Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0583830 | XP_013444661.1 | 100.000 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 6.66e-89 | 264 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0583830 | sp|Q6T367|CENH3_ORYSJ | 61.468 | 109 | 42 | 0 | 17 | 125 | 52 | 160 | 2.19e-42 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0583830 | 0.828523 | 8.577327e-55 | -8.615850e-47 |
| Msa0021500 | Msa0583830 | 0.820300 | 7.376993e-53 | -8.615850e-47 |
| Msa0028420 | Msa0583830 | 0.864435 | 1.218981e-64 | -8.615850e-47 |
| Msa0030370 | Msa0583830 | 0.821056 | 4.945532e-53 | -8.615850e-47 |
| Msa0032430 | Msa0583830 | 0.808012 | 3.817756e-50 | -8.615850e-47 |
| Msa0042610 | Msa0583830 | 0.817285 | 3.569771e-52 | -8.615850e-47 |
| Msa0054690 | Msa0583830 | 0.806063 | 9.866447e-50 | -8.615850e-47 |
| Msa0074240 | Msa0583830 | 0.822005 | 2.985806e-53 | -8.615850e-47 |
| Msa0081090 | Msa0583830 | 0.801725 | 7.863860e-49 | -8.615850e-47 |
| Msa0081520 | Msa0583830 | 0.824665 | 7.138055e-54 | -8.615850e-47 |
| Msa0089630 | Msa0583830 | 0.821006 | 5.077160e-53 | -8.615850e-47 |
| Msa0090400 | Msa0583830 | 0.808068 | 3.714462e-50 | -8.615850e-47 |
| Msa0092790 | Msa0583830 | 0.837054 | 6.518980e-57 | -8.615850e-47 |
| Msa0097260 | Msa0583830 | 0.800362 | 1.493804e-48 | -8.615850e-47 |
| Msa0124060 | Msa0583830 | 0.850461 | 1.673302e-60 | -8.615850e-47 |
| Msa0124280 | Msa0583830 | 0.805700 | 1.176180e-49 | -8.615850e-47 |
| Msa0168500 | Msa0583830 | 0.850059 | 2.169040e-60 | -8.615850e-47 |
| Msa0172070 | Msa0583830 | 0.803886 | 2.814723e-49 | -8.615850e-47 |
| Msa0173730 | Msa0583830 | 0.800081 | 1.703561e-48 | -8.615850e-47 |
| Msa0173810 | Msa0583830 | 0.801642 | 8.175965e-49 | -8.615850e-47 |
| Msa0173890 | Msa0583830 | 0.804527 | 2.069527e-49 | -8.615850e-47 |
| Msa0178560 | Msa0583830 | 0.808426 | 3.115712e-50 | -8.615850e-47 |
| Msa0190570 | Msa0583830 | 0.802451 | 5.575958e-49 | -8.615850e-47 |
| Msa0221000 | Msa0583830 | 0.806335 | 8.645495e-50 | -8.615850e-47 |
| Msa0223080 | Msa0583830 | 0.822547 | 2.235055e-53 | -8.615850e-47 |
| Msa0225100 | Msa0583830 | 0.801761 | 7.732089e-49 | -8.615850e-47 |
| Msa0225860 | Msa0583830 | 0.830794 | 2.402564e-55 | -8.615850e-47 |
| Msa0369790 | Msa0583830 | 0.800786 | 1.223743e-48 | -8.615850e-47 |
| Msa0371030 | Msa0583830 | 0.930334 | 1.906259e-93 | -8.615850e-47 |
| Msa0378720 | Msa0583830 | 0.823483 | 1.352152e-53 | -8.615850e-47 |
| Msa0467490 | Msa0583830 | 0.802021 | 6.834765e-49 | -8.615850e-47 |
| Msa0474730 | Msa0583830 | 0.827054 | 1.933896e-54 | -8.615850e-47 |
| Msa0253700 | Msa0583830 | 0.804588 | 2.009992e-49 | -8.615850e-47 |
| Msa0267110 | Msa0583830 | 0.803012 | 4.270939e-49 | -8.615850e-47 |
| Msa0277180 | Msa0583830 | 0.809214 | 2.113203e-50 | -8.615850e-47 |
| Msa0287740 | Msa0583830 | 0.808335 | 3.258222e-50 | -8.615850e-47 |
| Msa0292400 | Msa0583830 | 0.813790 | 2.141483e-51 | -8.615850e-47 |
| Msa0298470 | Msa0583830 | 0.826226 | 3.046910e-54 | -8.615850e-47 |
| Msa0302160 | Msa0583830 | 0.816905 | 4.346462e-52 | -8.615850e-47 |
| Msa0310850 | Msa0583830 | 0.809526 | 1.811913e-50 | -8.615850e-47 |
| Msa0316810 | Msa0583830 | 0.804668 | 1.934219e-49 | -8.615850e-47 |
| Msa0330380 | Msa0583830 | 0.810321 | 1.221961e-50 | -8.615850e-47 |
| Msa0337700 | Msa0583830 | 0.812948 | 3.278178e-51 | -8.615850e-47 |
| Msa0339490 | Msa0583830 | 0.817359 | 3.436103e-52 | -8.615850e-47 |
| Msa0339500 | Msa0583830 | 0.826089 | 3.284790e-54 | -8.615850e-47 |
| Msa0340500 | Msa0583830 | 0.813497 | 2.483873e-51 | -8.615850e-47 |
| Msa0530780 | Msa0583830 | 0.814909 | 1.211946e-51 | -8.615850e-47 |
| Msa0532070 | Msa0583830 | 0.804258 | 2.354603e-49 | -8.615850e-47 |
| Msa0569200 | Msa0583830 | 0.839782 | 1.289678e-57 | -8.615850e-47 |
| Msa0580370 | Msa0583830 | 0.849955 | 2.318640e-60 | -8.615850e-47 |
| Msa0583830 | Msa0590830 | 0.805073 | 1.591751e-49 | -8.615850e-47 |
| Msa0583830 | Msa0626450 | 0.810342 | 1.209157e-50 | -8.615850e-47 |
| Msa0583830 | Msa0626490 | 0.805599 | 1.235085e-49 | -8.615850e-47 |
| Msa0583830 | Msa0658640 | 0.805977 | 1.028834e-49 | -8.615850e-47 |
| Msa0583830 | Msa0661150 | 0.810134 | 1.340548e-50 | -8.615850e-47 |
| Msa0583830 | Msa0664600 | 0.807953 | 3.928781e-50 | -8.615850e-47 |
| Msa0583830 | Msa0765240 | 0.811534 | 6.673931e-51 | -8.615850e-47 |
| Msa0583830 | Msa0795870 | 0.846618 | 1.939184e-59 | -8.615850e-47 |
| Msa0583830 | Msa0833650 | 0.845823 | 3.193972e-59 | -8.615850e-47 |
| Msa0583830 | Msa0861510 | 0.801899 | 7.242031e-49 | -8.615850e-47 |
| Msa0583830 | Msa0861600 | 0.804814 | 1.803014e-49 | -8.615850e-47 |
| Msa0583830 | Msa0873730 | 0.803629 | 3.182017e-49 | -8.615850e-47 |
| Msa0583830 | Msa0902510 | 0.804903 | 1.727311e-49 | -8.615850e-47 |
| Msa0583830 | Msa0944700 | 0.844298 | 8.245640e-59 | -8.615850e-47 |
| Msa0583830 | Msa0945110 | 0.807275 | 5.472672e-50 | -8.615850e-47 |
| Msa0583830 | Msa1019470 | 0.809298 | 2.027170e-50 | -8.615850e-47 |
| Msa0583830 | Msa1020670 | 0.803670 | 3.120411e-49 | -8.615850e-47 |
| Msa0583830 | Msa1045140 | 0.816294 | 5.954643e-52 | -8.615850e-47 |
| Msa0583830 | Msa1048920 | 0.812318 | 4.502220e-51 | -8.615850e-47 |
| Msa0583830 | Msa1078170 | 0.805463 | 1.319002e-49 | -8.615850e-47 |
