6_3:+21663567 | None:intergenic |
| TATTCCATGTCTAGGACTTC+TGG | 0.253597 | 6_3:+21664347 | None:intergenic |
| CTCGAATACTTCCCTGGATA+TGG | 0.257300 | 6_3:-21664582 | Msa0944700:CDS |
| TCTTGTTGTGTTGATTCTTA+TGG | 0.267290 | 6_3:-21665668 | Msa0944700:five_prime_UTR |
| AAAATATGGTGAATGGATTT+AGG | 0.274046 | 6_3:-21663306 | Msa0944700:three_prime_UTR |
| TGTTCAGCTAAATTTAAAAT+AGG | 0.287196 | 6_3:-21663331 | Msa0944700:three_prime_UTR |
| TTTGAAAAGATTTGAACTTT+AGG | 0.287832 | 6_3:-21665750 | Msa0944700:five_prime_UTR |
| TTCTGATGAAATGGTTAATA+GGG | 0.294905 | 6_3:-21665102 | Msa0944700:CDS |
| AGAGAGCGAATGAGCCTCTT+TGG | 0.302508 | 6_3:+21663957 | None:intergenic |
| AAAATCTTATGTGAAAGATT+TGG | 0.307204 | 6_3:-21665519 | Msa0944700:CDS |
| GAAGTTCTTGCTAGGGTTCA+TGG | 0.313252 | 6_3:-21665407 | Msa0944700:CDS |
| AAGCTTTGGAGCCTTGAAAA+TGG | 0.313399 | 6_3:-21664483 | Msa0944700:CDS |
| TGACTCGCTCACGAGTTCTT+TGG | 0.313902 | 6_3:-21665192 | Msa0944700:CDS |
| CGAAGCTAAAGTCTGAATTA+TGG | 0.319489 | 6_3:+21665346 | None:intergenic |
| TGGTGCAGCTCTTTGCTTGA+AGG | 0.321042 | 6_3:-21665156 | Msa0944700:CDS |
| ATGGATGGAGATAGTTCTTC+AGG | 0.327702 | 6_3:-21664651 | Msa0944700:CDS |
| GACTAATTTGCATATGGGTT+TGG | 0.331345 | 6_3:-21665036 | Msa0944700:CDS |
| GAACATCTTCAGAAGGCTTC+TGG | 0.347437 | 6_3:+21663697 | None:intergenic |
| TACTCAGACTAATTTGCATA+TGG | 0.347854 | 6_3:-21665042 | Msa0944700:CDS |
| ATAGACTGACATGTTGAAAT+AGG | 0.349826 | 6_3:+21664543 | None:intergenic |
| GCAGTGCCAGTCCGATAAAA+TGG | 0.359720 | 6_3:-21664799 | Msa0944700:CDS |
| TTCTTATCCTCCGGCATCGT+TGG | 0.368225 | 6_3:+21665251 | None:intergenic |
| CTAACGCCACAGCAACATTC+TGG | 0.372076 | 6_3:+21665075 | None:intergenic |
| CTTGAAGGCTCTTGTTGATT+CGG | 0.374085 | 6_3:-21665141 | Msa0944700:CDS |
| TATCATCGGGCAACATTGAC+TGG | 0.382533 | 6_3:-21663872 | Msa0944700:CDS |
| GTTCCAGCTGTCGCTAGATA+TGG | 0.391848 | 6_3:-21665281 | Msa0944700:CDS |
| TAAACTTCCCAACATTTAGT+TGG | 0.395299 | 6_3:+21663477 | None:intergenic |
| AAGAGTCCTGCTTCGGTGAC+TGG | 0.398075 | 6_3:-21664699 | Msa0944700:CDS |
| AAGGAAACCGGTACTGTGTC+TGG | 0.401751 | 6_3:-21665452 | Msa0944700:CDS |
| ATTCCATGTCTAGGACTTCT+GGG | 0.407692 | 6_3:+21664348 | None:intergenic |
| AAATGTCAGTGGAGAGTCTA+TGG | 0.416004 | 6_3:-21664934 | Msa0944700:CDS |
| TTGAAATAGGAGACTCAGCC+AGG | 0.416735 | 6_3:+21664556 | None:intergenic |
| AAATAGCTGAAGAATGGAAC+AGG | 0.417499 | 6_3:-21665724 | Msa0944700:five_prime_UTR |
| GTTAATTCCAACTAAATGTT+GGG | 0.421988 | 6_3:-21663484 | Msa0944700:three_prime_UTR |
| GATAAAATGGCGTTCATCAA+AGG | 0.434224 | 6_3:-21664786 | Msa0944700:CDS |
| TCAGCCAGGGATCCATATCC+AGG | 0.434902 | 6_3:+21664570 | None:intergenic |
| AATGTTGCTGTGGCGTTAGA+AGG | 0.439725 | 6_3:-21665071 | Msa0944700:CDS |
| GGTTAATTCCAACTAAATGT+TGG | 0.440560 | 6_3:-21663485 | Msa0944700:three_prime_UTR |
| ATATGTTTCTTCTTATCCTC+CGG | 0.443407 | 6_3:+21665242 | None:intergenic |
| GGAGTGTCAATAGGAAGCTT+TGG | 0.450486 | 6_3:-21664497 | Msa0944700:CDS |
| GCGGTTTGCTTCTGATGAAA+TGG | 0.451524 | 6_3:-21665111 | Msa0944700:CDS |
| CGCTGTATGAAGTTCTTGCT+AGG | 0.452007 | 6_3:-21665415 | Msa0944700:CDS |
| CTCTTCAACAAGCTTGTTCG+AGG | 0.456204 | 6_3:-21665307 | Msa0944700:CDS |
| CAGACTTTAGCTTCGAGTGC+AGG | 0.465154 | 6_3:-21665338 | Msa0944700:CDS |
