Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1193730 | XP_004509834.1 | 68.000 | 300 | 60 | 5 | 9 | 284 | 27 | 314 | 6.06e-129 | 388 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1193730 | sp|Q9SU63|AL2B4_ARATH | 58.224 | 304 | 91 | 5 | 5 | 284 | 22 | 313 | 3.44e-110 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015750 | Msa1193730 | 0.805109 | 1.564637e-49 | -8.615850e-47 |
| Msa0102070 | Msa1193730 | 0.850593 | 1.536321e-60 | -8.615850e-47 |
| Msa0636170 | Msa1193730 | 0.819744 | 9.886649e-53 | -8.615850e-47 |
| Msa0678930 | Msa1193730 | 0.803863 | 2.845350e-49 | -8.615850e-47 |
| Msa0725850 | Msa1193730 | 0.805391 | 1.365563e-49 | -8.615850e-47 |
| Msa0726140 | Msa1193730 | 0.837009 | 6.693973e-57 | -8.615850e-47 |
| Msa0729800 | Msa1193730 | 0.802198 | 6.287338e-49 | -8.615850e-47 |
| Msa0743810 | Msa1193730 | 0.849721 | 2.696796e-60 | -8.615850e-47 |
| Msa0745060 | Msa1193730 | 0.853044 | 3.099405e-61 | -8.615850e-47 |
| Msa0767720 | Msa1193730 | 0.801112 | 1.050102e-48 | -8.615850e-47 |
| Msa0777870 | Msa1193730 | 0.815684 | 8.149442e-52 | -8.615850e-47 |
| Msa0783160 | Msa1193730 | 0.845637 | 3.586344e-59 | -8.615850e-47 |
| Msa0808010 | Msa1193730 | 0.822072 | 2.880893e-53 | -8.615850e-47 |
| Msa0808020 | Msa1193730 | 0.817499 | 3.194297e-52 | -8.615850e-47 |
| Msa0811270 | Msa1193730 | 0.811331 | 7.386539e-51 | -8.615850e-47 |
| Msa0825860 | Msa1193730 | 0.859843 | 3.124173e-63 | -8.615850e-47 |
| Msa0145750 | Msa1193730 | 0.812742 | 3.637524e-51 | -8.615850e-47 |
| Msa0153910 | Msa1193730 | 0.811724 | 6.065801e-51 | -8.615850e-47 |
| Msa0227480 | Msa1193730 | 0.822549 | 2.231883e-53 | -8.615850e-47 |
| Msa0232850 | Msa1193730 | 0.814190 | 1.747595e-51 | -8.615850e-47 |
| Msa0384800 | Msa1193730 | 0.805367 | 1.381262e-49 | -8.615850e-47 |
| Msa0414410 | Msa1193730 | 0.826872 | 2.137484e-54 | -8.615850e-47 |
| Msa0414420 | Msa1193730 | 0.850777 | 1.363069e-60 | -8.615850e-47 |
| Msa0436780 | Msa1193730 | 0.802702 | 4.949227e-49 | -8.615850e-47 |
| Msa0450000 | Msa1193730 | 0.813969 | 1.955714e-51 | -8.615850e-47 |
| Msa0450570 | Msa1193730 | 0.817222 | 3.688908e-52 | -8.615850e-47 |
| Msa0451730 | Msa1193730 | 0.808878 | 2.494403e-50 | -8.615850e-47 |
| Msa0452900 | Msa1193730 | 0.863537 | 2.319231e-64 | -8.615850e-47 |
| Msa0452910 | Msa1193730 | 0.815685 | 8.146794e-52 | -8.615850e-47 |
| Msa0453120 | Msa1193730 | 0.821561 | 3.781214e-53 | -8.615850e-47 |
| Msa0981370 | Msa1193730 | 0.834845 | 2.368289e-56 | -8.615850e-47 |
| Msa1016280 | Msa1193730 | 0.845470 | 3.979764e-59 | -8.615850e-47 |
| Msa1025360 | Msa1193730 | 0.864833 | 9.147048e-65 | -8.615850e-47 |
| Msa1025370 | Msa1193730 | 0.828160 | 1.049077e-54 | -8.615850e-47 |
| Msa1044830 | Msa1193730 | 0.839206 | 1.820124e-57 | -8.615850e-47 |
| Msa1044840 | Msa1193730 | 0.869098 | 3.993933e-66 | -8.615850e-47 |
| Msa1060840 | Msa1193730 | 0.814237 | 1.706544e-51 | -8.615850e-47 |
| Msa1092990 | Msa1193730 | 0.829113 | 6.174052e-55 | -8.615850e-47 |
| Msa1100980 | Msa1193730 | 0.872637 | 2.728535e-67 | -8.615850e-47 |
| Msa0267000 | Msa1193730 | 0.849987 | 2.271079e-60 | -8.615850e-47 |
| Msa0267010 | Msa1193730 | 0.878079 | 3.752222e-69 | -8.615850e-47 |
| Msa0304170 | Msa1193730 | 0.810425 | 1.159882e-50 | -8.615850e-47 |
| Msa0342240 | Msa1193730 | 0.832075 | 1.162411e-55 | -8.615850e-47 |
| Msa0360510 | Msa1193730 | 0.826626 | 2.446166e-54 | -8.615850e-47 |
| Msa1109440 | Msa1193730 | 0.833054 | 6.648265e-56 | -8.615850e-47 |
| Msa1121200 | Msa1193730 | 0.840414 | 8.820194e-58 | -8.615850e-47 |
| Msa1135740 | Msa1193730 | 0.865590 | 5.287759e-65 | -8.615850e-47 |
| Msa1146110 | Msa1193730 | 0.830489 | 2.853346e-55 | -8.615850e-47 |
| Msa1149360 | Msa1193730 | 0.804913 | 1.719326e-49 | -8.615850e-47 |
| Msa1187940 | Msa1193730 | 0.821123 | 4.773019e-53 | -8.615850e-47 |
| Msa1187950 | Msa1193730 | 0.836553 | 8.750017e-57 | -8.615850e-47 |
| Msa1192640 | Msa1193730 | 0.847929 | 8.470121e-60 | -8.615850e-47 |
| Msa1193730 | Msa1269670 | 0.837459 | 5.135275e-57 | -8.615850e-47 |
| Msa1193730 | Msa1270230 | 0.844660 | 6.587927e-59 | -8.615850e-47 |
| Msa1193730 | Msa1270240 | 0.835787 | 1.369389e-56 | -8.615850e-47 |
| Msa1193730 | Msa1270270 | 0.822502 | 2.288494e-53 | -8.615850e-47 |
| Msa1193730 | Msa1283330 | 0.839615 | 1.424884e-57 | -8.615850e-47 |
| Msa1193730 | Msa1285930 | 0.845372 | 4.230697e-59 | -8.615850e-47 |
| Msa1193730 | Msa1287800 | 0.853378 | 2.485711e-61 | -8.615850e-47 |
| Msa1193730 | Msa1287810 | 0.860711 | 1.707152e-63 | -8.615850e-47 |
| Msa1193730 | Msa1307890 | 0.807294 | 5.423097e-50 | -8.615850e-47 |
