Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234870 | XP_013444467.1 | 98.812 | 505 | 6 | 0 | 1 | 505 | 1 | 505 | 0.0 | 1032 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234870 | sp|Q28EW0|TM87A_XENTR | 35.125 | 279 | 168 | 5 | 191 | 461 | 197 | 470 | 9.78e-47 | 173 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234870 | A0A072TM56 | 98.812 | 505 | 6 | 0 | 1 | 505 | 1 | 505 | 0.0 | 1032 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032980 | Msa1234870 | 0.801547 | 8.552027e-49 | -8.615850e-47 |
| Msa0606100 | Msa1234870 | 0.839639 | 1.404875e-57 | -8.615850e-47 |
| Msa0607800 | Msa1234870 | 0.808682 | 2.747104e-50 | -8.615850e-47 |
| Msa0615630 | Msa1234870 | 0.835187 | 1.942062e-56 | -8.615850e-47 |
| Msa0621710 | Msa1234870 | 0.811976 | 5.347992e-51 | -8.615850e-47 |
| Msa0647050 | Msa1234870 | 0.823041 | 1.714473e-53 | -8.615850e-47 |
| Msa0648040 | Msa1234870 | 0.805949 | 1.042441e-49 | -8.615850e-47 |
| Msa0654740 | Msa1234870 | 0.813696 | 2.245741e-51 | -8.615850e-47 |
| Msa0668900 | Msa1234870 | 0.815446 | 9.208184e-52 | -8.615850e-47 |
| Msa0687090 | Msa1234870 | 0.823080 | 1.679085e-53 | -8.615850e-47 |
| Msa0690740 | Msa1234870 | 0.805559 | 1.259154e-49 | -8.615850e-47 |
| Msa0698730 | Msa1234870 | 0.827482 | 1.526967e-54 | -8.615850e-47 |
| Msa0703600 | Msa1234870 | 0.807508 | 4.883489e-50 | -8.615850e-47 |
| Msa0709200 | Msa1234870 | 0.808001 | 3.837036e-50 | -8.615850e-47 |
| Msa0713960 | Msa1234870 | 0.819659 | 1.034107e-52 | -8.615850e-47 |
| Msa0714790 | Msa1234870 | 0.803841 | 2.876039e-49 | -8.615850e-47 |
| Msa0728780 | Msa1234870 | 0.823063 | 1.694814e-53 | -8.615850e-47 |
| Msa0743440 | Msa1234870 | 0.815482 | 9.040353e-52 | -8.615850e-47 |
| Msa0745720 | Msa1234870 | 0.806034 | 1.000813e-49 | -8.615850e-47 |
| Msa0747740 | Msa1234870 | 0.820985 | 5.133891e-53 | -8.615850e-47 |
| Msa0756820 | Msa1234870 | 0.803011 | 4.273546e-49 | -8.615850e-47 |
| Msa0769730 | Msa1234870 | 0.802337 | 5.885253e-49 | -8.615850e-47 |
| Msa0773630 | Msa1234870 | 0.825749 | 3.956467e-54 | -8.615850e-47 |
| Msa0778550 | Msa1234870 | 0.827401 | 1.597052e-54 | -8.615850e-47 |
| Msa0811020 | Msa1234870 | 0.811180 | 7.966123e-51 | -8.615850e-47 |
| Msa0835350 | Msa1234870 | 0.838992 | 2.067451e-57 | -8.615850e-47 |
| Msa0121330 | Msa1234870 | 0.801748 | 7.779024e-49 | -8.615850e-47 |
| Msa0159590 | Msa1234870 | 0.827164 | 1.819696e-54 | -8.615850e-47 |
| Msa0166170 | Msa1234870 | 0.817717 | 2.852767e-52 | -8.615850e-47 |
| Msa0200050 | Msa1234870 | 0.800685 | 1.283342e-48 | -8.615850e-47 |
| Msa0213610 | Msa1234870 | 0.808625 | 2.824510e-50 | -8.615850e-47 |
| Msa1234870 | Msa1240770 | 0.826660 | 2.401885e-54 | -8.615850e-47 |
| Msa1234870 | Msa1254540 | 0.808413 | 3.135596e-50 | -8.615850e-47 |
| Msa1234870 | Msa1261050 | 0.801067 | 1.072227e-48 | -8.615850e-47 |
| Msa1234870 | Msa1263740 | 0.828518 | 8.600962e-55 | -8.615850e-47 |
| Msa1234870 | Msa1263780 | 0.826176 | 3.132296e-54 | -8.615850e-47 |
| Msa1234870 | Msa1268630 | 0.848778 | 4.933136e-60 | -8.615850e-47 |
| Msa1234870 | Msa1279150 | 0.842389 | 2.664400e-58 | -8.615850e-47 |
| Msa1234870 | Msa1294790 | 0.800760 | 1.238748e-48 | -8.615850e-47 |
| Msa1234870 | Msa1300460 | 0.802929 | 4.442432e-49 | -8.615850e-47 |
| Msa1234870 | Msa1306310 | 0.804180 | 2.444821e-49 | -8.615850e-47 |
| Msa1234870 | Msa1314980 | 0.942064 | 1.391399e-101 | -8.615850e-47 |
| Msa1234870 | Msa1315130 | 0.821118 | 4.785242e-53 | -8.615850e-47 |
| Msa1234870 | Msa1315160 | 0.811710 | 6.110088e-51 | -8.615850e-47 |
| Msa1234870 | Msa1339170 | 0.831874 | 1.303144e-55 | -8.615850e-47 |
| Msa1234870 | Msa1362130 | 0.804751 | 1.858733e-49 | -8.615850e-47 |
| Msa1234870 | Msa1393560 | 0.808244 | 3.406034e-50 | -8.615850e-47 |
| Msa1234870 | Msa1400010 | 0.849375 | 3.367861e-60 | -8.615850e-47 |
| Msa1234870 | Msa1400710 | 0.801807 | 7.564697e-49 | -8.615850e-47 |
| Msa1234870 | Msa1426320 | 0.802433 | 5.622339e-49 | -8.615850e-47 |
| Msa1234870 | Msa1445120 | 0.821253 | 4.455460e-53 | -8.615850e-47 |
| Msa1234870 | Msa1450190 | 0.803481 | 3.415658e-49 | -8.615850e-47 |
| Msa0368860 | Msa1234870 | 0.806684 | 7.297860e-50 | -8.615850e-47 |
| Msa0400950 | Msa1234870 | 0.807432 | 5.070546e-50 | -8.615850e-47 |
| Msa0413170 | Msa1234870 | 0.807729 | 4.385322e-50 | -8.615850e-47 |
| Msa0433150 | Msa1234870 | 0.804233 | 2.382985e-49 | -8.615850e-47 |
| Msa1003740 | Msa1234870 | 0.833262 | 5.900704e-56 | -8.615850e-47 |
| Msa1003800 | Msa1234870 | 0.818223 | 2.193157e-52 | -8.615850e-47 |
| Msa1003930 | Msa1234870 | 0.834434 | 3.003626e-56 | -8.615850e-47 |
| Msa1042160 | Msa1234870 | 0.806416 | 8.313095e-50 | -8.615850e-47 |
| Msa1042190 | Msa1234870 | 0.810931 | 9.020016e-51 | -8.615850e-47 |
| Msa1078880 | Msa1234870 | 0.846970 | 1.553833e-59 | -8.615850e-47 |
| Msa1078970 | Msa1234870 | 0.835322 | 1.794975e-56 | -8.615850e-47 |
| Msa1080000 | Msa1234870 | 0.806365 | 8.520688e-50 | -8.615850e-47 |