| GACTGAATTCTACCTTATGT+TGG | 0.475102 | 6_3:-21663374 | Msa0944700:three_prime_UTR |
| GCTCGACTGCTCATACAATC+CGG | 0.478888 | 6_3:-21664969 | Msa0944700:CDS |
| ATCTTTCGTCATTCTTGCAA+TGG | 0.478922 | 6_3:-21663595 | Msa0944700:CDS |
| TGCATGATACTGTCAATCAT+TGG | 0.479754 | 6_3:+21665371 | None:intergenic |
| ATTCATCTAATTCCAACATA+AGG | 0.480009 | 6_3:+21663362 | None:intergenic |
| TGCTCAAGTTTCTGAGACCA+AGG | 0.480477 | 6_3:-21665471 | Msa0944700:CDS |
| ACCAAGCGCAGATTTGTTTG+CGG | 0.482675 | 6_3:-21663621 | Msa0944700:CDS |
| AGACACAGTACCGGTTTCCT+TGG | 0.485208 | 6_3:+21665454 | None:intergenic |
| ATCCATACCATTTCTCTCCT+CGG | 0.485625 | 6_3:+21664419 | None:intergenic |
| ACTCAGACTAATTTGCATAT+GGG | 0.487815 | 6_3:-21665041 | Msa0944700:CDS |
| GAAACTTGAGCAAGAAACAT+AGG | 0.490263 | 6_3:+21665482 | None:intergenic |
| AGACTCTTGTACCTTCGAAT+CGG | 0.491353 | 6_3:+21663894 | None:intergenic |
| GAAGTTTAGTGTAGAAGTAG+AGG | 0.497013 | 6_3:-21663462 | Msa0944700:three_prime_UTR |
| ATTCCATATCTAGCGACAGC+TGG | 0.500350 | 6_3:+21665278 | None:intergenic |
| CGTACTCTCGAATACTTCCC+TGG | 0.501179 | 6_3:-21664588 | Msa0944700:CDS |
| TTGTTGATTCGGATAATTGG+CGG | 0.501457 | 6_3:-21665130 | Msa0944700:CDS |
| AGGTGAAAATAGCTGAAGAA+TGG | 0.502248 | 6_3:-21665730 | Msa0944700:five_prime_UTR |
| ATAATTTGAACTATTCATGT+AGG | 0.504708 | 6_3:-21664518 | Msa0944700:CDS |
| GTGGATCTAAACACTTCATC+AGG | 0.509692 | 6_3:+21664865 | None:intergenic |
| GTTTCTGAGACCAAGGAAAC+CGG | 0.510693 | 6_3:-21665464 | Msa0944700:CDS |
| ATTCATGTAGGAGTGTCAAT+AGG | 0.512298 | 6_3:-21664506 | Msa0944700:CDS |
| GACATTTAACATGCGCAGCC+CGG | 0.516067 | 6_3:+21664950 | None:intergenic |
| TTGGAACCAGTCACCGAAGC+AGG | 0.517104 | 6_3:+21664693 | None:intergenic |
| AACGATCAAAGAGTTATGCT+TGG | 0.519887 | 6_3:+21665001 | None:intergenic |
| TCAAGTGCCGAGGAGAGAAA+TGG | 0.521681 | 6_3:-21664426 | Msa0944700:CDS |
| CAATCAGAACTCTCATCGGT+TGG | 0.521715 | 6_3:+21663927 | None:intergenic |
| GCTGTATGAAGTTCTTGCTA+GGG | 0.522921 | 6_3:-21665414 | Msa0944700:CDS |
| TACGGAAGCTCATGCGGGGA+TGG | 0.524812 | 6_3:-21663780 | Msa0944700:CDS |
| CTTCCCTGGATATGGATCCC+TGG | 0.525024 | 6_3:-21664574 | Msa0944700:CDS |
| AACTCTATTCATAATTATGT+AGG | 0.525068 | 6_3:+21663522 | None:intergenic |
| AGGCATGAAGAGTCCTGCTT+CGG | 0.525449 | 6_3:-21664706 | Msa0944700:CDS |
| TGAACAAGTAATTGAGGAGA+TGG | 0.526873 | 6_3:-21664823 | Msa0944700:CDS |
| CTCGACTGCTCATACAATCC+GGG | 0.528172 | 6_3:-21664968 | Msa0944700:CDS |
| TCCGCAAACAAATCTGCGCT+TGG | 0.528581 | 6_3:+21663620 | None:intergenic |
| ATGGATCACACGTTTCTGAA+TGG | 0.532430 | 6_3:-21664402 | Msa0944700:CDS |
| TATTCGAGAGTACGTGACTC+TGG | 0.535424 | 6_3:+21664597 | None:intergenic |
| TGCCGAGGAGAGAAATGGTA+TGG | 0.538874 | 6_3:-21664421 | Msa0944700:CDS |
| AAGAGTACGGAAGCTCATGC+GGG | 0.539385 | 6_3:-21663785 | Msa0944700:CDS |
| GGAGATAGTTCTTCAGGTGA+TGG | 0.540688 | 6_3:-21664645 | Msa0944700:CDS |
| TGGAATTGATCCAACGATGC+CGG | 0.540945 | 6_3:-21665261 | Msa0944700:CDS |
| TGCGGGGATGGACAGTATCA+AGG | 0.541679 | 6_3:-21663768 | Msa0944700:CDS |
| GTGAATCAGATGTGGGAGTA+CGG | 0.541970 | 6_3:+21664619 | None:intergenic |
| TGTTGTGTTGATTCTTATGG+TGG | 0.542214 | 6_3:-21665665 | Msa0944700:five_prime_UTR |
| GCAAATCACGACAAGTATGA+TGG | 0.543100 | 6_3:-21663810 | Msa0944700:CDS |
| CTTTCACGAACATCTTCAGA+AGG | 0.548806 | 6_3:+21663690 | None:intergenic |