| Msa1193730 | Msa1404000 | 0.823374 | 1.433547e-53 | -8.615850e-47 |
| Msa1193730 | Msa1415310 | 0.824401 | 8.236521e-54 | -8.615850e-47 |
| Msa1193730 | Msa1422180 | 0.808009 | 3.822839e-50 | -8.615850e-47 |
| Msa1193730 | Msa1433120 | 0.847030 | 1.495953e-59 | -8.615850e-47 |
| Msa0485030 | Msa1193730 | 0.830564 | 2.735092e-55 | -8.615850e-47 |
| Msa0564890 | Msa1193730 | 0.814775 | 1.297281e-51 | -8.615850e-47 |
| Msa0846330 | Msa1193730 | 0.830539 | 2.773967e-55 | -8.615850e-47 |
| Msa0846350 | Msa1193730 | 0.821542 | 3.820982e-53 | -8.615850e-47 |
| Msa0865320 | Msa1193730 | 0.844774 | 6.139905e-59 | -8.615850e-47 |
| Msa0872230 | Msa1193730 | 0.801738 | 7.816542e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1193730 | MtrunA17_Chr8g0365221 | 67.128 | 289 | 59 | 5 | 20 | 284 | 40 | 316 | 5.80e-124 | 365 |
| Msa1193730 | MtrunA17_Chr4g0059221 | 59.516 | 289 | 80 | 6 | 20 | 284 | 44 | 319 | 7.49e-105 | 316 |
| Msa1193730 | MtrunA17_Chr3g0117861 | 57.732 | 291 | 86 | 6 | 18 | 284 | 40 | 317 | 1.14e-100 | 305 |
| Msa1193730 | MtrunA17_Chr8g0390631 | 41.727 | 278 | 126 | 5 | 31 | 284 | 4 | 269 | 7.68e-58 | 193 |
| Msa1193730 | MtrunA17_Chr8g0390651 | 41.328 | 271 | 123 | 5 | 38 | 284 | 20 | 278 | 7.32e-56 | 188 |
| Msa1193730 | MtrunA17_Chr6g0485301 | 43.542 | 271 | 117 | 5 | 38 | 284 | 19 | 277 | 5.82e-55 | 186 |
| Msa1193730 | MtrunA17_Chr6g0485311 | 41.455 | 275 | 123 | 6 | 34 | 284 | 15 | 275 | 1.47e-54 | 184 |
| Msa1193730 | MtrunA17_Chr2g0310091 | 35.793 | 271 | 131 | 10 | 40 | 284 | 61 | 314 | 2.21e-28 | 114 |
| Msa1193730 | MtrunA17_Chr4g0059521 | 37.766 | 188 | 99 | 3 | 104 | 284 | 92 | 268 | 8.62e-22 | 95.1 |
| Msa1193730 | MtrunA17_Chr3g0118121 | 35.638 | 188 | 103 | 3 | 104 | 284 | 92 | 268 | 2.30e-21 | 94.0 |
| Msa1193730 | MtrunA17_Chr3g0118081 | 28.720 | 289 | 161 | 7 | 27 | 284 | 24 | 298 | 1.24e-16 | 80.1 |
| Msa1193730 | MtrunA17_Chr8g0384741 | 27.083 | 288 | 172 | 9 | 3 | 286 | 32 | 285 | 1.01e-13 | 71.2 |
| Msa1193730 | MtrunA17_Chr1g0159811 | 35.417 | 144 | 71 | 3 | 147 | 286 | 107 | 232 | 1.13e-12 | 68.2 |
| Msa1193730 | MtrunA17_Chr3g0124811 | 35.417 | 144 | 71 | 3 | 147 | 286 | 109 | 234 | 1.14e-11 | 65.1 |
| Msa1193730 | MtrunA17_Chr2g0300801 | 25.271 | 277 | 165 | 11 | 46 | 295 | 29 | 290 | 2.86e-11 | 63.9 |
| Msa1193730 | MtrunA17_Chr8g0372381 | 32.857 | 140 | 80 | 3 | 147 | 286 | 100 | 225 | 6.32e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1193730 | AT3G48000.1 | 58.224 | 304 | 91 | 5 | 5 | 284 | 22 | 313 | 3.49e-111 | 332 |
| Msa1193730 | AT1G23800.2 | 60.900 | 289 | 77 | 5 | 20 | 284 | 33 | 309 | 7.75e-111 | 327 |
| Msa1193730 | AT1G23800.1 | 60.900 | 289 | 77 | 5 | 20 | 284 | 33 | 309 | 2.44e-109 | 328 |
| Msa1193730 | AT3G24503.1 | 43.060 | 281 | 119 | 7 | 37 | 292 | 16 | 280 | 1.23e-58 | 196 |
| Msa1193730 | AT3G48170.1 | 34.155 | 284 | 146 | 7 | 36 | 289 | 3 | 275 | 4.85e-30 | 119 |
| Msa1193730 | AT1G74920.1 | 33.333 | 276 | 143 | 7 | 42 | 287 | 9 | 273 | 1.08e-25 | 107 |
| Msa1193730 | AT1G74920.2 | 33.455 | 275 | 139 | 7 | 42 | 287 | 9 | 268 | 1.68e-25 | 106 |
| Msa1193730 | AT1G79440.1 | 32.593 | 270 | 141 | 8 | 40 | 284 | 52 | 305 | 5.17e-20 | 90.5 |
| Msa1193730 | AT1G44170.1 | 34.043 | 188 | 94 | 5 | 111 | 286 | 59 | 228 | 2.50e-15 | 76.6 |
| Msa1193730 | AT1G44170.2 | 34.043 | 188 | 94 | 5 | 111 | 286 | 59 | 228 | 2.50e-15 | 76.6 |
| Msa1193730 | AT1G54100.2 | 25.180 | 278 | 165 | 10 | 53 | 300 | 31 | 295 | 1.41e-13 | 71.2 |
| Msa1193730 | AT1G54100.1 | 25.180 | 278 | 165 | 10 | 53 | 300 | 31 | 295 | 1.41e-13 | 71.2 |
| Msa1193730 | AT1G44170.3 | 36.111 | 144 | 70 | 3 | 147 | 286 | 40 | 165 | 4.47e-13 | 69.7 |
Find 68 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTGAAGCCTGCAACTT+TGG | 0.190729 | 8_1:+40205103 | Msa1193730:CDS |
| AATTATAGGTCTTACTATTT+AGG | 0.193146 | 8_1:-40202662 | None:intergenic |
| CTCTCACTTGAATTTGAATA+TGG | 0.206057 | 8_1:-40206271 | None:intergenic |
| ACAGCAGCAGTGCTATATTT+AGG | 0.223166 | 8_1:-40202810 | None:intergenic |
| AACTTCCCTCTTCTCATGTT+TGG | 0.264027 | 8_1:+40204724 | Msa1193730:CDS |
| ACACTCGAAACTTGGGATAA+TGG | 0.272388 | 8_1:+40203740 | Msa1193730:CDS |
| CCACCAAGCTCCAAAGTTGC+AGG | 0.275868 | 8_1:-40205113 | None:intergenic |
| ACTTGGACTGTTGGATTGAT+TGG | 0.292547 | 8_1:-40202846 | None:intergenic |
| CACTCGAAACTTGGGATAAT+GGG | 0.312809 | 8_1:+40203741 | Msa1193730:CDS |
| ATTGCAAATGATGAGATATT+TGG | 0.344314 | 8_1:+40206237 | Msa1193730:CDS |
| GGCATCCTCACAAACAATAA+AGG | 0.344358 | 8_1:-40205144 | None:intergenic |
| TCTTCTCATGTTTGGTTGGA+AGG | 0.351046 | 8_1:+40204732 | Msa1193730:CDS |
