Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015750 | Msa0304170 | 0.933853 | 9.941102e-96 | -8.615850e-47 |
| Msa0016570 | Msa0304170 | 0.884009 | 2.764178e-71 | -8.615850e-47 |
| Msa0016580 | Msa0304170 | 0.864635 | 1.055151e-64 | -8.615850e-47 |
| Msa0092630 | Msa0304170 | 0.803425 | 3.507786e-49 | -8.615850e-47 |
| Msa0102070 | Msa0304170 | 0.844079 | 9.437505e-59 | -8.615850e-47 |
| Msa0110270 | Msa0304170 | 0.852690 | 3.911583e-61 | -8.615850e-47 |
| Msa0111510 | Msa0304170 | 0.820826 | 5.586564e-53 | -8.615850e-47 |
| Msa0124100 | Msa0304170 | 0.802343 | 5.868072e-49 | -8.615850e-47 |
| Msa0142220 | Msa0304170 | 0.837685 | 4.492998e-57 | -8.615850e-47 |
| Msa0145750 | Msa0304170 | 0.818278 | 2.130670e-52 | -8.615850e-47 |
| Msa0153910 | Msa0304170 | 0.834544 | 2.818490e-56 | -8.615850e-47 |
| Msa0200000 | Msa0304170 | 0.829996 | 3.765848e-55 | -8.615850e-47 |
| Msa0227480 | Msa0304170 | 0.842665 | 2.250538e-58 | -8.615850e-47 |
| Msa0232850 | Msa0304170 | 0.830568 | 2.730061e-55 | -8.615850e-47 |
| Msa0267000 | Msa0304170 | 0.855650 | 5.471621e-62 | -8.615850e-47 |
| Msa0267010 | Msa0304170 | 0.868202 | 7.780109e-66 | -8.615850e-47 |
| Msa0270520 | Msa0304170 | 0.814759 | 1.308305e-51 | -8.615850e-47 |
| Msa0304170 | Msa0306460 | 0.936092 | 3.014923e-97 | -8.615850e-47 |
| Msa0304170 | Msa0342240 | 0.867433 | 1.373430e-65 | -8.615850e-47 |
| Msa0304170 | Msa0360510 | 0.838496 | 2.778445e-57 | -8.615850e-47 |
| Msa0304170 | Msa0365500 | 0.811220 | 7.805848e-51 | -8.615850e-47 |
| Msa0304170 | Msa0384800 | 0.840444 | 8.661796e-58 | -8.615850e-47 |
| Msa0304170 | Msa0414410 | 0.836782 | 7.646762e-57 | -8.615850e-47 |
| Msa0304170 | Msa0414420 | 0.867127 | 1.720521e-65 | -8.615850e-47 |
| Msa0304170 | Msa0436780 | 0.803325 | 3.678709e-49 | -8.615850e-47 |
| Msa0304170 | Msa0438620 | 0.828715 | 7.707941e-55 | -8.615850e-47 |
| Msa0304170 | Msa0444130 | 0.826063 | 3.332418e-54 | -8.615850e-47 |
| Msa0304170 | Msa0450000 | 0.807469 | 4.977450e-50 | -8.615850e-47 |
| Msa0304170 | Msa0451730 | 0.805095 | 1.575372e-49 | -8.615850e-47 |
| Msa0304170 | Msa0452900 | 0.882578 | 9.260090e-71 | -8.615850e-47 |
| Msa0304170 | Msa0453120 | 0.826162 | 3.156579e-54 | -8.615850e-47 |
| Msa0304170 | Msa0454910 | 0.809959 | 1.462405e-50 | -8.615850e-47 |
| Msa0304170 | Msa0485030 | 0.806565 | 7.732451e-50 | -8.615850e-47 |
| Msa0304170 | Msa0491590 | 0.834472 | 2.938173e-56 | -8.615850e-47 |
| Msa0304170 | Msa0502760 | 0.808834 | 2.549446e-50 | -8.615850e-47 |
| Msa0304170 | Msa0506270 | 0.814277 | 1.672500e-51 | -8.615850e-47 |
| Msa0304170 | Msa0564890 | 0.842617 | 2.317293e-58 | -8.615850e-47 |
| Msa0304170 | Msa0604350 | 0.805634 | 1.214061e-49 | -8.615850e-47 |
| Msa0304170 | Msa0636170 | 0.833045 | 6.682517e-56 | -8.615850e-47 |
| Msa0304170 | Msa0639610 | 0.803448 | 3.468734e-49 | -8.615850e-47 |
| Msa0304170 | Msa0678930 | 0.837085 | 6.399084e-57 | -8.615850e-47 |
| Msa0304170 | Msa0694370 | 0.805999 | 1.017898e-49 | -8.615850e-47 |
| Msa0304170 | Msa0725850 | 0.801693 | 7.983099e-49 | -8.615850e-47 |
| Msa0304170 | Msa0726140 | 0.848349 | 6.486900e-60 | -8.615850e-47 |
| Msa0304170 | Msa0729800 | 0.836897 | 7.146310e-57 | -8.615850e-47 |
| Msa0304170 | Msa0733290 | 0.823488 | 1.348242e-53 | -8.615850e-47 |
| Msa0304170 | Msa0741990 | 0.842021 | 3.333496e-58 | -8.615850e-47 |
| Msa0304170 | Msa0743810 | 0.874673 | 5.619244e-68 | -8.615850e-47 |
| Msa0304170 | Msa0745060 | 0.872539 | 2.943318e-67 | -8.615850e-47 |
| Msa0304170 | Msa0764960 | 0.816347 | 5.795757e-52 | -8.615850e-47 |
| Msa0304170 | Msa0767720 | 0.866109 | 3.624036e-65 | -8.615850e-47 |
| Msa0304170 | Msa0783160 | 0.874488 | 6.492976e-68 | -8.615850e-47 |
| Msa0304170 | Msa0787600 | 0.840222 | 9.903513e-58 | -8.615850e-47 |