| Msa0293040 | Msa1234870 | 0.808321 | 3.279703e-50 | -8.615850e-47 |
| Msa0298580 | Msa1234870 | 0.804370 | 2.231610e-49 | -8.615850e-47 |
| Msa0301820 | Msa1234870 | 0.804458 | 2.139552e-49 | -8.615850e-47 |
| Msa0324830 | Msa1234870 | 0.827593 | 1.435958e-54 | -8.615850e-47 |
| Msa0343010 | Msa1234870 | 0.808084 | 3.685230e-50 | -8.615850e-47 |
| Msa1123200 | Msa1234870 | 0.820525 | 6.551303e-53 | -8.615850e-47 |
| Msa1123210 | Msa1234870 | 0.815803 | 7.665721e-52 | -8.615850e-47 |
| Msa1127280 | Msa1234870 | 0.834568 | 2.780424e-56 | -8.615850e-47 |
| Msa1127470 | Msa1234870 | 0.804196 | 2.425976e-49 | -8.615850e-47 |
| Msa1132530 | Msa1234870 | 0.815407 | 9.391836e-52 | -8.615850e-47 |
| Msa1165480 | Msa1234870 | 0.830483 | 2.862943e-55 | -8.615850e-47 |
| Msa1167470 | Msa1234870 | 0.816852 | 4.465045e-52 | -8.615850e-47 |
| Msa1169190 | Msa1234870 | 0.847891 | 8.677572e-60 | -8.615850e-47 |
| Msa1174670 | Msa1234870 | 0.956054 | 7.267638e-114 | -8.615850e-47 |
| Msa1186520 | Msa1234870 | 0.839876 | 1.218597e-57 | -8.615850e-47 |
| Msa1213830 | Msa1234870 | 0.813158 | 2.949045e-51 | -8.615850e-47 |
| Msa1214350 | Msa1234870 | 0.818508 | 1.889978e-52 | -8.615850e-47 |
| Msa1215980 | Msa1234870 | 0.800667 | 1.294612e-48 | -8.615850e-47 |
| Msa0483910 | Msa1234870 | 0.816738 | 4.737856e-52 | -8.615850e-47 |
| Msa0561560 | Msa1234870 | 0.828220 | 1.014574e-54 | -8.615850e-47 |
| Msa0590200 | Msa1234870 | 0.803319 | 3.690006e-49 | -8.615850e-47 |
| Msa0863620 | Msa1234870 | 0.818368 | 2.032824e-52 | -8.615850e-47 |
| Msa0867110 | Msa1234870 | 0.805481 | 1.307634e-49 | -8.615850e-47 |
| Msa0931590 | Msa1234870 | 0.815213 | 1.037094e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234870 | MtrunA17_Chr8g0344451 | 98.812 | 505 | 6 | 0 | 1 | 505 | 1 | 505 | 0.0 | 1032 |
| Msa1234870 | MtrunA17_Chr2g0278311 | 57.895 | 456 | 187 | 4 | 20 | 472 | 23 | 476 | 0.0 | 552 |
| Msa1234870 | MtrunA17_Chr5g0428321 | 49.237 | 524 | 238 | 8 | 7 | 505 | 21 | 541 | 4.65e-176 | 506 |
| Msa1234870 | MtrunA17_Chr8g0334581 | 44.024 | 502 | 229 | 8 | 19 | 505 | 27 | 491 | 4.31e-137 | 405 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234870 | AT1G72480.1 | 70.325 | 492 | 141 | 2 | 19 | 505 | 18 | 509 | 0.0 | 724 |
| Msa1234870 | AT2G01070.1 | 52.823 | 496 | 213 | 5 | 14 | 505 | 18 | 496 | 0.0 | 532 |
| Msa1234870 | AT2G01070.2 | 55.656 | 442 | 181 | 3 | 14 | 451 | 18 | 448 | 7.40e-180 | 513 |
| Msa1234870 | AT1G61670.1 | 47.843 | 510 | 243 | 5 | 9 | 505 | 14 | 513 | 6.61e-162 | 469 |
| Msa1234870 | AT1G61670.2 | 47.843 | 510 | 243 | 5 | 9 | 505 | 14 | 513 | 6.61e-162 | 469 |
| Msa1234870 | AT1G10980.1 | 38.925 | 465 | 264 | 9 | 6 | 456 | 10 | 468 | 1.24e-104 | 323 |
Find 136 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTCAATATGTTAGATTT+TGG | 0.195422 | 8_2:-12618425 | Msa1234870:CDS |
| CTTAAGGATTTGGTTGTAGA+AGG | 0.250919 | 8_2:-12618558 | Msa1234870:CDS |
| TAGACGTGTTCTTCATTCTT+TGG | 0.274888 | 8_2:-12618038 | Msa1234870:CDS |
| TGATCCAAGGCTTAAGGATT+TGG | 0.284489 | 8_2:-12618568 | Msa1234870:CDS |
| CTTGGATCATCCCAGCCTTT+TGG | 0.296514 | 8_2:-12617392 | Msa1234870:CDS |
| ATGTGTTGCTTGGGATCTTT+TGG | 0.297305 | 8_2:-12618449 | Msa1234870:CDS |
| ACATCCTTTGGTAAAATAGA+TGG | 0.314272 | 8_2:+12616855 | None:intergenic |
| TAGAAGGATGATGATAAAAT+TGG | 0.315716 | 8_2:-12617760 | Msa1234870:CDS |
| CGGTGCAATAAGTGATCTTT+CGG | 0.324651 | 8_2:-12618100 | Msa1234870:CDS |
| TGTGTGTCATCTGTGTTGTC+TGG | 0.328516 | 8_2:-12617347 | Msa1234870:CDS |
| TTTCCATTGTTTCCTTGTAC+TGG | 0.329963 | 8_2:+12616813 | None:intergenic |
| CCTGCAGTTACTTGTAAGAT+TGG | 0.333455 | 8_2:-12616589 | Msa1234870:three_prime_UTR |
| TGTCTGTTGCACTGGTGATC+TGG | 0.344568 | 8_2:-12618766 | Msa1234870:CDS |
| CCGTCCTTCTACAGTGAATT+CGG | 0.349432 | 8_2:-12618706 | Msa1234870:CDS |
| ACAACAAAAGCGTTGCCTTT+GGG | 0.350791 | 8_2:+12619773 | None:intergenic |
| TGCAACTTTGAATAAGCTTC+AGG | 0.353143 | 8_2:-12617998 | Msa1234870:intron |
| GACAACAAAAGCGTTGCCTT+TGG | 0.359766 | 8_2:+12619772 | None:intergenic |
| GATTCCTGTTTCGCTAAATT+CGG | 0.371232 | 8_2:+12618317 | None:intergenic |
| AGAGAAAGAGGTTTCATTGA+GGG | 0.381199 | 8_2:+12619718 | None:intergenic |
| AGGAATTGAAGGAGAGAAAG+AGG | 0.392808 | 8_2:+12619706 | None:intergenic |
| ACTGTATGGGCAGTTACCTT+TGG | 0.396776 | 8_2:-12618279 | Msa1234870:CDS |
| TCCTTTGCATATGTGTTGCT+TGG | 0.397047 | 8_2:-12618459 | Msa1234870:CDS |
| TCACTGTGATCCAAGGCTTA+AGG | 0.398022 | 8_2:-12618574 | Msa1234870:CDS |
| GGTGCAATAAGTGATCTTTC+GGG | 0.400446 | 8_2:-12618099 | Msa1234870:CDS |
| GAAACAGGAATCAGGCCAAC+TGG | 0.406851 | 8_2:-12618306 | Msa1234870:CDS |
| CAATTCCTGACTCTTTCATA+AGG | 0.416600 | 8_2:-12619691 | Msa1234870:intron |
| GAGAGAGAAGGAGTGGGGTG+TGG | 0.419555 | 8_2:+12619893 | None:intergenic |
| GGCCAACTGGGACAACTGTA+TGG | 0.419983 | 8_2:-12618293 | Msa1234870:CDS |
| CCTTTGCATATGTGTTGCTT+GGG | 0.421476 | 8_2:-12618458 | Msa1234870:CDS |
| ACAATTGGTGGTTCGGCCTA+TGG | 0.426657 | 8_2:-12618801 | Msa1234870:CDS |
