Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398720 | YP_009141600.1 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 3.55e-143 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398720 | sp|Q9BBT5|RR4_LOTJA | 95.522 | 201 | 9 | 0 | 1 | 201 | 1 | 201 | 8.95e-140 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398720 | A0A0F6NLD0 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 1.70e-143 | 407 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030710 | Msa1398720 | 0.804186 | 2.438010e-49 | -8.615850e-47 |
| Msa0095150 | Msa1398720 | 0.801243 | 9.870801e-49 | -8.615850e-47 |
| Msa0095170 | Msa1398720 | 0.833691 | 4.610746e-56 | -8.615850e-47 |
| Msa0095190 | Msa1398720 | 0.835508 | 1.611013e-56 | -8.615850e-47 |
| Msa0095210 | Msa1398720 | 0.818845 | 1.584713e-52 | -8.615850e-47 |
| Msa0095290 | Msa1398720 | 0.823599 | 1.269714e-53 | -8.615850e-47 |
| Msa0102290 | Msa1398720 | 0.804482 | 2.114933e-49 | -8.615850e-47 |
| Msa1354320 | Msa1398720 | 0.831493 | 1.618011e-55 | -8.615850e-47 |
| Msa1354330 | Msa1398720 | 0.809181 | 2.148360e-50 | -8.615850e-47 |
| Msa1354340 | Msa1398720 | 0.820473 | 6.732467e-53 | -8.615850e-47 |
| Msa1354350 | Msa1398720 | 0.873283 | 1.658457e-67 | -8.615850e-47 |
| Msa1354380 | Msa1398720 | 0.902069 | 1.411795e-78 | -8.615850e-47 |
| Msa1354390 | Msa1398720 | 0.870712 | 1.185726e-66 | -8.615850e-47 |
| Msa1354880 | Msa1398720 | 0.808259 | 3.382367e-50 | -8.615850e-47 |
| Msa1354900 | Msa1398720 | 0.865642 | 5.091266e-65 | -8.615850e-47 |
| Msa1354910 | Msa1398720 | 0.808076 | 3.698650e-50 | -8.615850e-47 |
| Msa1354920 | Msa1398720 | 0.815350 | 9.670656e-52 | -8.615850e-47 |
| Msa1354930 | Msa1398720 | 0.846484 | 2.109770e-59 | -8.615850e-47 |
| Msa1354950 | Msa1398720 | 0.876001 | 1.974363e-68 | -8.615850e-47 |
| Msa1355050 | Msa1398720 | 0.841121 | 5.757392e-58 | -8.615850e-47 |
| Msa1355070 | Msa1398720 | 0.861750 | 8.237582e-64 | -8.615850e-47 |
| Msa1355080 | Msa1398720 | 0.823319 | 1.476626e-53 | -8.615850e-47 |
| Msa1355090 | Msa1398720 | 0.813678 | 2.266112e-51 | -8.615850e-47 |
| Msa1355100 | Msa1398720 | 0.837557 | 4.845658e-57 | -8.615850e-47 |
| Msa1366000 | Msa1398720 | 0.848371 | 6.398208e-60 | -8.615850e-47 |
| Msa1366010 | Msa1398720 | 0.880161 | 6.890856e-70 | -8.615850e-47 |
| Msa1366040 | Msa1398720 | 0.844519 | 7.191454e-59 | -8.615850e-47 |
| Msa1366050 | Msa1398720 | 0.878914 | 1.909164e-69 | -8.615850e-47 |
| Msa1368270 | Msa1398720 | 0.876167 | 1.731752e-68 | -8.615850e-47 |
| Msa1368280 | Msa1398720 | 0.882507 | 9.831685e-71 | -8.615850e-47 |
| Msa1368290 | Msa1398720 | 0.888134 | 7.728923e-73 | -8.615850e-47 |
