Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1269400 | YP_009141600.1 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 3.55e-143 | 407 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1269400 | sp|Q9BBT5|RR4_LOTJA | 95.522 | 201 | 9 | 0 | 1 | 201 | 1 | 201 | 8.95e-140 | 391 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1269400 | A0A0F6NLD0 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 1.70e-143 | 407 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0095190 | Msa1269400 | 0.814746 | 1.316658e-51 | -8.615850e-47 |
Msa1269400 | Msa1269420 | 0.918468 | 1.502044e-86 | -8.615850e-47 |
Msa1269400 | Msa1354320 | 0.806421 | 8.294369e-50 | -8.615850e-47 |
Msa1269400 | Msa1354330 | 0.828315 | 9.626011e-55 | -8.615850e-47 |
Msa1269400 | Msa1354340 | 0.805358 | 1.387135e-49 | -8.615850e-47 |
Msa1269400 | Msa1354350 | 0.874011 | 9.425077e-68 | -8.615850e-47 |
Msa1269400 | Msa1354380 | 0.875161 | 3.831608e-68 | -8.615850e-47 |
Msa1269400 | Msa1354390 | 0.861289 | 1.138675e-63 | -8.615850e-47 |
Msa1269400 | Msa1354900 | 0.834910 | 2.279807e-56 | -8.615850e-47 |
Msa1269400 | Msa1354910 | 0.800001 | 1.768711e-48 | -8.615850e-47 |
Msa1269400 | Msa1354930 | 0.800424 | 1.450921e-48 | -8.615850e-47 |
Msa1269400 | Msa1354950 | 0.848360 | 6.439847e-60 | -8.615850e-47 |
Msa1269400 | Msa1355070 | 0.821075 | 4.895499e-53 | -8.615850e-47 |
Msa1269400 | Msa1355100 | 0.818426 | 1.972817e-52 | -8.615850e-47 |
Msa1269400 | Msa1366000 | 0.815496 | 8.971780e-52 | -8.615850e-47 |
Msa1269400 | Msa1366010 | 0.870903 | 1.026596e-66 | -8.615850e-47 |
Msa1269400 | Msa1366040 | 0.826404 | 2.764596e-54 | -8.615850e-47 |
Msa1269400 | Msa1366050 | 0.866005 | 3.909963e-65 | -8.615850e-47 |
Msa1269400 | Msa1368270 | 0.841488 | 4.610275e-58 | -8.615850e-47 |
Msa1269400 | Msa1368280 | 0.843566 | 1.294963e-58 | -8.615850e-47 |
Msa1269400 | Msa1368290 | 0.852784 | 3.676624e-61 | -8.615850e-47 |
Msa1269400 | Msa1368300 | 0.850314 | 1.839262e-60 | -8.615850e-47 |
Msa1269400 | Msa1380590 | 0.821135 | 4.742836e-53 | -8.615850e-47 |
Msa1269400 | Msa1380600 | 0.812681 | 3.751019e-51 | -8.615850e-47 |
Msa1269400 | Msa1380640 | 0.874869 | 4.818171e-68 | -8.615850e-47 |
Msa1269400 | Msa1380650 | 0.817929 | 2.555046e-52 | -8.615850e-47 |
Msa1269400 | Msa1380710 | 0.856653 | 2.782379e-62 | -8.615850e-47 |
Msa1269400 | Msa1385370 | 0.819746 | 9.877062e-53 | -8.615850e-47 |
Msa1269400 | Msa1394040 | 0.808936 | 2.423873e-50 | -8.615850e-47 |
Msa1269400 | Msa1394060 | 0.802102 | 6.577143e-49 | -8.615850e-47 |
Msa1269400 | Msa1394130 | 0.821732 | 3.453354e-53 | -8.615850e-47 |
Msa1269400 | Msa1394220 | 0.820929 | 5.289170e-53 | -8.615850e-47 |
Msa1269400 | Msa1394230 | 0.812879 | 3.395288e-51 | -8.615850e-47 |
Msa1269400 | Msa1394250 | 0.800592 | 1.340451e-48 | -8.615850e-47 |
Msa1269400 | Msa1398700 | 0.832553 | 8.854388e-56 | -8.615850e-47 |
