Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1177320 | XP_013444661.1 | 100.000 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 6.66e-89 | 264 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1177320 | sp|Q6T367|CENH3_ORYSJ | 61.468 | 109 | 42 | 0 | 17 | 125 | 52 | 160 | 2.19e-42 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa1177320 | 0.821985 | 3.017697e-53 | -8.615850e-47 |
| Msa0018160 | Msa1177320 | 0.801112 | 1.049739e-48 | -8.615850e-47 |
| Msa0021500 | Msa1177320 | 0.822623 | 2.145857e-53 | -8.615850e-47 |
| Msa0028420 | Msa1177320 | 0.868770 | 5.099436e-66 | -8.615850e-47 |
| Msa0030370 | Msa1177320 | 0.815010 | 1.150957e-51 | -8.615850e-47 |
| Msa0032430 | Msa1177320 | 0.805987 | 1.023679e-49 | -8.615850e-47 |
| Msa0032920 | Msa1177320 | -0.802930 | 4.440809e-49 | -8.615850e-47 |
| Msa0032960 | Msa1177320 | -0.807688 | 4.472428e-50 | -8.615850e-47 |
| Msa0042610 | Msa1177320 | 0.836561 | 8.709026e-57 | -8.615850e-47 |
| Msa0054690 | Msa1177320 | 0.821031 | 5.011621e-53 | -8.615850e-47 |
| Msa0074240 | Msa1177320 | 0.819591 | 1.071795e-52 | -8.615850e-47 |
| Msa0081520 | Msa1177320 | 0.818895 | 1.543659e-52 | -8.615850e-47 |
| Msa0089630 | Msa1177320 | 0.812901 | 3.356875e-51 | -8.615850e-47 |
| Msa0092790 | Msa1177320 | 0.851242 | 1.008457e-60 | -8.615850e-47 |
| Msa0097260 | Msa1177320 | 0.801414 | 9.105842e-49 | -8.615850e-47 |
| Msa0626450 | Msa1177320 | 0.813658 | 2.289943e-51 | -8.615850e-47 |
| Msa0626490 | Msa1177320 | 0.810731 | 9.962498e-51 | -8.615850e-47 |
| Msa0658640 | Msa1177320 | 0.808743 | 2.665618e-50 | -8.615850e-47 |
| Msa0658880 | Msa1177320 | 0.810356 | 1.200620e-50 | -8.615850e-47 |
| Msa0661150 | Msa1177320 | 0.823078 | 1.680553e-53 | -8.615850e-47 |
| Msa0664600 | Msa1177320 | 0.810209 | 1.291699e-50 | -8.615850e-47 |
| Msa0704410 | Msa1177320 | 0.819527 | 1.108261e-52 | -8.615850e-47 |
| Msa0735780 | Msa1177320 | 0.810218 | 1.285527e-50 | -8.615850e-47 |
| Msa0761670 | Msa1177320 | 0.805833 | 1.102652e-49 | -8.615850e-47 |
| Msa0795870 | Msa1177320 | 0.848356 | 6.457738e-60 | -8.615850e-47 |
| Msa0833650 | Msa1177320 | 0.844427 | 7.611378e-59 | -8.615850e-47 |
| Msa0124060 | Msa1177320 | 0.863613 | 2.196793e-64 | -8.615850e-47 |
| Msa0124280 | Msa1177320 | 0.813519 | 2.456968e-51 | -8.615850e-47 |
| Msa0125550 | Msa1177320 | 0.810776 | 9.742427e-51 | -8.615850e-47 |
| Msa0146040 | Msa1177320 | 0.802767 | 4.799208e-49 | -8.615850e-47 |
| Msa0168500 | Msa1177320 | 0.864943 | 8.449268e-65 | -8.615850e-47 |
| Msa0172070 | Msa1177320 | 0.801050 | 1.081276e-48 | -8.615850e-47 |
| Msa0173730 | Msa1177320 | 0.811513 | 6.743328e-51 | -8.615850e-47 |
| Msa0173810 | Msa1177320 | 0.808634 | 2.812356e-50 | -8.615850e-47 |
| Msa0178560 | Msa1177320 | 0.810025 | 1.415311e-50 | -8.615850e-47 |
| Msa0182190 | Msa1177320 | 0.818771 | 1.647151e-52 | -8.615850e-47 |
| Msa0182240 | Msa1177320 | 0.820947 | 5.240014e-53 | -8.615850e-47 |
| Msa0190570 | Msa1177320 | 0.802130 | 6.491432e-49 | -8.615850e-47 |
| Msa0221000 | Msa1177320 | 0.802533 | 5.362998e-49 | -8.615850e-47 |
| Msa0223080 | Msa1177320 | 0.839612 | 1.427736e-57 | -8.615850e-47 |
| Msa0225100 | Msa1177320 | 0.807677 | 4.498201e-50 | -8.615850e-47 |
| Msa0225860 | Msa1177320 | 0.823278 | 1.509213e-53 | -8.615850e-47 |
| Msa0230740 | Msa1177320 | 0.806670 | 7.348397e-50 | -8.615850e-47 |
| Msa0371030 | Msa1177320 | 0.929635 | 5.236072e-93 | -8.615850e-47 |
| Msa0378720 | Msa1177320 | 0.826114 | 3.239254e-54 | -8.615850e-47 |
| Msa0467490 | Msa1177320 | 0.811060 | 8.456039e-51 | -8.615850e-47 |
| Msa0474730 | Msa1177320 | 0.827426 | 1.574721e-54 | -8.615850e-47 |
| Msa1019430 | Msa1177320 | 0.824272 | 8.829422e-54 | -8.615850e-47 |
| Msa1019470 | Msa1177320 | 0.827673 | 1.374096e-54 | -8.615850e-47 |
| Msa1020670 | Msa1177320 | 0.800938 | 1.139388e-48 | -8.615850e-47 |
| Msa1045140 | Msa1177320 | 0.824202 | 9.173900e-54 | -8.615850e-47 |
| Msa1078170 | Msa1177320 | 0.815484 | 9.028848e-52 | -8.615850e-47 |
| Msa1103990 | Msa1177320 | 0.834846 | 2.366859e-56 | -8.615850e-47 |
| Msa1105780 | Msa1177320 | 0.807638 | 4.584617e-50 | -8.615850e-47 |
| Msa0266180 | Msa1177320 | 0.808099 | 3.657924e-50 | -8.615850e-47 |
| Msa0277180 | Msa1177320 | 0.822299 | 2.551302e-53 | -8.615850e-47 |
| Msa0287740 | Msa1177320 | 0.818220 | 2.195858e-52 | -8.615850e-47 |
| Msa0292400 | Msa1177320 | 0.811036 | 8.558685e-51 | -8.615850e-47 |
| Msa0298470 | Msa1177320 | 0.831257 | 1.849934e-55 | -8.615850e-47 |
| Msa0300270 | Msa1177320 | 0.815886 | 7.347267e-52 | -8.615850e-47 |
| Msa0302160 | Msa1177320 | 0.833515 | 5.103223e-56 | -8.615850e-47 |
| Msa0316810 | Msa1177320 | 0.812773 | 3.581571e-51 | -8.615850e-47 |
| Msa0337700 | Msa1177320 | 0.814792 | 1.286499e-51 | -8.615850e-47 |
| Msa0339490 | Msa1177320 | 0.833228 | 6.015576e-56 | -8.615850e-47 |
| Msa0339500 | Msa1177320 | 0.843999 | 9.917598e-59 | -8.615850e-47 |
| Msa0340500 | Msa1177320 | 0.821974 | 3.035200e-53 | -8.615850e-47 |
| Msa1116220 | Msa1177320 | 0.803540 | 3.320436e-49 | -8.615850e-47 |
| Msa1123380 | Msa1177320 | 0.823999 | 1.023324e-53 | -8.615850e-47 |
| Msa1132840 | Msa1177320 | 0.847748 | 9.502557e-60 | -8.615850e-47 |
| Msa1177320 | Msa1186020 | 0.807035 | 6.153014e-50 | -8.615850e-47 |
| Msa1177320 | Msa1206460 | 0.808086 | 3.680281e-50 | -8.615850e-47 |
| Msa1177320 | Msa1209460 | 0.801663 | 8.098446e-49 | -8.615850e-47 |