| GACAGAACTTGCCAAAAGGC+TGG | 0.431101 | 8_2:+12617381 | None:intergenic |
| TTGATAATTCCTTGTTTCTA+CGG | 0.431625 | 8_2:+12618877 | None:intergenic |
| ATGCAATGTAACAGGCTAGA+AGG | 0.432134 | 8_2:-12617776 | Msa1234870:intron |
| CATATGCAAAGGACATGAAC+TGG | 0.433132 | 8_2:+12618469 | None:intergenic |
| TAGGAAGTTCACCAATGCTT+TGG | 0.435399 | 8_2:-12617730 | Msa1234870:CDS |
| GTGGAAGATAGAGAGACAAT+TGG | 0.436551 | 8_2:-12618816 | Msa1234870:CDS |
| CAGTCCGAATTCACTGTAGA+AGG | 0.442631 | 8_2:+12618702 | None:intergenic |
| TATTACCTTATGAAAGAGTC+AGG | 0.444051 | 8_2:+12619686 | None:intergenic |
| GTGTGTCATCTGTGTTGTCT+GGG | 0.457926 | 8_2:-12617346 | Msa1234870:CDS |
| ACAACCAAATCCTTAAGCCT+TGG | 0.460415 | 8_2:+12618564 | None:intergenic |
| TCCGGCACACTCACATCCTT+TGG | 0.461944 | 8_2:+12616843 | None:intergenic |
| TCCATGATAAAAGTATAGTT+CGG | 0.465015 | 8_2:-12616564 | Msa1234870:three_prime_UTR |
| GAAATACAAATTATACATTC+CGG | 0.466974 | 8_2:+12618599 | None:intergenic |
| ATGAGCAATGGCAAAATGCT+TGG | 0.468783 | 8_2:-12617410 | Msa1234870:CDS |
| TTTCATAGGTGCCATTCTAC+CGG | 0.470578 | 8_2:+12618500 | None:intergenic |
| TAGAGAGACAATTGGTGGTT+CGG | 0.471497 | 8_2:-12618808 | Msa1234870:CDS |
| TGATAAAATTGGATATGTAT+AGG | 0.472188 | 8_2:-12617749 | Msa1234870:CDS |
| TTATAGAGCTAATGACATAA+TGG | 0.477902 | 8_2:+12616725 | None:intergenic |
| AATTTAGCGAAACAGGAATC+AGG | 0.482089 | 8_2:-12618314 | Msa1234870:CDS |
| AGTTCGGTTTACTAATACAA+AGG | 0.483640 | 8_2:-12616548 | Msa1234870:three_prime_UTR |
| CAAAGGGCTGTCTGTTGCAC+TGG | 0.484472 | 8_2:-12618774 | Msa1234870:CDS |
| GCATAATCACCTTTGATGTA+AGG | 0.485506 | 8_2:+12618175 | None:intergenic |
| AATGAAGAACACGTCTAATA+CGG | 0.487209 | 8_2:+12618044 | None:intergenic |
| CCTTGTACTGGTCTAGCATC+CGG | 0.487817 | 8_2:+12616825 | None:intergenic |
| GAGAGAAAGAGGTTTCATTG+AGG | 0.491311 | 8_2:+12619717 | None:intergenic |
| TTTGGTTGTAGAAGGGAAAA+CGG | 0.491750 | 8_2:-12618550 | Msa1234870:CDS |
| TTAAGGATTTGGTTGTAGAA+GGG | 0.493677 | 8_2:-12618557 | Msa1234870:CDS |
| ACATCAAAGGTGATTATGCT+TGG | 0.495017 | 8_2:-12618171 | Msa1234870:CDS |
| CAACAAAAGCGTTGCCTTTG+GGG | 0.506916 | 8_2:+12619774 | None:intergenic |
| AGGAGTGGGGTGTGGATCTG+TGG | 0.509103 | 8_2:+12619901 | None:intergenic |
| AAACTTGGTGTGTGCAATGA+AGG | 0.512261 | 8_2:-12618741 | Msa1234870:CDS |
| AACACGTCTAATACGGCAGC+AGG | 0.523540 | 8_2:+12618051 | None:intergenic |
| ACTGGTGATCTGGCAAAACT+TGG | 0.524523 | 8_2:-12618756 | Msa1234870:CDS |
| TCAAATACAACAGCTTGAAT+CGG | 0.526663 | 8_2:+12618840 | None:intergenic |
| AAATTCCTTCACTTCCTCCA+TGG | 0.529822 | 8_2:+12619750 | None:intergenic |
| TCAAGCTGTTGTATTTGAAG+TGG | 0.531264 | 8_2:-12618835 | Msa1234870:CDS |
| ATGAAAGAGTCAGGAATTGA+AGG | 0.531275 | 8_2:+12619695 | None:intergenic |
| TTAATCGTTTCAATGGGCTA+TGG | 0.532401 | 8_2:-12618222 | Msa1234870:CDS |
| GGTGTTGTGAGACCTACTCT+TGG | 0.533241 | 8_2:-12618201 | Msa1234870:CDS |
| TGGCTATCTACCCGGTAGAA+TGG | 0.533484 | 8_2:-12618511 | Msa1234870:CDS |
| GTTGTCCATGGAGGAAGTGA+AGG | 0.536293 | 8_2:-12619755 | Msa1234870:CDS |
| ACAGAACTTGCCAAAAGGCT+GGG | 0.536502 | 8_2:+12617382 | None:intergenic |
| CACAGCTACTGCCAAAGCAT+TGG | 0.539058 | 8_2:+12617719 | None:intergenic |
| AGTAGCTGTGGTTGTATCTG+TGG | 0.546402 | 8_2:-12617706 | Msa1234870:CDS |
| ATGGGAGCGAAGAGTTCGAT+AGG | 0.546538 | 8_2:-12616905 | Msa1234870:CDS |
| GTAAGACAGAACTTGCCAAA+AGG | 0.547149 | 8_2:+12617377 | None:intergenic |
| ATTTCATTCACTGTGATCCA+AGG | 0.552944 | 8_2:-12618581 | Msa1234870:CDS |
| CGTTCTCTTGATAGTTCCAA+AGG | 0.554745 | 8_2:+12618263 | None:intergenic |
| GTGATCTGAATAGATTTGAT+CGG | 0.555253 | 8_2:+12618627 | None:intergenic |
| TCTTGGAGGCCTTACATCAA+AGG | 0.555675 | 8_2:-12618184 | Msa1234870:CDS |
| CAATGCTTTGGCAGTAGCTG+TGG | 0.556217 | 8_2:-12617718 | Msa1234870:CDS |
| AACACTCGGCATGTTTGAGA+TGG | 0.559304 | 8_2:-12618361 | Msa1234870:CDS |
| GTTCGGCCTATGGAGGTCAA+AGG | 0.561879 | 8_2:-12618791 | Msa1234870:CDS |
| TTCGGCCTATGGAGGTCAAA+GGG | 0.562746 | 8_2:-12618790 | Msa1234870:CDS |
| AGTGTTATGCAGTTCTGCAA+TGG | 0.563040 | 8_2:+12618390 | None:intergenic |
| CTGTGGTTGTATCTGTGGGA+TGG | 0.563356 | 8_2:-12617701 | Msa1234870:CDS |
| TCAAAGGTGATTATGCTTGG+TGG | 0.563894 | 8_2:-12618168 | Msa1234870:CDS |
| TTGTAGAAGGGAAAACGGTA+TGG | 0.564102 | 8_2:-12618545 | Msa1234870:CDS |
| GTAGCTGTGGTTGTATCTGT+GGG | 0.568371 | 8_2:-12617705 | Msa1234870:CDS |
| TTCATAGGTGCCATTCTACC+GGG | 0.571888 | 8_2:+12618501 | None:intergenic |
| TGCATCTGAAGTGCTTGAGT+TGG | 0.574697 | 8_2:-12618133 | Msa1234870:CDS |
| CTTTGGAACTATCAAGAGAA+CGG | 0.576048 | 8_2:-12618262 | Msa1234870:CDS |
| GATGTAAGGCCTCCAAGAGT+AGG | 0.579380 | 8_2:+12618189 | None:intergenic |
| GCCCATACAGTTGTCCCAGT+TGG | 0.582069 | 8_2:+12618291 | None:intergenic |
| ATGATATATACAATGAGCAA+TGG | 0.584957 | 8_2:-12617422 | Msa1234870:CDS |
| CCAATCTTACAAGTAACTGC+AGG | 0.585387 | 8_2:+12616589 | None:intergenic |
| ACGGTATGGAAGAATCCCTC+TGG | 0.586507 | 8_2:-12618531 | Msa1234870:CDS |