Msa1269400 | Msa1398720 | 0.876345 | 1.503001e-68 | -8.615850e-47 |
Msa0370210 | Msa1269400 | 0.818256 | 2.155403e-52 | -8.615850e-47 |
Msa0983720 | Msa1269400 | 0.819539 | 1.101403e-52 | -8.615850e-47 |
Msa1086070 | Msa1269400 | 0.814527 | 1.472373e-51 | -8.615850e-47 |
Msa1086100 | Msa1269400 | 0.800319 | 1.523641e-48 | -8.615850e-47 |
Msa1086150 | Msa1269400 | 0.820465 | 6.762156e-53 | -8.615850e-47 |
Msa1086180 | Msa1269400 | 0.824634 | 7.256526e-54 | -8.615850e-47 |
Msa1086210 | Msa1269400 | 0.801979 | 6.972108e-49 | -8.615850e-47 |
Msa1086250 | Msa1269400 | 0.800811 | 1.209809e-48 | -8.615850e-47 |
Msa1086270 | Msa1269400 | 0.811992 | 5.304911e-51 | -8.615850e-47 |
Msa1086280 | Msa1269400 | 0.811197 | 7.896024e-51 | -8.615850e-47 |
Msa1086380 | Msa1269400 | 0.813416 | 2.587630e-51 | -8.615850e-47 |
Msa1086450 | Msa1269400 | 0.813329 | 2.705159e-51 | -8.615850e-47 |
Msa1086470 | Msa1269400 | 0.807248 | 5.546668e-50 | -8.615850e-47 |
Msa1086880 | Msa1269400 | 0.807774 | 4.289167e-50 | -8.615850e-47 |
Msa1086890 | Msa1269400 | 0.800454 | 1.430355e-48 | -8.615850e-47 |
Msa1086910 | Msa1269400 | 0.809737 | 1.632206e-50 | -8.615850e-47 |
Msa0268170 | Msa1269400 | 0.816894 | 4.370866e-52 | -8.615850e-47 |
Msa0268390 | Msa1269400 | 0.830983 | 2.159097e-55 | -8.615850e-47 |
Msa0268400 | Msa1269400 | 0.821646 | 3.614980e-53 | -8.615850e-47 |
Msa0268410 | Msa1269400 | 0.818240 | 2.173344e-52 | -8.615850e-47 |
Msa0268550 | Msa1269400 | 0.828641 | 8.028510e-55 | -8.615850e-47 |
Msa0268560 | Msa1269400 | 0.808334 | 3.259557e-50 | -8.615850e-47 |
Msa0268630 | Msa1269400 | 0.804923 | 1.710672e-49 | -8.615850e-47 |
Msa0268640 | Msa1269400 | 0.811931 | 5.470198e-51 | -8.615850e-47 |
Msa0268720 | Msa1269400 | 0.812762 | 3.600473e-51 | -8.615850e-47 |
Msa0268740 | Msa1269400 | 0.813845 | 2.082874e-51 | -8.615850e-47 |
Msa0268840 | Msa1269400 | 0.802540 | 5.345973e-49 | -8.615850e-47 |
Msa0268940 | Msa1269400 | 0.823857 | 1.105380e-53 | -8.615850e-47 |
Msa0268950 | Msa1269400 | 0.800351 | 1.501488e-48 | -8.615850e-47 |
Msa0269040 | Msa1269400 | 0.802904 | 4.495885e-49 | -8.615850e-47 |
Msa0269050 | Msa1269400 | 0.819412 | 1.177495e-52 | -8.615850e-47 |
Msa0344190 | Msa1269400 | 0.817756 | 2.795860e-52 | -8.615850e-47 |
Msa0344300 | Msa1269400 | 0.807947 | 3.941149e-50 | -8.615850e-47 |
Msa1143130 | Msa1269400 | 0.814735 | 1.324075e-51 | -8.615850e-47 |
Msa1143180 | Msa1269400 | 0.804133 | 2.500212e-49 | -8.615850e-47 |
Msa0483990 | Msa1269400 | 0.800706 | 1.270687e-48 | -8.615850e-47 |
Msa0582510 | Msa1269400 | 0.809402 | 1.926304e-50 | -8.615850e-47 |
Msa0582520 | Msa1269400 | 0.831357 | 1.747283e-55 | -8.615850e-47 |
Msa0582630 | Msa1269400 | 0.813397 | 2.612673e-51 | -8.615850e-47 |
Msa0582660 | Msa1269400 | 0.813014 | 3.171393e-51 | -8.615850e-47 |
Msa0582700 | Msa1269400 | 0.827995 | 1.149371e-54 | -8.615850e-47 |