| Msa0304170 | Msa0789250 | 0.825524 | 4.472635e-54 | -8.615850e-47 |
| Msa0304170 | Msa0808010 | 0.820936 | 5.270610e-53 | -8.615850e-47 |
| Msa0304170 | Msa0808020 | 0.817631 | 2.984069e-52 | -8.615850e-47 |
| Msa0304170 | Msa0811080 | 0.852434 | 4.627443e-61 | -8.615850e-47 |
| Msa0304170 | Msa0811270 | 0.808739 | 2.670964e-50 | -8.615850e-47 |
| Msa0304170 | Msa0825860 | 0.863441 | 2.483532e-64 | -8.615850e-47 |
| Msa0304170 | Msa0845930 | 0.805905 | 1.065272e-49 | -8.615850e-47 |
| Msa0304170 | Msa0846330 | 0.827858 | 1.240054e-54 | -8.615850e-47 |
| Msa0304170 | Msa0846350 | 0.841005 | 6.175896e-58 | -8.615850e-47 |
| Msa0304170 | Msa0858980 | 0.801925 | 7.152456e-49 | -8.615850e-47 |
| Msa0304170 | Msa0865320 | 0.854165 | 1.475796e-61 | -8.615850e-47 |
| Msa0304170 | Msa0872230 | 0.831692 | 1.445616e-55 | -8.615850e-47 |
| Msa0304170 | Msa0885290 | 0.808691 | 2.735502e-50 | -8.615850e-47 |
| Msa0304170 | Msa0888370 | 0.823042 | 1.713681e-53 | -8.615850e-47 |
| Msa0304170 | Msa0896080 | 0.816740 | 4.731179e-52 | -8.615850e-47 |
| Msa0304170 | Msa0957680 | 0.805692 | 1.180571e-49 | -8.615850e-47 |
| Msa0304170 | Msa0981270 | 0.808061 | 3.727237e-50 | -8.615850e-47 |
| Msa0304170 | Msa0981370 | 0.813549 | 2.419926e-51 | -8.615850e-47 |
| Msa0304170 | Msa0989060 | 0.827852 | 1.244052e-54 | -8.615850e-47 |
| Msa0304170 | Msa1016280 | 0.864682 | 1.019830e-64 | -8.615850e-47 |
| Msa0304170 | Msa1024240 | 0.840053 | 1.096237e-57 | -8.615850e-47 |
| Msa0304170 | Msa1024370 | 0.825767 | 3.916193e-54 | -8.615850e-47 |
| Msa0304170 | Msa1025360 | 0.872142 | 3.990311e-67 | -8.615850e-47 |
| Msa0304170 | Msa1025370 | 0.855285 | 6.989592e-62 | -8.615850e-47 |
| Msa0304170 | Msa1030060 | 0.833776 | 4.391441e-56 | -8.615850e-47 |
| Msa0304170 | Msa1044830 | 0.862208 | 5.964507e-64 | -8.615850e-47 |
| Msa0304170 | Msa1044840 | 0.873262 | 1.684739e-67 | -8.615850e-47 |
| Msa0304170 | Msa1060840 | 0.806152 | 9.450632e-50 | -8.615850e-47 |
| Msa0304170 | Msa1071100 | 0.806378 | 8.466959e-50 | -8.615850e-47 |
| Msa0304170 | Msa1077460 | 0.800452 | 1.432015e-48 | -8.615850e-47 |
| Msa0304170 | Msa1092990 | 0.877381 | 6.580140e-69 | -8.615850e-47 |
| Msa0304170 | Msa1100980 | 0.853246 | 2.712969e-61 | -8.615850e-47 |
| Msa0304170 | Msa1109440 | 0.839072 | 1.971144e-57 | -8.615850e-47 |
| Msa0304170 | Msa1121200 | 0.819949 | 8.877228e-53 | -8.615850e-47 |
| Msa0304170 | Msa1135740 | 0.832092 | 1.151285e-55 | -8.615850e-47 |
| Msa0304170 | Msa1146110 | 0.896939 | 2.277279e-76 | -8.615850e-47 |
| Msa0304170 | Msa1148020 | 0.836370 | 9.738056e-57 | -8.615850e-47 |
| Msa0304170 | Msa1150370 | 0.835644 | 1.488206e-56 | -8.615850e-47 |
| Msa0304170 | Msa1173920 | 0.813758 | 2.176002e-51 | -8.615850e-47 |
| Msa0304170 | Msa1187940 | 0.871134 | 8.613637e-67 | -8.615850e-47 |
| Msa0304170 | Msa1187950 | 0.847945 | 8.388885e-60 | -8.615850e-47 |
| Msa0304170 | Msa1192640 | 0.858749 | 6.651175e-63 | -8.615850e-47 |
| Msa0304170 | Msa1193730 | 0.810425 | 1.159882e-50 | -8.615850e-47 |
| Msa0304170 | Msa1269670 | 0.868878 | 4.704850e-66 | -8.615850e-47 |
| Msa0304170 | Msa1270230 | 0.891323 | 4.413209e-74 | -8.615850e-47 |
| Msa0304170 | Msa1270240 | 0.840972 | 6.302224e-58 | -8.615850e-47 |
| Msa0304170 | Msa1270270 | 0.862283 | 5.657126e-64 | -8.615850e-47 |
| Msa0304170 | Msa1273230 | 0.803373 | 3.596509e-49 | -8.615850e-47 |
| Msa0304170 | Msa1283330 | 0.863415 | 2.529985e-64 | -8.615850e-47 |
| Msa0304170 | Msa1285930 | 0.878799 | 2.096797e-69 | -8.615850e-47 |
| Msa0304170 | Msa1287800 | 0.869986 | 2.051894e-66 | -8.615850e-47 |
| Msa0304170 | Msa1287810 | 0.880236 | 6.479579e-70 | -8.615850e-47 |
| Msa0304170 | Msa1289430 | 0.838995 | 2.064189e-57 | -8.615850e-47 |
