AlfalfaGEDB | Msa0202830

M. sativa cultivar zhongmu-4 / Msa0202830

KEGG: -
GO: GO:0006810 GO:0006928 GO:0006996 GO:0007097 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009987 GO:0016043 GO:0019750 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0071840 GO:0099515
PFAM: PF10358.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202830	XP_013463492.2	89.392	1282	54	7	1	1235	1	1247	0.0	2196

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202830	sp\|F4K5K6\|PMIR1_ARATH	54.232	697	267	16	551	1228	500	1163	0.0	609
Msa0202830	sp\|F4K5K6\|PMIR1_ARATH	50.000	354	153	6	10	357	3	338	5.09e-94	331

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202830	A0A072V6S3	91.620	1241	51	8	1	1235	1	1194	0.0	2191

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003220	Msa0202830	0.825030	5.853682e-54	-8.615850e-47
Msa0003270	Msa0202830	0.803118	4.060681e-49	-8.615850e-47
Msa0008410	Msa0202830	0.820220	7.695317e-53	-8.615850e-47
Msa0010770	Msa0202830	0.824248	8.946895e-54	-8.615850e-47
Msa0027390	Msa0202830	0.815231	1.027611e-51	-8.615850e-47
Msa0039250	Msa0202830	0.815600	8.505837e-52	-8.615850e-47
Msa0070430	Msa0202830	0.813163	2.941839e-51	-8.615850e-47
Msa0096580	Msa0202830	0.808288	3.333842e-50	-8.615850e-47
Msa0108870	Msa0202830	0.814444	1.535757e-51	-8.615850e-47
Msa0117910	Msa0202830	0.800331	1.515068e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202830	MtrunA17_Chr2g0300211	91.620	1241	51	8	1	1235	1	1194	0.0	2191
Msa0202830	MtrunA17_Chr4g0070741	58.897	798	295	15	446	1234	303	1076	0.0	846
Msa0202830	MtrunA17_Chr4g0070741	48.322	447	145	7	19	464	10	371	2.92e-102	349
Msa0202830	MtrunA17_Chr1g0150791	41.061	358	171	11	1	344	2	333	2.37e-61	229
Msa0202830	MtrunA17_Chr6g0483131	35.329	167	105	1	81	244	113	279	3.54e-30	129
Msa0202830	MtrunA17_Chr6g0483131	30.928	194	112	6	745	929	514	694	2.41e-18	91.3
Msa0202830	MtrunA17_Chr8g0392621	34.463	177	110	3	70	243	120	293	4.54e-28	122
Msa0202830	MtrunA17_Chr8g0392621	23.975	488	227	17	745	1221	535	889	8.74e-23	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202830	AT5G20610.1	54.232	697	267	16	551	1228	500	1163	0.0	609
Msa0202830	AT5G20610.1	50.000	354	153	6	10	357	3	338	5.17e-95	331
Msa0202830	AT5G26160.2	34.970	672	317	16	571	1235	418	976	2.18e-85	300
Msa0202830	AT5G26160.2	41.745	321	136	9	21	335	17	292	3.50e-60	225
Msa0202830	AT5G26160.1	34.970	672	317	16	571	1235	418	976	2.18e-85	300
Msa0202830	AT5G26160.1	41.745	321	136	9	21	335	17	292	3.50e-60	225
Msa0202830	AT5G26160.3	35.580	638	294	15	571	1204	418	942	1.02e-84	298
Msa0202830	AT5G26160.3	41.745	321	136	9	21	335	17	292	2.49e-60	225
Msa0202830	AT1G42550.1	31.280	211	130	6	77	282	114	314	7.37e-26	115
Msa0202830	AT1G42550.1	28.185	259	165	8	680	934	461	702	1.09e-15	83.2

