Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1044430 | XP_013454565.1 | 95.599 | 409 | 7 | 2 | 1 | 398 | 1 | 409 | 0.0 | 800 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1044430 | sp|Q9LK31|Y3272_ARATH | 62.010 | 408 | 130 | 4 | 13 | 396 | 20 | 426 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1044430 | A0A072UGM8 | 95.599 | 409 | 7 | 2 | 1 | 398 | 1 | 409 | 0.0 | 800 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006880 | Msa1044430 | 0.804856 | 1.767204e-49 | -8.615850e-47 |
| Msa0033880 | Msa1044430 | 0.823482 | 1.352432e-53 | -8.615850e-47 |
| Msa0055100 | Msa1044430 | 0.814549 | 1.455931e-51 | -8.615850e-47 |
| Msa0101180 | Msa1044430 | 0.810907 | 9.128007e-51 | -8.615850e-47 |
| Msa0115370 | Msa1044430 | 0.825007 | 5.927475e-54 | -8.615850e-47 |
| Msa0606810 | Msa1044430 | 0.813012 | 3.173930e-51 | -8.615850e-47 |
| Msa0633570 | Msa1044430 | 0.800228 | 1.590051e-48 | -8.615850e-47 |
| Msa0659990 | Msa1044430 | 0.814506 | 1.488520e-51 | -8.615850e-47 |
| Msa0683780 | Msa1044430 | 0.830678 | 2.565799e-55 | -8.615850e-47 |
| Msa0687630 | Msa1044430 | 0.800192 | 1.617491e-48 | -8.615850e-47 |
| Msa0824640 | Msa1044430 | 0.819245 | 1.284981e-52 | -8.615850e-47 |
| Msa0126770 | Msa1044430 | 0.814421 | 1.553882e-51 | -8.615850e-47 |
| Msa0127850 | Msa1044430 | 0.823767 | 1.160094e-53 | -8.615850e-47 |
| Msa0147980 | Msa1044430 | 0.814445 | 1.535064e-51 | -8.615850e-47 |
| Msa0155430 | Msa1044430 | 0.802824 | 4.670129e-49 | -8.615850e-47 |
| Msa0166750 | Msa1044430 | 0.821140 | 4.730542e-53 | -8.615850e-47 |
| Msa0167480 | Msa1044430 | 0.805190 | 1.504541e-49 | -8.615850e-47 |
| Msa0171850 | Msa1044430 | 0.815914 | 7.240595e-52 | -8.615850e-47 |
| Msa0173170 | Msa1044430 | 0.806490 | 8.019297e-50 | -8.615850e-47 |
| Msa0174000 | Msa1044430 | 0.828372 | 9.324985e-55 | -8.615850e-47 |
| Msa0174770 | Msa1044430 | 0.809655 | 1.699318e-50 | -8.615850e-47 |
| Msa0202830 | Msa1044430 | 0.813268 | 2.790133e-51 | -8.615850e-47 |
| Msa0221600 | Msa1044430 | 0.818328 | 2.075586e-52 | -8.615850e-47 |
| Msa0384670 | Msa1044430 | 0.821818 | 3.298332e-53 | -8.615850e-47 |
| Msa0403190 | Msa1044430 | 0.802805 | 4.713679e-49 | -8.615850e-47 |
| Msa0434570 | Msa1044430 | 0.812815 | 3.505689e-51 | -8.615850e-47 |
| Msa0434770 | Msa1044430 | 0.817317 | 3.511675e-52 | -8.615850e-47 |
| Msa0436200 | Msa1044430 | 0.803773 | 2.970404e-49 | -8.615850e-47 |
| Msa0478580 | Msa1044430 | 0.836691 | 8.066568e-57 | -8.615850e-47 |
| Msa0980940 | Msa1044430 | 0.836274 | 1.030091e-56 | -8.615850e-47 |
| Msa1025940 | Msa1044430 | 0.803020 | 4.255303e-49 | -8.615850e-47 |
| Msa1044430 | Msa1070050 | 0.801637 | 8.196705e-49 | -8.615850e-47 |
| Msa1044430 | Msa1083880 | 0.855539 | 5.896719e-62 | -8.615850e-47 |
| Msa1044430 | Msa1173900 | 0.800631 | 1.316392e-48 | -8.615850e-47 |
| Msa1044430 | Msa1184370 | 0.825838 | 3.768465e-54 | -8.615850e-47 |
| Msa1044430 | Msa1201830 | 0.836185 | 1.085009e-56 | -8.615850e-47 |
| Msa1044430 | Msa1227690 | 0.838351 | 3.028421e-57 | -8.615850e-47 |
| Msa1044430 | Msa1294840 | 0.847945 | 8.385950e-60 | -8.615850e-47 |
| Msa1044430 | Msa1310690 | 0.832636 | 8.442235e-56 | -8.615850e-47 |
| Msa1044430 | Msa1345450 | 0.817892 | 2.605005e-52 | -8.615850e-47 |
| Msa1044430 | Msa1356610 | 0.801140 | 1.036087e-48 | -8.615850e-47 |
| Msa1044430 | Msa1411950 | 0.809308 | 2.017272e-50 | -8.615850e-47 |
| Msa1044430 | Msa1432480 | 0.807543 | 4.801219e-50 | -8.615850e-47 |
| Msa1044430 | Msa1442850 | 0.803115 | 4.065796e-49 | -8.615850e-47 |
| Msa1044430 | Msa1457790 | 0.813357 | 2.666762e-51 | -8.615850e-47 |
| Msa1044430 | Msa1465080 | 0.806543 | 7.815854e-50 | -8.615850e-47 |
| Msa0291520 | Msa1044430 | 0.836524 | 8.897577e-57 | -8.615850e-47 |
| Msa0321170 | Msa1044430 | 0.804300 | 2.307557e-49 | -8.615850e-47 |
| Msa0322590 | Msa1044430 | 0.831008 | 2.128935e-55 | -8.615850e-47 |
| Msa0511770 | Msa1044430 | 0.807409 | 5.126965e-50 | -8.615850e-47 |
| Msa0547990 | Msa1044430 | 0.801885 | 7.291782e-49 | -8.615850e-47 |
| Msa0593700 | Msa1044430 | 0.801122 | 1.045035e-48 | -8.615850e-47 |
| Msa0599900 | Msa1044430 | 0.886311 | 3.819502e-72 | -8.615850e-47 |
| Msa0864010 | Msa1044430 | 0.816744 | 4.722592e-52 | -8.615850e-47 |
| Msa0943170 | Msa1044430 | 0.821400 | 4.120323e-53 | -8.615850e-47 |
| Msa0963020 | Msa1044430 | 0.804481 | 2.116519e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1044430 | MtrunA17_Chr4g0002161 | 95.599 | 409 | 7 | 2 | 1 | 398 | 1 | 409 | 0.0 | 800 |
| Msa1044430 | MtrunA17_Chr7g0230061 | 68.317 | 404 | 112 | 4 | 10 | 397 | 15 | 418 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1044430 | AT1G51540.1 | 72.973 | 407 | 85 | 5 | 13 | 397 | 11 | 414 | 0.0 | 616 |
| Msa1044430 | AT3G27220.1 | 62.010 | 408 | 130 | 4 | 13 | 396 | 20 | 426 | 0.0 | 526 |
Find 100 sgRNAs with CRISPR-Local
Find 338 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAACTCTAGTTGGATTT+TGG | 0.130657 | 7_2:-2743856 | Msa1044430:CDS |
| GTGATCTGCGTCGGACTTCT+AGG | 0.209800 | 7_2:-2748618 | Msa1044430:CDS |
| AATGATCGTCTTTATGTTCT+TGG | 0.209886 | 7_2:-2745373 | Msa1044430:CDS |
| GAAATGGCACATTCACATTT+AGG | 0.243377 | 7_2:-2746837 | Msa1044430:CDS |
| TCAATATGTGAGTTTGGTTT+TGG | 0.271476 | 7_2:+2745097 | None:intergenic |
| GAAATTGGAACGAGGGAAAT+AGG | 0.276239 | 7_2:+2748548 | None:intergenic |
| CTTCACCTTTGCTGCAATTT+CGG | 0.276741 | 7_2:+2743674 | None:intergenic |
| AACAATTCCATTGTTATTGC+TGG | 0.285172 | 7_2:-2745055 | Msa1044430:CDS |