| Msa0304170 | Msa1305480 | 0.809315 | 2.011027e-50 | -8.615850e-47 |
| Msa0304170 | Msa1307890 | 0.813970 | 1.954467e-51 | -8.615850e-47 |
| Msa0304170 | Msa1310120 | 0.806362 | 8.536662e-50 | -8.615850e-47 |
| Msa0304170 | Msa1320300 | 0.808196 | 3.487418e-50 | -8.615850e-47 |
| Msa0304170 | Msa1340590 | 0.832837 | 7.526126e-56 | -8.615850e-47 |
| Msa0304170 | Msa1382690 | 0.818759 | 1.657558e-52 | -8.615850e-47 |
| Msa0304170 | Msa1397150 | 0.803485 | 3.409138e-49 | -8.615850e-47 |
| Msa0304170 | Msa1397580 | 0.830566 | 2.731696e-55 | -8.615850e-47 |
| Msa0304170 | Msa1404000 | 0.846300 | 2.369075e-59 | -8.615850e-47 |
| Msa0304170 | Msa1408780 | 0.820844 | 5.533383e-53 | -8.615850e-47 |
| Msa0304170 | Msa1415310 | 0.842987 | 1.848319e-58 | -8.615850e-47 |
| Msa0304170 | Msa1422180 | 0.835247 | 1.875347e-56 | -8.615850e-47 |
| Msa0304170 | Msa1433120 | 0.840427 | 8.751492e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 26 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAGTATCAATCTTATAT+AGG | 0.366162 | 2_3:-61466933 | Msa0304170:five_prime_UTR |
| CCACTTGATTCCCTTGCGTT+GGG | 0.409880 | 2_3:+61466422 | None:intergenic |
| CCCACTTGATTCCCTTGCGT+TGG | 0.431316 | 2_3:+61466421 | None:intergenic |
| GAGATCAGAAAGTTCTTCTC+AGG | 0.481007 | 2_3:-61466474 | Msa0304170:CDS |
| AGGAAGCAATAAATTTAAGC+TGG | 0.504728 | 2_3:-61466961 | Msa0304170:five_prime_UTR |
| CGAGATACAACAATCTCATC+GGG | 0.510114 | 2_3:-61466324 | Msa0304170:CDS |
| GTTCCTTTGTTCCCAACGCA+AGG | 0.519018 | 2_3:-61466433 | Msa0304170:CDS |
| TCAGTCTCAGTTTACACGGC+TGG | 0.533581 | 2_3:-61466897 | Msa0304170:five_prime_UTR |
| CAGGAAAGTAAAACACAAGA+TGG | 0.533616 | 2_3:-61466455 | Msa0304170:CDS |
| AGCAGCAACAAAAGTAGTGA+AGG | 0.542395 | 2_3:-61466987 | Msa0304170:five_prime_UTR |
| TTCCCTTGCGTTGGGAACAA+AGG | 0.550204 | 2_3:+61466430 | None:intergenic |
| AAGAGAGATATCTACGGCTA+AGG | 0.558282 | 2_3:-61468046 | Msa0304170:intron |
| TCGAGATACAACAATCTCAT+CGG | 0.561426 | 2_3:-61466325 | Msa0304170:CDS |
| AACAAAAGTAGTGAAGGAAG+AGG | 0.570751 | 2_3:-61466981 | Msa0304170:five_prime_UTR |
| TTCCTTTGTTCCCAACGCAA+GGG | 0.577355 | 2_3:-61466432 | Msa0304170:CDS |
| CAGCCGCGAGTGTTAAAAGT+GGG | 0.578565 | 2_3:-61466394 | Msa0304170:CDS |
| TTGTGCTGTGGAAATGTAGG+TGG | 0.582624 | 2_3:-61468094 | None:intergenic |
| CCCAACGCAAGGGAATCAAG+TGG | 0.588631 | 2_3:-61466422 | Msa0304170:CDS |
| CCAACGCAAGGGAATCAAGT+GGG | 0.597329 | 2_3:-61466421 | Msa0304170:CDS |
| CAACGCAAGGGAATCAAGTG+GGG | 0.622276 | 2_3:-61466420 | Msa0304170:CDS |
| TCTAAGAAGAGAGATATCTA+CGG | 0.629357 | 2_3:-61468052 | Msa0304170:five_prime_UTR |
| GCCGCGAGTGTTAAAAGTGG+GGG | 0.633082 | 2_3:-61466392 | Msa0304170:CDS |
| TCAGCCGCGAGTGTTAAAAG+TGG | 0.638737 | 2_3:-61466395 | Msa0304170:CDS |
| GCAGTCAGTCTCAGTTTACA+CGG | 0.654322 | 2_3:-61466901 | Msa0304170:five_prime_UTR |
| AGCCGCGAGTGTTAAAAGTG+GGG | 0.663832 | 2_3:-61466393 | Msa0304170:CDS |
| AACGCAAGGGAATCAAGTGG+GGG | 0.669401 | 2_3:-61466419 | Msa0304170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTCATTTGCTATTT+TGG | + | chr2_3:61466654-61466673 | None:intergenic | 15.0% |
| !!! | ATATATTTTTCTAGTCAATT+TGG | - | chr2_3:61466756-61466775 | Msa0304170:intron | 15.0% |
| !! | ATTAATTAAATGAATGAGTA+TGG | - | chr2_3:61467308-61467327 | Msa0304170:intron | 15.0% |
| !!! | GATATCAGTTATTTTTTATA+AGG | + | chr2_3:61467375-61467394 | None:intergenic | 15.0% |
| !!! | TTATTTTTCATTTGCTATTT+TGG | + | chr2_3:61466654-61466673 | None:intergenic | 15.0% |
| !!! | ATATATTTTTCTAGTCAATT+TGG | - | chr2_3:61466756-61466775 | Msa0304170:intron | 15.0% |
| !! | ATTAATTAAATGAATGAGTA+TGG | - | chr2_3:61467308-61467327 | Msa0304170:intron | 15.0% |
| !!! | GATATCAGTTATTTTTTATA+AGG | + | chr2_3:61467375-61467394 | None:intergenic | 15.0% |