| Msa0583830 | Msa1103990 | 0.827819 | 1.267289e-54 | -8.615850e-47 |
| Msa0583830 | Msa1123380 | 0.817613 | 3.010629e-52 | -8.615850e-47 |
| Msa0583830 | Msa1132840 | 0.850479 | 1.653236e-60 | -8.615850e-47 |
| Msa0583830 | Msa1177320 | 0.954597 | 2.068399e-112 | -8.615850e-47 |
| Msa0583830 | Msa1186020 | 0.802690 | 4.977836e-49 | -8.615850e-47 |
| Msa0583830 | Msa1226520 | 0.809622 | 1.727407e-50 | -8.615850e-47 |
| Msa0583830 | Msa1293870 | 0.808336 | 3.256647e-50 | -8.615850e-47 |
| Msa0583830 | Msa1333080 | 0.800425 | 1.450090e-48 | -8.615850e-47 |
| Msa0583830 | Msa1343170 | 0.801254 | 9.818692e-49 | -8.615850e-47 |
| Msa0583830 | Msa1343180 | 0.808186 | 3.504297e-50 | -8.615850e-47 |
| Msa0583830 | Msa1372230 | 0.815454 | 9.168743e-52 | -8.615850e-47 |
| Msa0583830 | Msa1373100 | 0.818734 | 1.679056e-52 | -8.615850e-47 |
| Msa0583830 | Msa1390440 | 0.801678 | 8.040658e-49 | -8.615850e-47 |
| Msa0583830 | Msa1396030 | 0.826979 | 2.014566e-54 | -8.615850e-47 |
| Msa0583830 | Msa1422950 | 0.818581 | 1.818802e-52 | -8.615850e-47 |
| Msa0583830 | Msa1440880 | 0.818245 | 2.167624e-52 | -8.615850e-47 |
| Msa0583830 | Msa1440960 | 0.801898 | 7.246389e-49 | -8.615850e-47 |
| Msa0583830 | Msa1446810 | 0.820926 | 5.297438e-53 | -8.615850e-47 |
| Msa0583830 | Msa1446820 | 0.814138 | 1.794411e-51 | -8.615850e-47 |
| Msa0583830 | Msa1451160 | 0.821462 | 3.986673e-53 | -8.615850e-47 |
| Msa0583830 | Msa1465440 | 0.811110 | 8.245475e-51 | -8.615850e-47 |
| Msa0583830 | Msa1466920 | 0.810244 | 1.269546e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0583830 | MtrunA17_Chr8g0347231 | 100.000 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 6.13e-93 | 264 |
| Msa0583830 | MtrunA17_Chr8g0388121 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 2.40e-32 | 111 |
| Msa0583830 | MtrunA17_Chr4g0054161 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 7.79e-32 | 109 |
| Msa0583830 | MtrunA17_Chr8g0363741 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 7.79e-32 | 109 |
| Msa0583830 | MtrunA17_Chr1g0156021 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 7.79e-32 | 109 |
| Msa0583830 | MtrunA17_Chr4g0054151 | 50.000 | 118 | 58 | 1 | 8 | 125 | 20 | 136 | 7.94e-32 | 109 |
| Msa0583830 | MtrunA17_Chr5g0410931 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.40e-30 | 106 |
| Msa0583830 | MtrunA17_Chr5g0410951 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.40e-30 | 106 |
| Msa0583830 | MtrunA17_Chr8g0383851 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.40e-30 | 106 |
| Msa0583830 | MtrunA17_Chr8g0383781 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.40e-30 | 106 |
| Msa0583830 | MtrunA17_Chr8g0390361 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.40e-30 | 106 |
| Msa0583830 | MtrunA17_Chr2g0295191 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.40e-30 | 106 |
| Msa0583830 | MtrunA17_Chr7g0237661 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.40e-30 | 106 |
| Msa0583830 | MtrunA17_Chr4g0033041 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.40e-30 | 106 |
| Msa0583830 | MtrunA17_Chr7g0218971 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.40e-30 | 106 |
| Msa0583830 | MtrunA17_Chr4g0046301 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.40e-30 | 106 |
| Msa0583830 | MtrunA17_Chr8g0364801 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.40e-30 | 106 |
| Msa0583830 | MtrunA17_Chr2g0319141 | 48.305 | 118 | 60 | 1 | 8 | 125 | 17 | 133 | 2.77e-30 | 105 |
| Msa0583830 | MtrunA17_Chr2g0319151 | 48.305 | 118 | 60 | 1 | 8 | 125 | 17 | 133 | 2.77e-30 | 105 |
| Msa0583830 | MtrunA17_Chr2g0319131 | 53.922 | 102 | 46 | 1 | 24 | 125 | 43 | 143 | 2.00e-29 | 103 |
| Msa0583830 | MtrunA17_Chr2g0319121 | 55.102 | 98 | 44 | 0 | 28 | 125 | 36 | 133 | 4.80e-29 | 102 |
| Msa0583830 | MtrunA17_Chr7g0222991 | 44.898 | 98 | 53 | 1 | 28 | 125 | 45 | 141 | 1.74e-23 | 89.0 |
| Msa0583830 | MtrunA17_Chr7g0218961 | 47.273 | 110 | 54 | 2 | 14 | 123 | 3 | 108 | 1.77e-23 | 87.8 |
| Msa0583830 | MtrunA17_Chr7g0223001 | 38.298 | 94 | 56 | 1 | 34 | 125 | 52 | 145 | 8.43e-19 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0583830 | AT1G01370.2 | 63.725 | 102 | 36 | 1 | 27 | 127 | 74 | 175 | 5.65e-41 | 134 |
| Msa0583830 | AT1G01370.1 | 63.725 | 102 | 36 | 1 | 27 | 127 | 74 | 175 | 5.65e-41 | 134 |
| Msa0583830 | AT1G01370.4 | 63.725 | 102 | 36 | 1 | 27 | 127 | 74 | 175 | 5.65e-41 | 134 |
| Msa0583830 | AT1G01370.3 | 63.725 | 102 | 36 | 1 | 27 | 127 | 74 | 175 | 5.65e-41 | 134 |
| Msa0583830 | AT4G40030.3 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 1.07e-31 | 109 |
| Msa0583830 | AT4G40030.1 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 1.07e-31 | 109 |
| Msa0583830 | AT4G40030.4 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 1.07e-31 | 109 |
| Msa0583830 | AT5G10980.1 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 1.07e-31 | 109 |
| Msa0583830 | AT4G40040.2 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 1.07e-31 | 109 |
| Msa0583830 | AT4G40040.3 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 1.07e-31 | 109 |
| Msa0583830 | AT4G40040.1 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 1.07e-31 | 109 |