| ACCTGCTCCTCAACTTGTTT+GGG | 0.304175 | 7_2:-2748439 | Msa1044430:CDS |
| GCAAATTCAATATGTGAGTT+TGG | 0.314174 | 7_2:+2745091 | None:intergenic |
| AAAACTCGGTTCAGCCAAAT+TGG | 0.314857 | 7_2:-2748643 | Msa1044430:CDS |
| TACCTGCTCCTCAACTTGTT+TGG | 0.320322 | 7_2:-2748440 | Msa1044430:CDS |
| CCAAAGTATTCAAGTTAAAC+TGG | 0.328184 | 7_2:+2744975 | None:intergenic |
| GATATATAAATAGTATAAAC+AGG | 0.330436 | 7_2:+2743385 | None:intergenic |
| ACCGCTCCATTGCTTTGTTT+CGG | 0.343075 | 7_2:+2746722 | None:intergenic |
| TGTGAATGTGCCATTTCTTT+TGG | 0.343344 | 7_2:+2746843 | None:intergenic |
| GCACCCTGAAACCAAGAAAA+TGG | 0.346126 | 7_2:-2745017 | Msa1044430:CDS |
| TCACCTGTTCCTAGACTTGA+TGG | 0.347002 | 7_2:-2748402 | Msa1044430:CDS |
| GACGCAGATCACAACCAATT+TGG | 0.352455 | 7_2:+2748629 | None:intergenic |
| GGCTGGTTGTACTTCACTTC+AGG | 0.372763 | 7_2:-2743830 | Msa1044430:CDS |
| CCTCTCCAAAGTTGAGTTGC+CGG | 0.377037 | 7_2:+2745786 | None:intergenic |
| TATATAGTCAATGGGCAGTA+TGG | 0.395192 | 7_2:-2746789 | Msa1044430:CDS |
| ACATCCACACACAAACAGTT+AGG | 0.395991 | 7_2:-2743474 | Msa1044430:three_prime_UTR |
| ATAAAGAATATGTAATATAT+CGG | 0.437907 | 7_2:+2743648 | None:intergenic |
| TCCCAAACAAGTTGAGGAGC+AGG | 0.438279 | 7_2:+2748438 | None:intergenic |
| GTGAGGTCCTCCACGGGGAA+TGG | 0.439679 | 7_2:+2745647 | None:intergenic |
| CCAGTTTAACTTGAATACTT+TGG | 0.440901 | 7_2:-2744975 | Msa1044430:intron |
| TGAGGTCCTCCACGGGGAAT+GGG | 0.456202 | 7_2:+2745648 | None:intergenic |
| AGATACATTTATATAGTCAA+TGG | 0.456594 | 7_2:-2746798 | Msa1044430:CDS |
| AATTCAGTATTCACTGAGAA+TGG | 0.458255 | 7_2:-2743604 | Msa1044430:three_prime_UTR |
| TATGTTCTTGGTGGTCAAGA+AGG | 0.468117 | 7_2:-2745361 | Msa1044430:CDS |
| TGGAGTCTTGCTGTCAAGAA+TGG | 0.473803 | 7_2:-2745705 | Msa1044430:CDS |
| TGAAGAAGCCCATAGAAAAT+CGG | 0.474601 | 7_2:+2748581 | None:intergenic |
| CGGGTGAAAACAACTCTAGT+TGG | 0.475974 | 7_2:-2743863 | Msa1044430:CDS |
| GATCGTCTTTATGTTCTTGG+TGG | 0.479295 | 7_2:-2745370 | Msa1044430:CDS |
| ATGCACCGGCAACTCAACTT+TGG | 0.480966 | 7_2:-2745791 | Msa1044430:CDS |
| AAGAACATAAAGACGATCAT+TGG | 0.484359 | 7_2:+2745375 | None:intergenic |
| TCATCCAACATGTAAACATC+AGG | 0.495238 | 7_2:+2745151 | None:intergenic |
| TCCCTCCTTTGCCAGTCCCT+AGG | 0.504174 | 7_2:-2746698 | Msa1044430:intron |
| GATACATTTATATAGTCAAT+GGG | 0.516300 | 7_2:-2746797 | Msa1044430:CDS |
| AGGTGGGACCTCTACATTGT+GGG | 0.517328 | 7_2:+2746766 | None:intergenic |
| GCACCATCAAGTCTAGGAAC+AGG | 0.519537 | 7_2:+2748399 | None:intergenic |
| GAGAGGTCGATTGCATGTAA+TGG | 0.523115 | 7_2:-2745769 | Msa1044430:CDS |
| GAATGACATGGTTCGTCCGT+CGG | 0.523631 | 7_2:-2748667 | None:intergenic |
| AGAGGTCGATTGCATGTAAT+GGG | 0.523894 | 7_2:-2745768 | Msa1044430:CDS |
| GAATGGAAAAGCATTAGAAA+AGG | 0.526434 | 7_2:-2745688 | Msa1044430:CDS |
| ACTCACATATTGAATTTGCA+TGG | 0.528766 | 7_2:-2745087 | Msa1044430:CDS |
| AGACTCCAATGTTCTAATCC+AGG | 0.535412 | 7_2:+2745720 | None:intergenic |
| CATTTAGGAATGGCGACAGA+TGG | 0.535771 | 7_2:-2746822 | Msa1044430:CDS |
| TTGCAGAAGTGGTCTGTGAT+CGG | 0.535945 | 7_2:-2743899 | Msa1044430:intron |
| GAAAAGCATTAGAAAAGGAG+TGG | 0.542116 | 7_2:-2745683 | Msa1044430:CDS |
| TTCTTTAGGAACAATGATTG+TGG | 0.544550 | 7_2:+2748518 | None:intergenic |
| AAAAGGTCGTTGGAGATATG+TGG | 0.550995 | 7_2:-2743772 | Msa1044430:CDS |
| GAACCTGTGAGGTCCTCCAC+GGG | 0.554212 | 7_2:+2745641 | None:intergenic |
| TTCCCCGTGGAGGACCTCAC+AGG | 0.556102 | 7_2:-2745644 | Msa1044430:intron |
| ACTCAATTTCAGATATGCAC+CGG | 0.558589 | 7_2:-2745805 | Msa1044430:intron |
| CTCACATATTGAATTTGCAT+GGG | 0.558890 | 7_2:-2745086 | Msa1044430:CDS |
| TGATCGGAAAGTTACCATAC+CGG | 0.559582 | 7_2:-2743883 | Msa1044430:CDS |
| GAACGAGGGAAATAGGAAGA+TGG | 0.564903 | 7_2:+2748555 | None:intergenic |
| CATCCACACACAAACAGTTA+GGG | 0.567555 | 7_2:-2743473 | Msa1044430:three_prime_UTR |
| GGCACATTCACATTTAGGAA+TGG | 0.569145 | 7_2:-2746832 | Msa1044430:CDS |
| ACTATCCGAAATTGCAGCAA+AGG | 0.573644 | 7_2:-2743679 | Msa1044430:three_prime_UTR |
| TTTGATGATGGAACTTGGGG+AGG | 0.574262 | 7_2:-2746879 | Msa1044430:CDS |
| AATTCCATTGTTATTGCTGG+AGG | 0.576103 | 7_2:-2745052 | Msa1044430:CDS |
| ATATATACATACCTAGGGAC+TGG | 0.577408 | 7_2:+2746687 | None:intergenic |
| CTATCCTGATGTTTACATGT+TGG | 0.581139 | 7_2:-2745155 | Msa1044430:CDS |
| ATACACCTGGATTAGAACAT+TGG | 0.581948 | 7_2:-2745725 | Msa1044430:CDS |
| CCACCCTAACTGTTTGTGTG+TGG | 0.586515 | 7_2:+2743470 | None:intergenic |
| TACCTAGGGACTGGCAAAGG+AGG | 0.586983 | 7_2:+2746696 | None:intergenic |
| TGTTTCGGTGTCAAGTACAA+AGG | 0.589819 | 7_2:+2746737 | None:intergenic |
| GTTCGTCCGTCGGTAAAACT+CGG | 0.592046 | 7_2:-2748657 | Msa1044430:CDS |
| AAATTGGTTGTGATCTGCGT+CGG | 0.599739 | 7_2:-2748627 | Msa1044430:CDS |
| AAATTGCAGCAAAGGTGAAG+AGG | 0.599908 | 7_2:-2743671 | Msa1044430:three_prime_UTR |
| ATAGCAGCACCATCAAGTCT+AGG | 0.602814 | 7_2:+2748393 | None:intergenic |
| ACGATCATTGGCCACAACAC+AGG | 0.602958 | 7_2:+2745387 | None:intergenic |
| CACTTCAGGACAGAGAGACA+AGG | 0.609550 | 7_2:-2743816 | Msa1044430:CDS |
| AAGTACAAAGGTATCAGAGG+TGG | 0.611306 | 7_2:+2746749 | None:intergenic |
| ACCTAGGGACTGGCAAAGGA+GGG | 0.612823 | 7_2:+2746697 | None:intergenic |
| ACATACCTAGGGACTGGCAA+AGG | 0.618922 | 7_2:+2746693 | None:intergenic |
| TAAGTGCTCACGCAGGATGG+AGG | 0.622842 | 7_2:-2745305 | Msa1044430:intron |
| CGAACCTGTGAGGTCCTCCA+CGG | 0.624364 | 7_2:+2745640 | None:intergenic |
| CAGTATGGCCCACAATGTAG+AGG | 0.627150 | 7_2:-2746774 | Msa1044430:CDS |
| TGTTGGATGACGAGATGAAG+TGG | 0.632038 | 7_2:-2745138 | Msa1044430:CDS |