Msa0582720 | Msa1269400 | 0.800224 | 1.593486e-48 | -8.615850e-47 |
Msa0582750 | Msa1269400 | 0.822033 | 2.940663e-53 | -8.615850e-47 |
Msa0582760 | Msa1269400 | 0.803451 | 3.463689e-49 | -8.615850e-47 |
Msa0582780 | Msa1269400 | 0.810949 | 8.938187e-51 | -8.615850e-47 |
Msa0582820 | Msa1269400 | 0.820798 | 5.669949e-53 | -8.615850e-47 |
Msa0582910 | Msa1269400 | 0.808529 | 2.960928e-50 | -8.615850e-47 |
Msa0582930 | Msa1269400 | 0.800135 | 1.661293e-48 | -8.615850e-47 |
Msa0867640 | Msa1269400 | 0.856537 | 3.008046e-62 | -8.615850e-47 |
Msa0867650 | Msa1269400 | 0.808190 | 3.498731e-50 | -8.615850e-47 |
Msa0924870 | Msa1269400 | 0.813049 | 3.115203e-51 | -8.615850e-47 |
Msa0925040 | Msa1269400 | 0.804644 | 1.956730e-49 | -8.615850e-47 |
Msa0931080 | Msa1269400 | 0.805520 | 1.282812e-49 | -8.615850e-47 |
Msa0931100 | Msa1269400 | 0.813001 | 3.192537e-51 | -8.615850e-47 |
Msa0931130 | Msa1269400 | 0.802877 | 4.554608e-49 | -8.615850e-47 |
Msa0931140 | Msa1269400 | 0.815415 | 9.354602e-52 | -8.615850e-47 |
Msa0931190 | Msa1269400 | 0.813105 | 3.028586e-51 | -8.615850e-47 |
Msa0931210 | Msa1269400 | 0.811010 | 8.669118e-51 | -8.615850e-47 |
Msa0931240 | Msa1269400 | 0.816079 | 6.651050e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1269400 | MtrunA17_Chr7g0229301 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
Msa1269400 | MtrunA17_Chr6g0454441 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
Msa1269400 | MtrunA17_Chr4g0016451 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
Msa1269400 | MtrunA17_Chr6g0466281 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
Msa1269400 | MtrunA17_CPg0493311 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
Msa1269400 | MtrunA17_Chr7g0229661 | 84.080 | 201 | 13 | 1 | 1 | 201 | 1 | 182 | 1.89e-115 | 327 |
Msa1269400 | MtrunA17_Chr4g0015291 | 97.436 | 156 | 4 | 0 | 1 | 156 | 1 | 156 | 3.32e-108 | 307 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1269400 | ATCG00380.1 | 88.060 | 201 | 24 | 0 | 1 | 201 | 1 | 201 | 2.12e-126 | 355 |
Find 33 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCAAATAATAGATAGTAAA+TGG | 0.189787 | 8_3:-2549654 | Msa1269400:CDS |
GATTGACTAATCCTTTATAT+TGG | 0.284280 | 8_3:+2549674 | None:intergenic |
CTTGATCCATTCCAATATAA+AGG | 0.291752 | 8_3:-2549685 | Msa1269400:CDS |
CTTAAATACGTTCGTATCGC+TGG | 0.342652 | 8_3:-2549985 | Msa1269400:CDS |
ACAATTACTTGAAATGCGTT+TGG | 0.359489 | 8_3:-2549929 | Msa1269400:CDS |
TTTGAAAATTAATGAATTGC+TGG | 0.365999 | 8_3:-2549626 | Msa1269400:CDS |
ATGGATTGGCAATTCTTCGC+GGG | 0.450528 | 8_3:+2549714 | None:intergenic |
TACCAGGACTAACTAGTAAA+CGG | 0.463029 | 8_3:-2550128 | Msa1269400:CDS |
TGAGGTTTGCAACGATAACT+TGG | 0.468099 | 8_3:+2549805 | None:intergenic |
ACTAATCCTTTATATTGGAA+TGG | 0.475526 | 8_3:+2549679 | None:intergenic |
GTCTGTGGTTAACTAATTGA+CGG | 0.477609 | 8_3:+2549860 | None:intergenic |