| Msa0583830 | AT1G19890.1 | 55.102 | 98 | 43 | 1 | 28 | 125 | 38 | 134 | 1.16e-31 | 109 |
| Msa0583830 | AT4G40030.2 | 50.000 | 118 | 58 | 1 | 8 | 125 | 45 | 161 | 1.69e-31 | 110 |
| Msa0583830 | AT1G75600.1 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 3.34e-31 | 108 |
| Msa0583830 | AT1G09200.1 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.44e-30 | 107 |
| Msa0583830 | AT5G65360.1 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.44e-30 | 107 |
| Msa0583830 | AT5G10390.1 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.44e-30 | 107 |
| Msa0583830 | AT5G10400.1 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.44e-30 | 107 |
| Msa0583830 | AT3G27360.1 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.44e-30 | 107 |
| Msa0583830 | AT1G13370.1 | 55.208 | 96 | 42 | 1 | 28 | 123 | 37 | 131 | 3.30e-29 | 103 |
| Msa0583830 | AT5G65350.1 | 52.041 | 98 | 46 | 1 | 28 | 125 | 37 | 133 | 9.86e-29 | 102 |
| Msa0583830 | AT5G12910.1 | 54.082 | 98 | 44 | 1 | 28 | 125 | 32 | 128 | 2.79e-28 | 100 |
Find 39 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAATTTCAAATTAAAATT+AGG | 0.184055 | 4_2:+2566932 | Msa0583830:three_prime_UTR |
| TTTGGTTGTCTCAGTGAAAA+AGG | 0.239991 | 4_2:+2566787 | Msa0583830:intron |
| GAGTTGACCCGTAGGCTTAC+AGG | 0.284958 | 4_2:+2566815 | Msa0583830:CDS |
| TGAACCATCATTGTAGAAAA+AGG | 0.287523 | 4_2:+2567017 | Msa0583830:three_prime_UTR |
| TACCTCTTGAAGTGCTAATA+AGG | 0.302455 | 4_2:-2563847 | None:intergenic |
| TCGCGAAGCGCAACTGTTCC+TGG | 0.319244 | 4_2:-2561923 | None:intergenic |
| TCAAATTAAAATTAGGTACT+AGG | 0.337027 | 4_2:+2566939 | Msa0583830:three_prime_UTR |
| GATTACAAACCAACTATCTA+TGG | 0.360641 | 4_2:+2563800 | Msa0583830:CDS |
| GTAGGCAGCTGAGGAGCATC+TGG | 0.392268 | 4_2:+2565719 | Msa0583830:intron |
| TAACTTATTTAAATTGTAGC+AGG | 0.420714 | 4_2:+2567073 | Msa0583830:three_prime_UTR |
| CTGAGGAAAAGAAGAAAAGA+AGG | 0.420759 | 4_2:+2561894 | Msa0583830:CDS |
| ATCTGAACTTCGCGGTTCAA+TGG | 0.441543 | 4_2:+2561719 | Msa0583830:exon |
| CGAGATTCGTAAATTTCAAA+AGG | 0.441799 | 4_2:+2561943 | Msa0583830:CDS |
| GTGATACCTCCATAGATAGT+TGG | 0.459811 | 4_2:-2563809 | None:intergenic |
| ACCCGTAGGCTTACAGGAAT+AGG | 0.465693 | 4_2:+2566821 | Msa0583830:CDS |
| ATTCATGTATTTACTTGTTG+TGG | 0.477104 | 4_2:+2567118 | Msa0583830:three_prime_UTR |
| CATCTGGTTCGTATGTTTGA+GGG | 0.478828 | 4_2:+2565735 | Msa0583830:CDS |
| GCATCTGGTTCGTATGTTTG+AGG | 0.487530 | 4_2:+2565734 | Msa0583830:CDS |
| ATCCTATTCCTGTAAGCCTA+CGG | 0.499010 | 4_2:-2566823 | None:intergenic |
| GGTATCACGCTGGACGGCTG+AGG | 0.513698 | 4_2:+2563824 | Msa0583830:CDS |
| CTACGACGAGTGCGTTTACC+AGG | 0.516556 | 4_2:-2561765 | None:intergenic |
| GTCAAGCACATTCCACGTCC+TGG | 0.519981 | 4_2:+2561747 | Msa0583830:CDS |
| AAACTTACGCATCTAACAAA+CGG | 0.525872 | 4_2:-2561992 | None:intergenic |
| TCCTATTCCTGTAAGCCTAC+GGG | 0.528638 | 4_2:-2566822 | None:intergenic |
| AAGTCAAAATCTGAACTTCG+CGG | 0.537494 | 4_2:+2561711 | Msa0583830:five_prime_UTR |
| CGTCGTAGCAGTAGTAGTAA+TGG | 0.540770 | 4_2:+2561780 | Msa0583830:CDS |
| TATATAGCAACAATCACTAC+AGG | 0.561553 | 4_2:-2566867 | None:intergenic |
| AACTTATTTAAATTGTAGCA+GGG | 0.563888 | 4_2:+2567074 | Msa0583830:three_prime_UTR |
| GAAAATCTTGTAGGCAGCTG+AGG | 0.568090 | 4_2:+2565710 | Msa0583830:intron |
| CTGGTTCGTATGTTTGAGGG+TGG | 0.577944 | 4_2:+2565738 | Msa0583830:CDS |
| CGAGTGCGTTTACCAGGACG+TGG | 0.589441 | 4_2:-2561759 | None:intergenic |
| TATGGAGGTATCACGCTGGA+CGG | 0.590985 | 4_2:+2563818 | Msa0583830:CDS |
| TTGGGGTATACAAGCAGCAA+TGG | 0.592465 | 4_2:-2566914 | None:intergenic |
| CATCTAACAAACGGAGCACA+AGG | 0.593820 | 4_2:-2561983 | None:intergenic |
| AAGAAAAGAAGGAATAGACC+AGG | 0.594091 | 4_2:+2561905 | Msa0583830:CDS |
| GGCCTTATTAGCACTTCAAG+AGG | 0.637546 | 4_2:+2563845 | Msa0583830:CDS |
| AGGATCTTGAGTTGACCCGT+AGG | 0.666475 | 4_2:+2566807 | Msa0583830:CDS |
| TACAAACCAACTATCTATGG+AGG | 0.667342 | 4_2:+2563803 | Msa0583830:CDS |
| TATCTATGGAGGTATCACGC+TGG | 0.705952 | 4_2:+2563814 | Msa0583830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTATATTTTTTTAGTGTA+CGG | + | chr4_2:2562167-2562186 | Msa0583830:intron | 15.0% |
| !!! | CTTTAAGAGATATAAATAAT+TGG | + | chr4_2:2562341-2562360 | Msa0583830:intron | 15.0% |
| !! | GGTAATAAACTAATAATTTA+AGG | + | chr4_2:2562439-2562458 | Msa0583830:intron | 15.0% |
| !!! | CTTCATCTTAATTTTATATT+TGG | + | chr4_2:2563274-2563293 | Msa0583830:intron | 15.0% |
| !!! | TTTTTAAATTATGAAGAATC+CGG | + | chr4_2:2563921-2563940 | Msa0583830:intron | 15.0% |
| !! | TAAGAATCTATGAAATAAAA+CGG | - | chr4_2:2563947-2563966 | None:intergenic | 15.0% |
| !! | ACTGAAAATAAATAACATAA+AGG | + | chr4_2:2565250-2565269 | Msa0583830:intron | 15.0% |
| !! | CTGAAAATAAATAACATAAA+GGG | + | chr4_2:2565251-2565270 | Msa0583830:intron | 15.0% |
| !! | ATCTTAAATAGCTATTAAAA+AGG | + | chr4_2:2565602-2565621 | Msa0583830:intron | 15.0% |
| !! | AAATTAAATCAACTTACTAA+GGG | - | chr4_2:2565796-2565815 | None:intergenic | 15.0% |
| !! | AAAATTAAATCAACTTACTA+AGG | - | chr4_2:2565797-2565816 | None:intergenic | 15.0% |
| !!! | AATTAAAACCTAAAATGTTT+TGG | - | chr4_2:2566296-2566315 | None:intergenic | 15.0% |
| !!! | CAATTTTTATTAACATTAAC+AGG | + | chr4_2:2566464-2566483 | Msa0583830:intron | 15.0% |