| AATACATAGGCTGTCATCTT+AGG | 0.364338 | 8_1:-40203173 | None:intergenic |
| CAGCAGCAGTGCTATATTTA+GGG | 0.366892 | 8_1:-40202809 | None:intergenic |
| CTCATGTTTGGTTGGAAGGT+GGG | 0.379457 | 8_1:+40204736 | Msa1193730:CDS |
| CATGACCAAATTGGTGTTGC+TGG | 0.394533 | 8_1:+40204685 | Msa1193730:CDS |
| AGCTTGCAACACTCGAAACT+TGG | 0.394931 | 8_1:+40203732 | Msa1193730:intron |
| GGTTGGGCAGATAAGATTCA+TGG | 0.404859 | 8_1:+40204619 | Msa1193730:intron |
| AAGCCTGCAACTTTGGAGCT+TGG | 0.414203 | 8_1:+40205110 | Msa1193730:CDS |
| TATGACCAGCAACACCAATT+TGG | 0.414473 | 8_1:-40204690 | None:intergenic |
| TACCAGCATAGTAACGAATT+AGG | 0.425302 | 8_1:-40203811 | None:intergenic |
| TTAAGGTGGGAATGGTTACT+TGG | 0.432203 | 8_1:+40202776 | Msa1193730:intron |
| CTGTTGCAGATCGCTTATAC+AGG | 0.445185 | 8_1:+40205035 | Msa1193730:intron |
| AGAGTTGAGTGTGCTCTACT+TGG | 0.446136 | 8_1:-40202863 | None:intergenic |
| AAATTCGTAGATGCTGCTTC+TGG | 0.448285 | 8_1:+40202897 | Msa1193730:CDS |
| TCCCTCTTCTCATGTTTGGT+TGG | 0.450417 | 8_1:+40204728 | Msa1193730:CDS |
| GCATCCTCACAAACAATAAA+GGG | 0.452404 | 8_1:-40205143 | None:intergenic |
| TTGCTGGTCATATCATTCCT+TGG | 0.455553 | 8_1:+40204701 | Msa1193730:CDS |
| CAAACATTGCATGACCAAAT+TGG | 0.458048 | 8_1:+40204676 | Msa1193730:CDS |
| GAACGCTGGATCCAAGGATA+GGG | 0.468460 | 8_1:+40203057 | Msa1193730:CDS |
| TCTCATGTTTGGTTGGAAGG+TGG | 0.470567 | 8_1:+40204735 | Msa1193730:CDS |
| TCCAGCTGAAAGTCCACATC+AGG | 0.472956 | 8_1:+40204651 | Msa1193730:CDS |
| TCACAAGCAGATTGTTCGTA+TGG | 0.483708 | 8_1:-40203767 | None:intergenic |
| ACACTCAACTCTTAATTGAA+TGG | 0.485424 | 8_1:+40202874 | Msa1193730:CDS |
| ACATTTGTTTAAGGTGGGAA+TGG | 0.487576 | 8_1:+40202768 | Msa1193730:intron |
| TAGTCCCACGGATGTGGATA+AGG | 0.488296 | 8_1:+40204948 | Msa1193730:CDS |
| AAGGCAAAACATTCGATCAA+TGG | 0.492214 | 8_1:+40203144 | Msa1193730:CDS |
| CGAATTAGGCGAACAAGCAT+TGG | 0.493169 | 8_1:-40203797 | None:intergenic |
| CTGCAACTTTGGAGCTTGGT+GGG | 0.493189 | 8_1:+40205114 | Msa1193730:CDS |
| CCTGCAACTTTGGAGCTTGG+TGG | 0.497644 | 8_1:+40205113 | Msa1193730:CDS |
| TCTTGCTAGTCCCACGGATG+TGG | 0.500713 | 8_1:+40204942 | Msa1193730:CDS |
| ACCTGATGTGGACTTTCAGC+TGG | 0.506268 | 8_1:-40204652 | None:intergenic |
| AGAGCCACTTCCCCTATCCT+TGG | 0.507087 | 8_1:-40203068 | None:intergenic |
| GTGTGCTCTACTTGGACTGT+TGG | 0.508888 | 8_1:-40202855 | None:intergenic |
| CATTTCGAACGCTGGATCCA+AGG | 0.521211 | 8_1:+40203051 | Msa1193730:CDS |
| TTGGAAGGTGGGACCAACAT+TGG | 0.529464 | 8_1:+40204747 | Msa1193730:CDS |
| AGGTAAAACATTTCGAACGC+TGG | 0.530464 | 8_1:+40203043 | Msa1193730:intron |
| GGATCCAAGGATAGGGGAAG+TGG | 0.535424 | 8_1:+40203064 | Msa1193730:CDS |
| GCTGTTCCAGCTGCACTCAA+AGG | 0.540009 | 8_1:+40203125 | Msa1193730:CDS |
| TCCAGCGTTGGTGTAACAGC+AGG | 0.550047 | 8_1:+40204913 | Msa1193730:CDS |
| TAAGGTGGGAATGGTTACTT+GGG | 0.565176 | 8_1:+40202777 | Msa1193730:intron |
| TGCAATGTTTGCACCTGATG+TGG | 0.572082 | 8_1:-40204664 | None:intergenic |
| GCTTGCAACACTCGAAACTT+GGG | 0.586331 | 8_1:+40203733 | Msa1193730:intron |
| AAACATTCGATCAATGGCCA+TGG | 0.586737 | 8_1:+40203150 | Msa1193730:CDS |
| ATGAGAAGAGGGAAGTTCCA+AGG | 0.587552 | 8_1:-40204718 | None:intergenic |
| TAGGCTGTCATCTTAGGCCA+TGG | 0.594178 | 8_1:-40203167 | None:intergenic |
| TTCCAACCAAACATGAGAAG+AGG | 0.598002 | 8_1:-40204730 | None:intergenic |
| TCCAACCAAACATGAGAAGA+GGG | 0.598238 | 8_1:-40204729 | None:intergenic |
| GAAGTGGCTCTTGTTGCTGA+AGG | 0.601595 | 8_1:+40203080 | Msa1193730:CDS |
| TGCTGCAAAACTACTTCATG+AGG | 0.604855 | 8_1:+40204828 | Msa1193730:CDS |
| TGATACCTTATCCACATCCG+TGG | 0.621507 | 8_1:-40204953 | None:intergenic |
| AACGCTGGATCCAAGGATAG+GGG | 0.627251 | 8_1:+40203058 | Msa1193730:CDS |
| ATCCGTGGGACTAGCAAGAG+CGG | 0.634650 | 8_1:-40204938 | None:intergenic |
| ACCTGCTGTTACACCAACGC+TGG | 0.636656 | 8_1:-40204914 | None:intergenic |
| GCAGCATACAAAGAAGACAA+TGG | 0.656682 | 8_1:-40204811 | None:intergenic |
| GTGGGACCAACATTGGCATG+TGG | 0.675555 | 8_1:+40204754 | Msa1193730:CDS |
| GATACCTTATCCACATCCGT+GGG | 0.693104 | 8_1:-40204952 | None:intergenic |
| GTGTTGCCACATGCCAATGT+TGG | 0.693388 | 8_1:-40204760 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAATAAATAAATTGG+AGG | - | chr8_1:40202748-40202767 | None:intergenic | 10.0% |
| !!! | ATTTTTTAAACATTTGTTTA+AGG | + | chr8_1:40202759-40202778 | Msa1193730:intron | 10.0% |
| !!! | AGAAATTTCTAAAATATATT+TGG | - | chr8_1:40204504-40204523 | None:intergenic | 10.0% |
| !! | ATAAATTATCCTACAATTAT+AGG | - | chr8_1:40202679-40202698 | None:intergenic | 15.0% |