| GCCAACTGGGACAACTGTAT+GGG | 0.590383 | 8_2:-12618292 | Msa1234870:CDS |
| TGGTGTGTGCAATGAAGGAC+AGG | 0.592622 | 8_2:-12618736 | Msa1234870:CDS |
| GTTGTGAGACCTACTCTTGG+AGG | 0.595017 | 8_2:-12618198 | Msa1234870:CDS |
| CCGGATGCTAGACCAGTACA+AGG | 0.595061 | 8_2:-12616825 | Msa1234870:CDS |
| AGATATGCTTACCGTGACGA+TGG | 0.595374 | 8_2:-12616924 | Msa1234870:CDS |
| CTTCTACAGTGAATTCGGAC+TGG | 0.597379 | 8_2:-12618701 | Msa1234870:CDS |
| GATATGCTTACCGTGACGAT+GGG | 0.597669 | 8_2:-12616923 | Msa1234870:CDS |
| ACCAAAGGATGTGAGTGTGC+CGG | 0.598398 | 8_2:-12616844 | Msa1234870:CDS |
| AATAAGCTAGAATATAGCTA+TGG | 0.599904 | 8_2:-12616758 | Msa1234870:exon |
| AAACAGGAATCAGGCCAACT+GGG | 0.601977 | 8_2:-12618305 | Msa1234870:CDS |
| AGTCACATTCCGTAGAAACA+AGG | 0.604075 | 8_2:-12618886 | Msa1234870:CDS |
| AGAATTGTAAGAACTGTGAG+AGG | 0.606225 | 8_2:+12619860 | None:intergenic |
| ATTGGTGGTTCGGCCTATGG+AGG | 0.610044 | 8_2:-12618798 | Msa1234870:CDS |
| TGGGAGCGAAGAGTTCGATA+GGG | 0.610656 | 8_2:-12616904 | Msa1234870:CDS |
| CATGTATGCATGTATGCACA+TGG | 0.617426 | 8_2:+12616482 | None:intergenic |
| GAAGATAGAGAGACAATTGG+TGG | 0.619803 | 8_2:-12618813 | Msa1234870:CDS |
| AATTATCAAACTTTAGCTCG+TGG | 0.622921 | 8_2:-12618863 | Msa1234870:CDS |
| AGACCAGTACAAGGAAACAA+TGG | 0.626146 | 8_2:-12616816 | Msa1234870:CDS |
| AACGCGACGCCGAAAACTTG+AGG | 0.627067 | 8_2:+12618678 | None:intergenic |
| CCCAAGCAACACATATGCAA+AGG | 0.627872 | 8_2:+12618458 | None:intergenic |
| AATCCCTCTGGCTATCTACC+CGG | 0.632875 | 8_2:-12618519 | Msa1234870:CDS |
| AACAAAAGCGTTGCCTTTGG+GGG | 0.633130 | 8_2:+12619775 | None:intergenic |
| GAATTGTAAGAACTGTGAGA+GGG | 0.646971 | 8_2:+12619861 | None:intergenic |
| ACTCTTCGCTCCCATCGTCA+CGG | 0.648119 | 8_2:+12616913 | None:intergenic |
| AATTGTAAGAACTGTGAGAG+GGG | 0.650924 | 8_2:+12619862 | None:intergenic |
| CACCATCTCAAAATTCAACA+CGG | 0.653546 | 8_2:-12617323 | Msa1234870:intron |
| CTATCAAGAGAACGGTTGCG+AGG | 0.659792 | 8_2:-12618254 | Msa1234870:CDS |
| CCGAATTCACTGTAGAAGGA+CGG | 0.663014 | 8_2:+12618706 | None:intergenic |
| GACAGCCCTTTGACCTCCAT+AGG | 0.665364 | 8_2:+12618785 | None:intergenic |
| TGTGGGATGGATATGCTATG+AGG | 0.666058 | 8_2:-12617688 | Msa1234870:intron |
| TATGCATGTATGCACATGGA+TGG | 0.666101 | 8_2:+12616486 | None:intergenic |
| GTGCATACATGCATACATGT+GGG | 0.666481 | 8_2:-12616478 | Msa1234870:three_prime_UTR |
| TGCATACATGCATACATGTG+GGG | 0.670822 | 8_2:-12616477 | Msa1234870:three_prime_UTR |
| TGTGCATACATGCATACATG+TGG | 0.675610 | 8_2:-12616479 | Msa1234870:three_prime_UTR |
| CTTGAGTTGGTAGAACATGT+CGG | 0.689634 | 8_2:-12618120 | Msa1234870:CDS |
| ATAACACTAGTGATAACACT+CGG | 0.692289 | 8_2:-12618375 | Msa1234870:CDS |
| CTACCGGGTAGATAGCCAGA+GGG | 0.707493 | 8_2:+12618516 | None:intergenic |
| TCTACCGGGTAGATAGCCAG+AGG | 0.717930 | 8_2:+12618515 | None:intergenic |
| GCATACATGCATACATGTGG+GGG | 0.727243 | 8_2:-12616476 | Msa1234870:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATTGTCTATAAAAAAT+AGG | - | chr8_2:12619424-12619443 | Msa1234870:intron | 10.0% |
| !! | TAAATTGTCTATAAAAAATA+GGG | - | chr8_2:12619425-12619444 | Msa1234870:intron | 10.0% |
| !! | TATACTATGAACAAATTAAA+AGG | - | chr8_2:12618914-12618933 | Msa1234870:intron | 15.0% |
| !!! | TAAGCTATTTCTATAACAAA+AGG | - | chr8_2:12617298-12617317 | Msa1234870:intron | 20.0% |
| !!! | AAATTATGTTGATTGGATTT+TGG | - | chr8_2:12617534-12617553 | Msa1234870:intron | 20.0% |
| !! | GAAATACAAATTATACATTC+CGG | + | chr8_2:12617876-12617895 | None:intergenic | 20.0% |
| !!! | TCTTTCAATATGTTAGATTT+TGG | - | chr8_2:12618047-12618066 | Msa1234870:CDS | 20.0% |
| !!! | ATCATTTTAATCGTTTCAAT+GGG | - | chr8_2:12618244-12618263 | Msa1234870:CDS | 20.0% |
| !! | TGATAAAATTGGATATGTAT+AGG | - | chr8_2:12618723-12618742 | Msa1234870:CDS | 20.0% |
| !!! | AATAAGTTGAAAACAACTTA+TGG | + | chr8_2:12619282-12619301 | None:intergenic | 20.0% |
| !! | ATTAAGTGTCTATCATATAT+GGG | + | chr8_2:12619405-12619424 | None:intergenic | 20.0% |
| !! | AATTAAGTGTCTATCATATA+TGG | + | chr8_2:12619406-12619425 | None:intergenic | 20.0% |
| !! | TTTTAACAGTGAGGTTATAT+GGG | + | chr8_2:12616492-12616511 | None:intergenic | 25.0% |
| ! | TAATAATTCACATTCCTTTC+TGG | - | chr8_2:12616804-12616823 | Msa1234870:CDS | 25.0% |
| ! | AATAATTCACATTCCTTTCT+GGG | - | chr8_2:12616805-12616824 | Msa1234870:CDS | 25.0% |
| ! | CTGAATACTAAAATGTGAAA+AGG | + | chr8_2:12616858-12616877 | None:intergenic | 25.0% |
| !!! | AAATGATTTTTTGAACCTGT+CGG | - | chr8_2:12616950-12616969 | Msa1234870:intron | 25.0% |
| ! | TAAGCTGTTAAAATCAAACA+AGG | + | chr8_2:12617012-12617031 | None:intergenic | 25.0% |
| ! | GTTATGGAAATTATGTTGAT+TGG | - | chr8_2:12617527-12617546 | Msa1234870:intron | 25.0% |
| !!! | TTGATAATTCCTTGTTTCTA+CGG | + | chr8_2:12617598-12617617 | None:intergenic | 25.0% |
| !! | AACTGGAAGAAAATTTTCAT+AGG | + | chr8_2:12617989-12618008 | None:intergenic | 25.0% |
| !! | TCAATATGTTAGATTTTGGA+AGG | - | chr8_2:12618051-12618070 | Msa1234870:CDS | 25.0% |