| Msa1177320 | Msa1224930 | 0.809975 | 1.450209e-50 | -8.615850e-47 |
| Msa1177320 | Msa1226520 | 0.812174 | 4.841129e-51 | -8.615850e-47 |
| Msa1177320 | Msa1293870 | 0.818211 | 2.205882e-52 | -8.615850e-47 |
| Msa1177320 | Msa1297230 | 0.806475 | 8.079841e-50 | -8.615850e-47 |
| Msa1177320 | Msa1298220 | 0.811563 | 6.577344e-51 | -8.615850e-47 |
| Msa1177320 | Msa1321340 | 0.802016 | 6.853314e-49 | -8.615850e-47 |
| Msa1177320 | Msa1333080 | 0.801006 | 1.103422e-48 | -8.615850e-47 |
| Msa1177320 | Msa1343170 | 0.800685 | 1.283659e-48 | -8.615850e-47 |
| Msa1177320 | Msa1343180 | 0.816543 | 5.238450e-52 | -8.615850e-47 |
| Msa1177320 | Msa1343430 | 0.815818 | 7.605727e-52 | -8.615850e-47 |
| Msa1177320 | Msa1359690 | 0.807252 | 5.534448e-50 | -8.615850e-47 |
| Msa1177320 | Msa1372230 | 0.817925 | 2.560802e-52 | -8.615850e-47 |
| Msa1177320 | Msa1373100 | 0.829844 | 4.099524e-55 | -8.615850e-47 |
| Msa1177320 | Msa1390440 | 0.818445 | 1.953003e-52 | -8.615850e-47 |
| Msa1177320 | Msa1396030 | 0.823168 | 1.601750e-53 | -8.615850e-47 |
| Msa1177320 | Msa1422950 | 0.829683 | 4.487978e-55 | -8.615850e-47 |
| Msa1177320 | Msa1440880 | 0.826192 | 3.104471e-54 | -8.615850e-47 |
| Msa1177320 | Msa1440960 | 0.803237 | 3.836456e-49 | -8.615850e-47 |
| Msa1177320 | Msa1446810 | 0.827361 | 1.632239e-54 | -8.615850e-47 |
| Msa1177320 | Msa1446820 | 0.829913 | 3.945125e-55 | -8.615850e-47 |
| Msa1177320 | Msa1451160 | 0.830017 | 3.720925e-55 | -8.615850e-47 |
| Msa1177320 | Msa1465440 | 0.811733 | 6.041342e-51 | -8.615850e-47 |
| Msa1177320 | Msa1466920 | 0.836202 | 1.074151e-56 | -8.615850e-47 |
| Msa0530780 | Msa1177320 | 0.814503 | 1.490101e-51 | -8.615850e-47 |
| Msa0532070 | Msa1177320 | 0.806640 | 7.457280e-50 | -8.615850e-47 |
| Msa0569200 | Msa1177320 | 0.841356 | 4.993599e-58 | -8.615850e-47 |
| Msa0580370 | Msa1177320 | 0.846706 | 1.834915e-59 | -8.615850e-47 |
| Msa0583830 | Msa1177320 | 0.954597 | 2.068399e-112 | -8.615850e-47 |
| Msa0590830 | Msa1177320 | 0.819737 | 9.924351e-53 | -8.615850e-47 |
| Msa0597790 | Msa1177320 | 0.803482 | 3.413658e-49 | -8.615850e-47 |
| Msa0861870 | Msa1177320 | 0.804213 | 2.406416e-49 | -8.615850e-47 |
| Msa0873730 | Msa1177320 | 0.804711 | 1.894593e-49 | -8.615850e-47 |
| Msa0902510 | Msa1177320 | 0.812949 | 3.277126e-51 | -8.615850e-47 |
| Msa0944700 | Msa1177320 | 0.811626 | 6.371633e-51 | -8.615850e-47 |
| Msa0945110 | Msa1177320 | 0.801507 | 8.717253e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1177320 | MtrunA17_Chr8g0347231 | 100.000 | 130 | 0 | 0 | 1 | 130 | 1 | 130 | 6.13e-93 | 264 |
| Msa1177320 | MtrunA17_Chr8g0388121 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 2.40e-32 | 111 |
| Msa1177320 | MtrunA17_Chr4g0054161 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 7.79e-32 | 109 |
| Msa1177320 | MtrunA17_Chr8g0363741 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 7.79e-32 | 109 |
| Msa1177320 | MtrunA17_Chr1g0156021 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 7.79e-32 | 109 |
| Msa1177320 | MtrunA17_Chr4g0054151 | 50.000 | 118 | 58 | 1 | 8 | 125 | 20 | 136 | 7.94e-32 | 109 |
| Msa1177320 | MtrunA17_Chr5g0410931 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.40e-30 | 106 |
| Msa1177320 | MtrunA17_Chr5g0410951 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.40e-30 | 106 |
| Msa1177320 | MtrunA17_Chr8g0383851 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.40e-30 | 106 |
| Msa1177320 | MtrunA17_Chr8g0383781 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.40e-30 | 106 |
| Msa1177320 | MtrunA17_Chr8g0390361 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.40e-30 | 106 |
| Msa1177320 | MtrunA17_Chr2g0295191 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.40e-30 | 106 |
| Msa1177320 | MtrunA17_Chr7g0237661 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.40e-30 | 106 |
| Msa1177320 | MtrunA17_Chr4g0033041 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.40e-30 | 106 |
| Msa1177320 | MtrunA17_Chr7g0218971 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.40e-30 | 106 |
| Msa1177320 | MtrunA17_Chr4g0046301 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.40e-30 | 106 |
| Msa1177320 | MtrunA17_Chr8g0364801 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.40e-30 | 106 |
| Msa1177320 | MtrunA17_Chr2g0319141 | 48.305 | 118 | 60 | 1 | 8 | 125 | 17 | 133 | 2.77e-30 | 105 |
| Msa1177320 | MtrunA17_Chr2g0319151 | 48.305 | 118 | 60 | 1 | 8 | 125 | 17 | 133 | 2.77e-30 | 105 |
| Msa1177320 | MtrunA17_Chr2g0319131 | 53.922 | 102 | 46 | 1 | 24 | 125 | 43 | 143 | 2.00e-29 | 103 |
| Msa1177320 | MtrunA17_Chr2g0319121 | 55.102 | 98 | 44 | 0 | 28 | 125 | 36 | 133 | 4.80e-29 | 102 |
| Msa1177320 | MtrunA17_Chr7g0222991 | 44.898 | 98 | 53 | 1 | 28 | 125 | 45 | 141 | 1.74e-23 | 89.0 |
| Msa1177320 | MtrunA17_Chr7g0218961 | 47.273 | 110 | 54 | 2 | 14 | 123 | 3 | 108 | 1.77e-23 | 87.8 |
| Msa1177320 | MtrunA17_Chr7g0223001 | 38.298 | 94 | 56 | 1 | 34 | 125 | 52 | 145 | 8.43e-19 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1177320 | AT1G01370.2 | 63.725 | 102 | 36 | 1 | 27 | 127 | 74 | 175 | 5.65e-41 | 134 |
| Msa1177320 | AT1G01370.1 | 63.725 | 102 | 36 | 1 | 27 | 127 | 74 | 175 | 5.65e-41 | 134 |
| Msa1177320 | AT1G01370.4 | 63.725 | 102 | 36 | 1 | 27 | 127 | 74 | 175 | 5.65e-41 | 134 |
| Msa1177320 | AT1G01370.3 | 63.725 | 102 | 36 | 1 | 27 | 127 | 74 | 175 | 5.65e-41 | 134 |
