Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485030 | KEH33239.1 | 69.182 | 159 | 45 | 1 | 7 | 165 | 1 | 155 | 3.45e-68 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485030 | sp|Q9FKI4|NAA10_ARATH | 35.714 | 154 | 89 | 3 | 19 | 162 | 2 | 155 | 2.15e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485030 | A0A072UTR7 | 69.182 | 159 | 45 | 1 | 7 | 165 | 1 | 155 | 1.65e-68 | 214 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0102070 | Msa0485030 | 0.849096 | 4.024889e-60 | -8.615850e-47 |
| Msa0145750 | Msa0485030 | 0.823025 | 1.729012e-53 | -8.615850e-47 |
| Msa0227480 | Msa0485030 | 0.812055 | 5.138713e-51 | -8.615850e-47 |
| Msa0232850 | Msa0485030 | 0.807231 | 5.591911e-50 | -8.615850e-47 |
| Msa0365500 | Msa0485030 | 0.806334 | 8.651097e-50 | -8.615850e-47 |
| Msa0384800 | Msa0485030 | 0.816377 | 5.706314e-52 | -8.615850e-47 |
| Msa0414410 | Msa0485030 | 0.835926 | 1.262591e-56 | -8.615850e-47 |
| Msa0414420 | Msa0485030 | 0.856781 | 2.551214e-62 | -8.615850e-47 |
| Msa0438620 | Msa0485030 | 0.804027 | 2.630974e-49 | -8.615850e-47 |
| Msa0452900 | Msa0485030 | 0.867678 | 1.146626e-65 | -8.615850e-47 |
| Msa0267000 | Msa0485030 | 0.830130 | 3.491871e-55 | -8.615850e-47 |
| Msa0267010 | Msa0485030 | 0.867439 | 1.367701e-65 | -8.615850e-47 |
| Msa0304170 | Msa0485030 | 0.806565 | 7.732451e-50 | -8.615850e-47 |
| Msa0342240 | Msa0485030 | 0.863392 | 2.572078e-64 | -8.615850e-47 |
| Msa0360510 | Msa0485030 | 0.814002 | 1.923317e-51 | -8.615850e-47 |
| Msa0485030 | Msa0491590 | 0.807860 | 4.112088e-50 | -8.615850e-47 |
| Msa0485030 | Msa0564890 | 0.840715 | 7.356527e-58 | -8.615850e-47 |
| Msa0485030 | Msa0725850 | 0.816083 | 6.637296e-52 | -8.615850e-47 |
| Msa0485030 | Msa0726140 | 0.847005 | 1.519886e-59 | -8.615850e-47 |
| Msa0485030 | Msa0743810 | 0.862745 | 4.075703e-64 | -8.615850e-47 |
| Msa0485030 | Msa0745060 | 0.838202 | 3.307934e-57 | -8.615850e-47 |
| Msa0485030 | Msa0767720 | 0.800188 | 1.620231e-48 | -8.615850e-47 |
| Msa0485030 | Msa0783160 | 0.848070 | 7.746124e-60 | -8.615850e-47 |
| Msa0485030 | Msa0787600 | 0.823748 | 1.171917e-53 | -8.615850e-47 |
| Msa0485030 | Msa0808010 | 0.813865 | 2.061234e-51 | -8.615850e-47 |
| Msa0485030 | Msa0808020 | 0.811434 | 7.014922e-51 | -8.615850e-47 |
| Msa0485030 | Msa0825860 | 0.845171 | 4.795233e-59 | -8.615850e-47 |
| Msa0485030 | Msa0845930 | 0.806866 | 6.680966e-50 | -8.615850e-47 |
| Msa0485030 | Msa0846330 | 0.843929 | 1.035341e-58 | -8.615850e-47 |
| Msa0485030 | Msa0846350 | 0.832316 | 1.013384e-55 | -8.615850e-47 |
| Msa0485030 | Msa0858980 | 0.810861 | 9.337988e-51 | -8.615850e-47 |
| Msa0485030 | Msa0865320 | 0.826343 | 2.857260e-54 | -8.615850e-47 |
| Msa0485030 | Msa0888370 | 0.800156 | 1.645116e-48 | -8.615850e-47 |
| Msa0485030 | Msa0981370 | 0.801458 | 8.918959e-49 | -8.615850e-47 |
| Msa0485030 | Msa0989060 | 0.815977 | 7.011774e-52 | -8.615850e-47 |
| Msa0485030 | Msa1016280 | 0.855795 | 4.963776e-62 | -8.615850e-47 |
| Msa0485030 | Msa1025360 | 0.866611 | 2.513068e-65 | -8.615850e-47 |
| Msa0485030 | Msa1025370 | 0.846748 | 1.787673e-59 | -8.615850e-47 |
| Msa0485030 | Msa1044830 | 0.835599 | 1.527813e-56 | -8.615850e-47 |
| Msa0485030 | Msa1044840 | 0.869115 | 3.942916e-66 | -8.615850e-47 |
| Msa0485030 | Msa1060840 | 0.829465 | 5.071672e-55 | -8.615850e-47 |
| Msa0485030 | Msa1092990 | 0.834965 | 2.208515e-56 | -8.615850e-47 |
| Msa0485030 | Msa1100980 | 0.847333 | 1.235637e-59 | -8.615850e-47 |
| Msa0485030 | Msa1109440 | 0.827640 | 1.398966e-54 | -8.615850e-47 |
| Msa0485030 | Msa1121200 | 0.817896 | 2.600106e-52 | -8.615850e-47 |
| Msa0485030 | Msa1135740 | 0.829267 | 5.664865e-55 | -8.615850e-47 |