| Msa1368300 | Msa1398720 | 0.891287 | 4.559915e-74 | -8.615850e-47 |
| Msa1374610 | Msa1398720 | 0.802880 | 4.548051e-49 | -8.615850e-47 |
| Msa1380570 | Msa1398720 | 0.823828 | 1.122503e-53 | -8.615850e-47 |
| Msa1380590 | Msa1398720 | 0.835576 | 1.548688e-56 | -8.615850e-47 |
| Msa1380600 | Msa1398720 | 0.828251 | 9.976016e-55 | -8.615850e-47 |
| Msa1380610 | Msa1398720 | 0.811453 | 6.947691e-51 | -8.615850e-47 |
| Msa1380620 | Msa1398720 | 0.823422 | 1.396869e-53 | -8.615850e-47 |
| Msa1380640 | Msa1398720 | 0.884838 | 1.362273e-71 | -8.615850e-47 |
| Msa1380650 | Msa1398720 | 0.816774 | 4.649786e-52 | -8.615850e-47 |
| Msa1380710 | Msa1398720 | 0.875607 | 2.696779e-68 | -8.615850e-47 |
| Msa1385370 | Msa1398720 | 0.824530 | 7.680967e-54 | -8.615850e-47 |
| Msa1385380 | Msa1398720 | 0.810790 | 9.676125e-51 | -8.615850e-47 |
| Msa1389990 | Msa1398720 | 0.800734 | 1.253974e-48 | -8.615850e-47 |
| Msa1394030 | Msa1398720 | 0.806467 | 8.111788e-50 | -8.615850e-47 |
| Msa1394040 | Msa1398720 | 0.826687 | 2.365816e-54 | -8.615850e-47 |
| Msa1394060 | Msa1398720 | 0.845291 | 4.449476e-59 | -8.615850e-47 |
| Msa1394130 | Msa1398720 | 0.828773 | 7.462150e-55 | -8.615850e-47 |
| Msa1394150 | Msa1398720 | 0.835111 | 2.029057e-56 | -8.615850e-47 |
| Msa1394160 | Msa1398720 | 0.825158 | 5.460087e-54 | -8.615850e-47 |
| Msa1394170 | Msa1398720 | 0.803104 | 4.088261e-49 | -8.615850e-47 |
| Msa1394210 | Msa1398720 | 0.819820 | 9.500840e-53 | -8.615850e-47 |
| Msa1394220 | Msa1398720 | 0.843781 | 1.134180e-58 | -8.615850e-47 |
| Msa1394230 | Msa1398720 | 0.857849 | 1.233191e-62 | -8.615850e-47 |
| Msa1394250 | Msa1398720 | 0.831441 | 1.666148e-55 | -8.615850e-47 |
| Msa1398700 | Msa1398720 | 0.894613 | 2.092035e-75 | -8.615850e-47 |
| Msa1398710 | Msa1398720 | 0.814168 | 1.767175e-51 | -8.615850e-47 |
| Msa1398720 | Msa1400330 | 0.801137 | 1.037569e-48 | -8.615850e-47 |
| Msa0704750 | Msa1398720 | 0.805781 | 1.131207e-49 | -8.615850e-47 |
| Msa0708120 | Msa1398720 | 0.806051 | 9.925457e-50 | -8.615850e-47 |
| Msa0727020 | Msa1398720 | 0.804047 | 2.606009e-49 | -8.615850e-47 |
| Msa0124070 | Msa1398720 | 0.801332 | 9.464348e-49 | -8.615850e-47 |
| Msa0139810 | Msa1398720 | 0.808346 | 3.239475e-50 | -8.615850e-47 |
| Msa0170550 | Msa1398720 | 0.805249 | 1.462267e-49 | -8.615850e-47 |
| Msa0173880 | Msa1398720 | 0.824245 | 8.962850e-54 | -8.615850e-47 |
| Msa0186750 | Msa1398720 | 0.805459 | 1.321424e-49 | -8.615850e-47 |
| Msa0202640 | Msa1398720 | 0.832904 | 7.243526e-56 | -8.615850e-47 |
| Msa0221840 | Msa1398720 | 0.827980 | 1.159399e-54 | -8.615850e-47 |
| Msa1269400 | Msa1398720 | 0.876345 | 1.503001e-68 | -8.615850e-47 |