| !!! | CTAATTTTAATTTGAAATTG+GGG | - | chr4_2:2566934-2566953 | None:intergenic | 15.0% |
| !!! | CCTAATTTTAATTTGAAATT+GGG | - | chr4_2:2566935-2566954 | None:intergenic | 15.0% |
| !!! | ACCTAATTTTAATTTGAAAT+TGG | - | chr4_2:2566936-2566955 | None:intergenic | 15.0% |
| !!! | TTTTTAATGTGCTGTTAATT+AGG | + | chr4_2:2562062-2562081 | Msa0583830:intron | 20.0% |
| !! | AAACTCTCTTAAATTATTAC+TGG | - | chr4_2:2562144-2562163 | None:intergenic | 20.0% |
| !!! | AGTAAAATTAATTTTGCATC+TGG | - | chr4_2:2562634-2562653 | None:intergenic | 20.0% |
| !!! | TGACATTTTTTTTATACAGA+TGG | + | chr4_2:2562850-2562869 | Msa0583830:intron | 20.0% |
| !! | AAAGTTCTTATAATTTCATG+TGG | - | chr4_2:2563328-2563347 | None:intergenic | 20.0% |
| !! | AATTTCAACTTAATACAAAG+AGG | - | chr4_2:2563461-2563480 | None:intergenic | 20.0% |
| !!! | TTTTCCAAGTAATAACTTAT+GGG | - | chr4_2:2563597-2563616 | None:intergenic | 20.0% |
| !!! | ATTTTCCAAGTAATAACTTA+TGG | - | chr4_2:2563598-2563617 | None:intergenic | 20.0% |
| !!! | AAATTAAAGCAAAAAGCATA+GGG | - | chr4_2:2563762-2563781 | None:intergenic | 20.0% |
| !! | ATAATAGAACCATATGAAAA+AGG | - | chr4_2:2563878-2563897 | None:intergenic | 20.0% |
| !! | AGAAAATAAATCAATACCAA+CGG | - | chr4_2:2564546-2564565 | None:intergenic | 20.0% |
| !! | TTTCAGTAATAAATAGAGAA+GGG | - | chr4_2:2565237-2565256 | None:intergenic | 20.0% |
| !!! | TTTTCAGTAATAAATAGAGA+AGG | - | chr4_2:2565238-2565257 | None:intergenic | 20.0% |
| !! | ATCTGTTAGACTTTATATTA+TGG | - | chr4_2:2565298-2565317 | None:intergenic | 20.0% |
| !! | TTATGAATTGTGTATCTTAT+TGG | + | chr4_2:2565451-2565470 | Msa0583830:intron | 20.0% |
| !! | AAATAGCTATTAAAAAGGAA+CGG | + | chr4_2:2565607-2565626 | Msa0583830:intron | 20.0% |
| !! | AAGAAAAATTAACGAAAGAA+GGG | - | chr4_2:2565683-2565702 | None:intergenic | 20.0% |
| !! | AAAGAAAAATTAACGAAAGA+AGG | - | chr4_2:2565684-2565703 | None:intergenic | 20.0% |
| !! | CATTCATCATCAAAATAAAA+AGG | - | chr4_2:2565890-2565909 | None:intergenic | 20.0% |
| !! | AAATGTGATACCAAATTAAA+AGG | - | chr4_2:2566113-2566132 | None:intergenic | 20.0% |
| !! | TTTATCTAGAGGAAAATAAA+TGG | + | chr4_2:2566621-2566640 | Msa0583830:intron | 20.0% |
| !! | CATGAAAATACTATTCATAA+GGG | - | chr4_2:2566739-2566758 | None:intergenic | 20.0% |
| !! | ACATGAAAATACTATTCATA+AGG | - | chr4_2:2566740-2566759 | None:intergenic | 20.0% |
| !! | TCAAATAACAGATGTTAATA+AGG | - | chr4_2:2566764-2566783 | None:intergenic | 20.0% |
| !!! | ACATCTGTTATTTGATATTT+TGG | + | chr4_2:2566769-2566788 | Msa0583830:intron | 20.0% |
| !! | CCCAATTTCAAATTAAAATT+AGG | + | chr4_2:2566932-2566951 | Msa0583830:three_prime_UTR | 20.0% |
| !! | TCAAATTAAAATTAGGTACT+AGG | + | chr4_2:2566939-2566958 | Msa0583830:three_prime_UTR | 20.0% |
| !! | TAACTTATTTAAATTGTAGC+AGG | + | chr4_2:2567073-2567092 | Msa0583830:three_prime_UTR | 20.0% |
| !! | AACTTATTTAAATTGTAGCA+GGG | + | chr4_2:2567074-2567093 | Msa0583830:three_prime_UTR | 20.0% |
| !! | CAAAATTTGTTCTATATCTC+TGG | + | chr4_2:2562673-2562692 | Msa0583830:intron | 25.0% |
| !!! | TATATCTCTGGAATCAATTT+TGG | + | chr4_2:2562685-2562704 | Msa0583830:intron | 25.0% |
| !! | TTTGTAGTTGATATGAACTT+AGG | + | chr4_2:2562886-2562905 | Msa0583830:intron | 25.0% |
| !!! | ATTTTTTTGTGTGACTTGTA+TGG | + | chr4_2:2562983-2563002 | Msa0583830:intron | 25.0% |
| ! | AAATTAATTTCAACTAACGC+GGG | - | chr4_2:2563254-2563273 | None:intergenic | 25.0% |
| ! | GAAATTAATTTCAACTAACG+CGG | - | chr4_2:2563255-2563274 | None:intergenic | 25.0% |
| ! | GTTAGTTACTTATGTTAGTT+TGG | + | chr4_2:2563360-2563379 | Msa0583830:intron | 25.0% |
| ! | ACTTGGAAAATAATTGAAAC+TGG | + | chr4_2:2563607-2563626 | Msa0583830:intron | 25.0% |
| ! | TCTAGAAGATAATTTACACT+TGG | + | chr4_2:2563659-2563678 | Msa0583830:intron | 25.0% |
| !! | TGTCATTTCAACAAATCATA+GGG | - | chr4_2:2563685-2563704 | None:intergenic | 25.0% |
| !! | ATGTCATTTCAACAAATCAT+AGG | - | chr4_2:2563686-2563705 | None:intergenic | 25.0% |
| !! | CAAATTAAAGCAAAAAGCAT+AGG | - | chr4_2:2563763-2563782 | None:intergenic | 25.0% |
| !! | TCAGTTTTTCATCTTTTATC+AGG | - | chr4_2:2564126-2564145 | None:intergenic | 25.0% |
| !! | TTATCATTTTCAATATCCGT+TGG | + | chr4_2:2564527-2564546 | Msa0583830:intron | 25.0% |
| !!! | GATTTATTTTCTCTTTCCTA+TGG | + | chr4_2:2564554-2564573 | Msa0583830:intron | 25.0% |
| ! | AATATAGCCATGTATACAAA+TGG | + | chr4_2:2564580-2564599 | Msa0583830:intron | 25.0% |
| ! | ATATAGCCATGTATACAAAT+GGG | + | chr4_2:2564581-2564600 | Msa0583830:intron | 25.0% |
| !!! | TTAAGATAGCTTGCTATATA+TGG | + | chr4_2:2564649-2564668 | Msa0583830:intron | 25.0% |
| ! | CAAAGATTAGAGAAATGATA+TGG | + | chr4_2:2564848-2564867 | Msa0583830:intron | 25.0% |
| !!! | ATATTGCTTTTAAGATTGGT+GGG | + | chr4_2:2564976-2564995 | Msa0583830:intron | 25.0% |
| !!! | TAGAAACTGACTTTTATTGA+TGG | + | chr4_2:2565032-2565051 | Msa0583830:intron | 25.0% |
| ! | TAATAAATAGAGAAGGGAAA+GGG | - | chr4_2:2565231-2565250 | None:intergenic | 25.0% |
| ! | GAAAATTGAAAACACAGTTT+AGG | - | chr4_2:2565380-2565399 | None:intergenic | 25.0% |
| !!! | TTTTGAGATTACATTTCGTA+TGG | + | chr4_2:2565650-2565669 | Msa0583830:intron | 25.0% |
| !!! | TTTGTTGTTGAAAATCTTGT+AGG | + | chr4_2:2565701-2565720 | Msa0583830:intron | 25.0% |