| !!! | GATCATTTTAATCGTTTCAA+TGG | - | chr8_2:12618243-12618262 | Msa1234870:CDS | 25.0% |
| !! | TTGTACATAAAAGCATATCA+TGG | + | chr8_2:12618549-12618568 | None:intergenic | 25.0% |
| ! | TAGAAGGATGATGATAAAAT+TGG | - | chr8_2:12618712-12618731 | Msa1234870:CDS | 25.0% |
| ! | ATGATATATACAATGAGCAA+TGG | - | chr8_2:12619050-12619069 | Msa1234870:intron | 25.0% |
| ! | AAGCTATTCAAAATAGCTTA+TGG | + | chr8_2:12619306-12619325 | None:intergenic | 25.0% |
| ! | TCAAAACCAGAAATAAAGAA+CGG | + | chr8_2:12619527-12619546 | None:intergenic | 25.0% |
| !! | AAAACCATCTATTTTACCAA+AGG | - | chr8_2:12619613-12619632 | Msa1234870:intron | 25.0% |
| ! | AATAAGCTAGAATATAGCTA+TGG | - | chr8_2:12619714-12619733 | Msa1234870:CDS | 25.0% |
| ! | TTATAGAGCTAATGACATAA+TGG | + | chr8_2:12619750-12619769 | None:intergenic | 25.0% |
| !! | TCCATGATAAAAGTATAGTT+CGG | - | chr8_2:12619908-12619927 | Msa1234870:five_prime_UTR | 25.0% |
| !! | GTTTTAACAGTGAGGTTATA+TGG | + | chr8_2:12616493-12616512 | None:intergenic | 30.0% |
| !!! | TGTTTAGTGTTTTAACAGTG+AGG | + | chr8_2:12616501-12616520 | None:intergenic | 30.0% |
| TATTACCTTATGAAAGAGTC+AGG | + | chr8_2:12616789-12616808 | None:intergenic | 30.0% | |
| !! | GTTGTTTTCATAAGCTAACA+TGG | - | chr8_2:12617105-12617124 | Msa1234870:intron | 30.0% |
| AGCTCAAATAAGCCTATTTA+AGG | - | chr8_2:12617206-12617225 | Msa1234870:intron | 30.0% | |
| TAAGTAATTCTCATGCTAAG+TGG | - | chr8_2:12617268-12617287 | Msa1234870:intron | 30.0% | |
| TCAGTAGTTAAGCTCAAATA+TGG | - | chr8_2:12617471-12617490 | Msa1234870:intron | 30.0% | |
| TCAAATATGGCAATACAAAC+AGG | - | chr8_2:12617484-12617503 | Msa1234870:intron | 30.0% | |
| AACAAAGTAAGCGCTATTTA+GGG | + | chr8_2:12617510-12617529 | None:intergenic | 30.0% | |
| TAACAAAGTAAGCGCTATTT+AGG | + | chr8_2:12617511-12617530 | None:intergenic | 30.0% | |
| AAATAGCGCTTACTTTGTTA+TGG | - | chr8_2:12617511-12617530 | Msa1234870:intron | 30.0% | |
| ! | AATTATCAAACTTTAGCTCG+TGG | - | chr8_2:12617609-12617628 | Msa1234870:intron | 30.0% |
| TCAAATACAACAGCTTGAAT+CGG | + | chr8_2:12617635-12617654 | None:intergenic | 30.0% | |
| GTGATCTGAATAGATTTGAT+CGG | + | chr8_2:12617848-12617867 | None:intergenic | 30.0% | |
| TCTATTCAGATCACAAAAAC+CGG | - | chr8_2:12617854-12617873 | Msa1234870:intron | 30.0% | |
| ! | TTAAGGATTTGGTTGTAGAA+GGG | - | chr8_2:12617915-12617934 | Msa1234870:intron | 30.0% |
| ATAACACTAGTGATAACACT+CGG | - | chr8_2:12618097-12618116 | Msa1234870:CDS | 30.0% | |
| AATGAAGAACACGTCTAATA+CGG | + | chr8_2:12618431-12618450 | None:intergenic | 30.0% | |
| AATTACGTTCTATGCTAACT+AGG | - | chr8_2:12618838-12618857 | Msa1234870:CDS | 30.0% | |
| AACATTTCTTGATCTAGTCT+AGG | + | chr8_2:12618948-12618967 | None:intergenic | 30.0% | |
| ATATGAACATAGAGCATAGA+TGG | + | chr8_2:12619478-12619497 | None:intergenic | 30.0% | |
| ! | TTAATGCCGTTCTTTATTTC+TGG | - | chr8_2:12619518-12619537 | Msa1234870:intron | 30.0% |
| ACATCCTTTGGTAAAATAGA+TGG | + | chr8_2:12619620-12619639 | None:intergenic | 30.0% | |
| ! | ACCGAACTATACTTTTATCA+TGG | + | chr8_2:12619912-12619931 | None:intergenic | 30.0% |
| AGTTCGGTTTACTAATACAA+AGG | - | chr8_2:12619924-12619943 | Msa1234870:five_prime_UTR | 30.0% | |
| !! | ATTTTAGAGAGAGAAGGAGT+GGG | + | chr8_2:12616588-12616607 | None:intergenic | 35.0% |
| AATTGTAAGAACTGTGAGAG+GGG | + | chr8_2:12616613-12616632 | None:intergenic | 35.0% | |
| GAATTGTAAGAACTGTGAGA+GGG | + | chr8_2:12616614-12616633 | None:intergenic | 35.0% | |
| AGAATTGTAAGAACTGTGAG+AGG | + | chr8_2:12616615-12616634 | None:intergenic | 35.0% | |
| !! | AAGTTTCGCTTTTGTAGTCA+TGG | + | chr8_2:12616674-12616693 | None:intergenic | 35.0% |
| AGAGAAAGAGGTTTCATTGA+GGG | + | chr8_2:12616757-12616776 | None:intergenic | 35.0% | |
| ATGAAAGAGTCAGGAATTGA+AGG | + | chr8_2:12616780-12616799 | None:intergenic | 35.0% | |
| CAATTCCTGACTCTTTCATA+AGG | - | chr8_2:12616781-12616800 | Msa1234870:CDS | 35.0% | |
| AAAAGAGAAGAAACCCAGAA+AGG | + | chr8_2:12616821-12616840 | None:intergenic | 35.0% | |
| TGGTACAAAAAATGATAGCC+TGG | - | chr8_2:12616973-12616992 | Msa1234870:intron | 35.0% | |
| TAATCTCTTCCAAACAGTCT+TGG | - | chr8_2:12617162-12617181 | Msa1234870:intron | 35.0% | |
| ATCCAAACAGAGCCTTAAAT+AGG | + | chr8_2:12617221-12617240 | None:intergenic | 35.0% | |
| CTTATTTCCATAAGCTCTCA+TGG | + | chr8_2:12617379-12617398 | None:intergenic | 35.0% | |
| AAGCATTTGTGACACTGTTT+GGG | + | chr8_2:12617448-12617467 | None:intergenic | 35.0% | |
| TAAGCATTTGTGACACTGTT+TGG | + | chr8_2:12617449-12617468 | None:intergenic | 35.0% | |
| GAATGTGACTTTATCAAACC+TGG | + | chr8_2:12617576-12617595 | None:intergenic | 35.0% | |
| TCAAGCTGTTGTATTTGAAG+TGG | - | chr8_2:12617637-12617656 | Msa1234870:intron | 35.0% | |
| ATTTCATTCACTGTGATCCA+AGG | - | chr8_2:12617891-12617910 | Msa1234870:intron | 35.0% | |
| ! | CTTAAGGATTTGGTTGTAGA+AGG | - | chr8_2:12617914-12617933 | Msa1234870:intron | 35.0% |
| TTTGGTTGTAGAAGGGAAAA+CGG | - | chr8_2:12617922-12617941 | Msa1234870:intron | 35.0% | |