| !! | ATTAACAAATACCTCTTAAA+AGG | + | chr2_3:61466877-61466896 | None:intergenic | 20.0% |
| !! | TCATATTTAGTGAATAAAGT+TGG | - | chr2_3:61466942-61466961 | Msa0304170:five_prime_UTR | 20.0% |
| !! | AAAAAGCAAACGAAAAATAA+AGG | + | chr2_3:61467207-61467226 | None:intergenic | 20.0% |
| !! | TTTAATTAATGCTCTACATA+GGG | + | chr2_3:61467298-61467317 | None:intergenic | 20.0% |
| !! | ATTTAATTAATGCTCTACAT+AGG | + | chr2_3:61467299-61467318 | None:intergenic | 20.0% |
| !! | TGATAGTATCAATCTTATAT+AGG | - | chr2_3:61467476-61467495 | Msa0304170:intron | 20.0% |
| !! | TATACAATAGAATACTTAAG+TGG | + | chr2_3:61467760-61467779 | None:intergenic | 20.0% |
| !! | ATTAACAAATACCTCTTAAA+AGG | + | chr2_3:61466877-61466896 | None:intergenic | 20.0% |
| !! | TCATATTTAGTGAATAAAGT+TGG | - | chr2_3:61466942-61466961 | Msa0304170:five_prime_UTR | 20.0% |
| !! | AAAAAGCAAACGAAAAATAA+AGG | + | chr2_3:61467207-61467226 | None:intergenic | 20.0% |
| !! | TTTAATTAATGCTCTACATA+GGG | + | chr2_3:61467298-61467317 | None:intergenic | 20.0% |
| !! | ATTTAATTAATGCTCTACAT+AGG | + | chr2_3:61467299-61467318 | None:intergenic | 20.0% |
| !! | TGATAGTATCAATCTTATAT+AGG | - | chr2_3:61467476-61467495 | Msa0304170:intron | 20.0% |
| !! | TATACAATAGAATACTTAAG+TGG | + | chr2_3:61467760-61467779 | None:intergenic | 20.0% |
| !!! | TTGGTTTTGATTTTATGTTG+TGG | - | chr2_3:61466398-61466417 | Msa0304170:CDS | 25.0% |
| !! | ATTTTATGTTGTGGAAATGA+AGG | - | chr2_3:61466407-61466426 | Msa0304170:CDS | 25.0% |
| !! | TTTTATGTTGTGGAAATGAA+GGG | - | chr2_3:61466408-61466427 | Msa0304170:CDS | 25.0% |
| !!! | TAAGTAGATTGGTGTTATAT+CGG | - | chr2_3:61466448-61466467 | Msa0304170:CDS | 25.0% |
| !!! | GTATGCATTTTTATTTTGTC+TGG | - | chr2_3:61466898-61466917 | Msa0304170:five_prime_UTR | 25.0% |
| ! | AAACGAAAAATAAAGGAACA+AGG | + | chr2_3:61467200-61467219 | None:intergenic | 25.0% |
| ! | TATTACATCTGTATAGTTAC+TGG | - | chr2_3:61467593-61467612 | Msa0304170:intron | 25.0% |
| ! | GAAACATGTATAGGTATAAT+TGG | + | chr2_3:61467848-61467867 | None:intergenic | 25.0% |
| !!! | TTGGTTTTGATTTTATGTTG+TGG | - | chr2_3:61466398-61466417 | Msa0304170:CDS | 25.0% |
| !! | ATTTTATGTTGTGGAAATGA+AGG | - | chr2_3:61466407-61466426 | Msa0304170:CDS | 25.0% |
| !! | TTTTATGTTGTGGAAATGAA+GGG | - | chr2_3:61466408-61466427 | Msa0304170:CDS | 25.0% |
| !!! | TAAGTAGATTGGTGTTATAT+CGG | - | chr2_3:61466448-61466467 | Msa0304170:CDS | 25.0% |
| !!! | GTATGCATTTTTATTTTGTC+TGG | - | chr2_3:61466898-61466917 | Msa0304170:five_prime_UTR | 25.0% |
| ! | AAACGAAAAATAAAGGAACA+AGG | + | chr2_3:61467200-61467219 | None:intergenic | 25.0% |
| ! | TATTACATCTGTATAGTTAC+TGG | - | chr2_3:61467593-61467612 | Msa0304170:intron | 25.0% |
| ! | GAAACATGTATAGGTATAAT+TGG | + | chr2_3:61467848-61467867 | None:intergenic | 25.0% |
| TCTAAGAAGAGAGATATCTA+CGG | - | chr2_3:61466357-61466376 | Msa0304170:CDS | 30.0% | |
| !! | GCTAAGGTATCTTTCATTTT+TGG | - | chr2_3:61466379-61466398 | Msa0304170:CDS | 30.0% |
| TGAATACTATGAGACATGTT+TGG | - | chr2_3:61466519-61466538 | Msa0304170:intron | 30.0% | |
| TAAGCACTTGGAATATTGTT+TGG | - | chr2_3:61466571-61466590 | Msa0304170:intron | 30.0% | |
| !!! | TGGTTCTCTATTTTTTCAAG+AGG | - | chr2_3:61466776-61466795 | Msa0304170:intron | 30.0% |
| CAATGTGTATCCAACTAAAA+AGG | + | chr2_3:61466835-61466854 | None:intergenic | 30.0% | |
| GATCAGTCTTAAGAACTAAA+TGG | - | chr2_3:61467038-61467057 | Msa0304170:intron | 30.0% | |
| TTCAACAAATAAAGTAACGC+AGG | + | chr2_3:61467100-61467119 | None:intergenic | 30.0% | |
| AGGAAGCAATAAATTTAAGC+TGG | - | chr2_3:61467448-61467467 | Msa0304170:intron | 30.0% | |
| ! | TCAATCGTGTCAAATTTTCT+TGG | - | chr2_3:61467798-61467817 | Msa0304170:intron | 30.0% |