| Msa1177320 | AT4G40030.3 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 1.07e-31 | 109 |
| Msa1177320 | AT4G40030.1 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 1.07e-31 | 109 |
| Msa1177320 | AT4G40030.4 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 1.07e-31 | 109 |
| Msa1177320 | AT5G10980.1 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 1.07e-31 | 109 |
| Msa1177320 | AT4G40040.2 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 1.07e-31 | 109 |
| Msa1177320 | AT4G40040.3 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 1.07e-31 | 109 |
| Msa1177320 | AT4G40040.1 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 1.07e-31 | 109 |
| Msa1177320 | AT1G19890.1 | 55.102 | 98 | 43 | 1 | 28 | 125 | 38 | 134 | 1.16e-31 | 109 |
| Msa1177320 | AT4G40030.2 | 50.000 | 118 | 58 | 1 | 8 | 125 | 45 | 161 | 1.69e-31 | 110 |
| Msa1177320 | AT1G75600.1 | 50.000 | 118 | 58 | 1 | 8 | 125 | 17 | 133 | 3.34e-31 | 108 |
| Msa1177320 | AT1G09200.1 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.44e-30 | 107 |
| Msa1177320 | AT5G65360.1 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.44e-30 | 107 |
| Msa1177320 | AT5G10390.1 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.44e-30 | 107 |
| Msa1177320 | AT5G10400.1 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.44e-30 | 107 |
| Msa1177320 | AT3G27360.1 | 47.015 | 134 | 61 | 3 | 1 | 125 | 1 | 133 | 1.44e-30 | 107 |
| Msa1177320 | AT1G13370.1 | 55.208 | 96 | 42 | 1 | 28 | 123 | 37 | 131 | 3.30e-29 | 103 |
| Msa1177320 | AT5G65350.1 | 52.041 | 98 | 46 | 1 | 28 | 125 | 37 | 133 | 9.86e-29 | 102 |
| Msa1177320 | AT5G12910.1 | 54.082 | 98 | 44 | 1 | 28 | 125 | 32 | 128 | 2.79e-28 | 100 |
Find 39 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAATTTCAAATTAAAATT+AGG | 0.184055 | 8_1:+9677837 | Msa1177320:three_prime_UTR |
| TTTGGTTGTCTCAGTGAAAA+AGG | 0.239991 | 8_1:+9677692 | Msa1177320:intron |
| GAGTTGACCCGTAGGCTTAC+AGG | 0.284958 | 8_1:+9677720 | Msa1177320:CDS |
| TGAACCATCATTGTAGAAAA+AGG | 0.287523 | 8_1:+9677922 | Msa1177320:three_prime_UTR |
| TACCTCTTGAAGTGCTAATA+AGG | 0.302455 | 8_1:-9674755 | None:intergenic |
| TCGCGAAGCGCAACTGTTCC+TGG | 0.319244 | 8_1:-9672825 | None:intergenic |
| TCAAATTAAAATTAGGTACT+AGG | 0.337027 | 8_1:+9677844 | Msa1177320:three_prime_UTR |
| GATTACAAACCAACTATCTA+TGG | 0.360641 | 8_1:+9674708 | Msa1177320:CDS |
| GTAGGCAGCTGAGGAGCATC+TGG | 0.392268 | 8_1:+9676626 | Msa1177320:intron |
| TAACTTATTTAAATTGTAGC+AGG | 0.420714 | 8_1:+9677978 | Msa1177320:three_prime_UTR |
| CTGAGGAAAAGAAGAAAAGA+AGG | 0.420759 | 8_1:+9672796 | Msa1177320:CDS |
| ATCTGAACTTCGCGGTTCAA+TGG | 0.441543 | 8_1:+9672621 | Msa1177320:exon |
| CGAGATTCGTAAATTTCAAA+AGG | 0.441799 | 8_1:+9672845 | Msa1177320:CDS |
| GTGATACCTCCATAGATAGT+TGG | 0.459811 | 8_1:-9674717 | None:intergenic |
| ACCCGTAGGCTTACAGGAAT+AGG | 0.465693 | 8_1:+9677726 | Msa1177320:CDS |
| ATTCATGTATTTACTTGTTG+TGG | 0.477104 | 8_1:+9678023 | Msa1177320:three_prime_UTR |
| CATCTGGTTCGTATGTTTGA+GGG | 0.478828 | 8_1:+9676642 | Msa1177320:CDS |
| GCATCTGGTTCGTATGTTTG+AGG | 0.487530 | 8_1:+9676641 | Msa1177320:CDS |
| ATCCTATTCCTGTAAGCCTA+CGG | 0.499010 | 8_1:-9677728 | None:intergenic |
| GGTATCACGCTGGACGGCTG+AGG | 0.513698 | 8_1:+9674732 | Msa1177320:CDS |
| CTACGACGAGTGCGTTTACC+AGG | 0.516556 | 8_1:-9672667 | None:intergenic |
| GTCAAGCACATTCCACGTCC+TGG | 0.519981 | 8_1:+9672649 | Msa1177320:CDS |
| AAACTTACGCATCTAACAAA+CGG | 0.525872 | 8_1:-9672894 | None:intergenic |
| TCCTATTCCTGTAAGCCTAC+GGG | 0.528638 | 8_1:-9677727 | None:intergenic |
| AAGTCAAAATCTGAACTTCG+CGG | 0.537494 | 8_1:+9672613 | Msa1177320:five_prime_UTR |
| CGTCGTAGCAGTAGTAGTAA+TGG | 0.540770 | 8_1:+9672682 | Msa1177320:CDS |
| TATATAGCAACAATCACTAC+AGG | 0.561553 | 8_1:-9677772 | None:intergenic |
| AACTTATTTAAATTGTAGCA+GGG | 0.563888 | 8_1:+9677979 | Msa1177320:three_prime_UTR |
| GAAAATCTTGTAGGCAGCTG+AGG | 0.568090 | 8_1:+9676617 | Msa1177320:intron |
| CTGGTTCGTATGTTTGAGGG+TGG | 0.577944 | 8_1:+9676645 | Msa1177320:CDS |
| CGAGTGCGTTTACCAGGACG+TGG | 0.589441 | 8_1:-9672661 | None:intergenic |
| TATGGAGGTATCACGCTGGA+CGG | 0.590985 | 8_1:+9674726 | Msa1177320:CDS |
| TTGGGGTATACAAGCAGCAA+TGG | 0.592465 | 8_1:-9677819 | None:intergenic |
| CATCTAACAAACGGAGCACA+AGG | 0.593820 | 8_1:-9672885 | None:intergenic |
| AAGAAAAGAAGGAATAGACC+AGG | 0.594091 | 8_1:+9672807 | Msa1177320:CDS |
| GGCCTTATTAGCACTTCAAG+AGG | 0.637546 | 8_1:+9674753 | Msa1177320:CDS |
| AGGATCTTGAGTTGACCCGT+AGG | 0.666475 | 8_1:+9677712 | Msa1177320:CDS |
| TACAAACCAACTATCTATGG+AGG | 0.667342 | 8_1:+9674711 | Msa1177320:CDS |
| TATCTATGGAGGTATCACGC+TGG | 0.705952 | 8_1:+9674722 | Msa1177320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTATATTTTTTTAGTGTA+CGG | + | chr8_1:9673069-9673088 | Msa1177320:intron | 15.0% |
| !!! | CTTTAAGAGATATAAATAAT+TGG | + | chr8_1:9673243-9673262 | Msa1177320:intron | 15.0% |
| !! | GGTAATAAACTAATAATTTA+AGG | + | chr8_1:9673341-9673360 | Msa1177320:intron | 15.0% |
| !!! | CTTCATCTTAATTTTATATT+TGG | + | chr8_1:9674182-9674201 | Msa1177320:intron | 15.0% |
| !!! | TTTTTAAATTATGAAGAATC+CGG | + | chr8_1:9674829-9674848 | Msa1177320:intron | 15.0% |
| !! | TAAGAATCTATGAAATAAAA+CGG | - | chr8_1:9674855-9674874 | None:intergenic | 15.0% |
| !! | ACTGAAAATAAATAACATAA+AGG | + | chr8_1:9676158-9676177 | Msa1177320:intron | 15.0% |