| GTCAAGTACAAAGGTATCAG+AGG | 0.634465 | 7_2:+2746746 | None:intergenic |
| GATCGGAAAGTTACCATACC+GGG | 0.637162 | 7_2:-2743882 | Msa1044430:CDS |
| AAAGAGAATCGACATACACC+TGG | 0.643815 | 7_2:-2745738 | Msa1044430:CDS |
| TTGACACCGAAACAAAGCAA+TGG | 0.649372 | 7_2:-2746728 | Msa1044430:CDS |
| AGTACAAAGGTATCAGAGGT+GGG | 0.650373 | 7_2:+2746750 | None:intergenic |
| GAGGTGGGACCTCTACATTG+TGG | 0.657473 | 7_2:+2746765 | None:intergenic |
| ATATATAAATAGTATAAACA+GGG | 0.659834 | 7_2:+2743386 | None:intergenic |
| ACCGAAACAAAGCAATGGAG+CGG | 0.665583 | 7_2:-2746723 | Msa1044430:CDS |
| ACTTCAGGACAGAGAGACAA+GGG | 0.669595 | 7_2:-2743815 | Msa1044430:CDS |
| TGTGCCTCCAGCAATAACAA+TGG | 0.669691 | 7_2:+2745048 | None:intergenic |
| GGTCGATTGCATGTAATGGG+TGG | 0.672590 | 7_2:-2745765 | Msa1044430:CDS |
| CCACACACAAACAGTTAGGG+TGG | 0.675361 | 7_2:-2743470 | Msa1044430:three_prime_UTR |
| CCGGCAACTCAACTTTGGAG+AGG | 0.698757 | 7_2:-2745786 | Msa1044430:CDS |
| GAGATACCCATTCCCCGTGG+AGG | 0.712935 | 7_2:-2745654 | Msa1044430:CDS |
| TATTAAGCAACGAACCTGTG+AGG | 0.715011 | 7_2:+2745630 | None:intergenic |
| AGTGAGATACCCATTCCCCG+TGG | 0.747527 | 7_2:-2745657 | Msa1044430:CDS |
| AACCTGTGAGGTCCTCCACG+GGG | 0.758262 | 7_2:+2745642 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATATAAATAAAGATTAAAA+TGG | + | chr7_2:2746534-2746553 | None:intergenic | 10.0% |
| !!! | ATAGAAATATTAAATTTTGA+AGG | + | chr7_2:2747862-2747881 | None:intergenic | 10.0% |
| !! | ATAAAGAATATGTAATATAT+CGG | + | chr7_2:2748375-2748394 | None:intergenic | 10.0% |
| !! | ATATATAAATAGTATAAACA+GGG | + | chr7_2:2748637-2748656 | None:intergenic | 10.0% |
| !!! | GATATATATAATTTTGATGA+TGG | - | chr7_2:2745129-2745148 | Msa1044430:CDS | 15.0% |
| !! | TCAATATCTTTGATATAAAA+TGG | + | chr7_2:2745498-2745517 | None:intergenic | 15.0% |
| !!! | ATCAAAGATGTTTTTTATTT+AGG | - | chr7_2:2745475-2745494 | Msa1044430:intron | 15.0% |
| !!! | TAGTTCTAATCAATATTTTA+TGG | + | chr7_2:2746507-2746526 | None:intergenic | 15.0% |
| !! | TAATAATTCGAAGAAAAAAA+AGG | + | chr7_2:2747465-2747484 | None:intergenic | 15.0% |
| !! | AATTAAAAATTGTAAAACCT+GGG | + | chr7_2:2747561-2747580 | None:intergenic | 15.0% |
| !! | ATAAATATAGTAAGATGATT+AGG | - | chr7_2:2747596-2747615 | Msa1044430:intron | 15.0% |
| !! | GATATATAAATAGTATAAAC+AGG | + | chr7_2:2748638-2748657 | None:intergenic | 15.0% |
| !!! | TTCTTTTGTTCTTTTTCTTT+AGG | + | chr7_2:2743519-2743538 | None:intergenic | 20.0% |
| !! | GTTAGTTACATTATTAATGT+CGG | + | chr7_2:2743691-2743710 | None:intergenic | 20.0% |
| !! | ATAGTTAATTACAATTAGTG+TGG | - | chr7_2:2743882-2743901 | Msa1044430:CDS | 20.0% |
| !! | TAGTTAATTACAATTAGTGT+GGG | - | chr7_2:2743883-2743902 | Msa1044430:CDS | 20.0% |
| !!! | ATTTTGATAAATAGCTTAGT+TGG | - | chr7_2:2744259-2744278 | Msa1044430:intron | 20.0% |
| !!! | TTTTGATAAATAGCTTAGTT+GGG | - | chr7_2:2744260-2744279 | Msa1044430:intron | 20.0% |
| !! | CTATAGTTAATGAGAAAATA+TGG | - | chr7_2:2744318-2744337 | Msa1044430:intron | 20.0% |
| !!! | TTGTTTTCATTTAAGCTATA+AGG | - | chr7_2:2744346-2744365 | Msa1044430:intron | 20.0% |
| !! | TTATATACAACAAACACTTA+AGG | + | chr7_2:2744531-2744550 | None:intergenic | 20.0% |
| !!! | TTAAGTGTTTGTTGTATATA+AGG | - | chr7_2:2744530-2744549 | Msa1044430:intron | 20.0% |
| !!! | TAAGTGTTTGTTGTATATAA+GGG | - | chr7_2:2744531-2744550 | Msa1044430:intron | 20.0% |
| !! | GTGTTTAAAAGAACTTATAT+GGG | + | chr7_2:2745057-2745076 | None:intergenic | 20.0% |
| !!! | GTTATATTATTGTGTTTTTC+AGG | - | chr7_2:2745092-2745111 | Msa1044430:CDS | 20.0% |
| !! | AGATACATTTATATAGTCAA+TGG | - | chr7_2:2745222-2745241 | Msa1044430:intron | 20.0% |
| !! | GATACATTTATATAGTCAAT+GGG | - | chr7_2:2745223-2745242 | Msa1044430:intron | 20.0% |
| !! | TTTCTGATATTTCTTTGTAA+TGG | - | chr7_2:2745413-2745432 | Msa1044430:intron | 20.0% |
| !!! | AATGTAATTTTTCTTGTATC+TGG | - | chr7_2:2746161-2746180 | Msa1044430:intron | 20.0% |
| !!! | ACTGATAAACATCATATTTT+AGG | - | chr7_2:2746609-2746628 | Msa1044430:intron | 20.0% |
| !!! | CTGATAAACATCATATTTTA+GGG | - | chr7_2:2746610-2746629 | Msa1044430:intron | 20.0% |
| !!! | TTTTTTCTTCGAATTATTAC+CGG | - | chr7_2:2747466-2747485 | Msa1044430:intron | 20.0% |
| !! | CAATTAAAAATTGTAAAACC+TGG | + | chr7_2:2747562-2747581 | None:intergenic | 20.0% |
| !!! | GTTTTACAATTTTTAATTGC+TGG | - | chr7_2:2747563-2747582 | Msa1044430:intron | 20.0% |
| !!! | AAATTTTGAAATTGGAACGA+GGG | + | chr7_2:2743482-2743501 | None:intergenic | 25.0% |
| !!! | GATTGTGGAAATTTTGAAAT+TGG | + | chr7_2:2743490-2743509 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTCAAGAGTTTAG+CGG | - | chr7_2:2743737-2743756 | Msa1044430:exon | 25.0% |
| !! | TCTAAGACATTTGATATGTT+GGG | + | chr7_2:2743820-2743839 | None:intergenic | 25.0% |
| !!! | TTCTAAGACATTTGATATGT+TGG | + | chr7_2:2743821-2743840 | None:intergenic | 25.0% |
| !!! | TTGGATATTCTAGTTACTTT+TGG | + | chr7_2:2743931-2743950 | None:intergenic | 25.0% |
| !! | CAGTTAAAATAGTTTCAAGT+TGG | + | chr7_2:2743950-2743969 | None:intergenic | 25.0% |
| !! | ATTTTAAATGTGGAAAAGTG+GGG | + | chr7_2:2744047-2744066 | None:intergenic | 25.0% |
| !! | CATTTTAAATGTGGAAAAGT+GGG | + | chr7_2:2744048-2744067 | None:intergenic | 25.0% |
| !! | ACATTTTAAATGTGGAAAAG+TGG | + | chr7_2:2744049-2744068 | None:intergenic | 25.0% |
| !!! | ACTTTTCCACATTTAAAATG+TGG | - | chr7_2:2744048-2744067 | Msa1044430:intron | 25.0% |
| !!! | CTTTTCCACATTTAAAATGT+GGG | - | chr7_2:2744049-2744068 | Msa1044430:intron | 25.0% |
| ! | TATCAACTGAGTTGTATTTA+CGG | - | chr7_2:2744144-2744163 | Msa1044430:intron | 25.0% |