TCAAATAATAGATAGTAAAT+GGG | 0.487910 | 8_3:-2549653 | Msa1269400:CDS |
ATAATAGATAGTAAATGGGT+TGG | 0.504615 | 8_3:-2549649 | Msa1269400:CDS |
CTAAGTTCGCTTCCAACTGT+AGG | 0.508663 | 8_3:+2550105 | None:intergenic |
GGATCAAGAGTCAAATGGAT+TGG | 0.511159 | 8_3:+2549700 | None:intergenic |
GGAAAAGCGAAAGGTTCAAC+CGG | 0.516182 | 8_3:-2549964 | Msa1269400:CDS |
TCTGTGGTTAACTAATTGAC+GGG | 0.521261 | 8_3:+2549861 | None:intergenic |
GGCCGTTTACTAGTTAGTCC+TGG | 0.527000 | 8_3:+2550126 | None:intergenic |
AATGGATTGGCAATTCTTCG+CGG | 0.545268 | 8_3:+2549713 | None:intergenic |
TCAAGATATTATTACAGCGA+AGG | 0.559737 | 8_3:-2549785 | Msa1269400:CDS |
TTCGCTGTAATAATATCTTG+AGG | 0.560954 | 8_3:+2549787 | None:intergenic |
TAATTGTAGTAAAACTTGAC+CGG | 0.568250 | 8_3:+2549945 | None:intergenic |
ACTAGTAAACGGCCTACAGT+TGG | 0.568372 | 8_3:-2550117 | Msa1269400:CDS |
CAAGATATTATTACAGCGAA+GGG | 0.569002 | 8_3:-2549784 | Msa1269400:CDS |
TTAACTAATTGACGGGCTTG+AGG | 0.581554 | 8_3:+2549868 | None:intergenic |
GGAATGGATCAAGAGTCAAA+TGG | 0.582974 | 8_3:+2549695 | None:intergenic |
GATTGGCAATTCTTCGCGGG+GGG | 0.584547 | 8_3:+2549717 | None:intergenic |
TGGATTGGCAATTCTTCGCG+GGG | 0.610754 | 8_3:+2549715 | None:intergenic |
TGTTTATGTCACGTTACAGA+GGG | 0.632465 | 8_3:-2550185 | None:intergenic |
GTGTTTATGTCACGTTACAG+AGG | 0.633128 | 8_3:-2550186 | None:intergenic |
CGTATCGCTGGAAAAGCGAA+AGG | 0.633501 | 8_3:-2549973 | Msa1269400:CDS |
CATTAACTAAAACATGTCTG+TGG | 0.663264 | 8_3:+2549845 | None:intergenic |
GGATTGGCAATTCTTCGCGG+GGG | 0.681198 | 8_3:+2549716 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATCAAATAATAGATAGTAAA+TGG | - | chr8_3:2550123-2550142 | Msa1269400:CDS | 15.0% |
!! | TCAAATAATAGATAGTAAAT+GGG | - | chr8_3:2550124-2550143 | Msa1269400:CDS | 15.0% |
!! | TTTGAAAATTAATGAATTGC+TGG | - | chr8_3:2550151-2550170 | Msa1269400:CDS | 20.0% |
!! | CAAAAATTGCGTTTTCATTA+TGG | - | chr8_3:2549750-2549769 | Msa1269400:CDS | 25.0% |
! | TAATTGTAGTAAAACTTGAC+CGG | + | chr8_3:2549835-2549854 | None:intergenic | 25.0% |
!!! | GATAACATACTTTTTCGATT+GGG | - | chr8_3:2549870-2549889 | Msa1269400:CDS | 25.0% |
! | ACTAATCCTTTATATTGGAA+TGG | + | chr8_3:2550101-2550120 | None:intergenic | 25.0% |
! | GATTGACTAATCCTTTATAT+TGG | + | chr8_3:2550106-2550125 | None:intergenic | 25.0% |
! | ATAATAGATAGTAAATGGGT+TGG | - | chr8_3:2550128-2550147 | Msa1269400:CDS | 25.0% |
TTTCAAAAAAATACGTCGTC+TGG | - | chr8_3:2549620-2549639 | Msa1269400:CDS | 30.0% | |
TTCAAAAAAATACGTCGTCT+GGG | - | chr8_3:2549621-2549640 | Msa1269400:CDS | 30.0% | |
ACAATTACTTGAAATGCGTT+TGG | - | chr8_3:2549848-2549867 | Msa1269400:CDS | 30.0% | |
!!! | GGATAACATACTTTTTCGAT+TGG | - | chr8_3:2549869-2549888 | Msa1269400:CDS | 30.0% |
CATTAACTAAAACATGTCTG+TGG | + | chr8_3:2549935-2549954 | None:intergenic | 30.0% | |
!!! | CACAGACATGTTTTAGTTAA+TGG | - | chr8_3:2549933-2549952 | Msa1269400:CDS | 30.0% |