| !!! | TTTTTTTTGTTTTTTTGTTG+AGG | - | chr8_1:40203421-40203440 | None:intergenic | 15.0% |
| !!! | TTTTGTAACTATGATTTTTT+AGG | + | chr8_1:40203651-40203670 | Msa1193730:intron | 15.0% |
| !!! | GAATGATTTAGTATAATTTT+CGG | + | chr8_1:40204263-40204282 | Msa1193730:intron | 15.0% |
| !! | AATTATAGGTCTTACTATTT+AGG | - | chr8_1:40202665-40202684 | None:intergenic | 20.0% |
| !! | TTATAATTTCTTAGAACAGA+TGG | + | chr8_1:40202703-40202722 | Msa1193730:intron | 20.0% |
| !!! | TTTTAAACATTTGTTTAAGG+TGG | + | chr8_1:40202762-40202781 | Msa1193730:intron | 20.0% |
| !!! | TTTAAACATTTGTTTAAGGT+GGG | + | chr8_1:40202763-40202782 | Msa1193730:intron | 20.0% |
| !! | AGAAAAGAATTTGATGTTTA+TGG | + | chr8_1:40202984-40203003 | Msa1193730:intron | 20.0% |
| !! | AAAAAAAAAAACACTTGAGA+AGG | + | chr8_1:40203434-40203453 | Msa1193730:intron | 20.0% |
| !! | TGCTTCCAAATTAAAATTAT+TGG | + | chr8_1:40203507-40203526 | Msa1193730:intron | 20.0% |
| !!! | GGATACCAATAATTTTAATT+TGG | - | chr8_1:40203515-40203534 | None:intergenic | 20.0% |
| !!! | ACTGCAATTTAAAATAAGTT+TGG | + | chr8_1:40203588-40203607 | Msa1193730:intron | 20.0% |
| !!! | TTGTTTTTAAGAAAATGAGA+AGG | - | chr8_1:40204536-40204555 | None:intergenic | 20.0% |
| !! | TTGTTATAATCGAAATCAAA+TGG | - | chr8_1:40205226-40205245 | None:intergenic | 20.0% |
| !!! | ATTTCAAATAATTTTACCTG+AGG | - | chr8_1:40205521-40205540 | None:intergenic | 20.0% |
| !! | ACACTTACTTTATTAGTATT+AGG | + | chr8_1:40205605-40205624 | Msa1193730:intron | 20.0% |
| !!! | TGAATATGAATTTAGTTTTG+AGG | - | chr8_1:40205669-40205688 | None:intergenic | 20.0% |
| !! | ATACTCATGTATATTAAACA+TGG | + | chr8_1:40205982-40206001 | Msa1193730:intron | 20.0% |
| !!! | TTATATTCTCATCTTTGAAA+AGG | + | chr8_1:40206102-40206121 | Msa1193730:intron | 20.0% |
| !! | AAAGCACAATTAAAAACATT+AGG | - | chr8_1:40206145-40206164 | None:intergenic | 20.0% |
| !!! | TTTTTAATTGTGCTTTGAAA+AGG | + | chr8_1:40206149-40206168 | Msa1193730:intron | 20.0% |
| ! | ATAGTAAGACCTATAATTGT+AGG | + | chr8_1:40202667-40202686 | Msa1193730:intron | 25.0% |
| !! | TTCCTTGTATAGTTACATTT+TGG | + | chr8_1:40202944-40202963 | Msa1193730:intron | 25.0% |
| ! | ATCCAAAATGTAACTATACA+AGG | - | chr8_1:40202949-40202968 | None:intergenic | 25.0% |
| ! | ATGGTATGTTACATTATCAT+TGG | + | chr8_1:40203003-40203022 | Msa1193730:intron | 25.0% |
| ! | TGGAATTCTGTATCATTATT+AGG | + | chr8_1:40203023-40203042 | Msa1193730:intron | 25.0% |
| ! | TATAATGCATCCTAAACAAT+AGG | - | chr8_1:40203223-40203242 | None:intergenic | 25.0% |
| ! | CATAATTTACAGCAATATCA+AGG | - | chr8_1:40203290-40203309 | None:intergenic | 25.0% |
| ! | ATGAATGTAACTACATATGT+TGG | - | chr8_1:40203486-40203505 | None:intergenic | 25.0% |
| !!! | TGATTTTTTAGGAAAGACAA+AGG | + | chr8_1:40203662-40203681 | Msa1193730:intron | 25.0% |
| !!! | CACGGTGTTTTAATAAAAAA+AGG | - | chr8_1:40203923-40203942 | None:intergenic | 25.0% |
| !! | AAATCATTCTTTCTTTTCTC+TGG | - | chr8_1:40204252-40204271 | None:intergenic | 25.0% |
| ! | TATAAATAGAGACACTTTAG+AGG | - | chr8_1:40204351-40204370 | None:intergenic | 25.0% |
| ! | ATATATTTGGAAAGTTGCAA+TGG | - | chr8_1:40204491-40204510 | None:intergenic | 25.0% |
| ! | TGATGAATAGAGAAAAAACA+TGG | + | chr8_1:40204878-40204897 | Msa1193730:CDS | 25.0% |
| !! | TAGAGAAAAAACATGGTTTT+CGG | + | chr8_1:40204885-40204904 | Msa1193730:CDS | 25.0% |
| ! | TACTAATAAAGTAAGTGTCT+TGG | - | chr8_1:40205603-40205622 | None:intergenic | 25.0% |
| ! | GGTTGACAAAAAACTTAATA+AGG | + | chr8_1:40205626-40205645 | Msa1193730:intron | 25.0% |
| !! | ATTAAACATGGTGTTGAAAA+TGG | + | chr8_1:40205994-40206013 | Msa1193730:intron | 25.0% |
| ! | CAAGCACAATTAAAAACATT+AGG | - | chr8_1:40206192-40206211 | None:intergenic | 25.0% |
| ! | ATTGCAAATGATGAGATATT+TGG | + | chr8_1:40206237-40206256 | Msa1193730:CDS | 25.0% |
| AATTTCTTAGAACAGATGGA+TGG | + | chr8_1:40202707-40202726 | Msa1193730:intron | 30.0% | |
| ACACTCAACTCTTAATTGAA+TGG | + | chr8_1:40202874-40202893 | Msa1193730:CDS | 30.0% | |
| GGAATAAAGATGGAATACAT+AGG | - | chr8_1:40203189-40203208 | None:intergenic | 30.0% | |
| AAAGCGAAAAGGAATAAAGA+TGG | - | chr8_1:40203199-40203218 | None:intergenic | 30.0% | |
| AAACAATAGGAAAAGCGAAA+AGG | - | chr8_1:40203210-40203229 | None:intergenic | 30.0% | |
| !! | TTTCGCTTTTCCTATTGTTT+AGG | + | chr8_1:40203210-40203229 | Msa1193730:intron | 30.0% |
| AGTTCCATGATTATGAATTG+TGG | + | chr8_1:40203246-40203265 | Msa1193730:intron | 30.0% | |
| TCAACCACAATTCATAATCA+TGG | - | chr8_1:40203253-40203272 | None:intergenic | 30.0% | |
| ATGATTATGAATTGTGGTTG+AGG | + | chr8_1:40203252-40203271 | Msa1193730:intron | 30.0% | |