| GATTCCTGTTTCGCTAAATT+CGG | + | chr8_2:12618158-12618177 | None:intergenic | 35.0% | |
| AATTTAGCGAAACAGGAATC+AGG | - | chr8_2:12618158-12618177 | Msa1234870:CDS | 35.0% | |
| !! | CTTTGGAACTATCAAGAGAA+CGG | - | chr8_2:12618210-12618229 | Msa1234870:CDS | 35.0% |
| !! | TTAATCGTTTCAATGGGCTA+TGG | - | chr8_2:12618250-12618269 | Msa1234870:CDS | 35.0% |
| GCATAATCACCTTTGATGTA+AGG | + | chr8_2:12618300-12618319 | None:intergenic | 35.0% | |
| ACATCAAAGGTGATTATGCT+TGG | - | chr8_2:12618301-12618320 | Msa1234870:CDS | 35.0% | |
| CACTTCAGATGCAACAAAAA+AGG | + | chr8_2:12618332-12618351 | None:intergenic | 35.0% | |
| ! | GGGAAAAGCAAAACTTTTCT+TGG | - | chr8_2:12618393-12618412 | Msa1234870:CDS | 35.0% |
| TAGACGTGTTCTTCATTCTT+TGG | - | chr8_2:12618434-12618453 | Msa1234870:CDS | 35.0% | |
| TGCAACTTTGAATAAGCTTC+AGG | - | chr8_2:12618474-12618493 | Msa1234870:CDS | 35.0% | |
| GAATGACTCAATTCACTTTG+TGG | - | chr8_2:12618625-12618644 | Msa1234870:CDS | 35.0% | |
| GATAGTTGAATCAAGCTCAT+TGG | - | chr8_2:12618870-12618889 | Msa1234870:CDS | 35.0% | |
| AACTTATCGAAAGTCTACTG+CGG | + | chr8_2:12618974-12618993 | None:intergenic | 35.0% | |
| CAGCTGAAAGAAAATCAGAA+AGG | + | chr8_2:12619017-12619036 | None:intergenic | 35.0% | |
| CACCATCTCAAAATTCAACA+CGG | - | chr8_2:12619149-12619168 | Msa1234870:intron | 35.0% | |
| !! | TACCGTGTTGAATTTTGAGA+TGG | + | chr8_2:12619154-12619173 | None:intergenic | 35.0% |
| TAGATAACAAAAGGACTTGG+AGG | + | chr8_2:12619186-12619205 | None:intergenic | 35.0% | |
| !! | TCCAAGTCCTTTTGTTATCT+AGG | - | chr8_2:12619185-12619204 | Msa1234870:intron | 35.0% |
| ACCTAGATAACAAAAGGACT+TGG | + | chr8_2:12619189-12619208 | None:intergenic | 35.0% | |
| ACTTATTTGAGCTTATCCAC+TGG | - | chr8_2:12619222-12619241 | Msa1234870:intron | 35.0% | |
| TTAACAGTGAGATACAAGTG+AGG | + | chr8_2:12619502-12619521 | None:intergenic | 35.0% | |
| TTTCCATTGTTTCCTTGTAC+TGG | + | chr8_2:12619662-12619681 | None:intergenic | 35.0% | |
| !! | TTTTAGAGAGAGAAGGAGTG+GGG | + | chr8_2:12616587-12616606 | None:intergenic | 40.0% |
| !! | CATTTTAGAGAGAGAAGGAG+TGG | + | chr8_2:12616589-12616608 | None:intergenic | 40.0% |
| !! | TTCGCTTTTGTAGTCATGGA+CGG | + | chr8_2:12616670-12616689 | None:intergenic | 40.0% |
| !! | ACAACAAAAGCGTTGCCTTT+GGG | + | chr8_2:12616702-12616721 | None:intergenic | 40.0% |
| AAATTCCTTCACTTCCTCCA+TGG | + | chr8_2:12616725-12616744 | None:intergenic | 40.0% | |
| GAGAGAAAGAGGTTTCATTG+AGG | + | chr8_2:12616758-12616777 | None:intergenic | 40.0% | |
| AGGAATTGAAGGAGAGAAAG+AGG | + | chr8_2:12616769-12616788 | None:intergenic | 40.0% | |
| !!! | TGATTTTTTGAACCTGTCGG+TGG | - | chr8_2:12616953-12616972 | Msa1234870:intron | 40.0% |
| !!! | TCATTTTTTGTACCACCGAC+AGG | + | chr8_2:12616968-12616987 | None:intergenic | 40.0% |
| CAAGGTCTAGAAACTAAACC+AGG | + | chr8_2:12616994-12617013 | None:intergenic | 40.0% | |
| TACACACTTCCAAGACTGTT+TGG | + | chr8_2:12617174-12617193 | None:intergenic | 40.0% | |
| ! | AGCCTATTTAAGGCTCTGTT+TGG | - | chr8_2:12617216-12617235 | Msa1234870:intron | 40.0% |
| ! | GGTGTTGTAATGTGAAAACC+AGG | - | chr8_2:12617555-12617574 | Msa1234870:intron | 40.0% |
| AGTCACATTCCGTAGAAACA+AGG | - | chr8_2:12617586-12617605 | Msa1234870:intron | 40.0% | |
| GTGGAAGATAGAGAGACAAT+TGG | - | chr8_2:12617656-12617675 | Msa1234870:intron | 40.0% | |
| GAAGATAGAGAGACAATTGG+TGG | - | chr8_2:12617659-12617678 | Msa1234870:intron | 40.0% | |
| ! | TAGAGAGACAATTGGTGGTT+CGG | - | chr8_2:12617664-12617683 | Msa1234870:intron | 40.0% |
| !! | AAACTTGGTGTGTGCAATGA+AGG | - | chr8_2:12617731-12617750 | Msa1234870:CDS | 40.0% |
| TGATCCAAGGCTTAAGGATT+TGG | - | chr8_2:12617904-12617923 | Msa1234870:intron | 40.0% | |
| ACAACCAAATCCTTAAGCCT+TGG | + | chr8_2:12617911-12617930 | None:intergenic | 40.0% | |
| TTGTAGAAGGGAAAACGGTA+TGG | - | chr8_2:12617927-12617946 | Msa1234870:intron | 40.0% | |
| !! | TTTCATAGGTGCCATTCTAC+CGG | + | chr8_2:12617975-12617994 | None:intergenic | 40.0% |
| CATATGCAAAGGACATGAAC+TGG | + | chr8_2:12618006-12618025 | None:intergenic | 40.0% | |
| ! | TCCTTTGCATATGTGTTGCT+TGG | - | chr8_2:12618013-12618032 | Msa1234870:CDS | 40.0% |
| !! | CCTTTGCATATGTGTTGCTT+GGG | - | chr8_2:12618014-12618033 | Msa1234870:CDS | 40.0% |
| !!! | ATGTGTTGCTTGGGATCTTT+TGG | - | chr8_2:12618023-12618042 | Msa1234870:CDS | 40.0% |
| AGTGTTATGCAGTTCTGCAA+TGG | + | chr8_2:12618085-12618104 | None:intergenic | 40.0% | |
| !! | GCATGTTTGAGATGGCTTTT+TGG | - | chr8_2:12618119-12618138 | Msa1234870:CDS | 40.0% |
| TATGCCGAATTTAGCGAAAC+AGG | - | chr8_2:12618151-12618170 | Msa1234870:CDS | 40.0% | |
| ! | CGTTCTCTTGATAGTTCCAA+AGG | + | chr8_2:12618212-12618231 | None:intergenic | 40.0% |
| TCAAAGGTGATTATGCTTGG+TGG | - | chr8_2:12618304-12618323 | Msa1234870:CDS | 40.0% | |
| !! | CTTGAGTTGGTAGAACATGT+CGG | - | chr8_2:12618352-12618371 | Msa1234870:CDS | 40.0% |
| CGGTGCAATAAGTGATCTTT+CGG | - | chr8_2:12618372-12618391 | Msa1234870:CDS | 40.0% | |