| Msa0485030 | Msa1146110 | 0.819566 | 1.086059e-52 | -8.615850e-47 |
| Msa0485030 | Msa1150370 | 0.815742 | 7.910175e-52 | -8.615850e-47 |
| Msa0485030 | Msa1187940 | 0.817784 | 2.754797e-52 | -8.615850e-47 |
| Msa0485030 | Msa1192640 | 0.849078 | 4.072524e-60 | -8.615850e-47 |
| Msa0485030 | Msa1193730 | 0.830564 | 2.735092e-55 | -8.615850e-47 |
| Msa0485030 | Msa1269670 | 0.824693 | 7.029495e-54 | -8.615850e-47 |
| Msa0485030 | Msa1270230 | 0.848713 | 5.143873e-60 | -8.615850e-47 |
| Msa0485030 | Msa1270240 | 0.824898 | 6.289214e-54 | -8.615850e-47 |
| Msa0485030 | Msa1270270 | 0.818007 | 2.453977e-52 | -8.615850e-47 |
| Msa0485030 | Msa1283330 | 0.827561 | 1.461330e-54 | -8.615850e-47 |
| Msa0485030 | Msa1285930 | 0.856222 | 3.721599e-62 | -8.615850e-47 |
| Msa0485030 | Msa1287800 | 0.861940 | 7.207741e-64 | -8.615850e-47 |
| Msa0485030 | Msa1287810 | 0.867685 | 1.140910e-65 | -8.615850e-47 |
| Msa0485030 | Msa1289430 | 0.824673 | 7.105227e-54 | -8.615850e-47 |
| Msa0485030 | Msa1305480 | 0.824123 | 9.572114e-54 | -8.615850e-47 |
| Msa0485030 | Msa1307890 | 0.807703 | 4.441223e-50 | -8.615850e-47 |
| Msa0485030 | Msa1310120 | 0.802514 | 5.412401e-49 | -8.615850e-47 |
| Msa0485030 | Msa1320300 | 0.800037 | 1.739312e-48 | -8.615850e-47 |
| Msa0485030 | Msa1340590 | 0.810708 | 1.007818e-50 | -8.615850e-47 |
| Msa0485030 | Msa1397580 | 0.806599 | 7.605961e-50 | -8.615850e-47 |
| Msa0485030 | Msa1404000 | 0.865861 | 4.342963e-65 | -8.615850e-47 |
| Msa0485030 | Msa1408780 | 0.804785 | 1.828276e-49 | -8.615850e-47 |
| Msa0485030 | Msa1415310 | 0.837305 | 5.620333e-57 | -8.615850e-47 |
| Msa0485030 | Msa1422180 | 0.830301 | 3.172380e-55 | -8.615850e-47 |
| Msa0485030 | Msa1433120 | 0.817720 | 2.848550e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485030 | MtrunA17_Chr3g0088851 | 82.857 | 70 | 12 | 0 | 14 | 83 | 1 | 70 | 1.13e-37 | 125 |
| Msa0485030 | MtrunA17_Chr3g0090311 | 37.255 | 153 | 86 | 3 | 19 | 161 | 2 | 154 | 4.29e-19 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0485030 | AT5G13780.1 | 35.714 | 154 | 89 | 3 | 19 | 162 | 2 | 155 | 2.19e-17 | 75.9 |
Find 39 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTACCTGTTTCATGGTT+AGG | 0.232787 | 3_4:+2485339 | None:intergenic |
| TCACACAATGTGCCAATATT+CGG | 0.301530 | 3_4:+2485227 | None:intergenic |
| TGTTACTTGTACCTGTTTCA+TGG | 0.316305 | 3_4:+2485334 | None:intergenic |
| CTCGTTACTCGCCCGAATAT+TGG | 0.335099 | 3_4:-2485239 | Msa0485030:CDS |
| CACACAATGTGCCAATATTC+GGG | 0.341666 | 3_4:+2485228 | None:intergenic |
| GAGCTGCAGAGCTGCTCTTC+CGG | 0.343101 | 3_4:+2484378 | None:intergenic |
| TTGTACCTGTTTCATGGTTA+GGG | 0.349033 | 3_4:+2485340 | None:intergenic |
| TCATGGTTTGTTTGAGAAGA+TGG | 0.355483 | 3_4:-2484357 | Msa0485030:CDS |
| CTCCTCATCATCAAAATACT+TGG | 0.430148 | 3_4:+2484310 | None:intergenic |
| TAGAACCCTAACCATGAAAC+AGG | 0.443665 | 3_4:-2485345 | Msa0485030:CDS |
| CAATTAGAGACATATTAGAT+TGG | 0.477630 | 3_4:-2485277 | Msa0485030:CDS |
| CATAAACGTGGTATCGCTAC+TGG | 0.478227 | 3_4:-2485078 | Msa0485030:CDS |
| CATGGTTTGTTTGAGAAGAT+GGG | 0.488586 | 3_4:-2484356 | Msa0485030:CDS |
| TGATTGAAGGTGGGTGCTAA+AGG | 0.495589 | 3_4:-2484416 | Msa0485030:intron |
| AAGGTGTCTTAGTGCACGTC+CGG | 0.505450 | 3_4:-2484397 | Msa0485030:CDS |
| ATAGGTATGGTGAACGAAGA+GGG | 0.505881 | 3_4:+2485101 | None:intergenic |
| AGCGATACCACGTTTATGAT+AGG | 0.510597 | 3_4:+2485083 | None:intergenic |
| GTTGCTTATGTCCTCTCTGA+AGG | 0.513246 | 3_4:-2485164 | Msa0485030:CDS |
| AGTAACAATGTCGTCAAAGA+AGG | 0.537395 | 3_4:-2485318 | Msa0485030:CDS |
| ATAAAGAAACAAACCTTCCA+TGG | 0.546600 | 3_4:+2485032 | None:intergenic |
| GTCTTGAGGAAGATACTCAA+GGG | 0.554037 | 3_4:-2484278 | Msa0485030:CDS |