| AAGTATGATGGCAAAGAGTA+CGG | 0.552367 | 6_3:-21663798 | Msa0944700:CDS |
| TTTGGAGCCTTGAAAATGGA+GGG | 0.552771 | 6_3:-21664479 | Msa0944700:CDS |
| CTCGAACAAGCTTGTTGAAG+AGG | 0.558983 | 6_3:+21665308 | None:intergenic |
| GCTGTAGTTCAACAATGGGA+AGG | 0.560642 | 6_3:-21665622 | Msa0944700:exon |
| CGTGATTTGCTAAACCACTC+TGG | 0.561161 | 6_3:+21663823 | None:intergenic |
| TCTTTGGATAGTTTGAGTTG+TGG | 0.564961 | 6_3:-21665176 | Msa0944700:CDS |
| AAGGTACAAGAGTCTATCAT+CGG | 0.569026 | 6_3:-21663886 | Msa0944700:CDS |
| CTTTGGAGCCTTGAAAATGG+AGG | 0.580803 | 6_3:-21664480 | Msa0944700:CDS |
| TCGAACAAGCTTGTTGAAGA+GGG | 0.583523 | 6_3:+21665309 | None:intergenic |
| AGGTACAAGAGTCTATCATC+GGG | 0.590068 | 6_3:-21663885 | Msa0944700:CDS |
| AAAGAGTACGGAAGCTCATG+CGG | 0.590303 | 6_3:-21663786 | Msa0944700:CDS |
| TCAAGCTCTCTTCGTAACAC+AGG | 0.592102 | 6_3:+21665590 | None:intergenic |
| TGATGAAGTGTTTAGATCCA+CGG | 0.595367 | 6_3:-21664863 | Msa0944700:CDS |
| TCATATTTAGAATAAGCTGA+TGG | 0.595918 | 6_3:+21663846 | None:intergenic |
| CTCGTGAGCGAGTCAGATAG+AGG | 0.596905 | 6_3:+21665200 | None:intergenic |
| AGAACAATCAGAACTCTCAT+CGG | 0.600220 | 6_3:+21663923 | None:intergenic |
| GAATTCTCCAGACACAGTAC+CGG | 0.604514 | 6_3:+21665445 | None:intergenic |
| AGGGGTTGATGTGTCTCTCA+AGG | 0.604823 | 6_3:-21664460 | Msa0944700:CDS |
| GTCAGTGGAGAGTCTATGGA+TGG | 0.608577 | 6_3:-21664930 | Msa0944700:CDS |
| GTTGATGTGTCTCTCAAGGA+CGG | 0.617613 | 6_3:-21664456 | Msa0944700:CDS |
| ACTTACAACAGGACTTGTGT+TGG | 0.617904 | 6_3:+21664314 | None:intergenic |
| GACTCTGGTGAATCAGATGT+GGG | 0.622726 | 6_3:+21664612 | None:intergenic |
| TCTTCAACAAGCTTGTTCGA+GGG | 0.630695 | 6_3:-21665306 | Msa0944700:CDS |
| ATCAGCATCAGCAATGTCGT+CGG | 0.632943 | 6_3:+21663722 | None:intergenic |
| GGAGGTTGAACAAGTAATTG+AGG | 0.633070 | 6_3:-21664829 | Msa0944700:CDS |
| TTCATAATTATGTAGGAACA+AGG | 0.637074 | 6_3:+21663529 | None:intergenic |
| CGGTCTGTTCTCAAGTGCCG+AGG | 0.639180 | 6_3:-21664436 | Msa0944700:CDS |
| TTGGAGCCTTGAAAATGGAG+GGG | 0.639404 | 6_3:-21664478 | Msa0944700:CDS |
| ATCCCCAGAAGTCCTAGACA+TGG | 0.640903 | 6_3:-21664351 | Msa0944700:CDS |
| GTTGAGCCAAATTAAAGGTG+TGG | 0.646088 | 6_3:+21663572 | None:intergenic |
| CAGCCAGGGATCCATATCCA+GGG | 0.652030 | 6_3:+21664571 | None:intergenic |
| TTCCATGTCTAGGACTTCTG+GGG | 0.653399 | 6_3:+21664349 | None:intergenic |
| TGACTCTGGTGAATCAGATG+TGG | 0.654691 | 6_3:+21664611 | None:intergenic |
| TATTCTAAATATGACCAGAG+TGG | 0.667454 | 6_3:-21663837 | Msa0944700:CDS |
| TGGATGGTAATTCTCAGAAG+CGG | 0.678871 | 6_3:-21664914 | Msa0944700:CDS |
| AGAGTACGGAAGCTCATGCG+GGG | 0.680199 | 6_3:-21663784 | Msa0944700:CDS |
| AATTGATCCAACGATGCCGG+AGG | 0.688811 | 6_3:-21665258 | Msa0944700:CDS |
| GATCACACGTTTCTGAATGG+CGG | 0.693143 | 6_3:-21664399 | Msa0944700:CDS |
| GGTTTGCCAGAATGTTGCTG+TGG | 0.695386 | 6_3:-21665081 | Msa0944700:CDS |
| AATAGCTGAAGAATGGAACA+GGG | 0.696637 | 6_3:-21665723 | Msa0944700:five_prime_UTR |
| TGAAATAGGAGACTCAGCCA+GGG | 0.704992 | 6_3:+21664557 | None:intergenic |
| ACCTCCGAGAAAATACTCCG+TGG | 0.716880 | 6_3:+21664846 | None:intergenic |
| TGAAAATCTTGACAAAGACG+CGG | 0.732729 | 6_3:-21665570 | Msa0944700:CDS |
| GAATGGCGGAGATTTAACTG+AGG | 0.756668 | 6_3:-21664385 | Msa0944700:CDS |