| !! | CTTCTAAAACCTTGATATTG+AGG | + | chr8_1:40203352-40203371 | Msa1193730:intron | 30.0% |
| !! | CAATTTTGACCTCAATATCA+AGG | - | chr8_1:40203364-40203383 | None:intergenic | 30.0% |
| AAAAAAACACTTGAGAAGGA+AGG | + | chr8_1:40203438-40203457 | Msa1193730:intron | 30.0% | |
| GTGAAGAAATCTTGATGTTA+TGG | + | chr8_1:40203878-40203897 | Msa1193730:intron | 30.0% | |
| TCTAACTGGATAATTATGCA+CGG | - | chr8_1:40203941-40203960 | None:intergenic | 30.0% | |
| GTTCATCTTCATAATCTTCT+TGG | - | chr8_1:40203996-40204015 | None:intergenic | 30.0% | |
| AATAAATTCCAAAGCATGTG+TGG | + | chr8_1:40204031-40204050 | Msa1193730:intron | 30.0% | |
| ATAAATTCCAAAGCATGTGT+GGG | + | chr8_1:40204032-40204051 | Msa1193730:intron | 30.0% | |
| ATAGAGAAACTTATGTCCTT+TGG | + | chr8_1:40204368-40204387 | Msa1193730:intron | 30.0% | |
| AGTTTCACAAAACAAAGAGA+AGG | - | chr8_1:40204566-40204585 | None:intergenic | 30.0% | |
| TCAATATTTGCACTTGTGTA+TGG | + | chr8_1:40204973-40204992 | Msa1193730:intron | 30.0% | |
| ! | TAGTTCAAGGATAACTTTTC+TGG | - | chr8_1:40205072-40205091 | None:intergenic | 30.0% |
| TATGCATGTACATAATACTC+CGG | - | chr8_1:40205307-40205326 | None:intergenic | 30.0% | |
| TTATTAACTCTCTCTCTTTC+AGG | + | chr8_1:40205386-40205405 | Msa1193730:intron | 30.0% | |
| TATTAACTCTCTCTCTTTCA+GGG | + | chr8_1:40205387-40205406 | Msa1193730:intron | 30.0% | |
| ! | TTGTTCTAACAACTTTGAGA+CGG | - | chr8_1:40205731-40205750 | None:intergenic | 30.0% |
| ATCAGAATACTAATGCATCA+AGG | - | chr8_1:40205892-40205911 | None:intergenic | 30.0% | |
| ! | ACATTTGTTTAAGGTGGGAA+TGG | + | chr8_1:40202768-40202787 | Msa1193730:intron | 35.0% |
| ! | ATACAAGGAAGCACAAATCA+AGG | - | chr8_1:40202934-40202953 | None:intergenic | 35.0% |
| AAGGCAAAACATTCGATCAA+TGG | + | chr8_1:40203144-40203163 | Msa1193730:CDS | 35.0% | |
| AATACATAGGCTGTCATCTT+AGG | - | chr8_1:40203176-40203195 | None:intergenic | 35.0% | |
| ACTACATATGTTGGTATGTC+TGG | - | chr8_1:40203477-40203496 | None:intergenic | 35.0% | |
| TACCAGCATAGTAACGAATT+AGG | - | chr8_1:40203814-40203833 | None:intergenic | 35.0% | |
| TTATGAAGATGAACATGACG+AGG | + | chr8_1:40204002-40204021 | Msa1193730:intron | 35.0% | |
| ! | AGGTATAACCATTTTGCATC+CGG | - | chr8_1:40204103-40204122 | None:intergenic | 35.0% |
| AACTACAATTTCGATACGCT+TGG | - | chr8_1:40204179-40204198 | None:intergenic | 35.0% | |
| CATGAACAAACACTTCCAAA+TGG | - | chr8_1:40204407-40204426 | None:intergenic | 35.0% | |
| !! | TGGAAGTGTTTGTTCATGAA+TGG | + | chr8_1:40204409-40204428 | Msa1193730:intron | 35.0% |
| CAATACACCTTCTCTCTAAA+AGG | + | chr8_1:40204454-40204473 | Msa1193730:intron | 35.0% | |
| !! | ATAGAGACCTTTTAGAGAGA+AGG | - | chr8_1:40204464-40204483 | None:intergenic | 35.0% |
| CAAACATTGCATGACCAAAT+TGG | + | chr8_1:40204676-40204695 | Msa1193730:CDS | 35.0% | |
| ! | AGAAAAAACATGGTTTTCGG+TGG | + | chr8_1:40204888-40204907 | Msa1193730:CDS | 35.0% |
| TAAATCCAGTTTGAACACAC+AGG | - | chr8_1:40205009-40205028 | None:intergenic | 35.0% | |
| ATCTCCCTTTATTGTTTGTG+AGG | + | chr8_1:40205139-40205158 | Msa1193730:intron | 35.0% | |
| GCATCCTCACAAACAATAAA+GGG | - | chr8_1:40205146-40205165 | None:intergenic | 35.0% | |
| ! | TCGAAATCAAATGGAGTATC+TGG | - | chr8_1:40205217-40205236 | None:intergenic | 35.0% |
| AGTGCAATTAATTTCGAGAC+CGG | + | chr8_1:40205285-40205304 | Msa1193730:intron | 35.0% | |
| TGTAAGCTTCTACTTTCAGA+AGG | - | chr8_1:40205561-40205580 | None:intergenic | 35.0% | |
| TACAATCCTCATCTTTCACA+TGG | + | chr8_1:40205577-40205596 | Msa1193730:intron | 35.0% | |
| GTCTCAAAGTTGTTAGAACA+AGG | + | chr8_1:40205730-40205749 | Msa1193730:intron | 35.0% | |
| TCAAAGTTGTTAGAACAAGG+AGG | + | chr8_1:40205733-40205752 | Msa1193730:intron | 35.0% | |
| ! | CCTTTGGAAGTAGAATTTCA+CGG | - | chr8_1:40205760-40205779 | None:intergenic | 35.0% |
| CGTGAAATTCTACTTCCAAA+GGG | + | chr8_1:40205758-40205777 | Msa1193730:intron | 35.0% | |
| ! | TAATGAAGTACTCGTCCTAA+TGG | - | chr8_1:40205837-40205856 | None:intergenic | 35.0% |
| TGAACATTTGAGAAGACAGT+TGG | - | chr8_1:40206073-40206092 | None:intergenic | 35.0% | |
| TTGTGCTTGTAACAATCATC+AGG | + | chr8_1:40206203-40206222 | Msa1193730:intron | 35.0% | |
| TTAAGGTGGGAATGGTTACT+TGG | + | chr8_1:40202776-40202795 | Msa1193730:intron | 40.0% | |
| TAAGGTGGGAATGGTTACTT+GGG | + | chr8_1:40202777-40202796 | Msa1193730:intron | 40.0% | |
| CAGCAGCAGTGCTATATTTA+GGG | - | chr8_1:40202812-40202831 | None:intergenic | 40.0% | |
| ACAGCAGCAGTGCTATATTT+AGG | - | chr8_1:40202813-40202832 | None:intergenic | 40.0% | |
| ACTTGGACTGTTGGATTGAT+TGG | - | chr8_1:40202849-40202868 | None:intergenic | 40.0% | |
