AlfalfaGEDB | Msa0485030

M. sativa cultivar zhongmu-4 / Msa0485030

KEGG: K00670|K20791
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0485030	KEH33239.1	69.182	159	45	1	7	165	1	155	3.45e-68	214

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0485030	sp\|Q9FKI4\|NAA10_ARATH	35.714	154	89	3	19	162	2	155	2.15e-16	75.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0485030	A0A072UTR7	69.182	159	45	1	7	165	1	155	1.65e-68	214

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0102070	Msa0485030	0.849096	4.024889e-60	-8.615850e-47
Msa0145750	Msa0485030	0.823025	1.729012e-53	-8.615850e-47
Msa0227480	Msa0485030	0.812055	5.138713e-51	-8.615850e-47
Msa0232850	Msa0485030	0.807231	5.591911e-50	-8.615850e-47
Msa0267000	Msa0485030	0.830130	3.491871e-55	-8.615850e-47
Msa0267010	Msa0485030	0.867439	1.367701e-65	-8.615850e-47
Msa0304170	Msa0485030	0.806565	7.732451e-50	-8.615850e-47
Msa0342240	Msa0485030	0.863392	2.572078e-64	-8.615850e-47
Msa0360510	Msa0485030	0.814002	1.923317e-51	-8.615850e-47
Msa0365500	Msa0485030	0.806334	8.651097e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0485030	MtrunA17_Chr3g0088851	82.857	70	12	0	14	83	1	70	1.13e-37	125
Msa0485030	MtrunA17_Chr3g0090311	37.255	153	86	3	19	161	2	154	4.29e-19	79.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0485030	AT5G13780.1	35.714	154	89	3	19	162	2	155	2.19e-17	75.9

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Find 39 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGCAGCTCTGCAGCTCA+TGG	0.554652	3_4:-2484374	Msa0485030:CDS
AAGGTGTCTTAGTGCACGTC+CGG	0.505450	3_4:-2484397	Msa0485030:CDS
AGCGATACCACGTTTATGAT+AGG	0.510597	3_4:+2485083	None:intergenic
AGGAGGATGCTATTGTCTTG+AGG	0.572309	3_4:-2484292	Msa0485030:CDS
AGTAACAATGTCGTCAAAGA+AGG	0.537395	3_4:-2485318	Msa0485030:CDS
ATAAAGAAACAAACCTTCCA+TGG	0.546600	3_4:+2485032	None:intergenic
ATAGGTATGGTGAACGAAGA+GGG	0.505881	3_4:+2485101	None:intergenic
CAATTAGAGACATATTAGAT+TGG	0.477630	3_4:-2485277	Msa0485030:CDS
CACACAATGTGCCAATATTC+GGG	0.341666	3_4:+2485228	None:intergenic
CACCATACCTATCATAAACG+TGG	0.650368	3_4:-2485090	Msa0485030:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAAAGAAACAAACCTTCCA+TGG	+	chr3_4:2484580-2484599	None:intergenic	30.0%
TCCATACATAACCAGTTAAA+AGG	+	chr3_4:2484671-2484690	None:intergenic	30.0%
AGAAAACAGAAAATCACCAT+GGG	+	chr3_4:2484805-2484824	None:intergenic	30.0%
ATGTGTAATTTGATTGAAGG+TGG	-	chr3_4:2485183-2485202	Msa0485030:CDS	30.0%
TGTGTAATTTGATTGAAGGT+GGG	-	chr3_4:2485184-2485203	Msa0485030:CDS	30.0%
ATAAAGAAACAAACCTTCCA+TGG	+	chr3_4:2484580-2484599	None:intergenic	30.0%
TCCATACATAACCAGTTAAA+AGG	+	chr3_4:2484671-2484690	None:intergenic	30.0%
AGAAAACAGAAAATCACCAT+GGG	+	chr3_4:2484805-2484824	None:intergenic	30.0%
ATGTGTAATTTGATTGAAGG+TGG	-	chr3_4:2485183-2485202	Msa0485030:CDS	30.0%
TGTGTAATTTGATTGAAGGT+GGG	-	chr3_4:2485184-2485203	Msa0485030:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	2484259	2485372	2484259	ID=Msa0485030;Name=Msa0485030
chr3_4	mRNA	2484259	2485372	2484259	ID=Msa0485030-mRNA-1;Parent=Msa0485030;Name=Msa0485030-mRNA-1;_AED=0.13;_eAED=0.16;_QI=0\|0\|0\|1\|1\|1\|2\|0\|165
chr3_4	exon	2485046	2485372	2485046	ID=Msa0485030-mRNA-1:exon:861;Parent=Msa0485030-mRNA-1
chr3_4	exon	2484259	2484429	2484259	ID=Msa0485030-mRNA-1:exon:860;Parent=Msa0485030-mRNA-1
chr3_4	CDS	2485046	2485372	2485046	ID=Msa0485030-mRNA-1:cds;Parent=Msa0485030-mRNA-1
chr3_4	CDS	2484259	2484429	2484259	ID=Msa0485030-mRNA-1:cds;Parent=Msa0485030-mRNA-1

Gene Sequence

>Msa0485030

ATGTTTAGAACCCTAACCATGAAACAGGTACAAGTAACAATGTCGTCAAAGAAGGTGTGCATAAGAGACGCAACAATTAGAGACATATTAGATTGGAACAGTAACAACAATCTCGTTACTCGCCCGAATATTGGCACATTGTGTGAAAAGCTTCTTCACGTCGCGGACGATTGTAGCGGCTGTATTGTTGCTTATGTCCTCTCTGAAGGTGAAGAGGTAGGGAATGGCCACTTTAGTATTGCATTGCTTCCCTCTTCGTTCACCATACCTATCATAAACGTGGTATCGCTACTGGTCTTATCACCGCCGCCAAAAACACCATGGAAGGTGGGTGCTAAAGGTGTCTTAGTGCACGTCCGGAAGAGCAGCTCTGCAGCTCATGGTTTGTTTGAGAAGATGGGTTACACACTTCTCGAGGTGAAGGCCAAGTATTTTGATGATGAGGAGGATGCTATTGTCTTGAGGAAGATACTCAAGGGGAAGCATGTTGCCACCTAA

Protein sequence

>Msa0485030

MFRTLTMKQVQVTMSSKKVCIRDATIRDILDWNSNNNLVTRPNIGTLCEKLLHVADDCSGCIVAYVLSEGEEVGNGHFSIALLPSSFTIPIINVVSLLVLSPPPKTPWKVGAKGVLVHVRKSSSAAHGLFEKMGYTLLEVKAKYFDDEEDAIVLRKILKGKHVAT*