| AAGAGCAGCTCTGCAGCTCA+TGG | 0.554652 | 3_4:-2484374 | Msa0485030:CDS |
| TGTCTTGAGGAAGATACTCA+AGG | 0.562517 | 3_4:-2484279 | Msa0485030:CDS |
| TCTCTGAAGGTGAAGAGGTA+GGG | 0.563576 | 3_4:-2485151 | Msa0485030:CDS |
| AGGAGGATGCTATTGTCTTG+AGG | 0.572309 | 3_4:-2484292 | Msa0485030:CDS |
| CTCTCTGAAGGTGAAGAGGT+AGG | 0.572709 | 3_4:-2485152 | Msa0485030:CDS |
| GAAGCAATGCAATACTAAAG+TGG | 0.572833 | 3_4:+2485123 | None:intergenic |
| TTACACACTTCTCGAGGTGA+AGG | 0.585920 | 3_4:-2484333 | Msa0485030:CDS |
| TGTCCTCTCTGAAGGTGAAG+AGG | 0.587441 | 3_4:-2485156 | Msa0485030:CDS |
| GAAGGTGAAGAGGTAGGGAA+TGG | 0.598985 | 3_4:-2485146 | Msa0485030:CDS |
| TACCACGTTTATGATAGGTA+TGG | 0.610472 | 3_4:+2485088 | None:intergenic |
| GATAGGTATGGTGAACGAAG+AGG | 0.631106 | 3_4:+2485100 | None:intergenic |
| GAGTGGGTCTCACAGTTAGG+TGG | 0.634645 | 3_4:+2484244 | None:intergenic |
| CACCATACCTATCATAAACG+TGG | 0.650368 | 3_4:-2485090 | Msa0485030:CDS |
| CACGTCGCGGACGATTGTAG+CGG | 0.669793 | 3_4:-2485194 | Msa0485030:CDS |
| TCTTGAGGAAGATACTCAAG+GGG | 0.688967 | 3_4:-2484277 | Msa0485030:CDS |
| GATGGGTTACACACTTCTCG+AGG | 0.699417 | 3_4:-2484339 | Msa0485030:CDS |
| TGAAAAGCTTCTTCACGTCG+CGG | 0.707390 | 3_4:-2485207 | Msa0485030:CDS |
| CTACCTCTTCACCTTCAGAG+AGG | 0.722508 | 3_4:+2485153 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTGTTATAATCTTGTTTTT+TGG | - | chr3_4:2484600-2484619 | Msa0485030:intron | 20.0% |
| !!! | ATAATCTTGTTTTTTGGATT+AGG | - | chr3_4:2484606-2484625 | Msa0485030:intron | 20.0% |
| !!! | TATGTATGGAGTTATTTTAA+TGG | - | chr3_4:2484681-2484700 | Msa0485030:intron | 20.0% |
| !!! | TTTCTTTTTGTTAGTGATTT+TGG | - | chr3_4:2484977-2484996 | Msa0485030:intron | 20.0% |
| !!! | TCTGTTATAATCTTGTTTTT+TGG | - | chr3_4:2484600-2484619 | Msa0485030:intron | 20.0% |
| !!! | ATAATCTTGTTTTTTGGATT+AGG | - | chr3_4:2484606-2484625 | Msa0485030:intron | 20.0% |
| !!! | TATGTATGGAGTTATTTTAA+TGG | - | chr3_4:2484681-2484700 | Msa0485030:intron | 20.0% |
| !!! | TTTCTTTTTGTTAGTGATTT+TGG | - | chr3_4:2484977-2484996 | Msa0485030:intron | 20.0% |
| ! | CAATTAGAGACATATTAGAT+TGG | - | chr3_4:2484332-2484351 | Msa0485030:CDS | 25.0% |
| !!! | ATGGAGTTATTTTAATGGTT+AGG | - | chr3_4:2484686-2484705 | Msa0485030:intron | 25.0% |
| !!! | TTTATGTAGTTAGTCTTGTA+TGG | - | chr3_4:2485019-2485038 | Msa0485030:intron | 25.0% |
| !!! | TTATGTAGTTAGTCTTGTAT+GGG | - | chr3_4:2485020-2485039 | Msa0485030:intron | 25.0% |
| ! | GAAAACCAAAAGAAAAATCT+CGG | + | chr3_4:2485061-2485080 | None:intergenic | 25.0% |
| ! | ACAACCAAAAACATCAAAAA+AGG | + | chr3_4:2485156-2485175 | None:intergenic | 25.0% |
| ! | ACAATGTGTAATTTGATTGA+AGG | - | chr3_4:2485180-2485199 | Msa0485030:CDS | 25.0% |
| ! | CAATTAGAGACATATTAGAT+TGG | - | chr3_4:2484332-2484351 | Msa0485030:CDS | 25.0% |
| !!! | ATGGAGTTATTTTAATGGTT+AGG | - | chr3_4:2484686-2484705 | Msa0485030:intron | 25.0% |
| !!! | TTTATGTAGTTAGTCTTGTA+TGG | - | chr3_4:2485019-2485038 | Msa0485030:intron | 25.0% |
| !!! | TTATGTAGTTAGTCTTGTAT+GGG | - | chr3_4:2485020-2485039 | Msa0485030:intron | 25.0% |
| ! | GAAAACCAAAAGAAAAATCT+CGG | + | chr3_4:2485061-2485080 | None:intergenic | 25.0% |
| ! | ACAACCAAAAACATCAAAAA+AGG | + | chr3_4:2485156-2485175 | None:intergenic | 25.0% |
| ! | ACAATGTGTAATTTGATTGA+AGG | - | chr3_4:2485180-2485199 | Msa0485030:CDS | 25.0% |
| ATAAAGAAACAAACCTTCCA+TGG | + | chr3_4:2484580-2484599 | None:intergenic | 30.0% | |
| TCCATACATAACCAGTTAAA+AGG | + | chr3_4:2484671-2484690 | None:intergenic | 30.0% | |
| AGAAAACAGAAAATCACCAT+GGG | + | chr3_4:2484805-2484824 | None:intergenic | 30.0% | |
| ! | CTTTTTGTTAGTGATTTTGG+TGG | - | chr3_4:2484980-2484999 | Msa0485030:intron | 30.0% |