| !! | CTGAAAATAAATAACATAAA+GGG | + | chr8_1:9676159-9676178 | Msa1177320:intron | 15.0% |
| !! | ATCTTAAATAGCTATTAAAA+AGG | + | chr8_1:9676509-9676528 | Msa1177320:intron | 15.0% |
| !! | AAATTAAATCAACTTACTAA+GGG | - | chr8_1:9676703-9676722 | None:intergenic | 15.0% |
| !! | AAAATTAAATCAACTTACTA+AGG | - | chr8_1:9676704-9676723 | None:intergenic | 15.0% |
| !!! | AATTAAAACCTAAAATGTTT+TGG | - | chr8_1:9677203-9677222 | None:intergenic | 15.0% |
| !!! | CAATTTTTATTAACATTAAC+AGG | + | chr8_1:9677371-9677390 | Msa1177320:intron | 15.0% |
| !!! | CTAATTTTAATTTGAAATTG+GGG | - | chr8_1:9677839-9677858 | None:intergenic | 15.0% |
| !!! | CCTAATTTTAATTTGAAATT+GGG | - | chr8_1:9677840-9677859 | None:intergenic | 15.0% |
| !!! | ACCTAATTTTAATTTGAAAT+TGG | - | chr8_1:9677841-9677860 | None:intergenic | 15.0% |
| !!! | TTTTTAATGTGCTGTTAATT+AGG | + | chr8_1:9672964-9672983 | Msa1177320:intron | 20.0% |
| !! | AAACTCTCTTAAATTATTAC+TGG | - | chr8_1:9673046-9673065 | None:intergenic | 20.0% |
| !!! | AGTAAAATTAATTTTGCATC+TGG | - | chr8_1:9673536-9673555 | None:intergenic | 20.0% |
| !!! | TGACATTTTTTTTATACAGA+TGG | + | chr8_1:9673758-9673777 | Msa1177320:intron | 20.0% |
| !! | AAAGTTCTTATAATTTCATG+TGG | - | chr8_1:9674236-9674255 | None:intergenic | 20.0% |
| !!! | ATATTTCCTTTTTACATAAC+TGG | - | chr8_1:9674306-9674325 | None:intergenic | 20.0% |
| !! | AATTTCAACTTAATACAAAG+AGG | - | chr8_1:9674369-9674388 | None:intergenic | 20.0% |
| !!! | TTTTCCAAGTAATAACTTAT+GGG | - | chr8_1:9674505-9674524 | None:intergenic | 20.0% |
| !!! | ATTTTCCAAGTAATAACTTA+TGG | - | chr8_1:9674506-9674525 | None:intergenic | 20.0% |
| !!! | AAATTAAAGCAAAAAGCATA+GGG | - | chr8_1:9674670-9674689 | None:intergenic | 20.0% |
| !! | ATAATAGAACCATATGAAAA+AGG | - | chr8_1:9674786-9674805 | None:intergenic | 20.0% |
| !! | AGAAAATAAATCAATACCAA+CGG | - | chr8_1:9675454-9675473 | None:intergenic | 20.0% |
| !! | TTTCAGTAATAAATAGAGAA+GGG | - | chr8_1:9676145-9676164 | None:intergenic | 20.0% |
| !!! | TTTTCAGTAATAAATAGAGA+AGG | - | chr8_1:9676146-9676165 | None:intergenic | 20.0% |
| !! | ATCTGTTAGACTTTATATTA+TGG | - | chr8_1:9676206-9676225 | None:intergenic | 20.0% |
| !! | TTATGAATTGTGTATCTTAT+TGG | + | chr8_1:9676358-9676377 | Msa1177320:intron | 20.0% |
| !! | AAATAGCTATTAAAAAGGAA+CGG | + | chr8_1:9676514-9676533 | Msa1177320:intron | 20.0% |
| !! | AAGAAAAATTAACGAAAGAA+GGG | - | chr8_1:9676590-9676609 | None:intergenic | 20.0% |
| !! | AAAGAAAAATTAACGAAAGA+AGG | - | chr8_1:9676591-9676610 | None:intergenic | 20.0% |
| !! | CATTCATCATCAAAATAAAA+AGG | - | chr8_1:9676797-9676816 | None:intergenic | 20.0% |
| !! | AAATGTGATACCAAATTAAA+AGG | - | chr8_1:9677020-9677039 | None:intergenic | 20.0% |
| !! | TTTATCTAGAGGAAAATAAA+TGG | + | chr8_1:9677526-9677545 | Msa1177320:intron | 20.0% |
| !! | CATGAAAATACTATTCATAA+GGG | - | chr8_1:9677644-9677663 | None:intergenic | 20.0% |
| !! | ACATGAAAATACTATTCATA+AGG | - | chr8_1:9677645-9677664 | None:intergenic | 20.0% |
| !! | TCAAATAACAGATGTTAATA+AGG | - | chr8_1:9677669-9677688 | None:intergenic | 20.0% |
| !!! | ACATCTGTTATTTGATATTT+TGG | + | chr8_1:9677674-9677693 | Msa1177320:intron | 20.0% |
| !! | CCCAATTTCAAATTAAAATT+AGG | + | chr8_1:9677837-9677856 | Msa1177320:three_prime_UTR | 20.0% |
| !! | TCAAATTAAAATTAGGTACT+AGG | + | chr8_1:9677844-9677863 | Msa1177320:three_prime_UTR | 20.0% |
| !! | TAACTTATTTAAATTGTAGC+AGG | + | chr8_1:9677978-9677997 | Msa1177320:three_prime_UTR | 20.0% |
| !! | AACTTATTTAAATTGTAGCA+GGG | + | chr8_1:9677979-9677998 | Msa1177320:three_prime_UTR | 20.0% |
| !! | CAAAATTTGTTCTATATCTC+TGG | + | chr8_1:9673575-9673594 | Msa1177320:intron | 25.0% |
| !! | TTTGTAGTTGATATGAACTT+AGG | + | chr8_1:9673794-9673813 | Msa1177320:intron | 25.0% |
| !!! | ATTTTTTTGTGTGACTTGTA+TGG | + | chr8_1:9673891-9673910 | Msa1177320:intron | 25.0% |
| ! | AAATTAATTTCAACTAACGC+GGG | - | chr8_1:9674162-9674181 | None:intergenic | 25.0% |
| ! | GAAATTAATTTCAACTAACG+CGG | - | chr8_1:9674163-9674182 | None:intergenic | 25.0% |
| ! | GTTAGTTACTTATGTTAGTT+TGG | + | chr8_1:9674268-9674287 | Msa1177320:intron | 25.0% |
| ! | TCTAGAAGATAATTTACACT+TGG | + | chr8_1:9674567-9674586 | Msa1177320:intron | 25.0% |
| !! | TGTCATTTCAACAAATCATA+GGG | - | chr8_1:9674593-9674612 | None:intergenic | 25.0% |
| !! | ATGTCATTTCAACAAATCAT+AGG | - | chr8_1:9674594-9674613 | None:intergenic | 25.0% |
| !! | CAAATTAAAGCAAAAAGCAT+AGG | - | chr8_1:9674671-9674690 | None:intergenic | 25.0% |
| !! | TCAGTTTTTCATCTTTTATC+AGG | - | chr8_1:9675034-9675053 | None:intergenic | 25.0% |
| !!! | GAACTTTATTATTGCTGTTT+CGG | + | chr8_1:9675127-9675146 | Msa1177320:intron | 25.0% |
| !! | TTATCATTTTCAATATCCGT+TGG | + | chr8_1:9675435-9675454 | Msa1177320:intron | 25.0% |
| !!! | GATTTATTTTCTCTTTCCTA+TGG | + | chr8_1:9675462-9675481 | Msa1177320:intron | 25.0% |
| ! | AATATAGCCATGTATACAAA+TGG | + | chr8_1:9675488-9675507 | Msa1177320:intron | 25.0% |
| ! | ATATAGCCATGTATACAAAT+GGG | + | chr8_1:9675489-9675508 | Msa1177320:intron | 25.0% |
| !!! | TTAAGATAGCTTGCTATATA+TGG | + | chr8_1:9675557-9675576 | Msa1177320:intron | 25.0% |
| ! | CAAAGATTAGAGAAATGATA+TGG | + | chr8_1:9675756-9675775 | Msa1177320:intron | 25.0% |
| !!! | ATATTGCTTTTAAGATTGGT+GGG | + | chr8_1:9675884-9675903 | Msa1177320:intron | 25.0% |
| !!! | TAGAAACTGACTTTTATTGA+TGG | + | chr8_1:9675940-9675959 | Msa1177320:intron | 25.0% |