| ! | ATCGATGAAAATAAAAACAG+GGG | - | chr4_2:2565829-2565848 | None:intergenic | 25.0% |
| ! | GATCGATGAAAATAAAAACA+GGG | - | chr4_2:2565830-2565849 | None:intergenic | 25.0% |
| ! | TGATCGATGAAAATAAAAAC+AGG | - | chr4_2:2565831-2565850 | None:intergenic | 25.0% |
| ! | AATATGTATACTAGAGAAAG+AGG | + | chr4_2:2565996-2566015 | Msa0583830:intron | 25.0% |
| ! | ATTAAAAGGATGGGAAATAA+TGG | - | chr4_2:2566099-2566118 | None:intergenic | 25.0% |
| !!! | TATTTCCCATCCTTTTAATT+TGG | + | chr4_2:2566100-2566119 | Msa0583830:intron | 25.0% |
| ! | TGATACCAAATTAAAAGGAT+GGG | - | chr4_2:2566108-2566127 | None:intergenic | 25.0% |
| !!! | ACAGAGTTTTATTTATCTAG+AGG | + | chr4_2:2566610-2566629 | Msa0583830:intron | 25.0% |
| !! | AAATCCTTTTTCTACAATGA+TGG | - | chr4_2:2567024-2567043 | None:intergenic | 25.0% |
| !! | ATTCATGTATTTACTTGTTG+TGG | + | chr4_2:2567118-2567137 | Msa0583830:three_prime_UTR | 25.0% |
| !!! | AAAACGAGGGTTTTAGAAAT+TGG | - | chr4_2:2561812-2561831 | None:intergenic | 30.0% |
| ATGTGAAATTGTGAAAACGA+GGG | - | chr4_2:2561825-2561844 | None:intergenic | 30.0% | |
| AATGTGAAATTGTGAAAACG+AGG | - | chr4_2:2561826-2561845 | None:intergenic | 30.0% | |
| CGAGATTCGTAAATTTCAAA+AGG | + | chr4_2:2561943-2561962 | Msa0583830:CDS | 30.0% | |
| AAACTTACGCATCTAACAAA+CGG | - | chr4_2:2561995-2562014 | None:intergenic | 30.0% | |
| !! | ATTAGGTTTTAGTAGTACCA+CGG | + | chr4_2:2562079-2562098 | Msa0583830:intron | 30.0% |
| !! | GCAGTGACAAAAATTGATTT+TGG | + | chr4_2:2562488-2562507 | Msa0583830:intron | 30.0% |
| GCGTTTATTATCGAAATTAC+AGG | + | chr4_2:2562590-2562609 | Msa0583830:intron | 30.0% | |
| ! | TGTATGTTTGGTTTCACTAT+CGG | - | chr4_2:2562716-2562735 | None:intergenic | 30.0% |
| TAACGAAGTTTGATATGTGT+AGG | - | chr4_2:2562761-2562780 | None:intergenic | 30.0% | |
| ! | ATTTCTTCGATTTGAAGTGT+GGG | + | chr4_2:2562800-2562819 | Msa0583830:intron | 30.0% |
| !! | GGAAAAGGAAAACTTGTTTT+TGG | + | chr4_2:2562910-2562929 | Msa0583830:intron | 30.0% |
| !! | ATTTTTCAACACGTACTTGT+TGG | + | chr4_2:2563085-2563104 | Msa0583830:intron | 30.0% |
| ! | CCTTTTTACATAACTGATCA+TGG | - | chr4_2:2563392-2563411 | None:intergenic | 30.0% |
| CCATGATCAGTTATGTAAAA+AGG | + | chr4_2:2563389-2563408 | Msa0583830:intron | 30.0% | |
| !! | TTGCTTTAATTTGTGTCTGT+AGG | + | chr4_2:2563770-2563789 | Msa0583830:intron | 30.0% |
| GATTACAAACCAACTATCTA+TGG | + | chr4_2:2563800-2563819 | Msa0583830:CDS | 30.0% | |
| !! | GGTATGTTACCTTTTTCATA+TGG | + | chr4_2:2563866-2563885 | Msa0583830:intron | 30.0% |
| AATCTATGAAATAAAACGGC+CGG | - | chr4_2:2563943-2563962 | None:intergenic | 30.0% | |
| TAGATTCTTACGAATTCAAC+AGG | + | chr4_2:2563957-2563976 | Msa0583830:intron | 30.0% | |
| GGACATGAAAGTAAATTGTA+TGG | - | chr4_2:2564066-2564085 | None:intergenic | 30.0% | |
| AACTTAGCTGGAAAAGTTAT+GGG | - | chr4_2:2564087-2564106 | None:intergenic | 30.0% | |
| TCACATACAAGGTAAGTTAA+GGG | - | chr4_2:2564346-2564365 | None:intergenic | 30.0% | |
| TTCACATACAAGGTAAGTTA+AGG | - | chr4_2:2564347-2564366 | None:intergenic | 30.0% | |
| AACTTACCTTGTATGTGAAA+AGG | + | chr4_2:2564348-2564367 | Msa0583830:intron | 30.0% | |
| !! | CAATCAAGTTTTATCCAAGA+AGG | + | chr4_2:2564418-2564437 | Msa0583830:intron | 30.0% |
| AAGGAAAATGTTTGAACAGA+TGG | - | chr4_2:2564450-2564469 | None:intergenic | 30.0% | |
| ACAATGAGGAAAAGAAACAA+AGG | - | chr4_2:2564469-2564488 | None:intergenic | 30.0% | |
| ! | ACATGGCTATATTTTTCCAT+AGG | - | chr4_2:2564573-2564592 | None:intergenic | 30.0% |
| AAGATTCCCATTTGTATACA+TGG | - | chr4_2:2564590-2564609 | None:intergenic | 30.0% | |
| !! | ATATATGGTGTCTTTTGACT+CGG | + | chr4_2:2564664-2564683 | Msa0583830:intron | 30.0% |
| ATCCAGATGATCTTAATCAT+AGG | + | chr4_2:2564916-2564935 | Msa0583830:intron | 30.0% | |
| !!! | AGCGATATTGCTTTTAAGAT+TGG | + | chr4_2:2564972-2564991 | Msa0583830:intron | 30.0% |
| !!! | GATATTGCTTTTAAGATTGG+TGG | + | chr4_2:2564975-2564994 | Msa0583830:intron | 30.0% |
| TCTTTGTAATGTCTGTAATC+AGG | - | chr4_2:2565080-2565099 | None:intergenic | 30.0% | |
| AGAGATAGAATATTGTCACA+AGG | + | chr4_2:2565123-2565142 | Msa0583830:intron | 30.0% | |
| AATAAATAGAGAAGGGAAAG+GGG | - | chr4_2:2565230-2565249 | None:intergenic | 30.0% | |
| GTAATAAATAGAGAAGGGAA+AGG | - | chr4_2:2565232-2565251 | None:intergenic | 30.0% | |
| ACTAGTAAGTGTATAAGTGA+AGG | + | chr4_2:2565513-2565532 | Msa0583830:intron | 30.0% | |
| CTAGTAAGTGTATAAGTGAA+GGG | + | chr4_2:2565514-2565533 | Msa0583830:intron | 30.0% | |
| ACGAAATGTAATCTCAAAAC+AGG | - | chr4_2:2565649-2565668 | None:intergenic | 30.0% | |
| ! | TGATGAATGAAGCTTTATCT+TGG | + | chr4_2:2565901-2565920 | Msa0583830:intron | 30.0% |
| ! | GTATACATATTACTGACTGT+AGG | - | chr4_2:2565987-2566006 | None:intergenic | 30.0% |
| GTGATACCAAATTAAAAGGA+TGG | - | chr4_2:2566109-2566128 | None:intergenic | 30.0% | |
| GAAATGCAGTTTACAGAATT+CGG | + | chr4_2:2566196-2566215 | Msa0583830:intron | 30.0% | |
| AATCTTCCGAATGAATGAAT+GGG | - | chr4_2:2566245-2566264 | None:intergenic | 30.0% | |
| ATGAATAGAGATGGCTAATA+GGG | - | chr4_2:2566398-2566417 | None:intergenic | 30.0% | |
| TATGAATAGAGATGGCTAAT+AGG | - | chr4_2:2566399-2566418 | None:intergenic | 30.0% | |
| !!! | ATTTTTGTGTTGTTTTCCTG+TGG | + | chr4_2:2566515-2566534 | Msa0583830:intron | 30.0% |