| ! | TTTGATGTATAGCTTAGTTA+AGG | - | chr7_2:2744217-2744236 | Msa1044430:intron | 25.0% |
| ! | AGTTAAGGACTTATTGAATA+AGG | - | chr7_2:2744232-2744251 | Msa1044430:intron | 25.0% |
| ! | GTTAAGGACTTATTGAATAA+GGG | - | chr7_2:2744233-2744252 | Msa1044430:intron | 25.0% |
| ! | TTGGGTGTTTATTATATAAG+TGG | - | chr7_2:2744278-2744297 | Msa1044430:intron | 25.0% |
| ! | AATTAGCTGGAAACAATTTA+TGG | - | chr7_2:2744402-2744421 | Msa1044430:intron | 25.0% |
| ! | ATAACATGTATTAGAAATCG+TGG | - | chr7_2:2744563-2744582 | Msa1044430:intron | 25.0% |
| !! | AAATAAAAGCTTGTTCGAAA+CGG | + | chr7_2:2744756-2744775 | None:intergenic | 25.0% |
| ! | CGTGTTTAAAAGAACTTATA+TGG | + | chr7_2:2745058-2745077 | None:intergenic | 25.0% |
| !!! | ATAATTTTGATGATGGAACT+TGG | - | chr7_2:2745136-2745155 | Msa1044430:CDS | 25.0% |
| !!! | TAATTTTGATGATGGAACTT+GGG | - | chr7_2:2745137-2745156 | Msa1044430:CDS | 25.0% |
| ! | CATTCATATATACATACCTA+GGG | + | chr7_2:2745341-2745360 | None:intergenic | 25.0% |
| ! | ACATTCATATATACATACCT+AGG | + | chr7_2:2745342-2745361 | None:intergenic | 25.0% |
| !!! | GATGTTTTTTATTTAGGAAG+TGG | - | chr7_2:2745525-2745544 | Msa1044430:intron | 25.0% |
| !!! | ACTAGCATATTTTAGTCATT+AGG | - | chr7_2:2745569-2745588 | Msa1044430:intron | 25.0% |
| ! | TTGAAGTTTCAAAGAAGTTA+TGG | - | chr7_2:2745724-2745743 | Msa1044430:CDS | 25.0% |
| ! | TGAAGTTTCAAAGAAGTTAT+GGG | - | chr7_2:2745725-2745744 | Msa1044430:CDS | 25.0% |
| !!! | ATTTTTCTTGTATCTGGTTT+TGG | - | chr7_2:2746167-2746186 | Msa1044430:intron | 25.0% |
| !!! | TTTTTCTTGTATCTGGTTTT+GGG | - | chr7_2:2746168-2746187 | Msa1044430:intron | 25.0% |
| !! | GACATATACATCATACATTT+TGG | + | chr7_2:2746575-2746594 | None:intergenic | 25.0% |
| !!! | ACCAAGAAAATGGTTTTAAA+CGG | - | chr7_2:2747013-2747032 | Msa1044430:intron | 25.0% |
| ! | ATTATAAAAGCTCCATAAGT+GGG | + | chr7_2:2747286-2747305 | None:intergenic | 25.0% |
| ! | AATTATAAAAGCTCCATAAG+TGG | + | chr7_2:2747287-2747306 | None:intergenic | 25.0% |
| !! | CTTATGGAGCTTTTATAATT+TGG | - | chr7_2:2747287-2747306 | Msa1044430:intron | 25.0% |
| !! | GAATGCAAGTTTTTATGTTA+AGG | - | chr7_2:2747697-2747716 | Msa1044430:intron | 25.0% |
| !! | AGTTTTTATGTTAAGGTTCT+TGG | - | chr7_2:2747704-2747723 | Msa1044430:intron | 25.0% |
| !! | GTTTTTATGTTAAGGTTCTT+GGG | - | chr7_2:2747705-2747724 | Msa1044430:intron | 25.0% |
| !! | TGTTATTAATTTTGCAGAAG+TGG | - | chr7_2:2748110-2748129 | Msa1044430:intron | 25.0% |
| !! | GTAAATCTGTCTTTTGTATA+AGG | + | chr7_2:2748475-2748494 | None:intergenic | 25.0% |
| !! | CAATGTCTTTTACAAAGTAA+AGG | + | chr7_2:2748526-2748545 | None:intergenic | 25.0% |
| !!! | GAAATTTTGAAATTGGAACG+AGG | + | chr7_2:2743483-2743502 | None:intergenic | 30.0% |
| ! | TTCTTTAGGAACAATGATTG+TGG | + | chr7_2:2743505-2743524 | None:intergenic | 30.0% |
| !! | AATCTTTTCTTCGTTTTTGC+TGG | - | chr7_2:2743660-2743679 | Msa1044430:three_prime_UTR | 30.0% |
| ACATACTAATTGATCAGAAG+TGG | - | chr7_2:2743770-2743789 | Msa1044430:CDS | 30.0% | |
| CATACTAATTGATCAGAAGT+GGG | - | chr7_2:2743771-2743790 | Msa1044430:CDS | 30.0% | |
| ATACTAATTGATCAGAAGTG+GGG | - | chr7_2:2743772-2743791 | Msa1044430:CDS | 30.0% | |
| AGACATTGCATAATATATGC+AGG | - | chr7_2:2743997-2744016 | Msa1044430:intron | 30.0% | |
| GACATTGCATAATATATGCA+GGG | - | chr7_2:2743998-2744017 | Msa1044430:intron | 30.0% | |
| ACATTGCATAATATATGCAG+GGG | - | chr7_2:2743999-2744018 | Msa1044430:intron | 30.0% | |
| !!! | TTTTTTGTAAAGTAGCCTAG+TGG | + | chr7_2:2744083-2744102 | None:intergenic | 30.0% |
| AACTTGCAACTAATCTAACT+AGG | - | chr7_2:2744116-2744135 | Msa1044430:intron | 30.0% | |
| ATCAACTGAGTTGTATTTAC+GGG | - | chr7_2:2744145-2744164 | Msa1044430:intron | 30.0% | |
| AAAACAATCCTTCAAAACGT+TGG | + | chr7_2:2744200-2744219 | None:intergenic | 30.0% | |
| TAACAGAAGCTATTGTTGTA+TGG | - | chr7_2:2744428-2744447 | Msa1044430:intron | 30.0% | |
| TGCTTATGAACAACTTATCT+AGG | + | chr7_2:2744495-2744514 | None:intergenic | 30.0% | |
| ATGTATTAGAAATCGTGGTT+GGG | - | chr7_2:2744568-2744587 | Msa1044430:intron | 30.0% | |
| ! | TTCTTTTAAACACGTCTTAG+TGG | - | chr7_2:2745064-2745083 | Msa1044430:CDS | 30.0% |
| !!! | AATTTTGATGATGGAACTTG+GGG | - | chr7_2:2745138-2745157 | Msa1044430:CDS | 30.0% |
| ! | TTTTGACATGCCAAAAGAAA+TGG | - | chr7_2:2745167-2745186 | Msa1044430:intron | 30.0% |
| ! | TGATCCATTTAGTTTCAGTT+AGG | - | chr7_2:2745867-2745886 | Msa1044430:intron | 30.0% |
| GAAACCTAACTGAAACTAAA+TGG | + | chr7_2:2745874-2745893 | None:intergenic | 30.0% | |
| !! | TTCACTAGTTTGACTTTTAG+TGG | - | chr7_2:2745891-2745910 | Msa1044430:intron | 30.0% |
| GAGACATGGAATAACATTTA+AGG | - | chr7_2:2745917-2745936 | Msa1044430:intron | 30.0% | |
| !!! | CACTTGTCTGACTTATTTTT+TGG | - | chr7_2:2746000-2746019 | Msa1044430:intron | 30.0% |
| !! | TTTTGGCTATCAGAAAATTG+TGG | - | chr7_2:2746017-2746036 | Msa1044430:intron | 30.0% |
| ! | CTATCAGAAAATTGTGGTTT+TGG | - | chr7_2:2746023-2746042 | Msa1044430:intron | 30.0% |
| !! | GAATGGAAAAGCATTAGAAA+AGG | - | chr7_2:2746332-2746351 | Msa1044430:intron | 30.0% |
| GTTTATCAGTAACAAATAGC+AGG | + | chr7_2:2746599-2746618 | None:intergenic | 30.0% | |
| AAGAACATAAAGACGATCAT+TGG | + | chr7_2:2746648-2746667 | None:intergenic | 30.0% | |
| AATGATCGTCTTTATGTTCT+TGG | - | chr7_2:2746647-2746666 | Msa1044430:intron | 30.0% | |
| !! | TCAATATGTGAGTTTGGTTT+TGG | + | chr7_2:2746926-2746945 | None:intergenic | 30.0% |
| GCAAATTCAATATGTGAGTT+TGG | + | chr7_2:2746932-2746951 | None:intergenic | 30.0% | |