| !! | TATGTAGTTAGTCTTGTATG+GGG | - | chr3_4:2485021-2485040 | Msa0485030:intron | 30.0% |
| ! | TTTCTTGTTTCCTAATCTTG+TGG | - | chr3_4:2485077-2485096 | Msa0485030:CDS | 30.0% |
| !!! | CTGACCTTTTTTGATGTTTT+TGG | - | chr3_4:2485149-2485168 | Msa0485030:CDS | 30.0% |
| ATGTGTAATTTGATTGAAGG+TGG | - | chr3_4:2485183-2485202 | Msa0485030:CDS | 30.0% | |
| TGTGTAATTTGATTGAAGGT+GGG | - | chr3_4:2485184-2485203 | Msa0485030:CDS | 30.0% | |
| ATAAAGAAACAAACCTTCCA+TGG | + | chr3_4:2484580-2484599 | None:intergenic | 30.0% | |
| TCCATACATAACCAGTTAAA+AGG | + | chr3_4:2484671-2484690 | None:intergenic | 30.0% | |
| AGAAAACAGAAAATCACCAT+GGG | + | chr3_4:2484805-2484824 | None:intergenic | 30.0% | |
| ! | CTTTTTGTTAGTGATTTTGG+TGG | - | chr3_4:2484980-2484999 | Msa0485030:intron | 30.0% |
| !! | TATGTAGTTAGTCTTGTATG+GGG | - | chr3_4:2485021-2485040 | Msa0485030:intron | 30.0% |
| ! | TTTCTTGTTTCCTAATCTTG+TGG | - | chr3_4:2485077-2485096 | Msa0485030:CDS | 30.0% |
| !!! | CTGACCTTTTTTGATGTTTT+TGG | - | chr3_4:2485149-2485168 | Msa0485030:CDS | 30.0% |
| ATGTGTAATTTGATTGAAGG+TGG | - | chr3_4:2485183-2485202 | Msa0485030:CDS | 30.0% | |
| TGTGTAATTTGATTGAAGGT+GGG | - | chr3_4:2485184-2485203 | Msa0485030:CDS | 30.0% | |
| TTGTACCTGTTTCATGGTTA+GGG | + | chr3_4:2484272-2484291 | None:intergenic | 35.0% | |
| ! | TGTTACTTGTACCTGTTTCA+TGG | + | chr3_4:2484278-2484297 | None:intergenic | 35.0% |
| AGTAACAATGTCGTCAAAGA+AGG | - | chr3_4:2484291-2484310 | Msa0485030:CDS | 35.0% | |
| TCACACAATGTGCCAATATT+CGG | + | chr3_4:2484385-2484404 | None:intergenic | 35.0% | |
| GAAGCAATGCAATACTAAAG+TGG | + | chr3_4:2484489-2484508 | None:intergenic | 35.0% | |
| TACCACGTTTATGATAGGTA+TGG | + | chr3_4:2484524-2484543 | None:intergenic | 35.0% | |
| !! | GCCTTTTAACTGGTTATGTA+TGG | - | chr3_4:2484667-2484686 | Msa0485030:intron | 35.0% |
| TAATGGTTAGGTATGAAGCT+TGG | - | chr3_4:2484698-2484717 | Msa0485030:intron | 35.0% | |
| CAGAAAACAGAAAATCACCA+TGG | + | chr3_4:2484806-2484825 | None:intergenic | 35.0% | |
| ! | CATGGTGATTTTCTGTTTTC+TGG | - | chr3_4:2484804-2484823 | Msa0485030:intron | 35.0% |
| CTAGGATTATCATCTATTCC+TGG | - | chr3_4:2484848-2484867 | Msa0485030:intron | 35.0% | |
| TTATCATCTATTCCTGGAAG+TGG | - | chr3_4:2484854-2484873 | Msa0485030:intron | 35.0% | |
| !! | TTGTTAGTGATTTTGGTGGT+TGG | - | chr3_4:2484984-2485003 | Msa0485030:intron | 35.0% |
| !! | TGTTAGTGATTTTGGTGGTT+GGG | - | chr3_4:2484985-2485004 | Msa0485030:intron | 35.0% |
| AACCAAAAGAAAAATCTCGG+AGG | + | chr3_4:2485058-2485077 | None:intergenic | 35.0% | |
| !! | TCATGGTTTGTTTGAGAAGA+TGG | - | chr3_4:2485252-2485271 | Msa0485030:CDS | 35.0% |
| !! | CATGGTTTGTTTGAGAAGAT+GGG | - | chr3_4:2485253-2485272 | Msa0485030:CDS | 35.0% |
| CTCCTCATCATCAAAATACT+TGG | + | chr3_4:2485302-2485321 | None:intergenic | 35.0% | |
| !!! | CAAGTATTTTGATGATGAGG+AGG | - | chr3_4:2485300-2485319 | Msa0485030:CDS | 35.0% |
| TTGTACCTGTTTCATGGTTA+GGG | + | chr3_4:2484272-2484291 | None:intergenic | 35.0% | |
| ! | TGTTACTTGTACCTGTTTCA+TGG | + | chr3_4:2484278-2484297 | None:intergenic | 35.0% |
| AGTAACAATGTCGTCAAAGA+AGG | - | chr3_4:2484291-2484310 | Msa0485030:CDS | 35.0% | |
| TCACACAATGTGCCAATATT+CGG | + | chr3_4:2484385-2484404 | None:intergenic | 35.0% | |
| GAAGCAATGCAATACTAAAG+TGG | + | chr3_4:2484489-2484508 | None:intergenic | 35.0% | |
| TACCACGTTTATGATAGGTA+TGG | + | chr3_4:2484524-2484543 | None:intergenic | 35.0% | |
| !! | GCCTTTTAACTGGTTATGTA+TGG | - | chr3_4:2484667-2484686 | Msa0485030:intron | 35.0% |
| TAATGGTTAGGTATGAAGCT+TGG | - | chr3_4:2484698-2484717 | Msa0485030:intron | 35.0% | |
| CAGAAAACAGAAAATCACCA+TGG | + | chr3_4:2484806-2484825 | None:intergenic | 35.0% | |