TTCGCTGTAATAATATCTTG+AGG | + | chr8_3:2549993-2550012 | None:intergenic | 30.0% | |
TCAAGATATTATTACAGCGA+AGG | - | chr8_3:2549992-2550011 | Msa1269400:CDS | 30.0% | |
CAAGATATTATTACAGCGAA+GGG | - | chr8_3:2549993-2550012 | Msa1269400:CDS | 30.0% | |
CTTGATCCATTCCAATATAA+AGG | - | chr8_3:2550092-2550111 | Msa1269400:CDS | 30.0% | |
!!! | CGACGTATTTTTTTGAAACG+AGG | + | chr8_3:2549618-2549637 | None:intergenic | 35.0% |
TCAAAAAAATACGTCGTCTG+GGG | - | chr8_3:2549622-2549641 | Msa1269400:CDS | 35.0% | |
TACCAGGACTAACTAGTAAA+CGG | - | chr8_3:2549649-2549668 | Msa1269400:CDS | 35.0% | |
!!! | CATACTTTTTCGATTGGGTA+TGG | - | chr8_3:2549875-2549894 | Msa1269400:CDS | 35.0% |
TCTGTGGTTAACTAATTGAC+GGG | + | chr8_3:2549919-2549938 | None:intergenic | 35.0% | |
GTCTGTGGTTAACTAATTGA+CGG | + | chr8_3:2549920-2549939 | None:intergenic | 35.0% | |
CAAAAAAATACGTCGTCTGG+GGG | - | chr8_3:2549623-2549642 | Msa1269400:CDS | 40.0% | |
!!! | ATTTTTTACTCGAGCGCGAT+TGG | + | chr8_3:2549701-2549720 | None:intergenic | 40.0% |
CTTAAATACGTTCGTATCGC+TGG | - | chr8_3:2549792-2549811 | Msa1269400:CDS | 40.0% | |
!! | TTAACTAATTGACGGGCTTG+AGG | + | chr8_3:2549912-2549931 | None:intergenic | 40.0% |
TGAGGTTTGCAACGATAACT+TGG | + | chr8_3:2549975-2549994 | None:intergenic | 40.0% | |
!! | AATGGATTGGCAATTCTTCG+CGG | + | chr8_3:2550067-2550086 | None:intergenic | 40.0% |
GGATCAAGAGTCAAATGGAT+TGG | + | chr8_3:2550080-2550099 | None:intergenic | 40.0% | |
GGAATGGATCAAGAGTCAAA+TGG | + | chr8_3:2550085-2550104 | None:intergenic | 40.0% | |
ACTAGTAAACGGCCTACAGT+TGG | - | chr8_3:2549660-2549679 | Msa1269400:CDS | 45.0% | |
CTAAGTTCGCTTCCAACTGT+AGG | + | chr8_3:2549675-2549694 | None:intergenic | 45.0% | |
GGAAAAGCGAAAGGTTCAAC+CGG | - | chr8_3:2549813-2549832 | Msa1269400:CDS | 45.0% | |
!! | ATGGATTGGCAATTCTTCGC+GGG | + | chr8_3:2550066-2550085 | None:intergenic | 45.0% |
GGCCGTTTACTAGTTAGTCC+TGG | + | chr8_3:2549654-2549673 | None:intergenic | 50.0% | |
CGTATCGCTGGAAAAGCGAA+AGG | - | chr8_3:2549804-2549823 | Msa1269400:CDS | 50.0% | |
!! | TGGATTGGCAATTCTTCGCG+GGG | + | chr8_3:2550065-2550084 | None:intergenic | 50.0% |
GATTGGCAATTCTTCGCGGG+GGG | + | chr8_3:2550063-2550082 | None:intergenic | 55.0% | |
! | GGATTGGCAATTCTTCGCGG+GGG | + | chr8_3:2550064-2550083 | None:intergenic | 55.0% |
CGTCGTCTGGGGGCTTTACC+AGG | - | chr8_3:2549633-2549652 | Msa1269400:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_3 | gene | 2549597 | 2550202 | 2549597 | ID=Msa1269400;Name=Msa1269400 |
chr8_3 | mRNA | 2549597 | 2550202 | 2549597 | ID=Msa1269400-mRNA-1;Parent=Msa1269400;Name=Msa1269400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|201 |
chr8_3 | exon | 2549597 | 2550202 | 2549597 | ID=Msa1269400-mRNA-1:exon:811;Parent=Msa1269400-mRNA-1 |
chr8_3 | CDS | 2549597 | 2550202 | 2549597 | ID=Msa1269400-mRNA-1:cds;Parent=Msa1269400-mRNA-1 |
Gene Sequence |
Protein sequence |