| ACTCACATATTGAATTTGCA+TGG | - | chr7_2:2746933-2746952 | Msa1044430:intron | 30.0% | |
| CTCACATATTGAATTTGCAT+GGG | - | chr7_2:2746934-2746953 | Msa1044430:intron | 30.0% | |
| ! | AACAATTCCATTGTTATTGC+TGG | - | chr7_2:2746965-2746984 | Msa1044430:intron | 30.0% |
| ! | AAACCATTTTCTTGGTTTCA+GGG | + | chr7_2:2747009-2747028 | None:intergenic | 30.0% |
| ! | AAAACCATTTTCTTGGTTTC+AGG | + | chr7_2:2747010-2747029 | None:intergenic | 30.0% |
| !! | TCCGTTTAAAACCATTTTCT+TGG | + | chr7_2:2747017-2747036 | None:intergenic | 30.0% |
| ! | CCAAAGTATTCAAGTTAAAC+TGG | + | chr7_2:2747048-2747067 | None:intergenic | 30.0% |
| !! | CCAGTTTAACTTGAATACTT+TGG | - | chr7_2:2747045-2747064 | Msa1044430:intron | 30.0% |
| ACTTCTCTTATAAAGCTCTT+AGG | - | chr7_2:2747073-2747092 | Msa1044430:intron | 30.0% | |
| CATGCTGAAATAACAGAAAT+GGG | + | chr7_2:2747208-2747227 | None:intergenic | 30.0% | |
| ACATGCTGAAATAACAGAAA+TGG | + | chr7_2:2747209-2747228 | None:intergenic | 30.0% | |
| !! | ACTCACTTGAACTTTGAAAT+TGG | - | chr7_2:2747230-2747249 | Msa1044430:intron | 30.0% |
| !! | CTCACTTGAACTTTGAAATT+GGG | - | chr7_2:2747231-2747250 | Msa1044430:intron | 30.0% |
| GATTTCAGAACATAGAGAAA+GGG | + | chr7_2:2747331-2747350 | None:intergenic | 30.0% | |
| TGATTTCAGAACATAGAGAA+AGG | + | chr7_2:2747332-2747351 | None:intergenic | 30.0% | |
| CTACACTTAAATGACAGTAT+GGG | - | chr7_2:2747652-2747671 | Msa1044430:intron | 30.0% | |
| ACATAAAAACTTGCATTCAG+TGG | + | chr7_2:2747695-2747714 | None:intergenic | 30.0% | |
| AGCTATGACATTTCAGTAAA+TGG | + | chr7_2:2747757-2747776 | None:intergenic | 30.0% | |
| TCACAATTTACACTGTGAAA+AGG | + | chr7_2:2747789-2747808 | None:intergenic | 30.0% | |
| TGAAGAACTAGACACTAAAA+AGG | + | chr7_2:2747834-2747853 | None:intergenic | 30.0% | |
| ! | GTAACTTGTGTCATAACTTA+TGG | - | chr7_2:2747885-2747904 | Msa1044430:intron | 30.0% |
| TTGCATATTGACAGCAAATA+AGG | + | chr7_2:2747932-2747951 | None:intergenic | 30.0% | |
| AATACAATCCAATTGCAAGT+AGG | - | chr7_2:2748043-2748062 | Msa1044430:intron | 30.0% | |
| ! | AAACAACTCTAGTTGGATTT+TGG | - | chr7_2:2748164-2748183 | Msa1044430:intron | 30.0% |
| AATTCAGTATTCACTGAGAA+TGG | - | chr7_2:2748416-2748435 | Msa1044430:CDS | 30.0% | |
| !!! | AGATTTACTCACCTTTTTTG+AGG | - | chr7_2:2748487-2748506 | Msa1044430:CDS | 30.0% |
| ! | TGTCTTTTACAAAGTAAAGG+AGG | + | chr7_2:2748523-2748542 | None:intergenic | 30.0% |
| !!! | ACTCATTGCCGATTTTCTAT+GGG | - | chr7_2:2743431-2743450 | Msa1044430:three_prime_UTR | 35.0% |
| TGAAGAAGCCCATAGAAAAT+CGG | + | chr7_2:2743442-2743461 | None:intergenic | 35.0% | |
| ! | ATCTTTTCCCAAACAAGTTG+AGG | + | chr7_2:2743591-2743610 | None:intergenic | 35.0% |
| TACTAATTGATCAGAAGTGG+GGG | - | chr7_2:2743773-2743792 | Msa1044430:CDS | 35.0% | |
| !!! | TTTTTGAAGCTATTGTCGAG+AGG | - | chr7_2:2744372-2744391 | Msa1044430:intron | 35.0% |
| GAGAGGATATTGAAATTAGC+TGG | - | chr7_2:2744389-2744408 | Msa1044430:intron | 35.0% | |
| CAAACACTTAAGGCTACATT+TGG | + | chr7_2:2744521-2744540 | None:intergenic | 35.0% | |
| CATGTATTAGAAATCGTGGT+TGG | - | chr7_2:2744567-2744586 | Msa1044430:intron | 35.0% | |
| TGAACAAGTGTTTGTAAGTG+GGG | + | chr7_2:2744637-2744656 | None:intergenic | 35.0% | |
| CTGAACAAGTGTTTGTAAGT+GGG | + | chr7_2:2744638-2744657 | None:intergenic | 35.0% | |
| TGTTTCTTACAAGCGTAGTT+TGG | - | chr7_2:2744684-2744703 | Msa1044430:intron | 35.0% | |
| AGTTGCTTCTAACATTGAAG+AGG | - | chr7_2:2744900-2744919 | Msa1044430:intron | 35.0% | |
| !!! | TGTGAATGTGCCATTTCTTT+TGG | + | chr7_2:2745180-2745199 | None:intergenic | 35.0% |
| GAAATGGCACATTCACATTT+AGG | - | chr7_2:2745183-2745202 | Msa1044430:intron | 35.0% | |
| TATATAGTCAATGGGCAGTA+TGG | - | chr7_2:2745231-2745250 | Msa1044430:intron | 35.0% | |
| ATATATACATACCTAGGGAC+TGG | + | chr7_2:2745336-2745355 | None:intergenic | 35.0% | |
| TACTCCCTAAAATTACCACA+CGG | - | chr7_2:2745369-2745388 | Msa1044430:CDS | 35.0% | |
| ! | AATGCCGTGTGGTAATTTTA+GGG | + | chr7_2:2745376-2745395 | None:intergenic | 35.0% |
| ! | AAATGCCGTGTGGTAATTTT+AGG | + | chr7_2:2745377-2745396 | None:intergenic | 35.0% |
| AATAACAAACAAATGCCGTG+TGG | + | chr7_2:2745387-2745406 | None:intergenic | 35.0% | |
| TTCAAATTGTCGCATGATGT+AGG | - | chr7_2:2745444-2745463 | Msa1044430:intron | 35.0% | |
| TGCTCTATCATGATATGCAA+GGG | + | chr7_2:2745625-2745644 | None:intergenic | 35.0% | |
| TTGATGAACAGAGATGAGAT+AGG | + | chr7_2:2745675-2745694 | None:intergenic | 35.0% | |
| !! | CTATCTTTTGCTGTGCTATA+GGG | + | chr7_2:2745757-2745776 | None:intergenic | 35.0% |
| !! | TCTATCTTTTGCTGTGCTAT+AGG | + | chr7_2:2745758-2745777 | None:intergenic | 35.0% |
| ACAGCAAAAGATAGAGAAGT+GGG | - | chr7_2:2745763-2745782 | Msa1044430:CDS | 35.0% | |
| !! | CTAGTTTGACTTTTAGTGGA+CGG | - | chr7_2:2745895-2745914 | Msa1044430:intron | 35.0% |
| !! | AAGGCATTTTCCTACTAAGA+GGG | + | chr7_2:2745967-2745986 | None:intergenic | 35.0% |
| CAAGTGAACGATAAACAACA+AGG | + | chr7_2:2745986-2746005 | None:intergenic | 35.0% | |
| ! | TGTCTTTAGATGTCATTTGC+TGG | - | chr7_2:2746052-2746071 | Msa1044430:intron | 35.0% |
| ! | GTCTTTAGATGTCATTTGCT+GGG | - | chr7_2:2746053-2746072 | Msa1044430:intron | 35.0% |
| TGACTCTTCACTGTTGAAAA+AGG | - | chr7_2:2746105-2746124 | Msa1044430:intron | 35.0% | |
| ACTCAATTTCAGATATGCAC+CGG | - | chr7_2:2746215-2746234 | Msa1044430:intron | 35.0% | |
| ! | ATACACCTGGATTAGAACAT+TGG | - | chr7_2:2746295-2746314 | Msa1044430:intron | 35.0% |
| !! | GAAAAGCATTAGAAAAGGAG+TGG | - | chr7_2:2746337-2746356 | Msa1044430:intron | 35.0% |
| ! | TGGTCAAGAAGGTGATTTTA+TGG | - | chr7_2:2746670-2746689 | Msa1044430:intron | 35.0% |