| GGTGCAATAAGTGATCTTTC+GGG | - | chr8_2:12618373-12618392 | Msa1234870:CDS | 40.0% | |
| ! | GAGTCATTCATCGTTTTACG+TGG | + | chr8_2:12618614-12618633 | None:intergenic | 40.0% |
| CTCTGCTTATGCAATGTAAC+AGG | - | chr8_2:12618688-12618707 | Msa1234870:CDS | 40.0% | |
| ATGCAATGTAACAGGCTAGA+AGG | - | chr8_2:12618696-12618715 | Msa1234870:CDS | 40.0% | |
| TAGGAAGTTCACCAATGCTT+TGG | - | chr8_2:12618742-12618761 | Msa1234870:CDS | 40.0% | |
| ATGAGCAATGGCAAAATGCT+TGG | - | chr8_2:12619062-12619081 | Msa1234870:intron | 40.0% | |
| GTAAGACAGAACTTGCCAAA+AGG | + | chr8_2:12619098-12619117 | None:intergenic | 40.0% | |
| !! | GTCCTTTTGTTATCTAGGTC+CGG | - | chr8_2:12619190-12619209 | Msa1234870:intron | 40.0% |
| AACCGGACCTAGATAACAAA+AGG | + | chr8_2:12619195-12619214 | None:intergenic | 40.0% | |
| ! | TTTGTTATCTAGGTCCGGTT+TGG | - | chr8_2:12619195-12619214 | Msa1234870:intron | 40.0% |
| TTGTTATCTAGGTCCGGTTT+GGG | - | chr8_2:12619196-12619215 | Msa1234870:intron | 40.0% | |
| TCAAATAAGTCGACCCAAAC+CGG | + | chr8_2:12619212-12619231 | None:intergenic | 40.0% | |
| CTCACAAATGTTTATGCCAG+TGG | + | chr8_2:12619241-12619260 | None:intergenic | 40.0% | |
| AGACCAGTACAAGGAAACAA+TGG | - | chr8_2:12619656-12619675 | Msa1234870:intron | 40.0% | |
| CCAATCTTACAAGTAACTGC+AGG | + | chr8_2:12619886-12619905 | None:intergenic | 40.0% | |
| CCTGCAGTTACTTGTAAGAT+TGG | - | chr8_2:12619883-12619902 | Msa1234870:exon | 40.0% | |
| TATGCATGTATGCACATGGA+TGG | + | chr8_2:12619989-12620008 | None:intergenic | 40.0% | |
| CATGTATGCATGTATGCACA+TGG | + | chr8_2:12619993-12620012 | None:intergenic | 40.0% | |
| TGTGCATACATGCATACATG+TGG | - | chr8_2:12619993-12620012 | Msa1234870:five_prime_UTR | 40.0% | |
| GTGCATACATGCATACATGT+GGG | - | chr8_2:12619994-12620013 | Msa1234870:five_prime_UTR | 40.0% | |
| TGCATACATGCATACATGTG+GGG | - | chr8_2:12619995-12620014 | Msa1234870:five_prime_UTR | 40.0% | |
| !! | GGGGACATTTTAGAGAGAGA+AGG | + | chr8_2:12616594-12616613 | None:intergenic | 45.0% |
| !! | AACAAAAGCGTTGCCTTTGG+GGG | + | chr8_2:12616700-12616719 | None:intergenic | 45.0% |
| !! | CAACAAAAGCGTTGCCTTTG+GGG | + | chr8_2:12616701-12616720 | None:intergenic | 45.0% |
| !! | GACAACAAAAGCGTTGCCTT+TGG | + | chr8_2:12616703-12616722 | None:intergenic | 45.0% |
| !! | AACGCTTTTGTTGTCCATGG+AGG | - | chr8_2:12616708-12616727 | Msa1234870:three_prime_UTR | 45.0% |
| AAGCTAGCCATGAGAGCTTA+TGG | - | chr8_2:12617369-12617388 | Msa1234870:CDS | 45.0% | |
| ACTGGTGATCTGGCAAAACT+TGG | - | chr8_2:12617716-12617735 | Msa1234870:CDS | 45.0% | |
| CCGAATTCACTGTAGAAGGA+CGG | + | chr8_2:12617769-12617788 | None:intergenic | 45.0% | |
| CCGTCCTTCTACAGTGAATT+CGG | - | chr8_2:12617766-12617785 | Msa1234870:intron | 45.0% | |
| CAGTCCGAATTCACTGTAGA+AGG | + | chr8_2:12617773-12617792 | None:intergenic | 45.0% | |
| CTTCTACAGTGAATTCGGAC+TGG | - | chr8_2:12617771-12617790 | Msa1234870:intron | 45.0% | |
| TCACTGTGATCCAAGGCTTA+AGG | - | chr8_2:12617898-12617917 | Msa1234870:intron | 45.0% | |
| !! | TTCATAGGTGCCATTCTACC+GGG | + | chr8_2:12617974-12617993 | None:intergenic | 45.0% |
| CCCAAGCAACACATATGCAA+AGG | + | chr8_2:12618017-12618036 | None:intergenic | 45.0% | |
| AACACTCGGCATGTTTGAGA+TGG | - | chr8_2:12618111-12618130 | Msa1234870:CDS | 45.0% | |
| AAACAGGAATCAGGCCAACT+GGG | - | chr8_2:12618167-12618186 | Msa1234870:CDS | 45.0% | |
| ACTGTATGGGCAGTTACCTT+TGG | - | chr8_2:12618193-12618212 | Msa1234870:CDS | 45.0% | |
| TCTTGGAGGCCTTACATCAA+AGG | - | chr8_2:12618288-12618307 | Msa1234870:CDS | 45.0% | |
| ! | TGCATCTGAAGTGCTTGAGT+TGG | - | chr8_2:12618339-12618358 | Msa1234870:CDS | 45.0% |
| GCTTCAGGTATTTATCCGCA+AGG | - | chr8_2:12618489-12618508 | Msa1234870:CDS | 45.0% | |
| ! | AGCGTGATATGATAGCCTTG+CGG | + | chr8_2:12618507-12618526 | None:intergenic | 45.0% |
| AGTAGCTGTGGTTGTATCTG+TGG | - | chr8_2:12618766-12618785 | Msa1234870:CDS | 45.0% | |
| GTAGCTGTGGTTGTATCTGT+GGG | - | chr8_2:12618767-12618786 | Msa1234870:CDS | 45.0% | |
| TGTGGGATGGATATGCTATG+AGG | - | chr8_2:12618784-12618803 | Msa1234870:CDS | 45.0% | |
| ACAGAACTTGCCAAAAGGCT+GGG | + | chr8_2:12619093-12619112 | None:intergenic | 45.0% | |
| TGTGTGTCATCTGTGTTGTC+TGG | - | chr8_2:12619125-12619144 | Msa1234870:intron | 45.0% | |
| GTGTGTCATCTGTGTTGTCT+GGG | - | chr8_2:12619126-12619145 | Msa1234870:intron | 45.0% | |
| ! | AAAGCTCGTCTTGTTACTGC+AGG | + | chr8_2:12619454-12619473 | None:intergenic | 45.0% |
| AGATATGCTTACCGTGACGA+TGG | - | chr8_2:12619548-12619567 | Msa1234870:intron | 45.0% | |
| GATATGCTTACCGTGACGAT+GGG | - | chr8_2:12619549-12619568 | Msa1234870:intron | 45.0% | |
| !! | AAAATAAAATAAAAACTAAA+AGG | + | chr8_2:12619812-12619831 | None:intergenic | 5.0% |
| AGCGAAACTTTCTCCCCCAA+AGG | - | chr8_2:12616684-12616703 | Msa1234870:three_prime_UTR | 50.0% | |
| !! | GGCAACGCTTTTGTTGTCCA+TGG | - | chr8_2:12616705-12616724 | Msa1234870:three_prime_UTR | 50.0% |
| GTTGTCCATGGAGGAAGTGA+AGG | - | chr8_2:12616717-12616736 | Msa1234870:three_prime_UTR | 50.0% | |