| ! | AAATTCGTAGATGCTGCTTC+TGG | + | chr8_1:40202897-40202916 | Msa1193730:CDS | 40.0% |
| AGGTAAAACATTTCGAACGC+TGG | + | chr8_1:40203043-40203062 | Msa1193730:intron | 40.0% | |
| AAACATTCGATCAATGGCCA+TGG | + | chr8_1:40203150-40203169 | Msa1193730:CDS | 40.0% | |
| !!! | GGTTTTAGAAGTCTCTGTAG+TGG | - | chr8_1:40203343-40203362 | None:intergenic | 40.0% |
| TGTTGCATCAACACTTGAGA+AGG | + | chr8_1:40203388-40203407 | Msa1193730:intron | 40.0% | |
| TCATCTTTCGTGTTTGTGTC+TGG | + | chr8_1:40203546-40203565 | Msa1193730:intron | 40.0% | |
| CTGGTTTAGTGCTTCATATG+TGG | + | chr8_1:40203565-40203584 | Msa1193730:intron | 40.0% | |
| ACACTCGAAACTTGGGATAA+TGG | + | chr8_1:40203740-40203759 | Msa1193730:CDS | 40.0% | |
| CACTCGAAACTTGGGATAAT+GGG | + | chr8_1:40203741-40203760 | Msa1193730:CDS | 40.0% | |
| TCACAAGCAGATTGTTCGTA+TGG | - | chr8_1:40203770-40203789 | None:intergenic | 40.0% | |
| ! | GGTATGTCATATGTGCTACT+TGG | + | chr8_1:40203830-40203849 | Msa1193730:intron | 40.0% |
| TATCCAGTTAGAACCTGTGT+TGG | + | chr8_1:40203949-40203968 | Msa1193730:intron | 40.0% | |
| ATCCAGTTAGAACCTGTGTT+GGG | + | chr8_1:40203950-40203969 | Msa1193730:intron | 40.0% | |
| ! | ATAACCATTTTGCATCCGGT+TGG | - | chr8_1:40204099-40204118 | None:intergenic | 40.0% |
| TATACCTGCGAATACTCTTC+AGG | + | chr8_1:40204116-40204135 | Msa1193730:intron | 40.0% | |
| GAATACTCTTCAGGATACGA+TGG | + | chr8_1:40204125-40204144 | Msa1193730:intron | 40.0% | |
| ! | AATAGAGACACTTTAGAGGC+AGG | - | chr8_1:40204347-40204366 | None:intergenic | 40.0% |
| !! | TGGTTGTTTCTCTTCACCAA+AGG | - | chr8_1:40204387-40204406 | None:intergenic | 40.0% |
| GGTGAAGAGAAACAACCATT+TGG | + | chr8_1:40204389-40204408 | Msa1193730:intron | 40.0% | |
| ! | GTATTGCCATATTTTCCCCT+AGG | + | chr8_1:40204598-40204617 | Msa1193730:intron | 40.0% |
| AATCTTATCTGCCCAACCTA+GGG | - | chr8_1:40204617-40204636 | None:intergenic | 40.0% | |
| TATGACCAGCAACACCAATT+TGG | - | chr8_1:40204693-40204712 | None:intergenic | 40.0% | |
| TTGCTGGTCATATCATTCCT+TGG | + | chr8_1:40204701-40204720 | Msa1193730:CDS | 40.0% | |
| AACTTCCCTCTTCTCATGTT+TGG | + | chr8_1:40204724-40204743 | Msa1193730:CDS | 40.0% | |
| TCCAACCAAACATGAGAAGA+GGG | - | chr8_1:40204732-40204751 | None:intergenic | 40.0% | |
| TTCCAACCAAACATGAGAAG+AGG | - | chr8_1:40204733-40204752 | None:intergenic | 40.0% | |
| TCTTCTCATGTTTGGTTGGA+AGG | + | chr8_1:40204732-40204751 | Msa1193730:CDS | 40.0% | |
| GCAGCATACAAAGAAGACAA+TGG | - | chr8_1:40204814-40204833 | None:intergenic | 40.0% | |
| TGCTGCAAAACTACTTCATG+AGG | + | chr8_1:40204828-40204847 | Msa1193730:CDS | 40.0% | |
| AGTAACCTGTGTGTTCAAAC+TGG | + | chr8_1:40205001-40205020 | Msa1193730:intron | 40.0% | |
| ! | TGCTTTTAGCAGCTAGTTCA+AGG | - | chr8_1:40205085-40205104 | None:intergenic | 40.0% |
| ! | CAATTTGAAGCCTGCAACTT+TGG | + | chr8_1:40205103-40205122 | Msa1193730:CDS | 40.0% |
| GGCATCCTCACAAACAATAA+AGG | - | chr8_1:40205147-40205166 | None:intergenic | 40.0% | |
| GAGTATCTGGTTGAAGAACA+AGG | - | chr8_1:40205204-40205223 | None:intergenic | 40.0% | |
| AGATGAACGTGTGTAAGCAA+AGG | + | chr8_1:40205439-40205458 | Msa1193730:intron | 40.0% | |
| !! | TTCTAACAACTTTGAGACGG+TGG | - | chr8_1:40205728-40205747 | None:intergenic | 40.0% |
| CCGTGAAATTCTACTTCCAA+AGG | + | chr8_1:40205757-40205776 | Msa1193730:intron | 40.0% | |
| ! | ATTCTACTTCCAAAGGGCAT+AGG | + | chr8_1:40205764-40205783 | Msa1193730:intron | 40.0% |
| TGGGAGAAAGGGTTAGAAAA+AGG | + | chr8_1:40206033-40206052 | Msa1193730:intron | 40.0% | |
| GGGAGAAAGGGTTAGAAAAA+GGG | + | chr8_1:40206034-40206053 | Msa1193730:intron | 40.0% | |
| AGAGTTGAGTGTGCTCTACT+TGG | - | chr8_1:40202866-40202885 | None:intergenic | 45.0% | |
| GTGGCATTGCAATCACAATG+CGG | - | chr8_1:40203324-40203343 | None:intergenic | 45.0% | |
| GCATCAACACTTGAGAAGGA+AGG | + | chr8_1:40203392-40203411 | Msa1193730:intron | 45.0% | |
| ! | CTTGAGAAGGAAGGTATGTC+CGG | + | chr8_1:40203447-40203466 | Msa1193730:intron | 45.0% |
| ! | TGTTGGTATGTCTGGAACAC+CGG | - | chr8_1:40203469-40203488 | None:intergenic | 45.0% |
| AGCTTGCAACACTCGAAACT+TGG | + | chr8_1:40203732-40203751 | Msa1193730:intron | 45.0% | |
| GCTTGCAACACTCGAAACTT+GGG | + | chr8_1:40203733-40203752 | Msa1193730:intron | 45.0% | |
| CGAATTAGGCGAACAAGCAT+TGG | - | chr8_1:40203800-40203819 | None:intergenic | 45.0% | |
| CGCCTAATTCGTTACTATGC+TGG | + | chr8_1:40203809-40203828 | Msa1193730:intron | 45.0% | |
| !! | TATGTGCTACTTGGTAGTGC+AGG | + | chr8_1:40203839-40203858 | Msa1193730:intron | 45.0% |
| TCCAGTTAGAACCTGTGTTG+GGG | + | chr8_1:40203951-40203970 | Msa1193730:intron | 45.0% | |