| ! | CAATCGTGTCAAATTTTCTT+GGG | - | chr2_3:61467799-61467818 | Msa0304170:intron | 30.0% |
| GCATAGTATGAAACATGTAT+AGG | + | chr2_3:61467857-61467876 | None:intergenic | 30.0% | |
| !! | CGCATGATTTTAACATTTAC+TGG | + | chr2_3:61467895-61467914 | None:intergenic | 30.0% |
| ! | AAGAACTTGTGTTTTACTTG+CGG | + | chr2_3:61468048-61468067 | None:intergenic | 30.0% |
| TCTAAGAAGAGAGATATCTA+CGG | - | chr2_3:61466357-61466376 | Msa0304170:CDS | 30.0% | |
| !! | GCTAAGGTATCTTTCATTTT+TGG | - | chr2_3:61466379-61466398 | Msa0304170:CDS | 30.0% |
| TGAATACTATGAGACATGTT+TGG | - | chr2_3:61466519-61466538 | Msa0304170:intron | 30.0% | |
| TAAGCACTTGGAATATTGTT+TGG | - | chr2_3:61466571-61466590 | Msa0304170:intron | 30.0% | |
| !!! | TGGTTCTCTATTTTTTCAAG+AGG | - | chr2_3:61466776-61466795 | Msa0304170:intron | 30.0% |
| CAATGTGTATCCAACTAAAA+AGG | + | chr2_3:61466835-61466854 | None:intergenic | 30.0% | |
| GATCAGTCTTAAGAACTAAA+TGG | - | chr2_3:61467038-61467057 | Msa0304170:intron | 30.0% | |
| TTCAACAAATAAAGTAACGC+AGG | + | chr2_3:61467100-61467119 | None:intergenic | 30.0% | |
| AGGAAGCAATAAATTTAAGC+TGG | - | chr2_3:61467448-61467467 | Msa0304170:intron | 30.0% | |
| ! | TCAATCGTGTCAAATTTTCT+TGG | - | chr2_3:61467798-61467817 | Msa0304170:intron | 30.0% |
| ! | CAATCGTGTCAAATTTTCTT+GGG | - | chr2_3:61467799-61467818 | Msa0304170:intron | 30.0% |
| GCATAGTATGAAACATGTAT+AGG | + | chr2_3:61467857-61467876 | None:intergenic | 30.0% | |
| !! | CGCATGATTTTAACATTTAC+TGG | + | chr2_3:61467895-61467914 | None:intergenic | 30.0% |
| ! | AAGAACTTGTGTTTTACTTG+CGG | + | chr2_3:61468048-61468067 | None:intergenic | 30.0% |
| !! | AAATGAAGGGTGTTATTGGT+TGG | - | chr2_3:61466421-61466440 | Msa0304170:CDS | 35.0% |
| !! | AATGAAGGGTGTTATTGGTT+GGG | - | chr2_3:61466422-61466441 | Msa0304170:CDS | 35.0% |
| !! | TAGATTGGTGTTATATCGGT+TGG | - | chr2_3:61466452-61466471 | Msa0304170:CDS | 35.0% |
| !! | AGATTGGTGTTATATCGGTT+GGG | - | chr2_3:61466453-61466472 | Msa0304170:CDS | 35.0% |
| !! | ATGATGCATGCCTTTTTAGT+TGG | - | chr2_3:61466822-61466841 | Msa0304170:intron | 35.0% |
| ! | TATGATGCATGCCTTTTAAG+AGG | - | chr2_3:61466863-61466882 | Msa0304170:intron | 35.0% |
| CAGTCTTAAGAACTAAATGG+AGG | - | chr2_3:61467041-61467060 | Msa0304170:intron | 35.0% | |
| AAATAAAGTAACGCAGGAAG+GGG | + | chr2_3:61467094-61467113 | None:intergenic | 35.0% | |
| CAAATAAAGTAACGCAGGAA+GGG | + | chr2_3:61467095-61467114 | None:intergenic | 35.0% | |
| ACAAATAAAGTAACGCAGGA+AGG | + | chr2_3:61467096-61467115 | None:intergenic | 35.0% | |
| GTAATGTGTTCCCATTAAGA+AGG | - | chr2_3:61467230-61467249 | Msa0304170:intron | 35.0% | |
| ATCTTGAATGTTTGTGCTTC+AGG | - | chr2_3:61467392-61467411 | Msa0304170:intron | 35.0% | |
| AACAAAAGTAGTGAAGGAAG+AGG | - | chr2_3:61467428-61467447 | Msa0304170:intron | 35.0% | |
| TACATCTGTATAGTTACTGG+TGG | - | chr2_3:61467596-61467615 | Msa0304170:intron | 35.0% | |
| CTACCTAAGCTTCATCTATA+AGG | - | chr2_3:61467708-61467727 | Msa0304170:intron | 35.0% | |
| ATATCATCAGTTTCCTAGCT+GGG | + | chr2_3:61467736-61467755 | None:intergenic | 35.0% | |
| AATATCATCAGTTTCCTAGC+TGG | + | chr2_3:61467737-61467756 | None:intergenic | 35.0% | |
| CAGGAAAGTAAAACACAAGA+TGG | - | chr2_3:61467954-61467973 | Msa0304170:intron | 35.0% | |
| TCGAGATACAACAATCTCAT+CGG | - | chr2_3:61468084-61468103 | Msa0304170:five_prime_UTR | 35.0% | |
| !! | AAATGAAGGGTGTTATTGGT+TGG | - | chr2_3:61466421-61466440 | Msa0304170:CDS | 35.0% |
| !! | AATGAAGGGTGTTATTGGTT+GGG | - | chr2_3:61466422-61466441 | Msa0304170:CDS | 35.0% |
| !! | TAGATTGGTGTTATATCGGT+TGG | - | chr2_3:61466452-61466471 | Msa0304170:CDS | 35.0% |
| !! | AGATTGGTGTTATATCGGTT+GGG | - | chr2_3:61466453-61466472 | Msa0304170:CDS | 35.0% |
| !! | ATGATGCATGCCTTTTTAGT+TGG | - | chr2_3:61466822-61466841 | Msa0304170:intron | 35.0% |