| GGGGATGGACAGTATCAAGG+AGG | 0.768697 | 6_3:-21663765 | Msa0944700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTATTTCATGAATTAA+TGG | + | chr6_3:21664952-21664971 | None:intergenic | 10.0% |
| !!! | ATTTAAAATAGGTAAAAATA+TGG | - | chr6_3:21665764-21665783 | Msa0944700:five_prime_UTR | 10.0% |
| !! | TTTGAAAAGATTTGAACTTT+AGG | - | chr6_3:21663334-21663353 | Msa0944700:three_prime_UTR | 20.0% |
| !! | AAAATCTTATGTGAAAGATT+TGG | - | chr6_3:21663565-21663584 | Msa0944700:CDS | 20.0% |
| !! | ATAATTTGAACTATTCATGT+AGG | - | chr6_3:21664566-21664585 | Msa0944700:CDS | 20.0% |
| !! | AAATCAAATAATGTCGAATA+GGG | + | chr6_3:21664813-21664832 | None:intergenic | 20.0% |
| !! | TAAATCAAATAATGTCGAAT+AGG | + | chr6_3:21664814-21664833 | None:intergenic | 20.0% |
| !! | TCAAGTTTCAATAAACAAAA+AGG | + | chr6_3:21665034-21665053 | None:intergenic | 20.0% |
| !! | AACTCTATTCATAATTATGT+AGG | + | chr6_3:21665565-21665584 | None:intergenic | 20.0% |
| !!! | TGTTCAGCTAAATTTAAAAT+AGG | - | chr6_3:21665753-21665772 | Msa0944700:five_prime_UTR | 20.0% |
| !! | ATGTGAAAGATTTGGATTTT+AGG | - | chr6_3:21663573-21663592 | Msa0944700:CDS | 25.0% |
| !! | TGTGAAAGATTTGGATTTTA+GGG | - | chr6_3:21663574-21663593 | Msa0944700:CDS | 25.0% |
| ! | TTCTGATGAAATGGTTAATA+GGG | - | chr6_3:21663982-21664001 | Msa0944700:CDS | 25.0% |
| ! | AAAATCTCTTCCACTAAAAT+TGG | + | chr6_3:21664413-21664432 | None:intergenic | 25.0% |
| !! | TTTTAGTGGAAGAGATTTTA+TGG | - | chr6_3:21664414-21664433 | Msa0944700:CDS | 25.0% |
| !! | GTTAGTGTTTCTTTTTGTTA+TGG | - | chr6_3:21664983-21665002 | Msa0944700:CDS | 25.0% |
| !! | TCATATTTAGAATAAGCTGA+TGG | + | chr6_3:21665241-21665260 | None:intergenic | 25.0% |
| ! | TTCATAATTATGTAGGAACA+AGG | + | chr6_3:21665558-21665577 | None:intergenic | 25.0% |
| !!! | TAGAGTTTTATGAAAGTAGT+TGG | - | chr6_3:21665578-21665597 | Msa0944700:CDS | 25.0% |
| ! | GTTAATTCCAACTAAATGTT+GGG | - | chr6_3:21665600-21665619 | Msa0944700:CDS | 25.0% |
| !! | GAAAAATAAAAGCACATTGA+AGG | + | chr6_3:21665665-21665684 | None:intergenic | 25.0% |
| ! | ATTCATCTAATTCCAACATA+AGG | + | chr6_3:21665725-21665744 | None:intergenic | 25.0% |
| ! | ATAGGTAAAAATATGGTGAA+TGG | - | chr6_3:21665771-21665790 | Msa0944700:five_prime_UTR | 25.0% |
| !! | AAAATATGGTGAATGGATTT+AGG | - | chr6_3:21665778-21665797 | Msa0944700:five_prime_UTR | 25.0% |
| !! | TCTTGTTGTGTTGATTCTTA+TGG | - | chr6_3:21663416-21663435 | Msa0944700:three_prime_UTR | 30.0% |
| !! | TTTTTGCTGTAGTTCAACAA+TGG | - | chr6_3:21663457-21663476 | Msa0944700:three_prime_UTR | 30.0% |
| !! | TTTTGCTGTAGTTCAACAAT+GGG | - | chr6_3:21663458-21663477 | Msa0944700:three_prime_UTR | 30.0% |
| ATATGTTTCTTCTTATCCTC+CGG | + | chr6_3:21663845-21663864 | None:intergenic | 30.0% | |
| CTTCTGATGAAATGGTTAAT+AGG | - | chr6_3:21663981-21664000 | Msa0944700:CDS | 30.0% | |
| ! | TACTCAGACTAATTTGCATA+TGG | - | chr6_3:21664042-21664061 | Msa0944700:intron | 30.0% |
| ! | ACTCAGACTAATTTGCATAT+GGG | - | chr6_3:21664043-21664062 | Msa0944700:intron | 30.0% |
| !! | TTTGATGAACGCCATTTTAT+CGG | + | chr6_3:21664299-21664318 | None:intergenic | 30.0% |
| ATAGACTGACATGTTGAAAT+AGG | + | chr6_3:21664544-21664563 | None:intergenic | 30.0% | |
| ! | ATATTTGAGACACTTACAAC+AGG | + | chr6_3:21664784-21664803 | None:intergenic | 30.0% |
| TATTCTAAATATGACCAGAG+TGG | - | chr6_3:21665247-21665266 | Msa0944700:CDS | 30.0% | |