| ! | CATGGTGATTTTCTGTTTTC+TGG | - | chr3_4:2484804-2484823 | Msa0485030:intron | 35.0% |
| CTAGGATTATCATCTATTCC+TGG | - | chr3_4:2484848-2484867 | Msa0485030:intron | 35.0% | |
| TTATCATCTATTCCTGGAAG+TGG | - | chr3_4:2484854-2484873 | Msa0485030:intron | 35.0% | |
| !! | TTGTTAGTGATTTTGGTGGT+TGG | - | chr3_4:2484984-2485003 | Msa0485030:intron | 35.0% |
| !! | TGTTAGTGATTTTGGTGGTT+GGG | - | chr3_4:2484985-2485004 | Msa0485030:intron | 35.0% |
| AACCAAAAGAAAAATCTCGG+AGG | + | chr3_4:2485058-2485077 | None:intergenic | 35.0% | |
| !! | TCATGGTTTGTTTGAGAAGA+TGG | - | chr3_4:2485252-2485271 | Msa0485030:CDS | 35.0% |
| !! | CATGGTTTGTTTGAGAAGAT+GGG | - | chr3_4:2485253-2485272 | Msa0485030:CDS | 35.0% |
| CTCCTCATCATCAAAATACT+TGG | + | chr3_4:2485302-2485321 | None:intergenic | 35.0% | |
| !!! | CAAGTATTTTGATGATGAGG+AGG | - | chr3_4:2485300-2485319 | Msa0485030:CDS | 35.0% |
| TAGAACCCTAACCATGAAAC+AGG | - | chr3_4:2484264-2484283 | Msa0485030:CDS | 40.0% | |
| CTTGTACCTGTTTCATGGTT+AGG | + | chr3_4:2484273-2484292 | None:intergenic | 40.0% | |
| CACACAATGTGCCAATATTC+GGG | + | chr3_4:2484384-2484403 | None:intergenic | 40.0% | |
| ATAGGTATGGTGAACGAAGA+GGG | + | chr3_4:2484511-2484530 | None:intergenic | 40.0% | |
| CACCATACCTATCATAAACG+TGG | - | chr3_4:2484519-2484538 | Msa0485030:intron | 40.0% | |
| AGCGATACCACGTTTATGAT+AGG | + | chr3_4:2484529-2484548 | None:intergenic | 40.0% | |
| ! | CAAACCTTCCATGGTGTTTT+TGG | + | chr3_4:2484571-2484590 | None:intergenic | 40.0% |
| ! | GGATTAGGTTTGTCACTTGT+CGG | - | chr3_4:2484621-2484640 | Msa0485030:intron | 40.0% |
| ! | TCACTTGTCGGTTAGTGTAT+AGG | - | chr3_4:2484633-2484652 | Msa0485030:intron | 40.0% |
| ! | CACTTGTCGGTTAGTGTATA+GGG | - | chr3_4:2484634-2484653 | Msa0485030:intron | 40.0% |
| TAGTGTATAGGGTGTGGTAT+AGG | - | chr3_4:2484645-2484664 | Msa0485030:intron | 40.0% | |
| ! | TGTGGTATAGGCCTTTTAAC+TGG | - | chr3_4:2484657-2484676 | Msa0485030:intron | 40.0% |
| GTTAGGTATGAAGCTTGGTT+CGG | - | chr3_4:2484703-2484722 | Msa0485030:intron | 40.0% | |
| !! | TTGGTTCGGTTGTTTCGTTA+GGG | - | chr3_4:2484717-2484736 | Msa0485030:intron | 40.0% |
| TGGGTTTATAGATCACACAG+TGG | + | chr3_4:2484786-2484805 | None:intergenic | 40.0% | |
| CTGTGTGATCTATAAACCCA+TGG | - | chr3_4:2484786-2484805 | Msa0485030:intron | 40.0% | |
| GGTAGAATCTGAGTTTCACT+AGG | - | chr3_4:2484825-2484844 | Msa0485030:intron | 40.0% | |
| AATCTGAGTTTCACTAGGCT+AGG | - | chr3_4:2484830-2484849 | Msa0485030:intron | 40.0% | |
| TATTCCTGGAAGTGGTTCTT+CGG | - | chr3_4:2484862-2484881 | Msa0485030:intron | 40.0% | |
| TAAAGGGAGTGGCAATGATT+CGG | + | chr3_4:2484895-2484914 | None:intergenic | 40.0% | |
| ! | TTTTGCCTCCCACTCATAAA+GGG | + | chr3_4:2484911-2484930 | None:intergenic | 40.0% |
| AGGCAAAACCAATTCTCTGT+GGG | - | chr3_4:2484923-2484942 | Msa0485030:intron | 40.0% | |
| !! | GTTAGTGATTTTGGTGGTTG+GGG | - | chr3_4:2484986-2485005 | Msa0485030:intron | 40.0% |
| ! | GTCCTCCGAGATTTTTCTTT+TGG | - | chr3_4:2485053-2485072 | Msa0485030:CDS | 40.0% |
| TGTTTCCTAATCTTGTGGTG+CGG | - | chr3_4:2485082-2485101 | Msa0485030:CDS | 40.0% | |
| AAAATCCGCACCACAAGATT+AGG | + | chr3_4:2485090-2485109 | None:intergenic | 40.0% | |
| !!! | GGCCAAGTATTTTGATGATG+AGG | - | chr3_4:2485297-2485316 | Msa0485030:CDS | 40.0% |
| TGTCTTGAGGAAGATACTCA+AGG | - | chr3_4:2485330-2485349 | Msa0485030:CDS | 40.0% | |
| GTCTTGAGGAAGATACTCAA+GGG | - | chr3_4:2485331-2485350 | Msa0485030:CDS | 40.0% | |
| TCTTGAGGAAGATACTCAAG+GGG | - | chr3_4:2485332-2485351 | Msa0485030:CDS | 40.0% | |
| TAGAACCCTAACCATGAAAC+AGG | - | chr3_4:2484264-2484283 | Msa0485030:CDS | 40.0% | |
| CTTGTACCTGTTTCATGGTT+AGG | + | chr3_4:2484273-2484292 | None:intergenic | 40.0% | |