| TGTGGGACACACTAACCTTT+AGG | + | chr8_1:40204049-40204068 | Msa1193730:intron | 45.0% | |
| TATGCCAACCGGATGCAAAA+TGG | + | chr8_1:40204092-40204111 | Msa1193730:intron | 45.0% | |
| !! | GTATCCTGAAGAGTATTCGC+AGG | - | chr8_1:40204123-40204142 | None:intergenic | 45.0% |
| GAATGTGCAAGTCACGTCAA+GGG | - | chr8_1:40204153-40204172 | None:intergenic | 45.0% | |
| TGAATGTGCAAGTCACGTCA+AGG | - | chr8_1:40204154-40204173 | None:intergenic | 45.0% | |
| ! | CTTTCTTTTCTCTGGTGCTC+TGG | - | chr8_1:40204244-40204263 | None:intergenic | 45.0% |
| ! | TGCCATATTTTCCCCTAGGT+TGG | + | chr8_1:40204602-40204621 | Msa1193730:intron | 45.0% |
| ! | GCCATATTTTCCCCTAGGTT+GGG | + | chr8_1:40204603-40204622 | Msa1193730:intron | 45.0% |
| ATCTTATCTGCCCAACCTAG+GGG | - | chr8_1:40204616-40204635 | None:intergenic | 45.0% | |
| GAATCTTATCTGCCCAACCT+AGG | - | chr8_1:40204618-40204637 | None:intergenic | 45.0% | |
| GGTTGGGCAGATAAGATTCA+TGG | + | chr8_1:40204619-40204638 | Msa1193730:intron | 45.0% | |
| TGCAATGTTTGCACCTGATG+TGG | - | chr8_1:40204667-40204686 | None:intergenic | 45.0% | |
| !! | CATGACCAAATTGGTGTTGC+TGG | + | chr8_1:40204685-40204704 | Msa1193730:CDS | 45.0% |
| ATGAGAAGAGGGAAGTTCCA+AGG | - | chr8_1:40204721-40204740 | None:intergenic | 45.0% | |
| TCCCTCTTCTCATGTTTGGT+TGG | + | chr8_1:40204728-40204747 | Msa1193730:CDS | 45.0% | |
| TCTCATGTTTGGTTGGAAGG+TGG | + | chr8_1:40204735-40204754 | Msa1193730:CDS | 45.0% | |
| CTCATGTTTGGTTGGAAGGT+GGG | + | chr8_1:40204736-40204755 | Msa1193730:CDS | 45.0% | |
| GATACCTTATCCACATCCGT+GGG | - | chr8_1:40204955-40204974 | None:intergenic | 45.0% | |
| TGATACCTTATCCACATCCG+TGG | - | chr8_1:40204956-40204975 | None:intergenic | 45.0% | |
| CTGTTGCAGATCGCTTATAC+AGG | + | chr8_1:40205035-40205054 | Msa1193730:intron | 45.0% | |
| CTCAACAGCCTGATCTACAT+CGG | - | chr8_1:40205168-40205187 | None:intergenic | 45.0% | |
| GACAACACGTTTCAAAGCGT+GGG | - | chr8_1:40205465-40205484 | None:intergenic | 45.0% | |
| !! | CACGCTTTGAAACGTGTTGT+CGG | + | chr8_1:40205464-40205483 | Msa1193730:intron | 45.0% |
| TGTTGTCGGAGATCCATTCA+AGG | + | chr8_1:40205478-40205497 | Msa1193730:intron | 45.0% | |
| TGCTCTATTCCTGCCTTGAA+TGG | - | chr8_1:40205494-40205513 | None:intergenic | 45.0% | |
| TTCAAGGCAGGAATAGAGCA+AGG | + | chr8_1:40205494-40205513 | Msa1193730:intron | 45.0% | |
| TCTTGGCCATGTGAAAGATG+AGG | - | chr8_1:40205586-40205605 | None:intergenic | 45.0% | |
| CGACTAACTAGTCCACCATT+AGG | + | chr8_1:40205819-40205838 | Msa1193730:intron | 45.0% | |
| ! | TGAAGTACTCGTCCTAATGG+TGG | - | chr8_1:40205834-40205853 | None:intergenic | 45.0% |
| !! | ATGGTGCTACACTTGAAGCT+TGG | + | chr8_1:40206013-40206032 | Msa1193730:intron | 45.0% |
| !! | TGGTGCTACACTTGAAGCTT+GGG | + | chr8_1:40206014-40206033 | Msa1193730:intron | 45.0% |
| ACACTTGAAGCTTGGGAGAA+AGG | + | chr8_1:40206021-40206040 | Msa1193730:intron | 45.0% | |
| CACTTGAAGCTTGGGAGAAA+GGG | + | chr8_1:40206022-40206041 | Msa1193730:intron | 45.0% | |
| !! | TGTTTAAAAAATAAATAAAT+TGG | - | chr8_1:40202751-40202770 | None:intergenic | 5.0% |
| GTGTGCTCTACTTGGACTGT+TGG | - | chr8_1:40202858-40202877 | None:intergenic | 50.0% | |
| CATTTCGAACGCTGGATCCA+AGG | + | chr8_1:40203051-40203070 | Msa1193730:CDS | 50.0% | |
| GAACGCTGGATCCAAGGATA+GGG | + | chr8_1:40203057-40203076 | Msa1193730:CDS | 50.0% | |
| AACGCTGGATCCAAGGATAG+GGG | + | chr8_1:40203058-40203077 | Msa1193730:CDS | 50.0% | |
| GAAGTGGCTCTTGTTGCTGA+AGG | + | chr8_1:40203080-40203099 | Msa1193730:CDS | 50.0% | |
| ! | GTTTTGCCTTTGAGTGCAGC+TGG | - | chr8_1:40203134-40203153 | None:intergenic | 50.0% |
| TAGGCTGTCATCTTAGGCCA+TGG | - | chr8_1:40203170-40203189 | None:intergenic | 50.0% | |
| CGAAAGATGACACTGACACG+TGG | - | chr8_1:40203536-40203555 | None:intergenic | 50.0% | |
| TCAATGTGTCTGCGACTCTG+CGG | + | chr8_1:40203619-40203638 | Msa1193730:intron | 50.0% | |
| ! | GTGCTGCTAATCTGCTTGAG+AGG | + | chr8_1:40203695-40203714 | Msa1193730:intron | 50.0% |
| ! | TCCCCAACACAGGTTCTAAC+TGG | - | chr8_1:40203955-40203974 | None:intergenic | 50.0% |
| AGTGTGTCCCACACATGCTT+TGG | - | chr8_1:40204042-40204061 | None:intergenic | 50.0% | |
| TGGGAGCGAATCGAACCTAA+AGG | - | chr8_1:40204067-40204086 | None:intergenic | 50.0% | |
| ATCCGGTTGGCATAACTGGT+GGG | - | chr8_1:40204086-40204105 | None:intergenic | 50.0% | |
| TTGCATCCGGTTGGCATAAC+TGG | - | chr8_1:40204090-40204109 | None:intergenic | 50.0% | |
| GCCCAACCTAGGGGAAAATA+TGG | - | chr8_1:40204607-40204626 | None:intergenic | 50.0% | |
| TCCAGCTGAAAGTCCACATC+AGG | + | chr8_1:40204651-40204670 | Msa1193730:CDS | 50.0% | |
| ACCTGATGTGGACTTTCAGC+TGG | - | chr8_1:40204655-40204674 | None:intergenic | 50.0% | |