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Find 320 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTCAATGCAGGCAA+AGG	0.577233	2_1:+25677201	Msa0202830:CDS
AAACAAACTCTGAGCCTGTG+TGG	0.720121	2_1:-25677572	None:intergenic
AAACTCTGAGCCTGTGTGGT+TGG	0.577806	2_1:-25677568	None:intergenic
AAACTTAGGTTGCAAACTTG+TGG	0.568164	2_1:+25678900	Msa0202830:three_prime_UTR
AAAGGCTCCGGCAGAAAATG+CGG	0.629934	2_1:+25678005	Msa0202830:CDS
AAAGTGGTAAGAAGAGTAGT+GGG	0.525318	2_1:+25674785	Msa0202830:CDS
AACAAAATAAATCAATTTCT+AGG	0.316925	2_1:-25678674	None:intergenic
AACACCAGCGCGGCAAAAGA+TGG	0.519605	2_1:+25675501	Msa0202830:CDS
AACATCGAGTTGATCTTACG+AGG	0.703864	2_1:+25675346	Msa0202830:CDS
AACATTGTTGCACAATCCAT+TGG	0.433367	2_1:+25677696	Msa0202830:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTTAGAGAGAGAAAACAA+AGG	+	chr2_1:25674173-25674192	Msa0202830:five_prime_UTR	30.0%
AGAAGGATAAAAGGTCTATA+TGG	+	chr2_1:25675001-25675020	Msa0202830:CDS	30.0%
CTTCATGTACATTTGATTGA+AGG	+	chr2_1:25675087-25675106	Msa0202830:CDS	30.0%
ACTTATACTTGTTCGGTTTA+TGG	+	chr2_1:25675228-25675247	Msa0202830:CDS	30.0%
GTTAAACAAAGACAGTTTGA+TGG	+	chr2_1:25675585-25675604	Msa0202830:CDS	30.0%
GTTTACAAAACTATAGCAGT+CGG	+	chr2_1:25675634-25675653	Msa0202830:CDS	30.0%
AATTGAACCTGTTAAAGTAG+AGG	+	chr2_1:25676103-25676122	Msa0202830:CDS	30.0%
GATTTGAATTCTGCAACTTT+AGG	-	chr2_1:25676485-25676504	None:intergenic	30.0%
AATTGAAAAACTCTCAATGC+AGG	+	chr2_1:25677195-25677214	Msa0202830:CDS	30.0%
TTGCAGCATGATTCAATAAT+AGG	+	chr2_1:25677459-25677478	Msa0202830:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	25674156	25678955	25674156	ID=Msa0202830;Name=Msa0202830
chr2_1	mRNA	25674156	25678955	25674156	ID=Msa0202830-mRNA-1;Parent=Msa0202830;Name=Msa0202830-mRNA-1;_AED=0.04;_eAED=0.04;_QI=194\|1\|1\|1\|0.33\|0.25\|4\|342\|1235
chr2_1	exon	25674156	25674280	25674156	ID=Msa0202830-mRNA-1:exon:9760;Parent=Msa0202830-mRNA-1
chr2_1	exon	25674361	25674426	25674361	ID=Msa0202830-mRNA-1:exon:9761;Parent=Msa0202830-mRNA-1
chr2_1	exon	25674763	25677308	25674763	ID=Msa0202830-mRNA-1:exon:9762;Parent=Msa0202830-mRNA-1
chr2_1	exon	25677449	25678955	25677449	ID=Msa0202830-mRNA-1:exon:9763;Parent=Msa0202830-mRNA-1
chr2_1	five_prime_UTR	25674156	25674280	25674156	ID=Msa0202830-mRNA-1:five_prime_utr;Parent=Msa0202830-mRNA-1
chr2_1	five_prime_UTR	25674361	25674426	25674361	ID=Msa0202830-mRNA-1:five_prime_utr;Parent=Msa0202830-mRNA-1
chr2_1	five_prime_UTR	25674763	25674765	25674763	ID=Msa0202830-mRNA-1:five_prime_utr;Parent=Msa0202830-mRNA-1
chr2_1	CDS	25674766	25677308	25674766	ID=Msa0202830-mRNA-1:cds;Parent=Msa0202830-mRNA-1
chr2_1	CDS	25677449	25678613	25677449	ID=Msa0202830-mRNA-1:cds;Parent=Msa0202830-mRNA-1
chr2_1	three_prime_UTR	25678614	25678955	25678614	ID=Msa0202830-mRNA-1:three_prime_utr;Parent=Msa0202830-mRNA-1