| !!! | TTTTTGTGTTGTTTTCCTGT+GGG | + | chr4_2:2566516-2566535 | Msa0583830:intron | 30.0% |
| AACTGTCAACACAAGTTTAT+TGG | - | chr4_2:2566561-2566580 | None:intergenic | 30.0% | |
| TAAAACTCTGTTAGAGTCTT+CGG | - | chr4_2:2566601-2566620 | None:intergenic | 30.0% | |
| AGCAGAGACAAAATTATAAC+TGG | - | chr4_2:2566695-2566714 | None:intergenic | 30.0% | |
| TATATAGCAACAATCACTAC+AGG | - | chr4_2:2566870-2566889 | None:intergenic | 30.0% | |
| ! | TGTCAATAGCAATCTTTTGT+AGG | + | chr4_2:2566975-2566994 | Msa0583830:three_prime_UTR | 30.0% |
| TGAACCATCATTGTAGAAAA+AGG | + | chr4_2:2567017-2567036 | Msa0583830:three_prime_UTR | 30.0% | |
| AAGTCAAAATCTGAACTTCG+CGG | + | chr4_2:2561711-2561730 | Msa0583830:five_prime_UTR | 35.0% | |
| !! | TTTTTCAGCAAATGAGTCTG+AGG | + | chr4_2:2561877-2561896 | Msa0583830:intron | 35.0% |
| CTGAGGAAAAGAAGAAAAGA+AGG | + | chr4_2:2561894-2561913 | Msa0583830:CDS | 35.0% | |
| AAGAAAAGAAGGAATAGACC+AGG | + | chr4_2:2561905-2561924 | Msa0583830:CDS | 35.0% | |
| ATGTCAATTACTATCGTGTC+TGG | - | chr4_2:2562114-2562133 | None:intergenic | 35.0% | |
| GGCTGAAAGTGATTTATGTT+TGG | + | chr4_2:2562509-2562528 | Msa0583830:intron | 35.0% | |
| GAACACATGTAGTGTATGTT+TGG | - | chr4_2:2562728-2562747 | None:intergenic | 35.0% | |
| CAAACTTCGTTACATTTGAG+AGG | + | chr4_2:2562769-2562788 | Msa0583830:intron | 35.0% | |
| ! | CATTTCTTCGATTTGAAGTG+TGG | + | chr4_2:2562799-2562818 | Msa0583830:intron | 35.0% |
| ! | GTAGTTGATATGAACTTAGG+AGG | + | chr4_2:2562889-2562908 | Msa0583830:intron | 35.0% |
| GATATGAACTTAGGAGGAAA+AGG | + | chr4_2:2562895-2562914 | Msa0583830:intron | 35.0% | |
| ! | GACTTGTATGGCTTTTTATG+TGG | + | chr4_2:2562995-2563014 | Msa0583830:intron | 35.0% |
| TTTGATGAGCATGCTCTATA+TGG | + | chr4_2:2563022-2563041 | Msa0583830:intron | 35.0% | |
| CATGCTCTATATGGAAGTAA+TGG | + | chr4_2:2563031-2563050 | Msa0583830:intron | 35.0% | |
| TTGTCAAATAGCAGCTATAG+TGG | + | chr4_2:2563168-2563187 | Msa0583830:intron | 35.0% | |
| !! | GCTTTTCAATCAAAAGTGCA+TGG | - | chr4_2:2563573-2563592 | None:intergenic | 35.0% |
| AGCTCCCATAAGTTATTACT+TGG | + | chr4_2:2563590-2563609 | Msa0583830:intron | 35.0% | |
| GATTATTGAAGCTTCTCAAC+AGG | - | chr4_2:2563641-2563660 | None:intergenic | 35.0% | |
| ATGACATCCAGTCAAGTATT+TGG | + | chr4_2:2563699-2563718 | Msa0583830:intron | 35.0% | |
| ATTGGATGTTTGTTCTCACT+TGG | + | chr4_2:2563736-2563755 | Msa0583830:intron | 35.0% | |
| TACAAACCAACTATCTATGG+AGG | + | chr4_2:2563803-2563822 | Msa0583830:CDS | 35.0% | |
| ! | TACCTCTTGAAGTGCTAATA+AGG | - | chr4_2:2563850-2563869 | None:intergenic | 35.0% |
| !!! | CACTTCTGTTTTTGGTTTCA+GGG | + | chr4_2:2563989-2564008 | Msa0583830:intron | 35.0% |
| CAACTTAGCTGGAAAAGTTA+TGG | - | chr4_2:2564088-2564107 | None:intergenic | 35.0% | |
| CTACTGAACAATAGCTAGAT+TGG | + | chr4_2:2564251-2564270 | Msa0583830:intron | 35.0% | |
| ! | TAGATTGGTTAACACAGTTC+TGG | + | chr4_2:2564266-2564285 | Msa0583830:intron | 35.0% |
| ATTACAATCGTGCATTGCAA+CGG | - | chr4_2:2564313-2564332 | None:intergenic | 35.0% | |
| TCTTAACTATCTCATGCAAC+TGG | - | chr4_2:2564635-2564654 | None:intergenic | 35.0% | |
| TGTTAAAGGATACTCGTGTT+TGG | + | chr4_2:2564694-2564713 | Msa0583830:intron | 35.0% | |
| GTTAAAGGATACTCGTGTTT+GGG | + | chr4_2:2564695-2564714 | Msa0583830:intron | 35.0% | |
| TTAAAGGATACTCGTGTTTG+GGG | + | chr4_2:2564696-2564715 | Msa0583830:intron | 35.0% | |
| ! | GGAGTACATTTTATAGCTCA+TGG | + | chr4_2:2564728-2564747 | Msa0583830:intron | 35.0% |
| GTAGCTGAGATGATATTTCA+GGG | + | chr4_2:2564818-2564837 | Msa0583830:intron | 35.0% | |
| AAGATCATCTGGATTGCTAA+AGG | - | chr4_2:2564910-2564929 | None:intergenic | 35.0% | |
| CTCCTATGATTAAGATCATC+TGG | - | chr4_2:2564921-2564940 | None:intergenic | 35.0% | |
| CAGATGATCTTAATCATAGG+AGG | + | chr4_2:2564919-2564938 | Msa0583830:intron | 35.0% | |
| AGCTGTCAAATTTCTTGGAT+AGG | - | chr4_2:2565154-2565173 | None:intergenic | 35.0% | |
| ATCCAAGAAATTTGACAGCT+TGG | + | chr4_2:2565154-2565173 | Msa0583830:intron | 35.0% | |
| GGATAGTTATTGAGTGGTTA+TGG | - | chr4_2:2565189-2565208 | None:intergenic | 35.0% | |
| GTTATGGGATAGTTATTGAG+TGG | - | chr4_2:2565195-2565214 | None:intergenic | 35.0% | |
| !! | ATTGTTTTCATCAAAGCGCT+TGG | + | chr4_2:2566055-2566074 | Msa0583830:intron | 35.0% |
| TTACATGGTAAAGGCAATAG+TGG | - | chr4_2:2566147-2566166 | None:intergenic | 35.0% | |
| TAATGTACCCTCTCTTTACA+TGG | - | chr4_2:2566162-2566181 | None:intergenic | 35.0% | |
| CAATCTTCCGAATGAATGAA+TGG | - | chr4_2:2566246-2566265 | None:intergenic | 35.0% | |
| CATTCATTCATTCGGAAGAT+TGG | + | chr4_2:2566244-2566263 | Msa0583830:intron | 35.0% | |
| TTTGGTTGTCTCAGTGAAAA+AGG | + | chr4_2:2566787-2566806 | Msa0583830:intron | 35.0% | |
| ! | CAACACGTACTTGTTGGAAA+AGG | + | chr4_2:2563091-2563110 | Msa0583830:intron | 40.0% |
| GAAGCTTCTCAACAGGTATA+AGG | - | chr4_2:2563634-2563653 | None:intergenic | 40.0% | |
| AATGCAGCCAAATACTTGAC+TGG | - | chr4_2:2563709-2563728 | None:intergenic | 40.0% | |
| AGTCAAGTATTTGGCTGCAT+TGG | + | chr4_2:2563708-2563727 | Msa0583830:intron | 40.0% | |
| GTCAAGTATTTGGCTGCATT+GGG | + | chr4_2:2563709-2563728 | Msa0583830:intron | 40.0% | |
| GTGATACCTCCATAGATAGT+TGG | - | chr4_2:2563812-2563831 | None:intergenic | 40.0% | |
| ! | ATCCTTGGCACTTCTGTTTT+TGG | + | chr4_2:2563981-2564000 | Msa0583830:intron | 40.0% |