| ! | TATGATGCATGCCTTTTAAG+AGG | - | chr2_3:61466863-61466882 | Msa0304170:intron | 35.0% |
| CAGTCTTAAGAACTAAATGG+AGG | - | chr2_3:61467041-61467060 | Msa0304170:intron | 35.0% | |
| AAATAAAGTAACGCAGGAAG+GGG | + | chr2_3:61467094-61467113 | None:intergenic | 35.0% | |
| CAAATAAAGTAACGCAGGAA+GGG | + | chr2_3:61467095-61467114 | None:intergenic | 35.0% | |
| ACAAATAAAGTAACGCAGGA+AGG | + | chr2_3:61467096-61467115 | None:intergenic | 35.0% | |
| GTAATGTGTTCCCATTAAGA+AGG | - | chr2_3:61467230-61467249 | Msa0304170:intron | 35.0% | |
| ATCTTGAATGTTTGTGCTTC+AGG | - | chr2_3:61467392-61467411 | Msa0304170:intron | 35.0% | |
| AACAAAAGTAGTGAAGGAAG+AGG | - | chr2_3:61467428-61467447 | Msa0304170:intron | 35.0% | |
| TACATCTGTATAGTTACTGG+TGG | - | chr2_3:61467596-61467615 | Msa0304170:intron | 35.0% | |
| CTACCTAAGCTTCATCTATA+AGG | - | chr2_3:61467708-61467727 | Msa0304170:intron | 35.0% | |
| ATATCATCAGTTTCCTAGCT+GGG | + | chr2_3:61467736-61467755 | None:intergenic | 35.0% | |
| AATATCATCAGTTTCCTAGC+TGG | + | chr2_3:61467737-61467756 | None:intergenic | 35.0% | |
| CAGGAAAGTAAAACACAAGA+TGG | - | chr2_3:61467954-61467973 | Msa0304170:intron | 35.0% | |
| TCGAGATACAACAATCTCAT+CGG | - | chr2_3:61468084-61468103 | Msa0304170:five_prime_UTR | 35.0% | |
| AAGAGAGATATCTACGGCTA+AGG | - | chr2_3:61466363-61466382 | Msa0304170:CDS | 40.0% | |
| !! | GTGGAAATGAAGGGTGTTAT+TGG | - | chr2_3:61466417-61466436 | Msa0304170:CDS | 40.0% |
| !! | ATGAAGGGTGTTATTGGTTG+GGG | - | chr2_3:61466423-61466442 | Msa0304170:CDS | 40.0% |
| TGGTTGGGGATTAAGTAGAT+TGG | - | chr2_3:61466437-61466456 | Msa0304170:CDS | 40.0% | |
| !! | GATTGGTGTTATATCGGTTG+GGG | - | chr2_3:61466454-61466473 | Msa0304170:CDS | 40.0% |
| !! | ATTGGTGTTATATCGGTTGG+GGG | - | chr2_3:61466455-61466474 | Msa0304170:CDS | 40.0% |
| !! | TGTTGACTTGCATAAGCACT+TGG | - | chr2_3:61466559-61466578 | Msa0304170:intron | 40.0% |
| ACTGTGCTCACCTTCTTAAT+GGG | + | chr2_3:61467243-61467262 | None:intergenic | 40.0% | |
| TACTGTGCTCACCTTCTTAA+TGG | + | chr2_3:61467244-61467263 | None:intergenic | 40.0% | |
| TTGGTTATACTGCATCCACA+TGG | + | chr2_3:61467270-61467289 | None:intergenic | 40.0% | |
| !! | TGCTCTACATAGGGAGTATT+TGG | + | chr2_3:61467289-61467308 | None:intergenic | 40.0% |
| AATGTTTGTGCTTCAGGTGT+GGG | - | chr2_3:61467398-61467417 | Msa0304170:intron | 40.0% | |
| AGCAGCAACAAAAGTAGTGA+AGG | - | chr2_3:61467422-61467441 | Msa0304170:intron | 40.0% | |
| ! | TCTAAGATGCGCACCTAATT+TGG | - | chr2_3:61467621-61467640 | Msa0304170:intron | 40.0% |
| CTAAGATGCGCACCTAATTT+GGG | - | chr2_3:61467622-61467641 | Msa0304170:intron | 40.0% | |
| TAAGATGCGCACCTAATTTG+GGG | - | chr2_3:61467623-61467642 | Msa0304170:intron | 40.0% | |
| AAGTTTCCAGTGGCCAATAA+GGG | + | chr2_3:61467662-61467681 | None:intergenic | 40.0% | |
| GTGCCTTATAGATGAAGCTT+AGG | + | chr2_3:61467714-61467733 | None:intergenic | 40.0% | |
| TCATGCGCTTGAATTGTGTT+AGG | - | chr2_3:61467908-61467927 | Msa0304170:intron | 40.0% | |
| CGCTTGAATTGTGTTAGGAT+GGG | - | chr2_3:61467913-61467932 | Msa0304170:intron | 40.0% | |
| GAGATCAGAAAGTTCTTCTC+AGG | - | chr2_3:61467935-61467954 | Msa0304170:intron | 40.0% | |
| CGAGATACAACAATCTCATC+GGG | - | chr2_3:61468085-61468104 | Msa0304170:five_prime_UTR | 40.0% | |
| AAGAGAGATATCTACGGCTA+AGG | - | chr2_3:61466363-61466382 | Msa0304170:CDS | 40.0% | |
| !! | GTGGAAATGAAGGGTGTTAT+TGG | - | chr2_3:61466417-61466436 | Msa0304170:CDS | 40.0% |
| !! | ATGAAGGGTGTTATTGGTTG+GGG | - | chr2_3:61466423-61466442 | Msa0304170:CDS | 40.0% |
| TGGTTGGGGATTAAGTAGAT+TGG | - | chr2_3:61466437-61466456 | Msa0304170:CDS | 40.0% | |
| !! | GATTGGTGTTATATCGGTTG+GGG | - | chr2_3:61466454-61466473 | Msa0304170:CDS | 40.0% |