| Msa1269410 | Msa1398720 | 0.810235 | 1.274765e-50 | -8.615850e-47 |
| Msa1269420 | Msa1398720 | 0.891064 | 5.586454e-74 | -8.615850e-47 |
| Msa1305090 | Msa1398720 | 0.808806 | 2.583708e-50 | -8.615850e-47 |
| Msa1317340 | Msa1398720 | 0.800068 | 1.713858e-48 | -8.615850e-47 |
| Msa0370210 | Msa1398720 | 0.844394 | 7.767650e-59 | -8.615850e-47 |
| Msa0398630 | Msa1398720 | 0.823987 | 1.030273e-53 | -8.615850e-47 |
| Msa0449920 | Msa1398720 | 0.801516 | 8.677573e-49 | -8.615850e-47 |
| Msa0983700 | Msa1398720 | 0.810339 | 1.210958e-50 | -8.615850e-47 |
| Msa0983720 | Msa1398720 | 0.844427 | 7.610760e-59 | -8.615850e-47 |
| Msa1084630 | Msa1398720 | 0.800421 | 1.452513e-48 | -8.615850e-47 |
| Msa1086050 | Msa1398720 | 0.822298 | 2.552978e-53 | -8.615850e-47 |
| Msa1086070 | Msa1398720 | 0.853532 | 2.246120e-61 | -8.615850e-47 |
| Msa1086080 | Msa1398720 | 0.807839 | 4.154301e-50 | -8.615850e-47 |
| Msa1086090 | Msa1398720 | 0.804981 | 1.664144e-49 | -8.615850e-47 |
| Msa1086100 | Msa1398720 | 0.848584 | 5.585715e-60 | -8.615850e-47 |
| Msa1086140 | Msa1398720 | 0.839636 | 1.407833e-57 | -8.615850e-47 |
| Msa1086150 | Msa1398720 | 0.845911 | 3.022681e-59 | -8.615850e-47 |
| Msa1086180 | Msa1398720 | 0.852358 | 4.865027e-61 | -8.615850e-47 |
| Msa1086190 | Msa1398720 | 0.806125 | 9.575789e-50 | -8.615850e-47 |
| Msa1086200 | Msa1398720 | 0.816767 | 4.666479e-52 | -8.615850e-47 |
| Msa1086210 | Msa1398720 | 0.836345 | 9.878824e-57 | -8.615850e-47 |
| Msa1086250 | Msa1398720 | 0.816458 | 5.473447e-52 | -8.615850e-47 |
| Msa1086260 | Msa1398720 | 0.829973 | 3.813322e-55 | -8.615850e-47 |
| Msa1086270 | Msa1398720 | 0.835995 | 1.212645e-56 | -8.615850e-47 |
| Msa1086280 | Msa1398720 | 0.839349 | 1.670843e-57 | -8.615850e-47 |
| Msa1086300 | Msa1398720 | 0.825043 | 5.813106e-54 | -8.615850e-47 |
| Msa1086360 | Msa1398720 | 0.811284 | 7.561216e-51 | -8.615850e-47 |
| Msa1086380 | Msa1398720 | 0.853259 | 2.689097e-61 | -8.615850e-47 |
| Msa1086430 | Msa1398720 | 0.819205 | 1.312222e-52 | -8.615850e-47 |
| Msa1086450 | Msa1398720 | 0.847411 | 1.176096e-59 | -8.615850e-47 |
| Msa1086470 | Msa1398720 | 0.831535 | 1.580300e-55 | -8.615850e-47 |
| Msa1086660 | Msa1398720 | 0.832393 | 9.698920e-56 | -8.615850e-47 |
| Msa1086860 | Msa1398720 | 0.827361 | 1.632076e-54 | -8.615850e-47 |
| Msa1086880 | Msa1398720 | 0.851056 | 1.137592e-60 | -8.615850e-47 |
| Msa1086890 | Msa1398720 | 0.821564 | 3.775596e-53 | -8.615850e-47 |
| Msa1086900 | Msa1398720 | 0.810796 | 9.644731e-51 | -8.615850e-47 |
| Msa1086910 | Msa1398720 | 0.852666 | 3.974218e-61 | -8.615850e-47 |
| Msa0268170 | Msa1398720 | 0.848159 | 7.321592e-60 | -8.615850e-47 |