| GGTTAATTCCAACTAAATGT+TGG | - | chr6_3:21665599-21665618 | Msa0944700:CDS | 30.0% | |
| TAAACTTCCCAACATTTAGT+TGG | + | chr6_3:21665610-21665629 | None:intergenic | 30.0% | |
| AGGTGAAAATAGCTGAAGAA+TGG | - | chr6_3:21663354-21663373 | Msa0944700:three_prime_UTR | 35.0% | |
| AAATAGCTGAAGAATGGAAC+AGG | - | chr6_3:21663360-21663379 | Msa0944700:three_prime_UTR | 35.0% | |
| AATAGCTGAAGAATGGAACA+GGG | - | chr6_3:21663361-21663380 | Msa0944700:three_prime_UTR | 35.0% | |
| !! | TGTTGTGTTGATTCTTATGG+TGG | - | chr6_3:21663419-21663438 | Msa0944700:three_prime_UTR | 35.0% |
| TGAAAATCTTGACAAAGACG+CGG | - | chr6_3:21663514-21663533 | Msa0944700:three_prime_UTR | 35.0% | |
| GAAACTTGAGCAAGAAACAT+AGG | + | chr6_3:21663605-21663624 | None:intergenic | 35.0% | |
| TGCATGATACTGTCAATCAT+TGG | + | chr6_3:21663716-21663735 | None:intergenic | 35.0% | |
| CGAAGCTAAAGTCTGAATTA+TGG | + | chr6_3:21663741-21663760 | None:intergenic | 35.0% | |
| !! | TCTTTGGATAGTTTGAGTTG+TGG | - | chr6_3:21663908-21663927 | Msa0944700:CDS | 35.0% |
| !! | CTCTTGTTGATTCGGATAAT+TGG | - | chr6_3:21663951-21663970 | Msa0944700:CDS | 35.0% |
| !! | TTGTTGATTCGGATAATTGG+CGG | - | chr6_3:21663954-21663973 | Msa0944700:CDS | 35.0% |
| ! | GACTAATTTGCATATGGGTT+TGG | - | chr6_3:21664048-21664067 | Msa0944700:intron | 35.0% |
| AACGATCAAAGAGTTATGCT+TGG | + | chr6_3:21664086-21664105 | None:intergenic | 35.0% | |
| ! | TGATGAAGTGTTTAGATCCA+CGG | - | chr6_3:21664221-21664240 | Msa0944700:intron | 35.0% |
| TGAACAAGTAATTGAGGAGA+TGG | - | chr6_3:21664261-21664280 | Msa0944700:intron | 35.0% | |
| GATAAAATGGCGTTCATCAA+AGG | - | chr6_3:21664298-21664317 | Msa0944700:intron | 35.0% | |
| TTTGTCATTCGCAACTTTCT+TGG | + | chr6_3:21664350-21664369 | None:intergenic | 35.0% | |
| GCGAATGACAAAAAATTGAG+AGG | - | chr6_3:21664358-21664377 | Msa0944700:CDS | 35.0% | |
| ! | AGTGGAAGAGATTTTATGGA+TGG | - | chr6_3:21664418-21664437 | Msa0944700:CDS | 35.0% |
| !! | ATTCATGTAGGAGTGTCAAT+AGG | - | chr6_3:21664578-21664597 | Msa0944700:CDS | 35.0% |
| ! | CTTTTGGATATTCCATGTCT+AGG | + | chr6_3:21664748-21664767 | None:intergenic | 35.0% |
| GTGATCTCTGATAACATGAA+AGG | + | chr6_3:21665078-21665097 | None:intergenic | 35.0% | |
| ! | AGATTTTTGACACTCCAAAG+AGG | - | chr6_3:21665113-21665132 | Msa0944700:CDS | 35.0% |
| AGAACAATCAGAACTCTCAT+CGG | + | chr6_3:21665164-21665183 | None:intergenic | 35.0% | |
| AAGGTACAAGAGTCTATCAT+CGG | - | chr6_3:21665198-21665217 | Msa0944700:CDS | 35.0% | |
| AAGTATGATGGCAAAGAGTA+CGG | - | chr6_3:21665286-21665305 | Msa0944700:CDS | 35.0% | |
| ATCTTTCGTCATTCTTGCAA+TGG | - | chr6_3:21665489-21665508 | Msa0944700:CDS | 35.0% | |
| TGACTGTTGAGCCAAATTAA+AGG | + | chr6_3:21665520-21665539 | None:intergenic | 35.0% | |
| GAAGTTTAGTGTAGAAGTAG+AGG | - | chr6_3:21665622-21665641 | Msa0944700:exon | 35.0% | |
| GACTGAATTCTACCTTATGT+TGG | - | chr6_3:21665710-21665729 | Msa0944700:five_prime_UTR | 35.0% | |
| GCTGTATGAAGTTCTTGCTA+GGG | - | chr6_3:21663670-21663689 | Msa0944700:CDS | 40.0% | |
| !! | TCGAACAAGCTTGTTGAAGA+GGG | + | chr6_3:21663778-21663797 | None:intergenic | 40.0% |
| ! | TCTTCAACAAGCTTGTTCGA+GGG | - | chr6_3:21663778-21663797 | Msa0944700:CDS | 40.0% |
| ! | CTTGAAGGCTCTTGTTGATT+CGG | - | chr6_3:21663943-21663962 | Msa0944700:CDS | 40.0% |