| CTATCCTGATGTTTACATGT+TGG | - | chr7_2:2746865-2746884 | Msa1044430:CDS | 35.0% | |
| TCATCCAACATGTAAACATC+AGG | + | chr7_2:2746872-2746891 | None:intergenic | 35.0% | |
| ! | AATTCCATTGTTATTGCTGG+AGG | - | chr7_2:2746968-2746987 | Msa1044430:intron | 35.0% |
| TTGAATGCAATCACATGCAT+TGG | + | chr7_2:2747436-2747455 | None:intergenic | 35.0% | |
| ! | TGTCATTTAAGTGTAGGACT+GGG | + | chr7_2:2747648-2747667 | None:intergenic | 35.0% |
| ! | CCATACTGTCATTTAAGTGT+AGG | + | chr7_2:2747654-2747673 | None:intergenic | 35.0% |
| CCTACACTTAAATGACAGTA+TGG | - | chr7_2:2747651-2747670 | Msa1044430:intron | 35.0% | |
| TAGACACTAAAAAGGACTCA+AGG | + | chr7_2:2747826-2747845 | None:intergenic | 35.0% | |
| ! | GGAGCATCATACTTTGTTAT+TGG | - | chr7_2:2748064-2748083 | Msa1044430:intron | 35.0% |
| !! | ACTCTAGTTGGATTTTGGAA+TGG | - | chr7_2:2748169-2748188 | Msa1044430:intron | 35.0% |
| !!! | TTTTTTGGTGATGGATCATC+AGG | + | chr7_2:2748232-2748251 | None:intergenic | 35.0% |
| TGATGATCCATCACCAAAAA+AGG | - | chr7_2:2748231-2748250 | Msa1044430:intron | 35.0% | |
| !!! | ATATCTCCAACGACCTTTTT+TGG | + | chr7_2:2748247-2748266 | None:intergenic | 35.0% |
| AAAACTCGGTTCAGCCAAAT+TGG | - | chr7_2:2743377-2743396 | Msa1044430:three_prime_UTR | 40.0% | |
| AAATTGGTTGTGATCTGCGT+CGG | - | chr7_2:2743393-2743412 | Msa1044430:three_prime_UTR | 40.0% | |
| !!! | CACTCATTGCCGATTTTCTA+TGG | - | chr7_2:2743430-2743449 | Msa1044430:three_prime_UTR | 40.0% |
| GAAATTGGAACGAGGGAAAT+AGG | + | chr7_2:2743475-2743494 | None:intergenic | 40.0% | |
| TGCATAATATATGCAGGGGT+CGG | - | chr7_2:2744003-2744022 | Msa1044430:intron | 40.0% | |
| ! | GAGCTCCCACATTTTAAATG+TGG | + | chr7_2:2744057-2744076 | None:intergenic | 40.0% |
| TACTCTCTTAAACACTCGAC+AGG | + | chr7_2:2744466-2744485 | None:intergenic | 40.0% | |
| GAACAAGTGTTTGTAAGTGG+GGG | + | chr7_2:2744636-2744655 | None:intergenic | 40.0% | |
| CCTGAACAAGTGTTTGTAAG+TGG | + | chr7_2:2744639-2744658 | None:intergenic | 40.0% | |
| CCACTTACAAACACTTGTTC+AGG | - | chr7_2:2744636-2744655 | Msa1044430:intron | 40.0% | |
| AGGCTATCTCTCAACAAATG+TGG | - | chr7_2:2744656-2744675 | Msa1044430:intron | 40.0% | |
| GGCTATCTCTCAACAAATGT+GGG | - | chr7_2:2744657-2744676 | Msa1044430:intron | 40.0% | |
| CTTACAAGCGTAGTTTGGAA+TGG | - | chr7_2:2744689-2744708 | Msa1044430:intron | 40.0% | |
| AGGAAACAATAGCAAGCTCT+GGG | - | chr7_2:2744920-2744939 | Msa1044430:intron | 40.0% | |
| GGCACATTCACATTTAGGAA+TGG | - | chr7_2:2745188-2745207 | Msa1044430:intron | 40.0% | |
| !! | AGTACAAAGGTATCAGAGGT+GGG | + | chr7_2:2745273-2745292 | None:intergenic | 40.0% |
| !! | AAGTACAAAGGTATCAGAGG+TGG | + | chr7_2:2745274-2745293 | None:intergenic | 40.0% |
| !! | GTCAAGTACAAAGGTATCAG+AGG | + | chr7_2:2745277-2745296 | None:intergenic | 40.0% |
| !! | TGTTTCGGTGTCAAGTACAA+AGG | + | chr7_2:2745286-2745305 | None:intergenic | 40.0% |
| TTGACACCGAAACAAAGCAA+TGG | - | chr7_2:2745292-2745311 | Msa1044430:intron | 40.0% | |
| CTGCTCTATCATGATATGCA+AGG | + | chr7_2:2745626-2745645 | None:intergenic | 40.0% | |
| GCATATCATGATAGAGCAGT+TGG | - | chr7_2:2745627-2745646 | Msa1044430:intron | 40.0% | |
| CACAGCAAAAGATAGAGAAG+TGG | - | chr7_2:2745762-2745781 | Msa1044430:CDS | 40.0% | |
| ! | AGGCATTTTCCTACTAAGAG+GGG | + | chr7_2:2745966-2745985 | None:intergenic | 40.0% |
| !! | CAAGGCATTTTCCTACTAAG+AGG | + | chr7_2:2745968-2745987 | None:intergenic | 40.0% |
| ! | TGTCATTTGCTGGGACATTA+TGG | - | chr7_2:2746062-2746081 | Msa1044430:intron | 40.0% |
| !!! | TTCTTGTATCTGGTTTTGGG+TGG | - | chr7_2:2746171-2746190 | Msa1044430:intron | 40.0% |
| AGAGGTCGATTGCATGTAAT+GGG | - | chr7_2:2746252-2746271 | Msa1044430:intron | 40.0% | |
| AAAGAGAATCGACATACACC+TGG | - | chr7_2:2746282-2746301 | Msa1044430:intron | 40.0% | |
| AGACTCCAATGTTCTAATCC+AGG | + | chr7_2:2746303-2746322 | None:intergenic | 40.0% | |
| TATTAAGCAACGAACCTGTG+AGG | + | chr7_2:2746393-2746412 | None:intergenic | 40.0% | |
| !!! | ATATTTTAGGGCCTGTGTTG+TGG | - | chr7_2:2746622-2746641 | Msa1044430:intron | 40.0% |
| GATCGTCTTTATGTTCTTGG+TGG | - | chr7_2:2746650-2746669 | Msa1044430:intron | 40.0% | |
| ! | TATGTTCTTGGTGGTCAAGA+AGG | - | chr7_2:2746659-2746678 | Msa1044430:intron | 40.0% |
| ! | GTGATTTTATGGCCAAACCT+GGG | - | chr7_2:2746681-2746700 | Msa1044430:intron | 40.0% |
| AAAAATAGGTGACCCAGGTT+TGG | + | chr7_2:2746696-2746715 | None:intergenic | 40.0% | |
| CACTTAAAAATAGGTGACCC+AGG | + | chr7_2:2746701-2746720 | None:intergenic | 40.0% | |
| CTGCGTGAGCACTTAAAAAT+AGG | + | chr7_2:2746710-2746729 | None:intergenic | 40.0% | |
| !!! | CTATTTTTAAGTGCTCACGC+AGG | - | chr7_2:2746708-2746727 | Msa1044430:CDS | 40.0% |
| AAAGTTAGGCTGATCACAGA+AGG | + | chr7_2:2746783-2746802 | None:intergenic | 40.0% | |
| !!! | TGTGAGTTTGGTTTTGGCAT+TGG | + | chr7_2:2746920-2746939 | None:intergenic | 40.0% |
| GAACCGACACTTCTAATCTA+TGG | - | chr7_2:2747370-2747389 | Msa1044430:intron | 40.0% | |
| ! | ACGCCATAGATTAGAAGTGT+CGG | + | chr7_2:2747376-2747395 | None:intergenic | 40.0% |
| !! | ATGAAGCATTGACACAGACA+CGG | + | chr7_2:2747510-2747529 | None:intergenic | 40.0% |
| TGTCTGTGTCAATGCTTCAT+AGG | - | chr7_2:2747510-2747529 | Msa1044430:intron | 40.0% | |
| ATAGGTTGTTCATCCAGTGT+TGG | - | chr7_2:2747528-2747547 | Msa1044430:intron | 40.0% | |
| ! | CTGTCATTTAAGTGTAGGAC+TGG | + | chr7_2:2747649-2747668 | None:intergenic | 40.0% |
| GAGTCTATGACAGAGTGAAA+AGG | + | chr7_2:2747733-2747752 | None:intergenic | 40.0% | |
| AACAGACTTGACATATGTGC+AGG | + | chr7_2:2748004-2748023 | None:intergenic | 40.0% | |