| ! | ACAATTGGTGGTTCGGCCTA+TGG | - | chr8_2:12617671-12617690 | Msa1234870:intron | 50.0% |
| TTCGGCCTATGGAGGTCAAA+GGG | - | chr8_2:12617682-12617701 | Msa1234870:intron | 50.0% | |
| ! | TGTCTGTTGCACTGGTGATC+TGG | - | chr8_2:12617706-12617725 | Msa1234870:CDS | 50.0% |
| TGGTGTGTGCAATGAAGGAC+AGG | - | chr8_2:12617736-12617755 | Msa1234870:CDS | 50.0% | |
| !!! | TCGGACTGGCCTCAAGTTTT+CGG | - | chr8_2:12617785-12617804 | Msa1234870:intron | 50.0% |
| ACGGTATGGAAGAATCCCTC+TGG | - | chr8_2:12617941-12617960 | Msa1234870:intron | 50.0% | |
| AATCCCTCTGGCTATCTACC+CGG | - | chr8_2:12617953-12617972 | Msa1234870:intron | 50.0% | |
| TGGCTATCTACCCGGTAGAA+TGG | - | chr8_2:12617961-12617980 | Msa1234870:intron | 50.0% | |
| GAAACAGGAATCAGGCCAAC+TGG | - | chr8_2:12618166-12618185 | Msa1234870:CDS | 50.0% | |
| GCCAACTGGGACAACTGTAT+GGG | - | chr8_2:12618180-12618199 | Msa1234870:CDS | 50.0% | |
| CTATCAAGAGAACGGTTGCG+AGG | - | chr8_2:12618218-12618237 | Msa1234870:CDS | 50.0% | |
| ! | GGTGTTGTGAGACCTACTCT+TGG | - | chr8_2:12618271-12618290 | Msa1234870:CDS | 50.0% |
| GTTGTGAGACCTACTCTTGG+AGG | - | chr8_2:12618274-12618293 | Msa1234870:CDS | 50.0% | |
| GATGTAAGGCCTCCAAGAGT+AGG | + | chr8_2:12618286-12618305 | None:intergenic | 50.0% | |
| AACACGTCTAATACGGCAGC+AGG | + | chr8_2:12618424-12618443 | None:intergenic | 50.0% | |
| CACAGCTACTGCCAAAGCAT+TGG | + | chr8_2:12618756-12618775 | None:intergenic | 50.0% | |
| CAATGCTTTGGCAGTAGCTG+TGG | - | chr8_2:12618754-12618773 | Msa1234870:CDS | 50.0% | |
| CTGTGGTTGTATCTGTGGGA+TGG | - | chr8_2:12618771-12618790 | Msa1234870:CDS | 50.0% | |
| ! | CTTGGATCATCCCAGCCTTT+TGG | - | chr8_2:12619080-12619099 | Msa1234870:intron | 50.0% |
| GACAGAACTTGCCAAAAGGC+TGG | + | chr8_2:12619094-12619113 | None:intergenic | 50.0% | |
| ATGGGAGCGAAGAGTTCGAT+AGG | - | chr8_2:12619567-12619586 | Msa1234870:intron | 50.0% | |
| TGGGAGCGAAGAGTTCGATA+GGG | - | chr8_2:12619568-12619587 | Msa1234870:intron | 50.0% | |
| ACCAAAGGATGTGAGTGTGC+CGG | - | chr8_2:12619628-12619647 | Msa1234870:intron | 50.0% | |
| ! | CCTTGTACTGGTCTAGCATC+CGG | + | chr8_2:12619650-12619669 | None:intergenic | 50.0% |
| ! | ATTGGTGGTTCGGCCTATGG+AGG | - | chr8_2:12617674-12617693 | Msa1234870:intron | 55.0% |
| GTTCGGCCTATGGAGGTCAA+AGG | - | chr8_2:12617681-12617700 | Msa1234870:intron | 55.0% | |
| GACAGCCCTTTGACCTCCAT+AGG | + | chr8_2:12617690-12617709 | None:intergenic | 55.0% | |
| CAAAGGGCTGTCTGTTGCAC+TGG | - | chr8_2:12617698-12617717 | Msa1234870:CDS | 55.0% | |
| AACGCGACGCCGAAAACTTG+AGG | + | chr8_2:12617797-12617816 | None:intergenic | 55.0% | |
| CTACCGGGTAGATAGCCAGA+GGG | + | chr8_2:12617959-12617978 | None:intergenic | 55.0% | |
| TCTACCGGGTAGATAGCCAG+AGG | + | chr8_2:12617960-12617979 | None:intergenic | 55.0% | |
| GGCCAACTGGGACAACTGTA+TGG | - | chr8_2:12618179-12618198 | Msa1234870:CDS | 55.0% | |
| GCCCATACAGTTGTCCCAGT+TGG | + | chr8_2:12618184-12618203 | None:intergenic | 55.0% | |
| ACTCTTCGCTCCCATCGTCA+CGG | + | chr8_2:12619562-12619581 | None:intergenic | 55.0% | |
| TCCGGCACACTCACATCCTT+TGG | + | chr8_2:12619632-12619651 | None:intergenic | 55.0% | |
| CCGGATGCTAGACCAGTACA+AGG | - | chr8_2:12619647-12619666 | Msa1234870:intron | 55.0% | |
| AGGAGTGGGGTGTGGATCTG+TGG | + | chr8_2:12616574-12616593 | None:intergenic | 60.0% | |
| GAGAGAGAAGGAGTGGGGTG+TGG | + | chr8_2:12616582-12616601 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 12616476 | 12620018 | 12616476 | ID=Msa1234870;Name=Msa1234870 |
| chr8_2 | mRNA | 12616476 | 12620018 | 12616476 | ID=Msa1234870-mRNA-1;Parent=Msa1234870;Name=Msa1234870-mRNA-1;_AED=0.05;_eAED=0.05;_QI=130|1|1|1|1|1|5|300|505 |
| chr8_2 | exon | 12616476 | 12616944 | 12616476 | ID=Msa1234870-mRNA-1:exon:4897;Parent=Msa1234870-mRNA-1 |
| chr8_2 | exon | 12617324 | 12617460 | 12617324 | ID=Msa1234870-mRNA-1:exon:4896;Parent=Msa1234870-mRNA-1 |
| chr8_2 | exon | 12617689 | 12617784 | 12617689 | ID=Msa1234870-mRNA-1:exon:4895;Parent=Msa1234870-mRNA-1 |
| chr8_2 | exon | 12617999 | 12618917 | 12617999 | ID=Msa1234870-mRNA-1:exon:4894;Parent=Msa1234870-mRNA-1 |
| chr8_2 | exon | 12619692 | 12620018 | 12619692 | ID=Msa1234870-mRNA-1:exon:4893;Parent=Msa1234870-mRNA-1 |
| chr8_2 | five_prime_UTR | 12619889 | 12620018 | 12619889 | ID=Msa1234870-mRNA-1:five_prime_utr;Parent=Msa1234870-mRNA-1 |
| chr8_2 | CDS | 12619692 | 12619888 | 12619692 | ID=Msa1234870-mRNA-1:cds;Parent=Msa1234870-mRNA-1 |
| chr8_2 | CDS | 12617999 | 12618917 | 12617999 | ID=Msa1234870-mRNA-1:cds;Parent=Msa1234870-mRNA-1 |
| chr8_2 | CDS | 12617689 | 12617784 | 12617689 | ID=Msa1234870-mRNA-1:cds;Parent=Msa1234870-mRNA-1 |
| chr8_2 | CDS | 12617324 | 12617460 | 12617324 | ID=Msa1234870-mRNA-1:cds;Parent=Msa1234870-mRNA-1 |
| chr8_2 | CDS | 12616776 | 12616944 | 12616776 | ID=Msa1234870-mRNA-1:cds;Parent=Msa1234870-mRNA-1 |
| chr8_2 | three_prime_UTR | 12616476 | 12616775 | 12616476 | ID=Msa1234870-mRNA-1:three_prime_utr;Parent=Msa1234870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