| !! | AACCAAAAACAGAAGTGCCA+AGG | - | chr4_2:2563986-2564005 | None:intergenic | 40.0% |
| !!! | GCACTTCTGTTTTTGGTTTC+AGG | + | chr4_2:2563988-2564007 | Msa0583830:intron | 40.0% |
| TTGGTTTCAGGGTAAACCAA+TGG | + | chr4_2:2564000-2564019 | Msa0583830:intron | 40.0% | |
| AAACCAATGGAAGAAGGAAG+TGG | + | chr4_2:2564013-2564032 | Msa0583830:intron | 40.0% | |
| AAGGAAGTGGAGTAAGTTGT+GGG | + | chr4_2:2564026-2564045 | Msa0583830:intron | 40.0% | |
| TTTCCAGCTAAGTTGCCAAA+AGG | + | chr4_2:2564093-2564112 | Msa0583830:intron | 40.0% | |
| ! | TTATCAGGTAAGCCTCCTTT+TGG | - | chr4_2:2564111-2564130 | None:intergenic | 40.0% |
| ! | GGTTAGTTGATGTTCAGTCA+TGG | + | chr4_2:2564287-2564306 | Msa0583830:intron | 40.0% |
| ! | AGATGGCCTTTTCACATACA+AGG | - | chr4_2:2564357-2564376 | None:intergenic | 40.0% |
| CTCAGACTGTAACTGTAAGA+TGG | - | chr4_2:2564374-2564393 | None:intergenic | 40.0% | |
| ACAGATGGAGAATTCCTTCT+TGG | - | chr4_2:2564435-2564454 | None:intergenic | 40.0% | |
| GAAGAAGCTTTCAGACAATG+AGG | - | chr4_2:2564483-2564502 | None:intergenic | 40.0% | |
| TAGCTCATGGATGTAGTATG+TGG | + | chr4_2:2564741-2564760 | Msa0583830:intron | 40.0% | |
| !! | GGATGTAGTATGTGGATTAG+TGG | + | chr4_2:2564749-2564768 | Msa0583830:intron | 40.0% |
| GCTCACTTGTACAAGGTTAA+CGG | + | chr4_2:2564796-2564815 | Msa0583830:intron | 40.0% | |
| GGTAGCTGAGATGATATTTC+AGG | + | chr4_2:2564817-2564836 | Msa0583830:intron | 40.0% | |
| AGAGAAATGATATGGCTGAC+AGG | + | chr4_2:2564856-2564875 | Msa0583830:intron | 40.0% | |
| ! | GGATTAGCAAGTGCTTTAGT+AGG | + | chr4_2:2564997-2565016 | Msa0583830:intron | 40.0% |
| GACCAAGCTGTCAAATTTCT+TGG | - | chr4_2:2565159-2565178 | None:intergenic | 40.0% | |
| ! | CATCTGGTTCGTATGTTTGA+GGG | + | chr4_2:2565735-2565754 | Msa0583830:CDS | 40.0% |
| AACTGAAGTAGCGTAGTTGT+TGG | + | chr4_2:2566021-2566040 | Msa0583830:intron | 40.0% | |
| ACTGAAGTAGCGTAGTTGTT+GGG | + | chr4_2:2566022-2566041 | Msa0583830:intron | 40.0% | |
| TGCCTTTACCATGTAAAGAG+AGG | + | chr4_2:2566151-2566170 | Msa0583830:intron | 40.0% | |
| GCCTTTACCATGTAAAGAGA+GGG | + | chr4_2:2566152-2566171 | Msa0583830:intron | 40.0% | |
| ACCCTCTCTTTACATGGTAA+AGG | - | chr4_2:2566156-2566175 | None:intergenic | 40.0% | |
| GGATCTCCCATTCATTCATT+CGG | + | chr4_2:2566236-2566255 | Msa0583830:intron | 40.0% | |
| ACCGTTCAATCAAGATTGGA+CGG | + | chr4_2:2566269-2566288 | Msa0583830:intron | 40.0% | |
| ACCGTCCAATCTTGATTGAA+CGG | - | chr4_2:2566273-2566292 | None:intergenic | 40.0% | |
| ! | TGGACGGTCCAAAACATTTT+AGG | + | chr4_2:2566285-2566304 | Msa0583830:intron | 40.0% |
| AGACGGTTTAGATTCAAGCT+CGG | - | chr4_2:2566339-2566358 | None:intergenic | 40.0% | |
| GCAACTCGTATGAATAGAGA+TGG | - | chr4_2:2566407-2566426 | None:intergenic | 40.0% | |
| TCTCTATTCATACGAGTTGC+AGG | + | chr4_2:2566407-2566426 | Msa0583830:intron | 40.0% | |
| GGAAAAGTTACGTCACTCTT+AGG | + | chr4_2:2566485-2566504 | Msa0583830:intron | 40.0% | |
| AATATGAAACTAGCTCCCAC+AGG | - | chr4_2:2566534-2566553 | None:intergenic | 40.0% | |
| ATCCTATTCCTGTAAGCCTA+CGG | - | chr4_2:2566826-2566845 | None:intergenic | 40.0% | |
| ATCTGAACTTCGCGGTTCAA+TGG | + | chr4_2:2561719-2561738 | Msa0583830:exon | 45.0% | |
| CGTCGTAGCAGTAGTAGTAA+TGG | + | chr4_2:2561780-2561799 | Msa0583830:CDS | 45.0% | |
| CATCTAACAAACGGAGCACA+AGG | - | chr4_2:2561986-2562005 | None:intergenic | 45.0% | |
| GTCGTATCTGGTGTTTGTGT+CGG | - | chr4_2:2562410-2562429 | None:intergenic | 45.0% | |
| ACCAGATACGACATCGACAT+TGG | + | chr4_2:2562418-2562437 | Msa0583830:intron | 45.0% | |
| ACCAATGTCGATGTCGTATC+TGG | - | chr4_2:2562422-2562441 | None:intergenic | 45.0% | |
| GAGTCAACTACGTGTCTGTT+TGG | + | chr4_2:2562461-2562480 | Msa0583830:intron | 45.0% | |
| ! | TCTTCGATTTGAAGTGTGGG+TGG | + | chr4_2:2562803-2562822 | Msa0583830:intron | 45.0% |
| ! | TTGGCTGCATTGGGTCTTAT+TGG | + | chr4_2:2563718-2563737 | Msa0583830:intron | 45.0% |
| !! | TATCTATGGAGGTATCACGC+TGG | + | chr4_2:2563814-2563833 | Msa0583830:CDS | 45.0% |
| !! | GGCCTTATTAGCACTTCAAG+AGG | + | chr4_2:2563845-2563864 | Msa0583830:CDS | 45.0% |
| ACGAATTCAACAGGCATCCT+TGG | + | chr4_2:2563966-2563985 | Msa0583830:intron | 45.0% | |
| CAGGGTAAACCAATGGAAGA+AGG | + | chr4_2:2564007-2564026 | Msa0583830:intron | 45.0% | |
| ACTCCACTTCCTTCTTCCAT+TGG | - | chr4_2:2564019-2564038 | None:intergenic | 45.0% | |
| GAAGGAAGTGGAGTAAGTTG+TGG | + | chr4_2:2564025-2564044 | Msa0583830:intron | 45.0% | |
| AGGAAGTGGAGTAAGTTGTG+GGG | + | chr4_2:2564027-2564046 | Msa0583830:intron | 45.0% | |
| ! | GACTCGGAGTGTCTTGTTAA+AGG | + | chr4_2:2564680-2564699 | Msa0583830:intron | 45.0% |
| ! | TCGTGTTTGGGGTTGTTTGT+GGG | + | chr4_2:2564707-2564726 | Msa0583830:intron | 45.0% |
| AGTGCATGCTCACTTGTACA+AGG | + | chr4_2:2564789-2564808 | Msa0583830:intron | 45.0% | |
| TCATAGGAGGAATCCCAATC+TGG | + | chr4_2:2564932-2564951 | Msa0583830:intron | 45.0% | |
| CCACGATATCCTACCAGATT+GGG | - | chr4_2:2564948-2564967 | None:intergenic | 45.0% | |
| CCAATCTGGTAGGATATCGT+GGG | + | chr4_2:2564946-2564965 | Msa0583830:intron | 45.0% | |
| TAGAGAAGGGAAAGGGGAAA+GGG | - | chr4_2:2565224-2565243 | None:intergenic | 45.0% | |
| ATAGAGAAGGGAAAGGGGAA+AGG | - | chr4_2:2565225-2565244 | None:intergenic | 45.0% | |