| CACACAATGTGCCAATATTC+GGG | + | chr3_4:2484384-2484403 | None:intergenic | 40.0% | |
| ATAGGTATGGTGAACGAAGA+GGG | + | chr3_4:2484511-2484530 | None:intergenic | 40.0% | |
| CACCATACCTATCATAAACG+TGG | - | chr3_4:2484519-2484538 | Msa0485030:intron | 40.0% | |
| AGCGATACCACGTTTATGAT+AGG | + | chr3_4:2484529-2484548 | None:intergenic | 40.0% | |
| ! | CAAACCTTCCATGGTGTTTT+TGG | + | chr3_4:2484571-2484590 | None:intergenic | 40.0% |
| ! | GGATTAGGTTTGTCACTTGT+CGG | - | chr3_4:2484621-2484640 | Msa0485030:intron | 40.0% |
| ! | TCACTTGTCGGTTAGTGTAT+AGG | - | chr3_4:2484633-2484652 | Msa0485030:intron | 40.0% |
| ! | CACTTGTCGGTTAGTGTATA+GGG | - | chr3_4:2484634-2484653 | Msa0485030:intron | 40.0% |
| TAGTGTATAGGGTGTGGTAT+AGG | - | chr3_4:2484645-2484664 | Msa0485030:intron | 40.0% | |
| ! | TGTGGTATAGGCCTTTTAAC+TGG | - | chr3_4:2484657-2484676 | Msa0485030:intron | 40.0% |
| GTTAGGTATGAAGCTTGGTT+CGG | - | chr3_4:2484703-2484722 | Msa0485030:intron | 40.0% | |
| !! | TTGGTTCGGTTGTTTCGTTA+GGG | - | chr3_4:2484717-2484736 | Msa0485030:intron | 40.0% |
| TGGGTTTATAGATCACACAG+TGG | + | chr3_4:2484786-2484805 | None:intergenic | 40.0% | |
| CTGTGTGATCTATAAACCCA+TGG | - | chr3_4:2484786-2484805 | Msa0485030:intron | 40.0% | |
| GGTAGAATCTGAGTTTCACT+AGG | - | chr3_4:2484825-2484844 | Msa0485030:intron | 40.0% | |
| AATCTGAGTTTCACTAGGCT+AGG | - | chr3_4:2484830-2484849 | Msa0485030:intron | 40.0% | |
| TATTCCTGGAAGTGGTTCTT+CGG | - | chr3_4:2484862-2484881 | Msa0485030:intron | 40.0% | |
| TAAAGGGAGTGGCAATGATT+CGG | + | chr3_4:2484895-2484914 | None:intergenic | 40.0% | |
| ! | TTTTGCCTCCCACTCATAAA+GGG | + | chr3_4:2484911-2484930 | None:intergenic | 40.0% |
| AGGCAAAACCAATTCTCTGT+GGG | - | chr3_4:2484923-2484942 | Msa0485030:intron | 40.0% | |
| !! | GTTAGTGATTTTGGTGGTTG+GGG | - | chr3_4:2484986-2485005 | Msa0485030:intron | 40.0% |
| ! | GTCCTCCGAGATTTTTCTTT+TGG | - | chr3_4:2485053-2485072 | Msa0485030:CDS | 40.0% |
| TGTTTCCTAATCTTGTGGTG+CGG | - | chr3_4:2485082-2485101 | Msa0485030:CDS | 40.0% | |
| AAAATCCGCACCACAAGATT+AGG | + | chr3_4:2485090-2485109 | None:intergenic | 40.0% | |
| !!! | GGCCAAGTATTTTGATGATG+AGG | - | chr3_4:2485297-2485316 | Msa0485030:CDS | 40.0% |
| TGTCTTGAGGAAGATACTCA+AGG | - | chr3_4:2485330-2485349 | Msa0485030:CDS | 40.0% | |
| GTCTTGAGGAAGATACTCAA+GGG | - | chr3_4:2485331-2485350 | Msa0485030:CDS | 40.0% | |
| TCTTGAGGAAGATACTCAAG+GGG | - | chr3_4:2485332-2485351 | Msa0485030:CDS | 40.0% | |
| TGAAAAGCTTCTTCACGTCG+CGG | - | chr3_4:2484402-2484421 | Msa0485030:CDS | 45.0% | |
| GTTGCTTATGTCCTCTCTGA+AGG | - | chr3_4:2484445-2484464 | Msa0485030:intron | 45.0% | |
| ! | TCTCTGAAGGTGAAGAGGTA+GGG | - | chr3_4:2484458-2484477 | Msa0485030:intron | 45.0% |
| GATAGGTATGGTGAACGAAG+AGG | + | chr3_4:2484512-2484531 | None:intergenic | 45.0% | |
| CATAAACGTGGTATCGCTAC+TGG | - | chr3_4:2484531-2484550 | Msa0485030:intron | 45.0% | |
| !!! | ACCTTCCATGGTGTTTTTGG+CGG | + | chr3_4:2484568-2484587 | None:intergenic | 45.0% |
| !! | CTTGGTTCGGTTGTTTCGTT+AGG | - | chr3_4:2484716-2484735 | Msa0485030:intron | 45.0% |
| !! | TGGTTCGGTTGTTTCGTTAG+GGG | - | chr3_4:2484718-2484737 | Msa0485030:intron | 45.0% |
| AAAGGGAGTGGCAATGATTC+GGG | + | chr3_4:2484894-2484913 | None:intergenic | 45.0% | |
| ATTGCCACTCCCTTTATGAG+TGG | - | chr3_4:2484899-2484918 | Msa0485030:intron | 45.0% | |
| TTGCCACTCCCTTTATGAGT+GGG | - | chr3_4:2484900-2484919 | Msa0485030:intron | 45.0% | |
| ! | GTTTTGCCTCCCACTCATAA+AGG | + | chr3_4:2484912-2484931 | None:intergenic | 45.0% |
| GAGGCAAAACCAATTCTCTG+TGG | - | chr3_4:2484922-2484941 | Msa0485030:intron | 45.0% | |
| GGCAAAACCAATTCTCTGTG+GGG | - | chr3_4:2484924-2484943 | Msa0485030:intron | 45.0% | |