| ! | TCTTTGTAATGTCTTTAATC+AGG | - | chr8_1:9675988-9676007 | None:intergenic | 25.0% |
| ! | TAATAAATAGAGAAGGGAAA+GGG | - | chr8_1:9676139-9676158 | None:intergenic | 25.0% |
| ! | GAAAATTGAAAACACAGTTT+AGG | - | chr8_1:9676287-9676306 | None:intergenic | 25.0% |
| !!! | TTTTGAGATTACATTTCGTA+TGG | + | chr8_1:9676557-9676576 | Msa1177320:intron | 25.0% |
| !!! | TTTGTTGTTGAAAATCTTGT+AGG | + | chr8_1:9676608-9676627 | Msa1177320:intron | 25.0% |
| ! | ATCGATGAAAATAAAAACAG+GGG | - | chr8_1:9676736-9676755 | None:intergenic | 25.0% |
| ! | GATCGATGAAAATAAAAACA+GGG | - | chr8_1:9676737-9676756 | None:intergenic | 25.0% |
| ! | TGATCGATGAAAATAAAAAC+AGG | - | chr8_1:9676738-9676757 | None:intergenic | 25.0% |
| ! | AATATGTATACTAGAGAAAG+AGG | + | chr8_1:9676903-9676922 | Msa1177320:intron | 25.0% |
| ! | ATTAAAAGGATGGGAAATAA+TGG | - | chr8_1:9677006-9677025 | None:intergenic | 25.0% |
| !!! | TATTTCCCATCCTTTTAATT+TGG | + | chr8_1:9677007-9677026 | Msa1177320:intron | 25.0% |
| ! | TGATACCAAATTAAAAGGAT+GGG | - | chr8_1:9677015-9677034 | None:intergenic | 25.0% |
| ! | AATTGTCAACACAAGTTTAT+TGG | - | chr8_1:9677468-9677487 | None:intergenic | 25.0% |
| !!! | AATAAAACTCTGTTAGTCTT+CGG | - | chr8_1:9677508-9677527 | None:intergenic | 25.0% |
| !!! | ACAGAGTTTTATTTATCTAG+AGG | + | chr8_1:9677515-9677534 | Msa1177320:intron | 25.0% |
| !! | AAATCCTTTTTCTACAATGA+TGG | - | chr8_1:9677929-9677948 | None:intergenic | 25.0% |
| !! | ATTCATGTATTTACTTGTTG+TGG | + | chr8_1:9678023-9678042 | Msa1177320:three_prime_UTR | 25.0% |
| !!! | AAAACGAGGGTTTTAGAAAT+TGG | - | chr8_1:9672714-9672733 | None:intergenic | 30.0% |
| ATGTGAAATTGTGAAAACGA+GGG | - | chr8_1:9672727-9672746 | None:intergenic | 30.0% | |
| AATGTGAAATTGTGAAAACG+AGG | - | chr8_1:9672728-9672747 | None:intergenic | 30.0% | |
| CGAGATTCGTAAATTTCAAA+AGG | + | chr8_1:9672845-9672864 | Msa1177320:CDS | 30.0% | |
| AAACTTACGCATCTAACAAA+CGG | - | chr8_1:9672897-9672916 | None:intergenic | 30.0% | |
| !! | GCAGTGACAAAAATTGATTT+TGG | + | chr8_1:9673390-9673409 | Msa1177320:intron | 30.0% |
| GCGTTTATTATCGAAATTAC+AGG | + | chr8_1:9673492-9673511 | Msa1177320:intron | 30.0% | |
| ! | TGTATGTTTGGTTTCACTAT+CGG | - | chr8_1:9673624-9673643 | None:intergenic | 30.0% |
| TAACGAAGTTTGATATGTGT+AGG | - | chr8_1:9673669-9673688 | None:intergenic | 30.0% | |
| ! | ATTTCTTCGATTTGAAGTGT+GGG | + | chr8_1:9673708-9673727 | Msa1177320:intron | 30.0% |
| !! | GGAAAAGGAAAACTTGTTTT+TGG | + | chr8_1:9673818-9673837 | Msa1177320:intron | 30.0% |
| !! | ATTTTTCAACACGTACTTGT+TGG | + | chr8_1:9673993-9674012 | Msa1177320:intron | 30.0% |
| !! | TTGCTTTAATTTGTGTCTGT+AGG | + | chr8_1:9674678-9674697 | Msa1177320:intron | 30.0% |
| GATTACAAACCAACTATCTA+TGG | + | chr8_1:9674708-9674727 | Msa1177320:CDS | 30.0% | |
| !! | GGTATGTTACCTTTTTCATA+TGG | + | chr8_1:9674774-9674793 | Msa1177320:intron | 30.0% |
| AATCTATGAAATAAAACGGC+CGG | - | chr8_1:9674851-9674870 | None:intergenic | 30.0% | |
| TAGATTCTTACGAATTCAAC+AGG | + | chr8_1:9674865-9674884 | Msa1177320:intron | 30.0% | |
| GGACATGAAAGTAAATTGTA+TGG | - | chr8_1:9674974-9674993 | None:intergenic | 30.0% | |
| AACTTAGCTGGAAAAGTTAT+GGG | - | chr8_1:9674995-9675014 | None:intergenic | 30.0% | |
| TCACATACAAGGTAAGTTAA+GGG | - | chr8_1:9675254-9675273 | None:intergenic | 30.0% | |
| TTCACATACAAGGTAAGTTA+AGG | - | chr8_1:9675255-9675274 | None:intergenic | 30.0% | |
| AACTTACCTTGTATGTGAAA+AGG | + | chr8_1:9675256-9675275 | Msa1177320:intron | 30.0% | |
| !! | CAATCAAGTTTTATCCAAGA+AGG | + | chr8_1:9675326-9675345 | Msa1177320:intron | 30.0% |
| AAGGAAAATGTTTGAACAGA+TGG | - | chr8_1:9675358-9675377 | None:intergenic | 30.0% | |
| ACAATGAGGAAAAGAAACAA+AGG | - | chr8_1:9675377-9675396 | None:intergenic | 30.0% | |
| ! | ACATGGCTATATTTTTCCAT+AGG | - | chr8_1:9675481-9675500 | None:intergenic | 30.0% |
| AAGATTCCCATTTGTATACA+TGG | - | chr8_1:9675498-9675517 | None:intergenic | 30.0% | |
| !! | ATATATGGTGTCTTTTGACT+CGG | + | chr8_1:9675572-9675591 | Msa1177320:intron | 30.0% |
| ATCCAGATGATCTTAATCAT+AGG | + | chr8_1:9675824-9675843 | Msa1177320:intron | 30.0% | |
| !!! | AGCGATATTGCTTTTAAGAT+TGG | + | chr8_1:9675880-9675899 | Msa1177320:intron | 30.0% |
| !!! | GATATTGCTTTTAAGATTGG+TGG | + | chr8_1:9675883-9675902 | Msa1177320:intron | 30.0% |
| AGAGATAGAATATTGTCACA+AGG | + | chr8_1:9676031-9676050 | Msa1177320:intron | 30.0% | |
| AATAAATAGAGAAGGGAAAG+GGG | - | chr8_1:9676138-9676157 | None:intergenic | 30.0% | |
| GTAATAAATAGAGAAGGGAA+AGG | - | chr8_1:9676140-9676159 | None:intergenic | 30.0% | |
| ACTAGTAAGTGTATAAGTGA+AGG | + | chr8_1:9676420-9676439 | Msa1177320:intron | 30.0% | |
| CTAGTAAGTGTATAAGTGAA+GGG | + | chr8_1:9676421-9676440 | Msa1177320:intron | 30.0% | |
| ACGAAATGTAATCTCAAAAC+AGG | - | chr8_1:9676556-9676575 | None:intergenic | 30.0% | |
| ! | TGATGAATGAAGCTTTATCT+TGG | + | chr8_1:9676808-9676827 | Msa1177320:intron | 30.0% |
| ! | GTATACATATTACTGACTGT+AGG | - | chr8_1:9676894-9676913 | None:intergenic | 30.0% |
| GTGATACCAAATTAAAAGGA+TGG | - | chr8_1:9677016-9677035 | None:intergenic | 30.0% | |
| GAAATGCAGTTTACAGAATT+CGG | + | chr8_1:9677103-9677122 | Msa1177320:intron | 30.0% | |
| AATCTTCCGAATGAATGAAT+GGG | - | chr8_1:9677152-9677171 | None:intergenic | 30.0% | |
| ATGAATAGAGATGGCTAATA+GGG | - | chr8_1:9677305-9677324 | None:intergenic | 30.0% | |
| TATGAATAGAGATGGCTAAT+AGG | - | chr8_1:9677306-9677325 | None:intergenic | 30.0% | |