| AAATGTCAGTGGAGAGTCTA+TGG | - | chr6_3:21664150-21664169 | Msa0944700:intron | 40.0% | |
| TGGATGGTAATTCTCAGAAG+CGG | - | chr6_3:21664170-21664189 | Msa0944700:intron | 40.0% | |
| GTGGATCTAAACACTTCATC+AGG | + | chr6_3:21664222-21664241 | None:intergenic | 40.0% | |
| !! | AGATCCACGGAGTATTTTCT+CGG | - | chr6_3:21664234-21664253 | Msa0944700:intron | 40.0% |
| GGAGGTTGAACAAGTAATTG+AGG | - | chr6_3:21664255-21664274 | Msa0944700:intron | 40.0% | |
| !! | GTGACTGGTTCCAATTTTAG+TGG | - | chr6_3:21664400-21664419 | Msa0944700:CDS | 40.0% |
| ATGGATGGAGATAGTTCTTC+AGG | - | chr6_3:21664433-21664452 | Msa0944700:CDS | 40.0% | |
| !! | AAGCTTTGGAGCCTTGAAAA+TGG | - | chr6_3:21664601-21664620 | Msa0944700:CDS | 40.0% |
| ! | TTTGGAGCCTTGAAAATGGA+GGG | - | chr6_3:21664605-21664624 | Msa0944700:CDS | 40.0% |
| ATCCATACCATTTCTCTCCT+CGG | + | chr6_3:21664668-21664687 | None:intergenic | 40.0% | |
| ATGGATCACACGTTTCTGAA+TGG | - | chr6_3:21664682-21664701 | Msa0944700:CDS | 40.0% | |
| ! | ATTCCATGTCTAGGACTTCT+GGG | + | chr6_3:21664739-21664758 | None:intergenic | 40.0% |
| ! | TATTCCATGTCTAGGACTTC+TGG | + | chr6_3:21664740-21664759 | None:intergenic | 40.0% |
| !! | AGGACTTGTGTTGGTACTTT+TGG | + | chr6_3:21664764-21664783 | None:intergenic | 40.0% |
| ACTTACAACAGGACTTGTGT+TGG | + | chr6_3:21664773-21664792 | None:intergenic | 40.0% | |
| !! | GTTCTGAAAAACCGATTCGA+AGG | - | chr6_3:21665179-21665198 | Msa0944700:CDS | 40.0% |
| AGACTCTTGTACCTTCGAAT+CGG | + | chr6_3:21665193-21665212 | None:intergenic | 40.0% | |
| AGGTACAAGAGTCTATCATC+GGG | - | chr6_3:21665199-21665218 | Msa0944700:CDS | 40.0% | |
| GCAAATCACGACAAGTATGA+TGG | - | chr6_3:21665274-21665293 | Msa0944700:CDS | 40.0% | |
| CTTTCACGAACATCTTCAGA+AGG | + | chr6_3:21665397-21665416 | None:intergenic | 40.0% | |
| !!! | GGTCTTTTGAAGTGGCTTTT+CGG | + | chr6_3:21665446-21665465 | None:intergenic | 40.0% |
| CAATGGCCACACCTTTAATT+TGG | - | chr6_3:21665506-21665525 | Msa0944700:CDS | 40.0% | |
| GTTGAGCCAAATTAAAGGTG+TGG | + | chr6_3:21665515-21665534 | None:intergenic | 40.0% | |
| GCTGTAGTTCAACAATGGGA+AGG | - | chr6_3:21663462-21663481 | Msa0944700:three_prime_UTR | 45.0% | |
| TCAAGCTCTCTTCGTAACAC+AGG | + | chr6_3:21663497-21663516 | None:intergenic | 45.0% | |
| !! | TGCTCAAGTTTCTGAGACCA+AGG | - | chr6_3:21663613-21663632 | Msa0944700:CDS | 45.0% |
| !! | GTTTCTGAGACCAAGGAAAC+CGG | - | chr6_3:21663620-21663639 | Msa0944700:CDS | 45.0% |
| GAATTCTCCAGACACAGTAC+CGG | + | chr6_3:21663642-21663661 | None:intergenic | 45.0% | |
| CGCTGTATGAAGTTCTTGCT+AGG | - | chr6_3:21663669-21663688 | Msa0944700:CDS | 45.0% | |
| GAAGTTCTTGCTAGGGTTCA+TGG | - | chr6_3:21663677-21663696 | Msa0944700:CDS | 45.0% | |
| !! | CTCGAACAAGCTTGTTGAAG+AGG | + | chr6_3:21663779-21663798 | None:intergenic | 45.0% |
| ! | CTCTTCAACAAGCTTGTTCG+AGG | - | chr6_3:21663777-21663796 | Msa0944700:CDS | 45.0% |
| ATTCCATATCTAGCGACAGC+TGG | + | chr6_3:21663809-21663828 | None:intergenic | 45.0% | |
| TGGAATTGATCCAACGATGC+CGG | - | chr6_3:21663823-21663842 | Msa0944700:CDS | 45.0% | |
| ! | GCGGTTTGCTTCTGATGAAA+TGG | - | chr6_3:21663973-21663992 | Msa0944700:CDS | 45.0% |
| AATGTTGCTGTGGCGTTAGA+AGG | - | chr6_3:21664013-21664032 | Msa0944700:intron | 45.0% | |
| CTGCGCATGTTAAATGTCAG+TGG | - | chr6_3:21664139-21664158 | Msa0944700:intron | 45.0% | |