| !! | ATTGGTGTTATATCGGTTGG+GGG | - | chr2_3:61466455-61466474 | Msa0304170:CDS | 40.0% |
| !! | TGTTGACTTGCATAAGCACT+TGG | - | chr2_3:61466559-61466578 | Msa0304170:intron | 40.0% |
| ACTGTGCTCACCTTCTTAAT+GGG | + | chr2_3:61467243-61467262 | None:intergenic | 40.0% | |
| TACTGTGCTCACCTTCTTAA+TGG | + | chr2_3:61467244-61467263 | None:intergenic | 40.0% | |
| TTGGTTATACTGCATCCACA+TGG | + | chr2_3:61467270-61467289 | None:intergenic | 40.0% | |
| !! | TGCTCTACATAGGGAGTATT+TGG | + | chr2_3:61467289-61467308 | None:intergenic | 40.0% |
| AATGTTTGTGCTTCAGGTGT+GGG | - | chr2_3:61467398-61467417 | Msa0304170:intron | 40.0% | |
| AGCAGCAACAAAAGTAGTGA+AGG | - | chr2_3:61467422-61467441 | Msa0304170:intron | 40.0% | |
| ! | TCTAAGATGCGCACCTAATT+TGG | - | chr2_3:61467621-61467640 | Msa0304170:intron | 40.0% |
| CTAAGATGCGCACCTAATTT+GGG | - | chr2_3:61467622-61467641 | Msa0304170:intron | 40.0% | |
| TAAGATGCGCACCTAATTTG+GGG | - | chr2_3:61467623-61467642 | Msa0304170:intron | 40.0% | |
| AAGTTTCCAGTGGCCAATAA+GGG | + | chr2_3:61467662-61467681 | None:intergenic | 40.0% | |
| GTGCCTTATAGATGAAGCTT+AGG | + | chr2_3:61467714-61467733 | None:intergenic | 40.0% | |
| TCATGCGCTTGAATTGTGTT+AGG | - | chr2_3:61467908-61467927 | Msa0304170:intron | 40.0% | |
| CGCTTGAATTGTGTTAGGAT+GGG | - | chr2_3:61467913-61467932 | Msa0304170:intron | 40.0% | |
| GAGATCAGAAAGTTCTTCTC+AGG | - | chr2_3:61467935-61467954 | Msa0304170:intron | 40.0% | |
| CGAGATACAACAATCTCATC+GGG | - | chr2_3:61468085-61468104 | Msa0304170:five_prime_UTR | 40.0% | |
| GTGAGCACAGTATATCCATG+TGG | - | chr2_3:61467252-61467271 | Msa0304170:intron | 45.0% | |
| GAATGTTTGTGCTTCAGGTG+TGG | - | chr2_3:61467397-61467416 | Msa0304170:intron | 45.0% | |
| GCAGTCAGTCTCAGTTTACA+CGG | - | chr2_3:61467508-61467527 | Msa0304170:intron | 45.0% | |
| ! | TGTACGCTTGCTACCCTTAT+TGG | - | chr2_3:61467646-61467665 | Msa0304170:intron | 45.0% |
| CAAGTTTCCAGTGGCCAATA+AGG | + | chr2_3:61467663-61467682 | None:intergenic | 45.0% | |
| TTCCTCTGACAAGTTTCCAG+TGG | + | chr2_3:61467672-61467691 | None:intergenic | 45.0% | |
| GCGCTTGAATTGTGTTAGGA+TGG | - | chr2_3:61467912-61467931 | Msa0304170:intron | 45.0% | |
| TTCCTTTGTTCCCAACGCAA+GGG | - | chr2_3:61467977-61467996 | Msa0304170:intron | 45.0% | |
| GTGAGCACAGTATATCCATG+TGG | - | chr2_3:61467252-61467271 | Msa0304170:intron | 45.0% | |
| GAATGTTTGTGCTTCAGGTG+TGG | - | chr2_3:61467397-61467416 | Msa0304170:intron | 45.0% | |
| GCAGTCAGTCTCAGTTTACA+CGG | - | chr2_3:61467508-61467527 | Msa0304170:intron | 45.0% | |
| ! | TGTACGCTTGCTACCCTTAT+TGG | - | chr2_3:61467646-61467665 | Msa0304170:intron | 45.0% |
| CAAGTTTCCAGTGGCCAATA+AGG | + | chr2_3:61467663-61467682 | None:intergenic | 45.0% | |
| TTCCTCTGACAAGTTTCCAG+TGG | + | chr2_3:61467672-61467691 | None:intergenic | 45.0% | |
| GCGCTTGAATTGTGTTAGGA+TGG | - | chr2_3:61467912-61467931 | Msa0304170:intron | 45.0% | |
| TTCCTTTGTTCCCAACGCAA+GGG | - | chr2_3:61467977-61467996 | Msa0304170:intron | 45.0% | |
| ! | TATATCGGTTGGGGGATCAC+AGG | - | chr2_3:61466463-61466482 | Msa0304170:CDS | 50.0% |
| TCAGTCTCAGTTTACACGGC+TGG | - | chr2_3:61467512-61467531 | Msa0304170:intron | 50.0% | |
| GCAAGCGTACACCCCAAATT+AGG | + | chr2_3:61467637-61467656 | None:intergenic | 50.0% | |
| TTGCTACCCTTATTGGCCAC+TGG | - | chr2_3:61467653-61467672 | Msa0304170:intron | 50.0% | |
| ! | CATCTATAAGGCACCCAGCT+AGG | - | chr2_3:61467720-61467739 | Msa0304170:intron | 50.0% |
| GTTCCTTTGTTCCCAACGCA+AGG | - | chr2_3:61467976-61467995 | Msa0304170:intron | 50.0% | |
| TTCCCTTGCGTTGGGAACAA+AGG | + | chr2_3:61467982-61468001 | None:intergenic | 50.0% | |
| CCACTTGATTCCCTTGCGTT+GGG | + | chr2_3:61467990-61468009 | None:intergenic | 50.0% | |
| CCAACGCAAGGGAATCAAGT+GGG | - | chr2_3:61467988-61468007 | Msa0304170:intron | 50.0% | |