| GAACTTAACAACTGCGACTG+TGG | - | chr4_2:2565402-2565421 | None:intergenic | 45.0% | |
| GAAAATCTTGTAGGCAGCTG+AGG | + | chr4_2:2565710-2565729 | Msa0583830:intron | 45.0% | |
| ! | GCATCTGGTTCGTATGTTTG+AGG | + | chr4_2:2565734-2565753 | Msa0583830:CDS | 45.0% |
| GGTGACCGTTCAATCAAGAT+TGG | + | chr4_2:2566265-2566284 | Msa0583830:intron | 45.0% | |
| GAGCTTGAATCTAAACCGTC+TGG | + | chr4_2:2566338-2566357 | Msa0583830:intron | 45.0% | |
| TCTAAACCGTCTGGTATGTG+TGG | + | chr4_2:2566347-2566366 | Msa0583830:intron | 45.0% | |
| TCCTATTCCTGTAAGCCTAC+GGG | - | chr4_2:2566825-2566844 | None:intergenic | 45.0% | |
| TTGGGGTATACAAGCAGCAA+TGG | - | chr4_2:2566917-2566936 | None:intergenic | 45.0% | |
| !! | TATGGAGGTATCACGCTGGA+CGG | + | chr4_2:2563818-2563837 | Msa0583830:CDS | 50.0% |
| ! | CCTCCTTTTGGCAACTTAGC+TGG | - | chr4_2:2564099-2564118 | None:intergenic | 50.0% |
| CCAGCTAAGTTGCCAAAAGG+AGG | + | chr4_2:2564096-2564115 | Msa0583830:intron | 50.0% | |
| GTCTGAAAGCTTCTTCCTCG+CGG | + | chr4_2:2564487-2564506 | Msa0583830:intron | 50.0% | |
| TCTGAAAGCTTCTTCCTCGC+GGG | + | chr4_2:2564488-2564507 | Msa0583830:intron | 50.0% | |
| ACTGGCATCTACAGTGAGAC+TGG | - | chr4_2:2564617-2564636 | None:intergenic | 50.0% | |
| ! | CTCGTGTTTGGGGTTGTTTG+TGG | + | chr4_2:2564706-2564725 | Msa0583830:intron | 50.0% |
| AGGAGGAATCCCAATCTGGT+AGG | + | chr4_2:2564936-2564955 | Msa0583830:intron | 50.0% | |
| CCCAATCTGGTAGGATATCG+TGG | + | chr4_2:2564945-2564964 | Msa0583830:intron | 50.0% | |
| CCCACGATATCCTACCAGAT+TGG | - | chr4_2:2564949-2564968 | None:intergenic | 50.0% | |
| GGGAAAGGGGAACTGGTTAT+GGG | - | chr4_2:2565210-2565229 | None:intergenic | 50.0% | |
| AGAGAAGGGAAAGGGGAAAG+GGG | - | chr4_2:2565223-2565242 | None:intergenic | 50.0% | |
| ! | CTGGTTCGTATGTTTGAGGG+TGG | + | chr4_2:2565738-2565757 | Msa0583830:CDS | 50.0% |
| ATCCAGCTCTTTGCAGTCTC+TGG | - | chr4_2:2566375-2566394 | None:intergenic | 50.0% | |
| !! | AGGATCTTGAGTTGACCCGT+AGG | + | chr4_2:2566807-2566826 | Msa0583830:CDS | 50.0% |
| ACCCGTAGGCTTACAGGAAT+AGG | + | chr4_2:2566821-2566840 | Msa0583830:CDS | 50.0% | |
| GTCAAGCACATTCCACGTCC+TGG | + | chr4_2:2561747-2561766 | Msa0583830:CDS | 55.0% | |
| CTACGACGAGTGCGTTTACC+AGG | - | chr4_2:2561768-2561787 | None:intergenic | 55.0% | |
| GGGGAAAGGGGAACTGGTTA+TGG | - | chr4_2:2565211-2565230 | None:intergenic | 55.0% | |
| TTCGGATTCCCTGCAGTCAC+AGG | + | chr4_2:2566214-2566233 | Msa0583830:intron | 55.0% | |
| TCGGATTCCCTGCAGTCACA+GGG | + | chr4_2:2566215-2566234 | Msa0583830:intron | 55.0% | |
| !! | CTGGTGCCACACATACCAGA+CGG | - | chr4_2:2566356-2566375 | None:intergenic | 55.0% |
| CACCAGAGACTGCAAAGAGC+TGG | + | chr4_2:2566370-2566389 | Msa0583830:intron | 55.0% | |
| CGAGTTGCAGGAGATGTGCT+TGG | + | chr4_2:2566419-2566438 | Msa0583830:intron | 55.0% | |
| GAGTTGACCCGTAGGCTTAC+AGG | + | chr4_2:2566815-2566834 | Msa0583830:CDS | 55.0% | |
| CGAGTGCGTTTACCAGGACG+TGG | - | chr4_2:2561762-2561781 | None:intergenic | 60.0% | |
| TCGCGAAGCGCAACTGTTCC+TGG | - | chr4_2:2561926-2561945 | None:intergenic | 60.0% | |
| GTGTCTGGTGTCTGTGTCCG+TGG | - | chr4_2:2562099-2562118 | None:intergenic | 60.0% | |
| GGGAAAGGGGAAAGGGGAAC+TGG | - | chr4_2:2565217-2565236 | None:intergenic | 60.0% | |
| !! | GTAGGCAGCTGAGGAGCATC+TGG | + | chr4_2:2565719-2565738 | Msa0583830:intron | 60.0% |
| GGGAGATCCCTGTGACTGCA+GGG | - | chr4_2:2566225-2566244 | None:intergenic | 60.0% | |
| TGGGAGATCCCTGTGACTGC+AGG | - | chr4_2:2566226-2566245 | None:intergenic | 60.0% | |
| GGTATCACGCTGGACGGCTG+AGG | + | chr4_2:2563824-2563843 | Msa0583830:CDS | 65.0% | |
| GTTACGCAGCAAAGCCCGCG+AGG | - | chr4_2:2564505-2564524 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 2561680 | 2567166 | 2561680 | ID=Msa0583830;Name=Msa0583830 |
| chr4_2 | mRNA | 2561680 | 2567166 | 2561680 | ID=Msa0583830-mRNA-1;Parent=Msa0583830;Name=Msa0583830-mRNA-1;_AED=0.07;_eAED=0.07;_QI=58|1|1|1|0.75|1|5|310|130 |
| chr4_2 | exon | 2561680 | 2561801 | 2561680 | ID=Msa0583830-mRNA-1:exon:705;Parent=Msa0583830-mRNA-1 |
| chr4_2 | exon | 2561885 | 2562006 | 2561885 | ID=Msa0583830-mRNA-1:exon:706;Parent=Msa0583830-mRNA-1 |
| chr4_2 | exon | 2563792 | 2563866 | 2563792 | ID=Msa0583830-mRNA-1:exon:707;Parent=Msa0583830-mRNA-1 |
| chr4_2 | exon | 2565723 | 2565798 | 2565723 | ID=Msa0583830-mRNA-1:exon:708;Parent=Msa0583830-mRNA-1 |
| chr4_2 | exon | 2566801 | 2567166 | 2566801 | ID=Msa0583830-mRNA-1:exon:709;Parent=Msa0583830-mRNA-1 |
| chr4_2 | five_prime_UTR | 2561680 | 2561737 | 2561680 | ID=Msa0583830-mRNA-1:five_prime_utr;Parent=Msa0583830-mRNA-1 |
| chr4_2 | CDS | 2561738 | 2561801 | 2561738 | ID=Msa0583830-mRNA-1:cds;Parent=Msa0583830-mRNA-1 |
| chr4_2 | CDS | 2561885 | 2562006 | 2561885 | ID=Msa0583830-mRNA-1:cds;Parent=Msa0583830-mRNA-1 |
| chr4_2 | CDS | 2563792 | 2563866 | 2563792 | ID=Msa0583830-mRNA-1:cds;Parent=Msa0583830-mRNA-1 |
| chr4_2 | CDS | 2565723 | 2565798 | 2565723 | ID=Msa0583830-mRNA-1:cds;Parent=Msa0583830-mRNA-1 |
| chr4_2 | CDS | 2566801 | 2566856 | 2566801 | ID=Msa0583830-mRNA-1:cds;Parent=Msa0583830-mRNA-1 |
| chr4_2 | three_prime_UTR | 2566857 | 2567166 | 2566857 | ID=Msa0583830-mRNA-1:three_prime_utr;Parent=Msa0583830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