Gene Sequence

>Msa0202830

ATGATGTTGTCGAGAATGGAAAGTGGTAAGAAGAGTAGTGGGGTTTCTGGTAGTCAGAAGAAATTGTTAAAGGATGTTGAAACTATGAATAAAGCTATGTACTTGGATAGAAGTGCTTCGAGGAATTCGGTGTCTGGTTCGAATTCGAGGTCTAAAACTGGTGGAAAATCGTTGTTTCCTGATCCGAAACCGAGGGGTAAAGGAAGTAATAGTAATGATGATAATGATGGTTTGCAGAAGGATAAAAGGTCTATATGGAATTGGAGACCGTTGAAGGCGCTTTCGCATATCCGAAATAAGAGGTTTAATTGTAGTTTTTATCTTCATGTACATTTGATTGAAGGGATGCCTTCTACTTTTGATGGTTCGAGTTTTTCGGTGTATTGGAAGAGGAGGGACGGGGTTTTGGTGACTCGTCCGGCTAAGGTGGTTCAGTGTGTGGCTGAATTTGATGAGAAGTTGACTTATACTTGTTCGGTTTATGGAAGTAGGAGTGGACCTCACCATTCTGCGAAGTATGAAGCAAAGCATTTTTTGCTTTATGCTTCGCTTCTCAGTGCGCCGGAGCTTGATTTGGGGAAACATCGAGTTGATCTTACGAGGTTGCTTCCTCTCACTTTGGAGGAGCTTGAGGAGGAGAAGAGCTCGGGGAAGTGGACTACAAGTTTCAGGTTATCGGGAAAGGCTAAGGGTGCCGTGATGAATGTCAGTTTTGGGTATACGGTTGTTGGTGATAACACCAGCGCGGCAAAAGATGGCCATAATGCTCCTAATGTGTTGACTTCGAGGCAGAATAGTCTTGCGTTGACGAAGCCAGATGTTAAACAAAGACAGTTTGATGGAAGCAGCAGCATGAGGCGGGCCGGAAGTTTACAAAACTATAGCAGTCGGTACTCGTCTCAAGCTGCGGAAGAGGTAAAGGATCTTCACGAGGTGTTGCCATCGTCTAAGTCTGCACTAGCCAGCTCAATAGGCGTCTTATATAAGAAATTCGATGAAGAAAATGCGTGCAGCTCTCTGGACAATGAATCTGATCCTGATTTGTCAAAAGAAAATCTCGAGCCAATCAAACCAGATGGATATACTTCCTCTGATATCAGAAAAGAAACGCCTGAAGTGCATGCATCTGATATCAGAAAAGAAACGCCTGAAGTGCATGCAGTTAACGATGGAAATACATGTCCAGTGCTTGACACACCTGAACTTGATGCATTTCATGAAAACCTAGAAACAGATAAGCCAGATGGCTGCCTTTTACTTGATTCTGGAAAAGAAAACCCTGAAGACCGTCAAGATAATGAATTTTTTGTTGTTGATAAGGGTATAGAAATGTCATCAATTGAACCTGTTAAAGTAGAGGAGTCATTCTCAAAGGCTTCTGAAGATACTTCTACAGTTGATAGTACTTTTACCTATGATACTGCAGGCTTAAAAGTATCTTCTGGAGATAGTTTGATACACAATTCTCTTGATGAGGCAAATGATGGTTGTAAGGATCAGTCAGTGATAGATGAATCCGCTTACAAAGAGGATGAATCTTCTGGAGATAGTTTGATACACGATTCTCTTGATGAGGCAAATGATGGTTGTAAGGATCAGTCAGTGGTAGATGAATCTGCTTACAGAGAGGATGACTTATTCACAAATGAACTGCTGCAAGAATTAGAATCAGCTATAAATAGTGTCTCAGATTTCGAGACAGCGGCTCTAGAATCTCCTAAAGTTGCAGAATTCAAATCTGAATATAAGATGAGAAAGACACATAGCTTTGATGATGTTACAGAATCGGTTGCAAATGAGTTTTTAAGCATGCTAGACACAGCCCATAGTCCAGCAGGCTCGGATTCTGAAAACGAGCCGGAGTCTCCGAGAGAGCTTCTCTTAAGACAGTTTGAGAAGGAAGCCCTAGATGGGGGCTTCTCTTTATTTGATTTTGATATGGACTGTGAGGATGAAGCTGATGATGGCTATGATGCTTCTAATGGCTCTGAGCAGTGGAATTTCTCTGAGGGTATGCACTCATCATCCTTGTTCCAAGACCTTCAGAAGGAGCATCTCGTTGAGTCTCAAGATGTGAGGGGAAAACAAAGGGCTCAAATGCTAGAAGATTTGGAAACAGAAGCCTTAATGCGTCAATGGGGTTTGAACGAGAAGGCTTTTCATCATTCTCCACCAAAAGATTGTACCGGTTTCGGAAGTCCAATTCAATTACCACCTGAAGAGCTTCCTACGTTGCCTCCTCTTGCCGAGGGGTTGGGCCCTTTTCTTCAGACAAAAGACGGAGGCTATCTACGATCTATGGATCCCTCAATTTTCAAGAATACCAAAGCTAGTGGGAGTTTAATCATGCAGGTTTCCAACCCTGTTGTTGTACCTGCAGAAATGGGTTCCGGGATAATGGAAGTTTTACAGTGTTTGGCTTCAGTTGGAATTGAAAAACTCTCAATGCAGGCAAAGGAGTTAATGCCACTGGAAGATATCACGGGGAAGACAATACAACAAGTAGCATGGGAAGCTATGCCTGCCTTAGAAGGAACAGAAAGGCAATGTCATTTGCAGCATGATTCAATAATAGGTCAAGATACAACTTTTGCGCAAAAGGACTTGAAAGGAACACCACCATCTGGACTGAAGTCCAGCAATTTCAATTCAAATTCGGTGGCCAACCACACAGGCTCAGAGTTTGTTTCAATTGAAGATCTTGCACCGTTGGCTATGAACAAAATCGAAGCACTTTCAATGGAGGGATTGAGAATACAATCTGGGATGTCCGAGGAGGATGCACCATCTAACATTGTTGCACAATCCATTGGGGAAATGTCAGCTCTGCAAGGCAAAGGCATTGATATTAACGGCTCCCTCGGCATGGAAGGGGCTGCTGGTTTGCAGCTGATGGATGTAAAAGACAGCAGTGATGTTGGTGTTGATGGGATAATGAGCCTATCGTTAACTCTTGATGAGTGGATGAAGCTGGATTCTGGTGACATTGACGATGTAGATAATATCAGTGAGCATACTTCGAAACTTCTTGCAGCCCATCATGCTAACTCTTTCGACTTTATCCGTGGGAGTTCAAAGGGAGGAGTTAGGAGACGAGGCAAAGGCTCCGGCAGAAAATGCGGTTTGCTAGGAAACAATTTCACAGTAGCGTTAATGGTGCAGCTCCGTGATCCTCTGAGAAATTATGAGCCAGTTGGAACACCAATGCTTGCTCTTATACAAGTTGAGAGAGAGTTTGTCATGCCGAAGCAAAAAATATTTTGTAGTGTGTCCGAGTTACGTAACAACGACGACAAGGATGATGAGGAGAGCGAAATAGTAGCAAAGATGGAGGACGCAAATAAAGAGGAGAAAATTTCTGAAGCAGAACTCATTCCTCAGTTCAAGATTACTGAAGTTCATGTGGCAGGTCTTACACCTGAGCCTCAGAAAAAGAAGCTTTGGGGCACCTCGACGCAGCAACAATCTGGTTCACGCTGGTTGCTTGCTAATGGAATGGGGAAGAACAATAATAATAAGTTTCAACCAATGAAGTCAAAAGCTGCATCTAAATCGATTGCTCCGGTTACCACAAAGGCACAACCTGCTGCCACTTTGTGGAGCATTTCTTCACGCATATTTGGAAAAGCGAAAGAACCGGAAACACTAAATCCACATATAAGAAACCCTAATGTCATTATACCAAATGACACTAATAGACTTAGTTGA