| TTGGAAGGTGGGACCAACAT+TGG | + | chr8_1:40204747-40204766 | Msa1193730:CDS | 50.0% | |
| GTGTTGCCACATGCCAATGT+TGG | - | chr8_1:40204763-40204782 | None:intergenic | 50.0% | |
| ! | TTTTCGGTGGTATCCAGCGT+TGG | + | chr8_1:40204901-40204920 | Msa1193730:CDS | 50.0% |
| TAGTCCCACGGATGTGGATA+AGG | + | chr8_1:40204948-40204967 | Msa1193730:CDS | 50.0% | |
| !! | AAGCCTGCAACTTTGGAGCT+TGG | + | chr8_1:40205110-40205129 | Msa1193730:CDS | 50.0% |
| !! | CTGCAACTTTGGAGCTTGGT+GGG | + | chr8_1:40205114-40205133 | Msa1193730:CDS | 50.0% |
| TGAGGATGCCGATGTAGATC+AGG | + | chr8_1:40205157-40205176 | Msa1193730:intron | 50.0% | |
| AGGGACAATGCTGTTGTGCT+GGG | + | chr8_1:40205406-40205425 | Msa1193730:intron | 50.0% | |
| CGACAACACGTTTCAAAGCG+TGG | - | chr8_1:40205466-40205485 | None:intergenic | 50.0% | |
| AGGAATAGAGCAAGGTCCTC+AGG | + | chr8_1:40205502-40205521 | Msa1193730:intron | 50.0% | |
| CAAAGATCGCCTATGCCCTT+TGG | - | chr8_1:40205776-40205795 | None:intergenic | 50.0% | |
| CGAACGCTGGATCCAAGGAT+AGG | + | chr8_1:40203056-40203075 | Msa1193730:CDS | 55.0% | |
| GGATCCAAGGATAGGGGAAG+TGG | + | chr8_1:40203064-40203083 | Msa1193730:CDS | 55.0% | |
| AGAGCCACTTCCCCTATCCT+TGG | - | chr8_1:40203071-40203090 | None:intergenic | 55.0% | |
| GCTGTTCCAGCTGCACTCAA+AGG | + | chr8_1:40203125-40203144 | Msa1193730:CDS | 55.0% | |
| GCAGAGTCGCAGACACATTG+AGG | - | chr8_1:40203620-40203639 | None:intergenic | 55.0% | |
| TTGCAGCAGATCCCCAACAC+AGG | - | chr8_1:40203965-40203984 | None:intergenic | 55.0% | |
| CTCCCACCAGTTATGCCAAC+CGG | + | chr8_1:40204081-40204100 | Msa1193730:intron | 55.0% | |
| CATCCGGTTGGCATAACTGG+TGG | - | chr8_1:40204087-40204106 | None:intergenic | 55.0% | |
| GTGGGACCAACATTGGCATG+TGG | + | chr8_1:40204754-40204773 | Msa1193730:CDS | 55.0% | |
| !! | TCCAGCGTTGGTGTAACAGC+AGG | + | chr8_1:40204913-40204932 | Msa1193730:CDS | 55.0% |
| ACCTGCTGTTACACCAACGC+TGG | - | chr8_1:40204917-40204936 | None:intergenic | 55.0% | |
| ! | ATCCGTGGGACTAGCAAGAG+CGG | - | chr8_1:40204941-40204960 | None:intergenic | 55.0% |
| TCTTGCTAGTCCCACGGATG+TGG | + | chr8_1:40204942-40204961 | Msa1193730:CDS | 55.0% | |
| CCACCAAGCTCCAAAGTTGC+AGG | - | chr8_1:40205116-40205135 | None:intergenic | 55.0% | |
| !! | CCTGCAACTTTGGAGCTTGG+TGG | + | chr8_1:40205113-40205132 | Msa1193730:CDS | 55.0% |
| CAGGGACAATGCTGTTGTGC+TGG | + | chr8_1:40205405-40205424 | Msa1193730:intron | 55.0% | |
| GTCGGAGATCCATTCAAGGC+AGG | + | chr8_1:40205482-40205501 | Msa1193730:intron | 55.0% | |
| GACGGTGGCTTGATCGTTGT+TGG | - | chr8_1:40205713-40205732 | None:intergenic | 55.0% | |
| TCTCTGGTGCTCTGGTGCTC+TGG | - | chr8_1:40204236-40204255 | None:intergenic | 60.0% | |
| TGCCGCTCTTGCTAGTCCCA+CGG | + | chr8_1:40204936-40204955 | Msa1193730:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 40202645 | 40206290 | 40202645 | ID=Msa1193730;Name=Msa1193730 |
| chr8_1 | mRNA | 40202645 | 40206290 | 40202645 | ID=Msa1193730-mRNA-1;Parent=Msa1193730;Name=Msa1193730-mRNA-1;_AED=0.24;_eAED=0.27;_QI=0|0|0|0.85|1|1|7|0|305 |
| chr8_1 | exon | 40202645 | 40202669 | 40202645 | ID=Msa1193730-mRNA-1:exon:13105;Parent=Msa1193730-mRNA-1 |
| chr8_1 | exon | 40202781 | 40202918 | 40202781 | ID=Msa1193730-mRNA-1:exon:13106;Parent=Msa1193730-mRNA-1 |
| chr8_1 | exon | 40203045 | 40203190 | 40203045 | ID=Msa1193730-mRNA-1:exon:13107;Parent=Msa1193730-mRNA-1 |
| chr8_1 | exon | 40203734 | 40203818 | 40203734 | ID=Msa1193730-mRNA-1:exon:13108;Parent=Msa1193730-mRNA-1 |
| chr8_1 | exon | 40204620 | 40204969 | 40204620 | ID=Msa1193730-mRNA-1:exon:13109;Parent=Msa1193730-mRNA-1 |
| chr8_1 | exon | 40205044 | 40205151 | 40205044 | ID=Msa1193730-mRNA-1:exon:13110;Parent=Msa1193730-mRNA-1 |
| chr8_1 | exon | 40206225 | 40206290 | 40206225 | ID=Msa1193730-mRNA-1:exon:13111;Parent=Msa1193730-mRNA-1 |
| chr8_1 | CDS | 40202645 | 40202669 | 40202645 | ID=Msa1193730-mRNA-1:cds;Parent=Msa1193730-mRNA-1 |
| chr8_1 | CDS | 40202781 | 40202918 | 40202781 | ID=Msa1193730-mRNA-1:cds;Parent=Msa1193730-mRNA-1 |
| chr8_1 | CDS | 40203045 | 40203190 | 40203045 | ID=Msa1193730-mRNA-1:cds;Parent=Msa1193730-mRNA-1 |
| chr8_1 | CDS | 40203734 | 40203818 | 40203734 | ID=Msa1193730-mRNA-1:cds;Parent=Msa1193730-mRNA-1 |
| chr8_1 | CDS | 40204620 | 40204969 | 40204620 | ID=Msa1193730-mRNA-1:cds;Parent=Msa1193730-mRNA-1 |
| chr8_1 | CDS | 40205044 | 40205151 | 40205044 | ID=Msa1193730-mRNA-1:cds;Parent=Msa1193730-mRNA-1 |
| chr8_1 | CDS | 40206225 | 40206290 | 40206225 | ID=Msa1193730-mRNA-1:cds;Parent=Msa1193730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