| !! | TGAACGCCATTTTATCGGAC+TGG | + | chr6_3:21664294-21664313 | None:intergenic | 45.0% |
| GGAGATAGTTCTTCAGGTGA+TGG | - | chr6_3:21664439-21664458 | Msa0944700:CDS | 45.0% | |
| GTGAATCAGATGTGGGAGTA+CGG | + | chr6_3:21664468-21664487 | None:intergenic | 45.0% | |
| GACTCTGGTGAATCAGATGT+GGG | + | chr6_3:21664475-21664494 | None:intergenic | 45.0% | |
| TGACTCTGGTGAATCAGATG+TGG | + | chr6_3:21664476-21664495 | None:intergenic | 45.0% | |
| ! | TATTCGAGAGTACGTGACTC+TGG | + | chr6_3:21664490-21664509 | None:intergenic | 45.0% |
| CTCGAATACTTCCCTGGATA+TGG | - | chr6_3:21664502-21664521 | Msa0944700:CDS | 45.0% | |
| TGAAATAGGAGACTCAGCCA+GGG | + | chr6_3:21664530-21664549 | None:intergenic | 45.0% | |
| TTGAAATAGGAGACTCAGCC+AGG | + | chr6_3:21664531-21664550 | None:intergenic | 45.0% | |
| ! | GGAGTGTCAATAGGAAGCTT+TGG | - | chr6_3:21664587-21664606 | Msa0944700:CDS | 45.0% |
| !! | CTTTGGAGCCTTGAAAATGG+AGG | - | chr6_3:21664604-21664623 | Msa0944700:CDS | 45.0% |
| TTGGAGCCTTGAAAATGGAG+GGG | - | chr6_3:21664606-21664625 | Msa0944700:CDS | 45.0% | |
| ! | CATCAACCCCTCCATTTTCA+AGG | + | chr6_3:21664615-21664634 | None:intergenic | 45.0% |
| GTTGATGTGTCTCTCAAGGA+CGG | - | chr6_3:21664628-21664647 | Msa0944700:CDS | 45.0% | |
| GATCACACGTTTCTGAATGG+CGG | - | chr6_3:21664685-21664704 | Msa0944700:CDS | 45.0% | |
| ! | GAATGGCGGAGATTTAACTG+AGG | - | chr6_3:21664699-21664718 | Msa0944700:CDS | 45.0% |
| ! | TTCCATGTCTAGGACTTCTG+GGG | + | chr6_3:21664738-21664757 | None:intergenic | 45.0% |
| CAATCAGAACTCTCATCGGT+TGG | + | chr6_3:21665160-21665179 | None:intergenic | 45.0% | |
| TATCATCGGGCAACATTGAC+TGG | - | chr6_3:21665212-21665231 | Msa0944700:CDS | 45.0% | |
| !! | CGTGATTTGCTAAACCACTC+TGG | + | chr6_3:21665264-21665283 | None:intergenic | 45.0% |
| ! | AAAGAGTACGGAAGCTCATG+CGG | - | chr6_3:21665298-21665317 | Msa0944700:CDS | 45.0% |
| ATCAGCATCAGCAATGTCGT+CGG | + | chr6_3:21665365-21665384 | None:intergenic | 45.0% | |
| GAACATCTTCAGAAGGCTTC+TGG | + | chr6_3:21665390-21665409 | None:intergenic | 45.0% | |
| ! | TTTTCGGCGCGAACAATTTG+TGG | + | chr6_3:21665430-21665449 | None:intergenic | 45.0% |
| ! | ACCAAGCGCAGATTTGTTTG+CGG | - | chr6_3:21665463-21665482 | Msa0944700:CDS | 45.0% |
| !! | AGACACAGTACCGGTTTCCT+TGG | + | chr6_3:21663633-21663652 | None:intergenic | 50.0% |
| AAGGAAACCGGTACTGTGTC+TGG | - | chr6_3:21663632-21663651 | Msa0944700:CDS | 50.0% | |
| ! | CAGACTTTAGCTTCGAGTGC+AGG | - | chr6_3:21663746-21663765 | Msa0944700:CDS | 50.0% |
| GTTCCAGCTGTCGCTAGATA+TGG | - | chr6_3:21663803-21663822 | Msa0944700:CDS | 50.0% | |
| AATTGATCCAACGATGCCGG+AGG | - | chr6_3:21663826-21663845 | Msa0944700:CDS | 50.0% | |
| TTCTTATCCTCCGGCATCGT+TGG | + | chr6_3:21663836-21663855 | None:intergenic | 50.0% | |
| TGACTCGCTCACGAGTTCTT+TGG | - | chr6_3:21663892-21663911 | Msa0944700:CDS | 50.0% | |
| TGGTGCAGCTCTTTGCTTGA+AGG | - | chr6_3:21663928-21663947 | Msa0944700:CDS | 50.0% | |
| GGTTTGCCAGAATGTTGCTG+TGG | - | chr6_3:21664003-21664022 | Msa0944700:intron | 50.0% | |
| CTAACGCCACAGCAACATTC+TGG | + | chr6_3:21664012-21664031 | None:intergenic | 50.0% | |
| GCTCGACTGCTCATACAATC+CGG | - | chr6_3:21664115-21664134 | Msa0944700:intron | 50.0% | |
| CTCGACTGCTCATACAATCC+GGG | - | chr6_3:21664116-21664135 | Msa0944700:intron | 50.0% | |
| GACATTTAACATGCGCAGCC+CGG | + | chr6_3:21664137-21664156 | None:intergenic | 50.0% | |