| Msa0268190 | Msa1398720 | 0.832007 | 1.208162e-55 | -8.615850e-47 |
| Msa0268370 | Msa1398720 | 0.822830 | 1.920549e-53 | -8.615850e-47 |
| Msa0268390 | Msa1398720 | 0.859677 | 3.504888e-63 | -8.615850e-47 |
| Msa0268400 | Msa1398720 | 0.839519 | 1.509448e-57 | -8.615850e-47 |
| Msa0268410 | Msa1398720 | 0.845684 | 3.484101e-59 | -8.615850e-47 |
| Msa0268430 | Msa1398720 | 0.821254 | 4.451669e-53 | -8.615850e-47 |
| Msa0268530 | Msa1398720 | 0.837257 | 5.784103e-57 | -8.615850e-47 |
| Msa0268550 | Msa1398720 | 0.851681 | 7.572744e-61 | -8.615850e-47 |
| Msa0268560 | Msa1398720 | 0.832316 | 1.013281e-55 | -8.615850e-47 |
| Msa0268570 | Msa1398720 | 0.825351 | 4.915387e-54 | -8.615850e-47 |
| Msa0268580 | Msa1398720 | 0.841894 | 3.602231e-58 | -8.615850e-47 |
| Msa0268630 | Msa1398720 | 0.839024 | 2.028384e-57 | -8.615850e-47 |
| Msa0268640 | Msa1398720 | 0.847965 | 8.281346e-60 | -8.615850e-47 |
| Msa0268720 | Msa1398720 | 0.848558 | 5.676613e-60 | -8.615850e-47 |
| Msa0268740 | Msa1398720 | 0.845750 | 3.341758e-59 | -8.615850e-47 |
| Msa0268750 | Msa1398720 | 0.818722 | 1.689616e-52 | -8.615850e-47 |
| Msa0268760 | Msa1398720 | 0.827830 | 1.259392e-54 | -8.615850e-47 |
| Msa0268830 | Msa1398720 | 0.835750 | 1.399467e-56 | -8.615850e-47 |
| Msa0268840 | Msa1398720 | 0.843786 | 1.131074e-58 | -8.615850e-47 |
| Msa0268860 | Msa1398720 | 0.824092 | 9.731305e-54 | -8.615850e-47 |
| Msa0268920 | Msa1398720 | 0.832767 | 7.834059e-56 | -8.615850e-47 |
| Msa0268940 | Msa1398720 | 0.857482 | 1.584135e-62 | -8.615850e-47 |
| Msa0268950 | Msa1398720 | 0.819806 | 9.569394e-53 | -8.615850e-47 |
| Msa0268960 | Msa1398720 | 0.826223 | 3.052608e-54 | -8.615850e-47 |
| Msa0269040 | Msa1398720 | 0.831440 | 1.667527e-55 | -8.615850e-47 |
| Msa0269050 | Msa1398720 | 0.847326 | 1.241657e-59 | -8.615850e-47 |
| Msa0269070 | Msa1398720 | 0.817729 | 2.835462e-52 | -8.615850e-47 |
| Msa0307490 | Msa1398720 | 0.815707 | 8.053930e-52 | -8.615850e-47 |
| Msa0344180 | Msa1398720 | 0.831968 | 1.235610e-55 | -8.615850e-47 |
| Msa0344190 | Msa1398720 | 0.833946 | 3.981874e-56 | -8.615850e-47 |
| Msa0344210 | Msa1398720 | 0.807895 | 4.041759e-50 | -8.615850e-47 |
| Msa0344280 | Msa1398720 | 0.831880 | 1.298628e-55 | -8.615850e-47 |
| Msa0344300 | Msa1398720 | 0.857056 | 2.117115e-62 | -8.615850e-47 |
| Msa0344310 | Msa1398720 | 0.823043 | 1.713015e-53 | -8.615850e-47 |
| Msa0344330 | Msa1398720 | 0.803945 | 2.736171e-49 | -8.615850e-47 |
| Msa1143120 | Msa1398720 | 0.832245 | 1.055530e-55 | -8.615850e-47 |
| Msa1143130 | Msa1398720 | 0.841538 | 4.473281e-58 | -8.615850e-47 |