| !!! | ATTTTTGTGTTGTTTTCCTG+TGG | + | chr8_1:9677422-9677441 | Msa1177320:intron | 30.0% |
| !!! | TTTTTGTGTTGTTTTCCTGT+GGG | + | chr8_1:9677423-9677442 | Msa1177320:intron | 30.0% |
| AGCAGAGACAAAATTATAAC+TGG | - | chr8_1:9677600-9677619 | None:intergenic | 30.0% | |
| TATATAGCAACAATCACTAC+AGG | - | chr8_1:9677775-9677794 | None:intergenic | 30.0% | |
| ! | TGTCAATAGCAATCTTTTGT+AGG | + | chr8_1:9677880-9677899 | Msa1177320:three_prime_UTR | 30.0% |
| TGAACCATCATTGTAGAAAA+AGG | + | chr8_1:9677922-9677941 | Msa1177320:three_prime_UTR | 30.0% | |
| AAGTCAAAATCTGAACTTCG+CGG | + | chr8_1:9672613-9672632 | Msa1177320:five_prime_UTR | 35.0% | |
| !! | TTTTTCAGCAAATGAGTCTG+AGG | + | chr8_1:9672779-9672798 | Msa1177320:intron | 35.0% |
| CTGAGGAAAAGAAGAAAAGA+AGG | + | chr8_1:9672796-9672815 | Msa1177320:CDS | 35.0% | |
| AAGAAAAGAAGGAATAGACC+AGG | + | chr8_1:9672807-9672826 | Msa1177320:CDS | 35.0% | |
| !! | ATTAGGTTTTAGTAGTACCG+CGG | + | chr8_1:9672981-9673000 | Msa1177320:intron | 35.0% |
| GGCTGAAAGTGATTTATGTT+TGG | + | chr8_1:9673411-9673430 | Msa1177320:intron | 35.0% | |
| !! | TTGTTCTATATCTCTGGAAC+TGG | + | chr8_1:9673581-9673600 | Msa1177320:intron | 35.0% |
| !! | TCTGGAACTGGAATCAATTT+TGG | + | chr8_1:9673593-9673612 | Msa1177320:intron | 35.0% |
| GAACACATGTAGTGTATGTT+TGG | - | chr8_1:9673636-9673655 | None:intergenic | 35.0% | |
| CAAACTTCGTTACATTTGAG+AGG | + | chr8_1:9673677-9673696 | Msa1177320:intron | 35.0% | |
| ! | CATTTCTTCGATTTGAAGTG+TGG | + | chr8_1:9673707-9673726 | Msa1177320:intron | 35.0% |
| ! | GTAGTTGATATGAACTTAGG+AGG | + | chr8_1:9673797-9673816 | Msa1177320:intron | 35.0% |
| GATATGAACTTAGGAGGAAA+AGG | + | chr8_1:9673803-9673822 | Msa1177320:intron | 35.0% | |
| ! | GACTTGTATGGCTTTTTATG+TGG | + | chr8_1:9673903-9673922 | Msa1177320:intron | 35.0% |
| TTTGATGAGCATGCTCTATA+TGG | + | chr8_1:9673930-9673949 | Msa1177320:intron | 35.0% | |
| CATGCTCTATATGGAAGTAA+TGG | + | chr8_1:9673939-9673958 | Msa1177320:intron | 35.0% | |
| TTGTCAAATAGCAGCTATAG+TGG | + | chr8_1:9674076-9674095 | Msa1177320:intron | 35.0% | |
| ! | CCTTTTTACATAACTGGTCA+TGG | - | chr8_1:9674300-9674319 | None:intergenic | 35.0% |
| CCATGACCAGTTATGTAAAA+AGG | + | chr8_1:9674297-9674316 | Msa1177320:intron | 35.0% | |
| !! | GCTTTTCAATCAAAAGTGCA+TGG | - | chr8_1:9674481-9674500 | None:intergenic | 35.0% |
| AGCTCCCATAAGTTATTACT+TGG | + | chr8_1:9674498-9674517 | Msa1177320:intron | 35.0% | |
| GATTATTGAAGCTTCTCAAC+AGG | - | chr8_1:9674549-9674568 | None:intergenic | 35.0% | |
| ATGACATCCAGTCAAGTATT+TGG | + | chr8_1:9674607-9674626 | Msa1177320:intron | 35.0% | |
| ATTGGATGTTTGTTCTCACT+TGG | + | chr8_1:9674644-9674663 | Msa1177320:intron | 35.0% | |
| TACAAACCAACTATCTATGG+AGG | + | chr8_1:9674711-9674730 | Msa1177320:CDS | 35.0% | |
| ! | TACCTCTTGAAGTGCTAATA+AGG | - | chr8_1:9674758-9674777 | None:intergenic | 35.0% |
| !!! | CACTTCTGTTTTTGGTTTCA+GGG | + | chr8_1:9674897-9674916 | Msa1177320:intron | 35.0% |
| CAACTTAGCTGGAAAAGTTA+TGG | - | chr8_1:9674996-9675015 | None:intergenic | 35.0% | |
| CTACTGAACAATAGCTAGAT+TGG | + | chr8_1:9675159-9675178 | Msa1177320:intron | 35.0% | |
| ! | TAGATTGGTTAACACAGTTC+TGG | + | chr8_1:9675174-9675193 | Msa1177320:intron | 35.0% |
| ATTACAATCGTGCATTGCAA+CGG | - | chr8_1:9675221-9675240 | None:intergenic | 35.0% | |
| TCTTAACTATCTCATGCAAC+TGG | - | chr8_1:9675543-9675562 | None:intergenic | 35.0% | |
| TGTTAAAGGATACTCGTGTT+TGG | + | chr8_1:9675602-9675621 | Msa1177320:intron | 35.0% | |
| GTTAAAGGATACTCGTGTTT+GGG | + | chr8_1:9675603-9675622 | Msa1177320:intron | 35.0% | |
| TTAAAGGATACTCGTGTTTG+GGG | + | chr8_1:9675604-9675623 | Msa1177320:intron | 35.0% | |
| ! | GGAGTACATTTTATAGCTCA+TGG | + | chr8_1:9675636-9675655 | Msa1177320:intron | 35.0% |
| GTAGCTGAGATGATATTTCA+GGG | + | chr8_1:9675726-9675745 | Msa1177320:intron | 35.0% | |
| AATTGTGATCTTACGACCTT+TGG | + | chr8_1:9675799-9675818 | Msa1177320:intron | 35.0% | |
| CTCCTATGATTAAGATCATC+TGG | - | chr8_1:9675829-9675848 | None:intergenic | 35.0% | |
| CAGATGATCTTAATCATAGG+AGG | + | chr8_1:9675827-9675846 | Msa1177320:intron | 35.0% | |
| AGCTGTCAAATTTCTTGGAT+AGG | - | chr8_1:9676062-9676081 | None:intergenic | 35.0% | |
| ATCCAAGAAATTTGACAGCT+TGG | + | chr8_1:9676062-9676081 | Msa1177320:intron | 35.0% | |
| GGATAGTTATTGAGTGGTTA+TGG | - | chr8_1:9676097-9676116 | None:intergenic | 35.0% | |
| GTTATGGGATAGTTATTGAG+TGG | - | chr8_1:9676103-9676122 | None:intergenic | 35.0% | |
| !! | ATTGTTTTCATCAAAGCGCT+TGG | + | chr8_1:9676962-9676981 | Msa1177320:intron | 35.0% |
| TAATGTACCCTCTCTTTACA+CGG | - | chr8_1:9677069-9677088 | None:intergenic | 35.0% | |
| CAATCTTCCGAATGAATGAA+TGG | - | chr8_1:9677153-9677172 | None:intergenic | 35.0% | |
| CATTCATTCATTCGGAAGAT+TGG | + | chr8_1:9677151-9677170 | Msa1177320:intron | 35.0% | |
| TTTGGTTGTCTCAGTGAAAA+AGG | + | chr8_1:9677692-9677711 | Msa1177320:intron | 35.0% | |
| ATGTCAATTACCATCGTGTC+TGG | - | chr8_1:9673016-9673035 | None:intergenic | 40.0% | |
| GTCATATCTGGTGTTTGTGT+CGG | - | chr8_1:9673312-9673331 | None:intergenic | 40.0% | |
| ACCAGATATGACATCGACAT+TGG | + | chr8_1:9673320-9673339 | Msa1177320:intron | 40.0% | |
| ACCAATGTCGATGTCATATC+TGG | - | chr8_1:9673324-9673343 | None:intergenic | 40.0% | |
| GAAGCTTCTCAACAGGTATA+AGG | - | chr8_1:9674542-9674561 | None:intergenic | 40.0% | |
| AATGCAGCCAAATACTTGAC+TGG | - | chr8_1:9674617-9674636 | None:intergenic | 40.0% | |