| GTCAGTGGAGAGTCTATGGA+TGG | - | chr6_3:21664154-21664173 | Msa0944700:intron | 50.0% | |
| GCGGTTCGCAGCTATTCAAA+TGG | - | chr6_3:21664189-21664208 | Msa0944700:intron | 50.0% | |
| !! | TCCACGGAGTATTTTCTCGG+AGG | - | chr6_3:21664237-21664256 | Msa0944700:intron | 50.0% |
| ACCTCCGAGAAAATACTCCG+TGG | + | chr6_3:21664241-21664260 | None:intergenic | 50.0% | |
| GCAGTGCCAGTCCGATAAAA+TGG | - | chr6_3:21664285-21664304 | Msa0944700:intron | 50.0% | |
| AGGCATGAAGAGTCCTGCTT+CGG | - | chr6_3:21664378-21664397 | Msa0944700:CDS | 50.0% | |
| CGTACTCTCGAATACTTCCC+TGG | - | chr6_3:21664496-21664515 | Msa0944700:CDS | 50.0% | |
| !! | AGGGGTTGATGTGTCTCTCA+AGG | - | chr6_3:21664624-21664643 | Msa0944700:CDS | 50.0% |
| !! | TCAAGTGCCGAGGAGAGAAA+TGG | - | chr6_3:21664658-21664677 | Msa0944700:CDS | 50.0% |
| TGCCGAGGAGAGAAATGGTA+TGG | - | chr6_3:21664663-21664682 | Msa0944700:CDS | 50.0% | |
| ATCCCCAGAAGTCCTAGACA+TGG | - | chr6_3:21664733-21664752 | Msa0944700:CDS | 50.0% | |
| AGAGAGCGAATGAGCCTCTT+TGG | + | chr6_3:21665130-21665149 | None:intergenic | 50.0% | |
| ! | AAGAGTACGGAAGCTCATGC+GGG | - | chr6_3:21665299-21665318 | Msa0944700:CDS | 50.0% |
| !! | CTGCGCTTGGTCTTTTGAAG+TGG | + | chr6_3:21665454-21665473 | None:intergenic | 50.0% |
| TCCGCAAACAAATCTGCGCT+TGG | + | chr6_3:21665467-21665486 | None:intergenic | 50.0% | |
| CTCGTGAGCGAGTCAGATAG+AGG | + | chr6_3:21663887-21663906 | None:intergenic | 55.0% | |
| AAGAGTCCTGCTTCGGTGAC+TGG | - | chr6_3:21664385-21664404 | Msa0944700:CDS | 55.0% | |
| TTGGAACCAGTCACCGAAGC+AGG | + | chr6_3:21664394-21664413 | None:intergenic | 55.0% | |
| CTTCCCTGGATATGGATCCC+TGG | - | chr6_3:21664510-21664529 | Msa0944700:CDS | 55.0% | |
| CAGCCAGGGATCCATATCCA+GGG | + | chr6_3:21664516-21664535 | None:intergenic | 55.0% | |
| TCAGCCAGGGATCCATATCC+AGG | + | chr6_3:21664517-21664536 | None:intergenic | 55.0% | |
| AGAGTACGGAAGCTCATGCG+GGG | - | chr6_3:21665300-21665319 | Msa0944700:CDS | 55.0% | |
| TGCGGGGATGGACAGTATCA+AGG | - | chr6_3:21665316-21665335 | Msa0944700:CDS | 55.0% | |
| GGGGATGGACAGTATCAAGG+AGG | - | chr6_3:21665319-21665338 | Msa0944700:CDS | 55.0% | |
| ! | CGGTCTGTTCTCAAGTGCCG+AGG | - | chr6_3:21664648-21664667 | Msa0944700:CDS | 60.0% |
| TACGGAAGCTCATGCGGGGA+TGG | - | chr6_3:21665304-21665323 | Msa0944700:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 21663303 | 21665803 | 21663303 | ID=Msa0944700;Name=Msa0944700 |
| chr6_3 | mRNA | 21663303 | 21665803 | 21663303 | ID=Msa0944700-mRNA-1;Parent=Msa0944700;Name=Msa0944700-mRNA-1;_AED=0.00;_eAED=0.00;_QI=173|1|1|1|1|1|2|233|596 |
| chr6_3 | exon | 21663303 | 21664015 | 21663303 | ID=Msa0944700-mRNA-1:exon:6480;Parent=Msa0944700-mRNA-1 |
| chr6_3 | exon | 21664320 | 21665803 | 21664320 | ID=Msa0944700-mRNA-1:exon:6479;Parent=Msa0944700-mRNA-1 |
| chr6_3 | five_prime_UTR | 21665631 | 21665803 | 21665631 | ID=Msa0944700-mRNA-1:five_prime_utr;Parent=Msa0944700-mRNA-1 |
| chr6_3 | CDS | 21664320 | 21665630 | 21664320 | ID=Msa0944700-mRNA-1:cds;Parent=Msa0944700-mRNA-1 |
| chr6_3 | CDS | 21663536 | 21664015 | 21663536 | ID=Msa0944700-mRNA-1:cds;Parent=Msa0944700-mRNA-1 |
| chr6_3 | three_prime_UTR | 21663303 | 21663535 | 21663303 | ID=Msa0944700-mRNA-1:three_prime_utr;Parent=Msa0944700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