| CAACGCAAGGGAATCAAGTG+GGG | - | chr2_3:61467989-61468008 | Msa0304170:intron | 50.0% | |
| AACGCAAGGGAATCAAGTGG+GGG | - | chr2_3:61467990-61468009 | Msa0304170:intron | 50.0% | |
| TCAGCCGCGAGTGTTAAAAG+TGG | - | chr2_3:61468014-61468033 | Msa0304170:intron | 50.0% | |
| CAGCCGCGAGTGTTAAAAGT+GGG | - | chr2_3:61468015-61468034 | Msa0304170:intron | 50.0% | |
| AGCCGCGAGTGTTAAAAGTG+GGG | - | chr2_3:61468016-61468035 | Msa0304170:intron | 50.0% | |
| !! | TCCCCCACTTTTAACACTCG+CGG | + | chr2_3:61468021-61468040 | None:intergenic | 50.0% |
| ! | TATATCGGTTGGGGGATCAC+AGG | - | chr2_3:61466463-61466482 | Msa0304170:CDS | 50.0% |
| TCAGTCTCAGTTTACACGGC+TGG | - | chr2_3:61467512-61467531 | Msa0304170:intron | 50.0% | |
| GCAAGCGTACACCCCAAATT+AGG | + | chr2_3:61467637-61467656 | None:intergenic | 50.0% | |
| TTGCTACCCTTATTGGCCAC+TGG | - | chr2_3:61467653-61467672 | Msa0304170:intron | 50.0% | |
| ! | CATCTATAAGGCACCCAGCT+AGG | - | chr2_3:61467720-61467739 | Msa0304170:intron | 50.0% |
| GTTCCTTTGTTCCCAACGCA+AGG | - | chr2_3:61467976-61467995 | Msa0304170:intron | 50.0% | |
| TTCCCTTGCGTTGGGAACAA+AGG | + | chr2_3:61467982-61468001 | None:intergenic | 50.0% | |
| CCACTTGATTCCCTTGCGTT+GGG | + | chr2_3:61467990-61468009 | None:intergenic | 50.0% | |
| CCAACGCAAGGGAATCAAGT+GGG | - | chr2_3:61467988-61468007 | Msa0304170:intron | 50.0% | |
| CAACGCAAGGGAATCAAGTG+GGG | - | chr2_3:61467989-61468008 | Msa0304170:intron | 50.0% | |
| AACGCAAGGGAATCAAGTGG+GGG | - | chr2_3:61467990-61468009 | Msa0304170:intron | 50.0% | |
| TCAGCCGCGAGTGTTAAAAG+TGG | - | chr2_3:61468014-61468033 | Msa0304170:intron | 50.0% | |
| CAGCCGCGAGTGTTAAAAGT+GGG | - | chr2_3:61468015-61468034 | Msa0304170:intron | 50.0% | |
| AGCCGCGAGTGTTAAAAGTG+GGG | - | chr2_3:61468016-61468035 | Msa0304170:intron | 50.0% | |
| !! | TCCCCCACTTTTAACACTCG+CGG | + | chr2_3:61468021-61468040 | None:intergenic | 50.0% |
| GGCCACTGGAAACTTGTCAG+AGG | - | chr2_3:61467667-61467686 | Msa0304170:intron | 55.0% | |
| CCCAACGCAAGGGAATCAAG+TGG | - | chr2_3:61467987-61468006 | Msa0304170:intron | 55.0% | |
| CCCACTTGATTCCCTTGCGT+TGG | + | chr2_3:61467991-61468010 | None:intergenic | 55.0% | |
| GCCGCGAGTGTTAAAAGTGG+GGG | - | chr2_3:61468017-61468036 | Msa0304170:intron | 55.0% | |
| GGCCACTGGAAACTTGTCAG+AGG | - | chr2_3:61467667-61467686 | Msa0304170:intron | 55.0% | |
| CCCAACGCAAGGGAATCAAG+TGG | - | chr2_3:61467987-61468006 | Msa0304170:intron | 55.0% | |
| CCCACTTGATTCCCTTGCGT+TGG | + | chr2_3:61467991-61468010 | None:intergenic | 55.0% | |
| GCCGCGAGTGTTAAAAGTGG+GGG | - | chr2_3:61468017-61468036 | Msa0304170:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 61466321 | 61468110 | 61466321 | ID=Msa0304170;Name=Msa0304170 |
| chr2_3 | mRNA | 61466321 | 61468110 | 61466321 | ID=Msa0304170-mRNA-1;Parent=Msa0304170;Name=Msa0304170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=205|1|0.66|1|0|0|3|0|64 |
| chr2_3 | exon | 61466321 | 61466501 | 61466321 | ID=Msa0304170-mRNA-1:exon:20360;Parent=Msa0304170-mRNA-1 |
| chr2_3 | exon | 61466866 | 61467017 | 61466866 | ID=Msa0304170-mRNA-1:exon:20359;Parent=Msa0304170-mRNA-1 |
| chr2_3 | exon | 61468047 | 61468110 | 61468047 | ID=Msa0304170-mRNA-1:exon:20358;Parent=Msa0304170-mRNA-1 |
| chr2_3 | five_prime_UTR | 61468047 | 61468110 | 61468047 | ID=Msa0304170-mRNA-1:five_prime_utr;Parent=Msa0304170-mRNA-1 |
| chr2_3 | five_prime_UTR | 61466877 | 61467017 | 61466877 | ID=Msa0304170-mRNA-1:five_prime_utr;Parent=Msa0304170-mRNA-1 |
| chr2_3 | CDS | 61466866 | 61466876 | 61466866 | ID=Msa0304170-mRNA-1:cds;Parent=Msa0304170-mRNA-1 |
| chr2_3 | CDS | 61466321 | 61466501 | 61466321 | ID=Msa0304170-mRNA-1:cds;Parent=Msa0304170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