| AACACTTCCCCACAGAGAAT+TGG | + | chr3_4:2484934-2484953 | None:intergenic | 45.0% | |
| !!! | TCTCTGTGGGGAAGTGTTTT+TGG | - | chr3_4:2484936-2484955 | Msa0485030:intron | 45.0% |
| ! | TTGTGGTGCGGATTTTCTCT+AGG | - | chr3_4:2485094-2485113 | Msa0485030:CDS | 45.0% |
| TGATTGAAGGTGGGTGCTAA+AGG | - | chr3_4:2485193-2485212 | Msa0485030:CDS | 45.0% | |
| TTACACACTTCTCGAGGTGA+AGG | - | chr3_4:2485276-2485295 | Msa0485030:CDS | 45.0% | |
| AGGAGGATGCTATTGTCTTG+AGG | - | chr3_4:2485317-2485336 | Msa0485030:CDS | 45.0% | |
| TGAAAAGCTTCTTCACGTCG+CGG | - | chr3_4:2484402-2484421 | Msa0485030:CDS | 45.0% | |
| GTTGCTTATGTCCTCTCTGA+AGG | - | chr3_4:2484445-2484464 | Msa0485030:intron | 45.0% | |
| ! | TCTCTGAAGGTGAAGAGGTA+GGG | - | chr3_4:2484458-2484477 | Msa0485030:intron | 45.0% |
| GATAGGTATGGTGAACGAAG+AGG | + | chr3_4:2484512-2484531 | None:intergenic | 45.0% | |
| CATAAACGTGGTATCGCTAC+TGG | - | chr3_4:2484531-2484550 | Msa0485030:intron | 45.0% | |
| !!! | ACCTTCCATGGTGTTTTTGG+CGG | + | chr3_4:2484568-2484587 | None:intergenic | 45.0% |
| !! | CTTGGTTCGGTTGTTTCGTT+AGG | - | chr3_4:2484716-2484735 | Msa0485030:intron | 45.0% |
| !! | TGGTTCGGTTGTTTCGTTAG+GGG | - | chr3_4:2484718-2484737 | Msa0485030:intron | 45.0% |
| AAAGGGAGTGGCAATGATTC+GGG | + | chr3_4:2484894-2484913 | None:intergenic | 45.0% | |
| ATTGCCACTCCCTTTATGAG+TGG | - | chr3_4:2484899-2484918 | Msa0485030:intron | 45.0% | |
| TTGCCACTCCCTTTATGAGT+GGG | - | chr3_4:2484900-2484919 | Msa0485030:intron | 45.0% | |
| ! | GTTTTGCCTCCCACTCATAA+AGG | + | chr3_4:2484912-2484931 | None:intergenic | 45.0% |
| GAGGCAAAACCAATTCTCTG+TGG | - | chr3_4:2484922-2484941 | Msa0485030:intron | 45.0% | |
| GGCAAAACCAATTCTCTGTG+GGG | - | chr3_4:2484924-2484943 | Msa0485030:intron | 45.0% | |
| AACACTTCCCCACAGAGAAT+TGG | + | chr3_4:2484934-2484953 | None:intergenic | 45.0% | |
| !!! | TCTCTGTGGGGAAGTGTTTT+TGG | - | chr3_4:2484936-2484955 | Msa0485030:intron | 45.0% |
| ! | TTGTGGTGCGGATTTTCTCT+AGG | - | chr3_4:2485094-2485113 | Msa0485030:CDS | 45.0% |
| TGATTGAAGGTGGGTGCTAA+AGG | - | chr3_4:2485193-2485212 | Msa0485030:CDS | 45.0% | |
| TTACACACTTCTCGAGGTGA+AGG | - | chr3_4:2485276-2485295 | Msa0485030:CDS | 45.0% | |
| AGGAGGATGCTATTGTCTTG+AGG | - | chr3_4:2485317-2485336 | Msa0485030:CDS | 45.0% | |
| CTCGTTACTCGCCCGAATAT+TGG | - | chr3_4:2484370-2484389 | Msa0485030:CDS | 50.0% | |
| ! | TGTCCTCTCTGAAGGTGAAG+AGG | - | chr3_4:2484453-2484472 | Msa0485030:intron | 50.0% |
| CTACCTCTTCACCTTCAGAG+AGG | + | chr3_4:2484459-2484478 | None:intergenic | 50.0% | |
| ! | CTCTCTGAAGGTGAAGAGGT+AGG | - | chr3_4:2484457-2484476 | Msa0485030:intron | 50.0% |
| GAAGGTGAAGAGGTAGGGAA+TGG | - | chr3_4:2484463-2484482 | Msa0485030:intron | 50.0% | |
| !!! | TTCCATGGTGTTTTTGGCGG+CGG | + | chr3_4:2484565-2484584 | None:intergenic | 50.0% |
| GTCGGTTAGTGTATAGGGTG+TGG | - | chr3_4:2484639-2484658 | Msa0485030:intron | 50.0% | |
| ! | TTCGGTTGTTTCGTTAGGGG+TGG | - | chr3_4:2484721-2484740 | Msa0485030:intron | 50.0% |
| ! | TCGGTTGTTTCGTTAGGGGT+GGG | - | chr3_4:2484722-2484741 | Msa0485030:intron | 50.0% |
| TTGTTTCGTTAGGGGTGGGA+AGG | - | chr3_4:2484726-2484745 | Msa0485030:intron | 50.0% | |
| TTCACCGAAGAACCACTTCC+AGG | + | chr3_4:2484869-2484888 | None:intergenic | 50.0% | |
| !! | GTCTTGTATGGGGAGTGTTC+TGG | - | chr3_4:2485031-2485050 | Msa0485030:intron | 50.0% |
| TACAACAGCTGCAGGTCTCA+AGG | + | chr3_4:2485129-2485148 | None:intergenic | 50.0% | |
| AAGGTCAGTACAACAGCTGC+AGG | + | chr3_4:2485137-2485156 | None:intergenic | 50.0% | |
| ! | AAGGTGTCTTAGTGCACGTC+CGG | - | chr3_4:2485212-2485231 | Msa0485030:CDS | 50.0% |
| !! | GATGGGTTACACACTTCTCG+AGG | - | chr3_4:2485270-2485289 | Msa0485030:CDS | 50.0% |