| ATGATGCTCCTACTTGCAAT+TGG | + | chr7_2:2748054-2748073 | None:intergenic | 40.0% | |
| TGATCGGAAAGTTACCATAC+CGG | - | chr7_2:2748137-2748156 | Msa1044430:intron | 40.0% | |
| !! | CAACTAGAGTTGTTTTCACC+CGG | + | chr7_2:2748159-2748178 | None:intergenic | 40.0% |
| !!! | TAGTTGGATTTTGGAATGGC+TGG | - | chr7_2:2748173-2748192 | Msa1044430:intron | 40.0% |
| AAAAGGTCGTTGGAGATATG+TGG | - | chr7_2:2748248-2748267 | Msa1044430:intron | 40.0% | |
| ACTATCCGAAATTGCAGCAA+AGG | - | chr7_2:2748341-2748360 | Msa1044430:intron | 40.0% | |
| CTTCACCTTTGCTGCAATTT+CGG | + | chr7_2:2748349-2748368 | None:intergenic | 40.0% | |
| AAATTGCAGCAAAGGTGAAG+AGG | - | chr7_2:2748349-2748368 | Msa1044430:intron | 40.0% | |
| GTGTAAGCACACCTCAAAAA+AGG | + | chr7_2:2748501-2748520 | None:intergenic | 40.0% | |
| ACATCCACACACAAACAGTT+AGG | - | chr7_2:2748546-2748565 | Msa1044430:CDS | 40.0% | |
| CATCCACACACAAACAGTTA+GGG | - | chr7_2:2748547-2748566 | Msa1044430:CDS | 40.0% | |
| GACGCAGATCACAACCAATT+TGG | + | chr7_2:2743394-2743413 | None:intergenic | 45.0% | |
| GAACGAGGGAAATAGGAAGA+TGG | + | chr7_2:2743468-2743487 | None:intergenic | 45.0% | |
| ! | TACCTGCTCCTCAACTTGTT+TGG | - | chr7_2:2743580-2743599 | Msa1044430:three_prime_UTR | 45.0% |
| ! | ACCTGCTCCTCAACTTGTTT+GGG | - | chr7_2:2743581-2743600 | Msa1044430:three_prime_UTR | 45.0% |
| TCACCTGTTCCTAGACTTGA+TGG | - | chr7_2:2743618-2743637 | Msa1044430:three_prime_UTR | 45.0% | |
| ATAGCAGCACCATCAAGTCT+AGG | + | chr7_2:2743630-2743649 | None:intergenic | 45.0% | |
| CATTTGATATGTTGGGACGC+AGG | + | chr7_2:2743813-2743832 | None:intergenic | 45.0% | |
| CCAATTGAGCTAAACTCACG+AGG | + | chr7_2:2743974-2743993 | None:intergenic | 45.0% | |
| ! | CCTCGTGAGTTTAGCTCAAT+TGG | - | chr7_2:2743971-2743990 | Msa1044430:intron | 45.0% |
| ! | CGTGAGTTTAGCTCAATTGG+TGG | - | chr7_2:2743974-2743993 | Msa1044430:intron | 45.0% |
| GCATAATATATGCAGGGGTC+GGG | - | chr7_2:2744004-2744023 | Msa1044430:intron | 45.0% | |
| ! | TCCACTCACCAACGTTTTGA+AGG | - | chr7_2:2744189-2744208 | Msa1044430:intron | 45.0% |
| ! | TCCTTCAAAACGTTGGTGAG+TGG | + | chr7_2:2744193-2744212 | None:intergenic | 45.0% |
| !! | ACCTCACAAGTCGGTTTTGT+GGG | + | chr7_2:2744605-2744624 | None:intergenic | 45.0% |
| GAGGAAACAATAGCAAGCTC+TGG | - | chr7_2:2744919-2744938 | Msa1044430:intron | 45.0% | |
| !! | TTTGATGATGGAACTTGGGG+AGG | - | chr7_2:2745141-2745160 | Msa1044430:CDS | 45.0% |
| CATTTAGGAATGGCGACAGA+TGG | - | chr7_2:2745198-2745217 | Msa1044430:intron | 45.0% | |
| ACCGAAACAAAGCAATGGAG+CGG | - | chr7_2:2745297-2745316 | Msa1044430:intron | 45.0% | |
| !! | ACCGCTCCATTGCTTTGTTT+CGG | + | chr7_2:2745301-2745320 | None:intergenic | 45.0% |
| GGGAGATCAAGATTCAGCAT+TGG | + | chr7_2:2745605-2745624 | None:intergenic | 45.0% | |
| !! | ACTTTTAGTGGACGGAGACA+TGG | - | chr7_2:2745903-2745922 | Msa1044430:intron | 45.0% |
| ACTAAGAGGGGCAGACTAAA+TGG | + | chr7_2:2745954-2745973 | None:intergenic | 45.0% | |
| TTTAGTCTGCCCCTCTTAGT+AGG | - | chr7_2:2745954-2745973 | Msa1044430:intron | 45.0% | |
| GAGAGGTCGATTGCATGTAA+TGG | - | chr7_2:2746251-2746270 | Msa1044430:intron | 45.0% | |
| ! | TGGAGTCTTGCTGTCAAGAA+TGG | - | chr7_2:2746315-2746334 | Msa1044430:intron | 45.0% |
| ! | GGTGATTTTATGGCCAAACC+TGG | - | chr7_2:2746680-2746699 | Msa1044430:intron | 45.0% |
| !! | TTTTAAGTGCTCACGCAGGA+TGG | - | chr7_2:2746712-2746731 | Msa1044430:CDS | 45.0% |
| CAGCATCGCAGAAGAAAGTT+AGG | + | chr7_2:2746797-2746816 | None:intergenic | 45.0% | |
| TGTTGGATGACGAGATGAAG+TGG | - | chr7_2:2746882-2746901 | Msa1044430:CDS | 45.0% | |
| !!! | GAGTTTGGTTTTGGCATTGG+AGG | + | chr7_2:2746917-2746936 | None:intergenic | 45.0% |
| TGTGCCTCCAGCAATAACAA+TGG | + | chr7_2:2746975-2746994 | None:intergenic | 45.0% | |
| GCACCCTGAAACCAAGAAAA+TGG | - | chr7_2:2747003-2747022 | Msa1044430:intron | 45.0% | |
| !! | CTCTAGTTCTCTCCCACTTA+TGG | - | chr7_2:2747271-2747290 | Msa1044430:intron | 45.0% |
| ACACATGTCAGTATCCGACA+TGG | - | chr7_2:2747408-2747427 | Msa1044430:intron | 45.0% | |
| ATTGACACAGACACGGACAT+CGG | + | chr7_2:2747503-2747522 | None:intergenic | 45.0% | |
| TCAAGTCTGTTGTCTGCTGA+AGG | - | chr7_2:2748013-2748032 | Msa1044430:intron | 45.0% | |
| TTGCAGAAGTGGTCTGTGAT+CGG | - | chr7_2:2748121-2748140 | Msa1044430:intron | 45.0% | |
| GATCGGAAAGTTACCATACC+GGG | - | chr7_2:2748138-2748157 | Msa1044430:intron | 45.0% | |
| !! | AGAGTTGTTTTCACCCGGTA+TGG | + | chr7_2:2748154-2748173 | None:intergenic | 45.0% |
| CGGGTGAAAACAACTCTAGT+TGG | - | chr7_2:2748157-2748176 | Msa1044430:intron | 45.0% | |
| ACTTCAGGACAGAGAGACAA+GGG | - | chr7_2:2748205-2748224 | Msa1044430:intron | 45.0% | |
| !!! | CCAACGACCTTTTTTGGTGA+TGG | + | chr7_2:2748241-2748260 | None:intergenic | 45.0% |
| CCATCACCAAAAAAGGTCGT+TGG | - | chr7_2:2748238-2748257 | Msa1044430:intron | 45.0% | |
| !! | TTAAAATAAATAAAAACAAA+GGG | + | chr7_2:2747624-2747643 | None:intergenic | 5.0% |
| !!! | TTTAAAATAAATAAAAACAA+AGG | + | chr7_2:2747625-2747644 | None:intergenic | 5.0% |
| GTTCGTCCGTCGGTAAAACT+CGG | - | chr7_2:2743363-2743382 | Msa1044430:three_prime_UTR | 50.0% | |
| ! | GCTGAACCGAGTTTTACCGA+CGG | + | chr7_2:2743372-2743391 | None:intergenic | 50.0% |
| ! | TCCCAAACAAGTTGAGGAGC+AGG | + | chr7_2:2743585-2743604 | None:intergenic | 50.0% |
| GCACCATCAAGTCTAGGAAC+AGG | + | chr7_2:2743624-2743643 | None:intergenic | 50.0% | |
| ! | TGTGGAAAAGTGGGGTGTCT+GGG | + | chr7_2:2744039-2744058 | None:intergenic | 50.0% |