| AGTCAAGTATTTGGCTGCAT+TGG | + | chr8_1:9674616-9674635 | Msa1177320:intron | 40.0% | |
| GTCAAGTATTTGGCTGCATT+GGG | + | chr8_1:9674617-9674636 | Msa1177320:intron | 40.0% | |
| GTGATACCTCCATAGATAGT+TGG | - | chr8_1:9674720-9674739 | None:intergenic | 40.0% | |
| ! | ATCCTTGGCACTTCTGTTTT+TGG | + | chr8_1:9674889-9674908 | Msa1177320:intron | 40.0% |
| !! | AACCAAAAACAGAAGTGCCA+AGG | - | chr8_1:9674894-9674913 | None:intergenic | 40.0% |
| !!! | GCACTTCTGTTTTTGGTTTC+AGG | + | chr8_1:9674896-9674915 | Msa1177320:intron | 40.0% |
| TTGGTTTCAGGGTAAACCAA+TGG | + | chr8_1:9674908-9674927 | Msa1177320:intron | 40.0% | |
| AAACCAATGGAAGAAGGAAG+TGG | + | chr8_1:9674921-9674940 | Msa1177320:intron | 40.0% | |
| AAGGAAGTGGAGTAAGTTGT+GGG | + | chr8_1:9674934-9674953 | Msa1177320:intron | 40.0% | |
| TTTCCAGCTAAGTTGCCAAA+AGG | + | chr8_1:9675001-9675020 | Msa1177320:intron | 40.0% | |
| ! | TTATCAGGTAAGCCTCCTTT+TGG | - | chr8_1:9675019-9675038 | None:intergenic | 40.0% |
| ! | GGTTAGTTGATGTTCAGTCA+TGG | + | chr8_1:9675195-9675214 | Msa1177320:intron | 40.0% |
| ! | AGATGGCCTTTTCACATACA+AGG | - | chr8_1:9675265-9675284 | None:intergenic | 40.0% |
| CTCAGACTGTAACTGTAAGA+TGG | - | chr8_1:9675282-9675301 | None:intergenic | 40.0% | |
| ACAGATGGAGAATTCCTTCT+TGG | - | chr8_1:9675343-9675362 | None:intergenic | 40.0% | |
| GAAGAAGCTTTCAGACAATG+AGG | - | chr8_1:9675391-9675410 | None:intergenic | 40.0% | |
| TAGCTCATGGATGTAGTATG+TGG | + | chr8_1:9675649-9675668 | Msa1177320:intron | 40.0% | |
| !! | GGATGTAGTATGTGGATTAG+TGG | + | chr8_1:9675657-9675676 | Msa1177320:intron | 40.0% |
| GCTCACTTGTACAAGGTTAA+CGG | + | chr8_1:9675704-9675723 | Msa1177320:intron | 40.0% | |
| GGTAGCTGAGATGATATTTC+AGG | + | chr8_1:9675725-9675744 | Msa1177320:intron | 40.0% | |
| AGAGAAATGATATGGCTGAC+AGG | + | chr8_1:9675764-9675783 | Msa1177320:intron | 40.0% | |
| AAGATCATCTGGATTGCCAA+AGG | - | chr8_1:9675818-9675837 | None:intergenic | 40.0% | |
| ! | GGATTAGCAAGTGCTTTAGT+AGG | + | chr8_1:9675905-9675924 | Msa1177320:intron | 40.0% |
| GACCAAGCTGTCAAATTTCT+TGG | - | chr8_1:9676067-9676086 | None:intergenic | 40.0% | |
| ! | CATCTGGTTCGTATGTTTGA+GGG | + | chr8_1:9676642-9676661 | Msa1177320:CDS | 40.0% |
| AACTGAAGTAGCGTAGTTGT+TGG | + | chr8_1:9676928-9676947 | Msa1177320:intron | 40.0% | |
| ACTGAAGTAGCGTAGTTGTT+GGG | + | chr8_1:9676929-9676948 | Msa1177320:intron | 40.0% | |
| TTACACGGTAAAGGCAATAG+TGG | - | chr8_1:9677054-9677073 | None:intergenic | 40.0% | |
| GGATCTCCCATTCATTCATT+CGG | + | chr8_1:9677143-9677162 | Msa1177320:intron | 40.0% | |
| ACCGTTCAATCAAGATTGGA+CGG | + | chr8_1:9677176-9677195 | Msa1177320:intron | 40.0% | |
| ACCGTCCAATCTTGATTGAA+CGG | - | chr8_1:9677180-9677199 | None:intergenic | 40.0% | |
| ! | TGGACGGTCCAAAACATTTT+AGG | + | chr8_1:9677192-9677211 | Msa1177320:intron | 40.0% |
| AGACGGTTTAGATTCAAGCT+CGG | - | chr8_1:9677246-9677265 | None:intergenic | 40.0% | |
| GCAACTCGTATGAATAGAGA+TGG | - | chr8_1:9677314-9677333 | None:intergenic | 40.0% | |
| TCTCTATTCATACGAGTTGC+AGG | + | chr8_1:9677314-9677333 | Msa1177320:intron | 40.0% | |
| GGAAAAGTTACGTCACTCTT+AGG | + | chr8_1:9677392-9677411 | Msa1177320:intron | 40.0% | |
| AATATGAAACTAGCTCCCAC+AGG | - | chr8_1:9677441-9677460 | None:intergenic | 40.0% | |
| ATCCTATTCCTGTAAGCCTA+CGG | - | chr8_1:9677731-9677750 | None:intergenic | 40.0% | |
| ATCTGAACTTCGCGGTTCAA+TGG | + | chr8_1:9672621-9672640 | Msa1177320:exon | 45.0% | |
| CGTCGTAGCAGTAGTAGTAA+TGG | + | chr8_1:9672682-9672701 | Msa1177320:CDS | 45.0% | |
| CATCTAACAAACGGAGCACA+AGG | - | chr8_1:9672888-9672907 | None:intergenic | 45.0% | |
| GAGTCAACTACGTGTCTGTT+TGG | + | chr8_1:9673363-9673382 | Msa1177320:intron | 45.0% | |
| ! | TCTTCGATTTGAAGTGTGGG+TGG | + | chr8_1:9673711-9673730 | Msa1177320:intron | 45.0% |
| ! | TTGGCTGCATTGGGTCTTAT+TGG | + | chr8_1:9674626-9674645 | Msa1177320:intron | 45.0% |
| !! | TATCTATGGAGGTATCACGC+TGG | + | chr8_1:9674722-9674741 | Msa1177320:CDS | 45.0% |
| !! | GGCCTTATTAGCACTTCAAG+AGG | + | chr8_1:9674753-9674772 | Msa1177320:CDS | 45.0% |
| ACGAATTCAACAGGCATCCT+TGG | + | chr8_1:9674874-9674893 | Msa1177320:intron | 45.0% | |
| CAGGGTAAACCAATGGAAGA+AGG | + | chr8_1:9674915-9674934 | Msa1177320:intron | 45.0% | |
| ACTCCACTTCCTTCTTCCAT+TGG | - | chr8_1:9674927-9674946 | None:intergenic | 45.0% | |
| GAAGGAAGTGGAGTAAGTTG+TGG | + | chr8_1:9674933-9674952 | Msa1177320:intron | 45.0% | |
| AGGAAGTGGAGTAAGTTGTG+GGG | + | chr8_1:9674935-9674954 | Msa1177320:intron | 45.0% | |
| ! | GACTCGGAGTGTCTTGTTAA+AGG | + | chr8_1:9675588-9675607 | Msa1177320:intron | 45.0% |
| ! | TCGTGTTTGGGGTTGTTTGT+GGG | + | chr8_1:9675615-9675634 | Msa1177320:intron | 45.0% |
| AGTGCATGCTCACTTGTACA+AGG | + | chr8_1:9675697-9675716 | Msa1177320:intron | 45.0% | |
| TCATAGGAGGAATCCCAATC+TGG | + | chr8_1:9675840-9675859 | Msa1177320:intron | 45.0% | |
| CCACGATATCCTACCAGATT+GGG | - | chr8_1:9675856-9675875 | None:intergenic | 45.0% | |
| CCAATCTGGTAGGATATCGT+GGG | + | chr8_1:9675854-9675873 | Msa1177320:intron | 45.0% | |
| TAGAGAAGGGAAAGGGGAAA+GGG | - | chr8_1:9676132-9676151 | None:intergenic | 45.0% | |
| ATAGAGAAGGGAAAGGGGAA+AGG | - | chr8_1:9676133-9676152 | None:intergenic | 45.0% | |
| GAACTTAACAACTGCGACTG+TGG | - | chr8_1:9676309-9676328 | None:intergenic | 45.0% | |
| GAAAATCTTGTAGGCAGCTG+AGG | + | chr8_1:9676617-9676636 | Msa1177320:intron | 45.0% | |