| CTCGTTACTCGCCCGAATAT+TGG | - | chr3_4:2484370-2484389 | Msa0485030:CDS | 50.0% | |
| ! | TGTCCTCTCTGAAGGTGAAG+AGG | - | chr3_4:2484453-2484472 | Msa0485030:intron | 50.0% |
| CTACCTCTTCACCTTCAGAG+AGG | + | chr3_4:2484459-2484478 | None:intergenic | 50.0% | |
| ! | CTCTCTGAAGGTGAAGAGGT+AGG | - | chr3_4:2484457-2484476 | Msa0485030:intron | 50.0% |
| GAAGGTGAAGAGGTAGGGAA+TGG | - | chr3_4:2484463-2484482 | Msa0485030:intron | 50.0% | |
| !!! | TTCCATGGTGTTTTTGGCGG+CGG | + | chr3_4:2484565-2484584 | None:intergenic | 50.0% |
| GTCGGTTAGTGTATAGGGTG+TGG | - | chr3_4:2484639-2484658 | Msa0485030:intron | 50.0% | |
| ! | TTCGGTTGTTTCGTTAGGGG+TGG | - | chr3_4:2484721-2484740 | Msa0485030:intron | 50.0% |
| ! | TCGGTTGTTTCGTTAGGGGT+GGG | - | chr3_4:2484722-2484741 | Msa0485030:intron | 50.0% |
| TTGTTTCGTTAGGGGTGGGA+AGG | - | chr3_4:2484726-2484745 | Msa0485030:intron | 50.0% | |
| TTCACCGAAGAACCACTTCC+AGG | + | chr3_4:2484869-2484888 | None:intergenic | 50.0% | |
| !! | GTCTTGTATGGGGAGTGTTC+TGG | - | chr3_4:2485031-2485050 | Msa0485030:intron | 50.0% |
| TACAACAGCTGCAGGTCTCA+AGG | + | chr3_4:2485129-2485148 | None:intergenic | 50.0% | |
| AAGGTCAGTACAACAGCTGC+AGG | + | chr3_4:2485137-2485156 | None:intergenic | 50.0% | |
| ! | AAGGTGTCTTAGTGCACGTC+CGG | - | chr3_4:2485212-2485231 | Msa0485030:CDS | 50.0% |
| !! | GATGGGTTACACACTTCTCG+AGG | - | chr3_4:2485270-2485289 | Msa0485030:CDS | 50.0% |
| GCCGCCAAAAACACCATGGA+AGG | - | chr3_4:2484564-2484583 | Msa0485030:intron | 55.0% | |
| CCTCCCACTCATAAAGGGAG+TGG | + | chr3_4:2484906-2484925 | None:intergenic | 55.0% | |
| CCACTCCCTTTATGAGTGGG+AGG | - | chr3_4:2484903-2484922 | Msa0485030:intron | 55.0% | |
| AAGAGCAGCTCTGCAGCTCA+TGG | - | chr3_4:2485235-2485254 | Msa0485030:CDS | 55.0% | |
| GCCGCCAAAAACACCATGGA+AGG | - | chr3_4:2484564-2484583 | Msa0485030:intron | 55.0% | |
| CCTCCCACTCATAAAGGGAG+TGG | + | chr3_4:2484906-2484925 | None:intergenic | 55.0% | |
| CCACTCCCTTTATGAGTGGG+AGG | - | chr3_4:2484903-2484922 | Msa0485030:intron | 55.0% | |
| AAGAGCAGCTCTGCAGCTCA+TGG | - | chr3_4:2485235-2485254 | Msa0485030:CDS | 55.0% | |
| CACGTCGCGGACGATTGTAG+CGG | - | chr3_4:2484415-2484434 | Msa0485030:intron | 60.0% | |
| CACCGCCGCCAAAAACACCA+TGG | - | chr3_4:2484560-2484579 | Msa0485030:intron | 60.0% | |
| TAGGGGTGGGAAGGCAGAGT+AGG | - | chr3_4:2484735-2484754 | Msa0485030:intron | 60.0% | |
| GTGGGAAGGCAGAGTAGGCT+AGG | - | chr3_4:2484740-2484759 | Msa0485030:intron | 60.0% | |
| GAGCTGCAGAGCTGCTCTTC+CGG | + | chr3_4:2485234-2485253 | None:intergenic | 60.0% | |
| CACGTCGCGGACGATTGTAG+CGG | - | chr3_4:2484415-2484434 | Msa0485030:intron | 60.0% | |
| CACCGCCGCCAAAAACACCA+TGG | - | chr3_4:2484560-2484579 | Msa0485030:intron | 60.0% | |
| TAGGGGTGGGAAGGCAGAGT+AGG | - | chr3_4:2484735-2484754 | Msa0485030:intron | 60.0% | |
| GTGGGAAGGCAGAGTAGGCT+AGG | - | chr3_4:2484740-2484759 | Msa0485030:intron | 60.0% | |
| GAGCTGCAGAGCTGCTCTTC+CGG | + | chr3_4:2485234-2485253 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 2484259 | 2485372 | 2484259 | ID=Msa0485030;Name=Msa0485030 |
| chr3_4 | mRNA | 2484259 | 2485372 | 2484259 | ID=Msa0485030-mRNA-1;Parent=Msa0485030;Name=Msa0485030-mRNA-1;_AED=0.13;_eAED=0.16;_QI=0|0|0|1|1|1|2|0|165 |
| chr3_4 | exon | 2485046 | 2485372 | 2485046 | ID=Msa0485030-mRNA-1:exon:861;Parent=Msa0485030-mRNA-1 |
| chr3_4 | exon | 2484259 | 2484429 | 2484259 | ID=Msa0485030-mRNA-1:exon:860;Parent=Msa0485030-mRNA-1 |
| chr3_4 | CDS | 2485046 | 2485372 | 2485046 | ID=Msa0485030-mRNA-1:cds;Parent=Msa0485030-mRNA-1 |
| chr3_4 | CDS | 2484259 | 2484429 | 2484259 | ID=Msa0485030-mRNA-1:cds;Parent=Msa0485030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