| ! | ATGTGGAAAAGTGGGGTGTC+TGG | + | chr7_2:2744040-2744059 | None:intergenic | 50.0% |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | + | chr7_2:2744594-2744613 | None:intergenic | 50.0% |
| !! | CCTCACAAGTCGGTTTTGTG+GGG | + | chr7_2:2744604-2744623 | None:intergenic | 50.0% |
| !! | CACCTCACAAGTCGGTTTTG+TGG | + | chr7_2:2744606-2744625 | None:intergenic | 50.0% |
| !! | CAAAACCGACTTGTGAGGTG+AGG | - | chr7_2:2744606-2744625 | Msa1044430:intron | 50.0% |
| GTAGTCCTCACCTCACAAGT+CGG | + | chr7_2:2744614-2744633 | None:intergenic | 50.0% | |
| CAGTATGGCCCACAATGTAG+AGG | - | chr7_2:2745246-2745265 | Msa1044430:intron | 50.0% | |
| AGGTGGGACCTCTACATTGT+GGG | + | chr7_2:2745257-2745276 | None:intergenic | 50.0% | |
| ! | ACATACCTAGGGACTGGCAA+AGG | + | chr7_2:2745330-2745349 | None:intergenic | 50.0% |
| TAGAGCAGTTGGATGTGCAG+AGG | - | chr7_2:2745638-2745657 | Msa1044430:intron | 50.0% | |
| !! | GATGTGCAGAGGTGTCTGAA+AGG | - | chr7_2:2745649-2745668 | Msa1044430:CDS | 50.0% |
| ! | ATGCACCGGCAACTCAACTT+TGG | - | chr7_2:2746229-2746248 | Msa1044430:intron | 50.0% |
| ! | CCTCTCCAAAGTTGAGTTGC+CGG | + | chr7_2:2746237-2746256 | None:intergenic | 50.0% |
| ! | GGTCGATTGCATGTAATGGG+TGG | - | chr7_2:2746255-2746274 | Msa1044430:intron | 50.0% |
| ACGATCATTGGCCACAACAC+AGG | + | chr7_2:2746636-2746655 | None:intergenic | 50.0% | |
| !! | CACATGCATTGGTGCCATGT+CGG | + | chr7_2:2747425-2747444 | None:intergenic | 50.0% |
| !! | GACATCGGGCAAGTTGATAC+CGG | + | chr7_2:2747488-2747507 | None:intergenic | 50.0% |
| TTGACACAGACACGGACATC+GGG | + | chr7_2:2747502-2747521 | None:intergenic | 50.0% | |
| CCTGGGAAAATCACCAACAC+TGG | + | chr7_2:2747544-2747563 | None:intergenic | 50.0% | |
| !!! | CCAGTGTTGGTGATTTTCCC+AGG | - | chr7_2:2747541-2747560 | Msa1044430:intron | 50.0% |
| ! | GGCTGGTTGTACTTCACTTC+AGG | - | chr7_2:2748190-2748209 | Msa1044430:intron | 50.0% |
| CACTTCAGGACAGAGAGACA+AGG | - | chr7_2:2748204-2748223 | Msa1044430:intron | 50.0% | |
| CCACCCTAACTGTTTGTGTG+TGG | + | chr7_2:2748553-2748572 | None:intergenic | 50.0% | |
| CCACACACAAACAGTTAGGG+TGG | - | chr7_2:2748550-2748569 | Msa1044430:CDS | 50.0% | |
| GTGATCTGCGTCGGACTTCT+AGG | - | chr7_2:2743402-2743421 | Msa1044430:three_prime_UTR | 55.0% | |
| GATCAGAAGTGGGGGTTTGC+AGG | - | chr7_2:2743781-2743800 | Msa1044430:CDS | 55.0% | |
| ! | TGGAAAAGTGGGGTGTCTGG+GGG | + | chr7_2:2744037-2744056 | None:intergenic | 55.0% |
| ! | GTGGAAAAGTGGGGTGTCTG+GGG | + | chr7_2:2744038-2744057 | None:intergenic | 55.0% |
| ! | ATGTGGGAGCTCTAGCCACT+AGG | - | chr7_2:2744065-2744084 | Msa1044430:intron | 55.0% |
| !! | CCCCACAAAACCGACTTGTG+AGG | - | chr7_2:2744601-2744620 | Msa1044430:intron | 55.0% |
| GAGGTGGGACCTCTACATTG+TGG | + | chr7_2:2745258-2745277 | None:intergenic | 55.0% | |
| ! | ACCTAGGGACTGGCAAAGGA+GGG | + | chr7_2:2745326-2745345 | None:intergenic | 55.0% |
| ! | TACCTAGGGACTGGCAAAGG+AGG | + | chr7_2:2745327-2745346 | None:intergenic | 55.0% |
| ! | CCGGCAACTCAACTTTGGAG+AGG | - | chr7_2:2746234-2746253 | Msa1044430:intron | 55.0% |
| AGTGAGATACCCATTCCCCG+TGG | - | chr7_2:2746363-2746382 | Msa1044430:intron | 55.0% | |
| TAAGTGCTCACGCAGGATGG+AGG | - | chr7_2:2746715-2746734 | Msa1044430:CDS | 55.0% | |
| TCCCTCCTTTGCCAGTCCCT+AGG | - | chr7_2:2745322-2745341 | Msa1044430:CDS | 60.0% | |
| GAGATACCCATTCCCCGTGG+AGG | - | chr7_2:2746366-2746385 | Msa1044430:intron | 60.0% | |
| TGAGGTCCTCCACGGGGAAT+GGG | + | chr7_2:2746375-2746394 | None:intergenic | 60.0% | |
| AACCTGTGAGGTCCTCCACG+GGG | + | chr7_2:2746381-2746400 | None:intergenic | 60.0% | |
| GAACCTGTGAGGTCCTCCAC+GGG | + | chr7_2:2746382-2746401 | None:intergenic | 60.0% | |
| CGAACCTGTGAGGTCCTCCA+CGG | + | chr7_2:2746383-2746402 | None:intergenic | 60.0% | |
| GTGAGGTCCTCCACGGGGAA+TGG | + | chr7_2:2746376-2746395 | None:intergenic | 65.0% | |
| TTCCCCGTGGAGGACCTCAC+AGG | - | chr7_2:2746376-2746395 | Msa1044430:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 2743360 | 2748682 | 2743360 | ID=Msa1044430;Name=Msa1044430 |
| chr7_2 | mRNA | 2743360 | 2748682 | 2743360 | ID=Msa1044430-mRNA-1;Parent=Msa1044430;Name=Msa1044430-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.8|0.83|1|1|1|6|385|398 |
| chr7_2 | exon | 2743360 | 2743915 | 2743360 | ID=Msa1044430-mRNA-1:exon:715;Parent=Msa1044430-mRNA-1 |
| chr7_2 | exon | 2744976 | 2745182 | 2744976 | ID=Msa1044430-mRNA-1:exon:714;Parent=Msa1044430-mRNA-1 |
| chr7_2 | exon | 2745306 | 2745411 | 2745306 | ID=Msa1044430-mRNA-1:exon:713;Parent=Msa1044430-mRNA-1 |
| chr7_2 | exon | 2745645 | 2745815 | 2745645 | ID=Msa1044430-mRNA-1:exon:712;Parent=Msa1044430-mRNA-1 |
| chr7_2 | exon | 2746699 | 2746928 | 2746699 | ID=Msa1044430-mRNA-1:exon:711;Parent=Msa1044430-mRNA-1 |
| chr7_2 | exon | 2748371 | 2748682 | 2748371 | ID=Msa1044430-mRNA-1:exon:710;Parent=Msa1044430-mRNA-1 |
| chr7_2 | CDS | 2748371 | 2748682 | 2748371 | ID=Msa1044430-mRNA-1:cds;Parent=Msa1044430-mRNA-1 |
| chr7_2 | CDS | 2746699 | 2746928 | 2746699 | ID=Msa1044430-mRNA-1:cds;Parent=Msa1044430-mRNA-1 |
| chr7_2 | CDS | 2745645 | 2745815 | 2745645 | ID=Msa1044430-mRNA-1:cds;Parent=Msa1044430-mRNA-1 |
| chr7_2 | CDS | 2745306 | 2745411 | 2745306 | ID=Msa1044430-mRNA-1:cds;Parent=Msa1044430-mRNA-1 |
| chr7_2 | CDS | 2744976 | 2745182 | 2744976 | ID=Msa1044430-mRNA-1:cds;Parent=Msa1044430-mRNA-1 |
| chr7_2 | CDS | 2743745 | 2743915 | 2743745 | ID=Msa1044430-mRNA-1:cds;Parent=Msa1044430-mRNA-1 |
| chr7_2 | three_prime_UTR | 2743360 | 2743744 | 2743360 | ID=Msa1044430-mRNA-1:three_prime_utr;Parent=Msa1044430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