| ! | GCATCTGGTTCGTATGTTTG+AGG | + | chr8_1:9676641-9676660 | Msa1177320:CDS | 45.0% |
| TGCCTTTACCGTGTAAAGAG+AGG | + | chr8_1:9677058-9677077 | Msa1177320:intron | 45.0% | |
| GCCTTTACCGTGTAAAGAGA+GGG | + | chr8_1:9677059-9677078 | Msa1177320:intron | 45.0% | |
| ACCCTCTCTTTACACGGTAA+AGG | - | chr8_1:9677063-9677082 | None:intergenic | 45.0% | |
| GGTGACCGTTCAATCAAGAT+TGG | + | chr8_1:9677172-9677191 | Msa1177320:intron | 45.0% | |
| GAGCTTGAATCTAAACCGTC+TGG | + | chr8_1:9677245-9677264 | Msa1177320:intron | 45.0% | |
| TCTAAACCGTCTGGTATGTG+TGG | + | chr8_1:9677254-9677273 | Msa1177320:intron | 45.0% | |
| TCCTATTCCTGTAAGCCTAC+GGG | - | chr8_1:9677730-9677749 | None:intergenic | 45.0% | |
| TTGGGGTATACAAGCAGCAA+TGG | - | chr8_1:9677822-9677841 | None:intergenic | 45.0% | |
| !! | TATGGAGGTATCACGCTGGA+CGG | + | chr8_1:9674726-9674745 | Msa1177320:CDS | 50.0% |
| ! | CCTCCTTTTGGCAACTTAGC+TGG | - | chr8_1:9675007-9675026 | None:intergenic | 50.0% |
| CCAGCTAAGTTGCCAAAAGG+AGG | + | chr8_1:9675004-9675023 | Msa1177320:intron | 50.0% | |
| GTCTGAAAGCTTCTTCCTCG+CGG | + | chr8_1:9675395-9675414 | Msa1177320:intron | 50.0% | |
| TCTGAAAGCTTCTTCCTCGC+GGG | + | chr8_1:9675396-9675415 | Msa1177320:intron | 50.0% | |
| ACTGGCATCTACAGTGAGAC+TGG | - | chr8_1:9675525-9675544 | None:intergenic | 50.0% | |
| ! | CTCGTGTTTGGGGTTGTTTG+TGG | + | chr8_1:9675614-9675633 | Msa1177320:intron | 50.0% |
| AGGAGGAATCCCAATCTGGT+AGG | + | chr8_1:9675844-9675863 | Msa1177320:intron | 50.0% | |
| CCCAATCTGGTAGGATATCG+TGG | + | chr8_1:9675853-9675872 | Msa1177320:intron | 50.0% | |
| CCCACGATATCCTACCAGAT+TGG | - | chr8_1:9675857-9675876 | None:intergenic | 50.0% | |
| GGGAAAGGGGAACTGGTTAT+GGG | - | chr8_1:9676118-9676137 | None:intergenic | 50.0% | |
| AGAGAAGGGAAAGGGGAAAG+GGG | - | chr8_1:9676131-9676150 | None:intergenic | 50.0% | |
| ! | CTGGTTCGTATGTTTGAGGG+TGG | + | chr8_1:9676645-9676664 | Msa1177320:CDS | 50.0% |
| ATCCAGCTCTTTGCAGTCTC+TGG | - | chr8_1:9677282-9677301 | None:intergenic | 50.0% | |
| !! | AGGATCTTGAGTTGACCCGT+AGG | + | chr8_1:9677712-9677731 | Msa1177320:CDS | 50.0% |
| ACCCGTAGGCTTACAGGAAT+AGG | + | chr8_1:9677726-9677745 | Msa1177320:CDS | 50.0% | |
| GTCAAGCACATTCCACGTCC+TGG | + | chr8_1:9672649-9672668 | Msa1177320:CDS | 55.0% | |
| CTACGACGAGTGCGTTTACC+AGG | - | chr8_1:9672670-9672689 | None:intergenic | 55.0% | |
| GACACAGACACCAGACACGA+TGG | + | chr8_1:9673003-9673022 | Msa1177320:intron | 55.0% | |
| GGGGAAAGGGGAACTGGTTA+TGG | - | chr8_1:9676119-9676138 | None:intergenic | 55.0% | |
| TTCGGATTCCCTGCAGTCAC+AGG | + | chr8_1:9677121-9677140 | Msa1177320:intron | 55.0% | |
| TCGGATTCCCTGCAGTCACA+GGG | + | chr8_1:9677122-9677141 | Msa1177320:intron | 55.0% | |
| !! | CTGGTGCCACACATACCAGA+CGG | - | chr8_1:9677263-9677282 | None:intergenic | 55.0% |
| CACCAGAGACTGCAAAGAGC+TGG | + | chr8_1:9677277-9677296 | Msa1177320:intron | 55.0% | |
| CGAGTTGCAGGAGATGTGCT+TGG | + | chr8_1:9677326-9677345 | Msa1177320:intron | 55.0% | |
| GAGTTGACCCGTAGGCTTAC+AGG | + | chr8_1:9677720-9677739 | Msa1177320:CDS | 55.0% | |
| CGAGTGCGTTTACCAGGACG+TGG | - | chr8_1:9672664-9672683 | None:intergenic | 60.0% | |
| TCGCGAAGCGCAACTGTTCC+TGG | - | chr8_1:9672828-9672847 | None:intergenic | 60.0% | |
| GTGTCTGGTGTCTGTGTCCG+CGG | - | chr8_1:9673001-9673020 | None:intergenic | 60.0% | |
| GGGAAAGGGGAAAGGGGAAC+TGG | - | chr8_1:9676125-9676144 | None:intergenic | 60.0% | |
| !! | GTAGGCAGCTGAGGAGCATC+TGG | + | chr8_1:9676626-9676645 | Msa1177320:intron | 60.0% |
| GGGAGATCCCTGTGACTGCA+GGG | - | chr8_1:9677132-9677151 | None:intergenic | 60.0% | |
| TGGGAGATCCCTGTGACTGC+AGG | - | chr8_1:9677133-9677152 | None:intergenic | 60.0% | |
| GGTATCACGCTGGACGGCTG+AGG | + | chr8_1:9674732-9674751 | Msa1177320:CDS | 65.0% | |
| GTTACGCAGCAAAGCCCGCG+AGG | - | chr8_1:9675413-9675432 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 9672582 | 9678071 | 9672582 | ID=Msa1177320;Name=Msa1177320 |
| chr8_1 | mRNA | 9672582 | 9678071 | 9672582 | ID=Msa1177320-mRNA-1;Parent=Msa1177320;Name=Msa1177320-mRNA-1;_AED=0.08;_eAED=0.08;_QI=58|1|1|1|1|1|5|310|130 |
| chr8_1 | exon | 9672582 | 9672703 | 9672582 | ID=Msa1177320-mRNA-1:exon:3280;Parent=Msa1177320-mRNA-1 |
| chr8_1 | exon | 9672787 | 9672908 | 9672787 | ID=Msa1177320-mRNA-1:exon:3281;Parent=Msa1177320-mRNA-1 |
| chr8_1 | exon | 9674700 | 9674774 | 9674700 | ID=Msa1177320-mRNA-1:exon:3282;Parent=Msa1177320-mRNA-1 |
| chr8_1 | exon | 9676630 | 9676705 | 9676630 | ID=Msa1177320-mRNA-1:exon:3283;Parent=Msa1177320-mRNA-1 |
| chr8_1 | exon | 9677706 | 9678071 | 9677706 | ID=Msa1177320-mRNA-1:exon:3284;Parent=Msa1177320-mRNA-1 |
| chr8_1 | five_prime_UTR | 9672582 | 9672639 | 9672582 | ID=Msa1177320-mRNA-1:five_prime_utr;Parent=Msa1177320-mRNA-1 |
| chr8_1 | CDS | 9672640 | 9672703 | 9672640 | ID=Msa1177320-mRNA-1:cds;Parent=Msa1177320-mRNA-1 |
| chr8_1 | CDS | 9672787 | 9672908 | 9672787 | ID=Msa1177320-mRNA-1:cds;Parent=Msa1177320-mRNA-1 |
| chr8_1 | CDS | 9674700 | 9674774 | 9674700 | ID=Msa1177320-mRNA-1:cds;Parent=Msa1177320-mRNA-1 |
| chr8_1 | CDS | 9676630 | 9676705 | 9676630 | ID=Msa1177320-mRNA-1:cds;Parent=Msa1177320-mRNA-1 |
| chr8_1 | CDS | 9677706 | 9677761 | 9677706 | ID=Msa1177320-mRNA-1:cds;Parent=Msa1177320-mRNA-1 |
| chr8_1 | three_prime_UTR | 9677762 | 9678071 | 9677762 | ID=Msa1177320-mRNA-1:three_prime_utr;Parent=Msa1177320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