Protein sequence

>Msa0202830

MMLSRMESGKKSSGVSGSQKKLLKDVETMNKAMYLDRSASRNSVSGSNSRSKTGGKSLFPDPKPRGKGSNSNDDNDGLQKDKRSIWNWRPLKALSHIRNKRFNCSFYLHVHLIEGMPSTFDGSSFSVYWKRRDGVLVTRPAKVVQCVAEFDEKLTYTCSVYGSRSGPHHSAKYEAKHFLLYASLLSAPELDLGKHRVDLTRLLPLTLEELEEEKSSGKWTTSFRLSGKAKGAVMNVSFGYTVVGDNTSAAKDGHNAPNVLTSRQNSLALTKPDVKQRQFDGSSSMRRAGSLQNYSSRYSSQAAEEVKDLHEVLPSSKSALASSIGVLYKKFDEENACSSLDNESDPDLSKENLEPIKPDGYTSSDIRKETPEVHASDIRKETPEVHAVNDGNTCPVLDTPELDAFHENLETDKPDGCLLLDSGKENPEDRQDNEFFVVDKGIEMSSIEPVKVEESFSKASEDTSTVDSTFTYDTAGLKVSSGDSLIHNSLDEANDGCKDQSVIDESAYKEDESSGDSLIHDSLDEANDGCKDQSVVDESAYREDDLFTNELLQELESAINSVSDFETAALESPKVAEFKSEYKMRKTHSFDDVTESVANEFLSMLDTAHSPAGSDSENEPESPRELLLRQFEKEALDGGFSLFDFDMDCEDEADDGYDASNGSEQWNFSEGMHSSSLFQDLQKEHLVESQDVRGKQRAQMLEDLETEALMRQWGLNEKAFHHSPPKDCTGFGSPIQLPPEELPTLPPLAEGLGPFLQTKDGGYLRSMDPSIFKNTKASGSLIMQVSNPVVVPAEMGSGIMEVLQCLASVGIEKLSMQAKELMPLEDITGKTIQQVAWEAMPALEGTERQCHLQHDSIIGQDTTFAQKDLKGTPPSGLKSSNFNSNSVANHTGSEFVSIEDLAPLAMNKIEALSMEGLRIQSGMSEEDAPSNIVAQSIGEMSALQGKGIDINGSLGMEGAAGLQLMDVKDSSDVGVDGIMSLSLTLDEWMKLDSGDIDDVDNISEHTSKLLAAHHANSFDFIRGSSKGGVRRRGKGSGRKCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVEREFVMPKQKIFCSVSELRNNDDKDDEESEIVAKMEDANKEEKISEAELIPQFKITEVHVAGLTPEPQKKKLWGTSTQQQSGSRWLLANGMGKNNNNKFQPMKSKAASKSIAPVTTKAQPAATLWSISSRIFGKAKEPETLNPHIRNPNVIIPNDTNRLS*