| Msa1143160 | Msa1398720 | 0.838226 | 3.261079e-57 | -8.615850e-47 |
| Msa1143170 | Msa1398720 | 0.812018 | 5.234335e-51 | -8.615850e-47 |
| Msa1143180 | Msa1398720 | 0.810722 | 1.000707e-50 | -8.615850e-47 |
| Msa0483990 | Msa1398720 | 0.836804 | 7.551137e-57 | -8.615850e-47 |
| Msa0495270 | Msa1398720 | 0.816800 | 4.587392e-52 | -8.615850e-47 |
| Msa0516340 | Msa1398720 | 0.802480 | 5.499469e-49 | -8.615850e-47 |
| Msa0577140 | Msa1398720 | 0.816224 | 6.173503e-52 | -8.615850e-47 |
| Msa0577910 | Msa1398720 | 0.805492 | 1.300697e-49 | -8.615850e-47 |
| Msa0582510 | Msa1398720 | 0.847166 | 1.373014e-59 | -8.615850e-47 |
| Msa0582520 | Msa1398720 | 0.850147 | 2.048712e-60 | -8.615850e-47 |
| Msa0582540 | Msa1398720 | 0.809175 | 2.154895e-50 | -8.615850e-47 |
| Msa0582610 | Msa1398720 | 0.821179 | 4.633363e-53 | -8.615850e-47 |
| Msa0582630 | Msa1398720 | 0.855095 | 7.938480e-62 | -8.615850e-47 |
| Msa0582640 | Msa1398720 | 0.816606 | 5.072074e-52 | -8.615850e-47 |
| Msa0582650 | Msa1398720 | 0.817137 | 3.853960e-52 | -8.615850e-47 |
| Msa0582660 | Msa1398720 | 0.829726 | 4.381633e-55 | -8.615850e-47 |
| Msa0582690 | Msa1398720 | 0.833910 | 4.065341e-56 | -8.615850e-47 |
| Msa0582700 | Msa1398720 | 0.853902 | 1.757330e-61 | -8.615850e-47 |
| Msa0582720 | Msa1398720 | 0.847592 | 1.048958e-59 | -8.615850e-47 |
| Msa0582750 | Msa1398720 | 0.859190 | 4.908060e-63 | -8.615850e-47 |
| Msa0582760 | Msa1398720 | 0.833699 | 4.590786e-56 | -8.615850e-47 |
| Msa0582770 | Msa1398720 | 0.814427 | 1.549301e-51 | -8.615850e-47 |
| Msa0582780 | Msa1398720 | 0.844272 | 8.379838e-59 | -8.615850e-47 |
| Msa0582810 | Msa1398720 | 0.836769 | 7.706804e-57 | -8.615850e-47 |
| Msa0582820 | Msa1398720 | 0.839233 | 1.791265e-57 | -8.615850e-47 |
| Msa0582840 | Msa1398720 | 0.824177 | 9.294036e-54 | -8.615850e-47 |
| Msa0582890 | Msa1398720 | 0.819426 | 1.168575e-52 | -8.615850e-47 |
| Msa0582910 | Msa1398720 | 0.848134 | 7.436025e-60 | -8.615850e-47 |
| Msa0582920 | Msa1398720 | 0.818414 | 1.984348e-52 | -8.615850e-47 |
| Msa0582930 | Msa1398720 | 0.830962 | 2.184953e-55 | -8.615850e-47 |
| Msa0591370 | Msa1398720 | 0.822703 | 2.055595e-53 | -8.615850e-47 |
| Msa0591380 | Msa1398720 | 0.811189 | 7.928664e-51 | -8.615850e-47 |
| Msa0867640 | Msa1398720 | 0.851610 | 7.936381e-61 | -8.615850e-47 |
| Msa0867650 | Msa1398720 | 0.850364 | 1.781712e-60 | -8.615850e-47 |
| Msa0883880 | Msa1398720 | 0.810693 | 1.015395e-50 | -8.615850e-47 |
| Msa0924850 | Msa1398720 | 0.807326 | 5.339156e-50 | -8.615850e-47 |
| Msa0924870 | Msa1398720 | 0.843164 | 1.657536e-58 | -8.615850e-47 |
| Msa0924880 | Msa1398720 | 0.821745 | 3.428387e-53 | -8.615850e-47 |
| Msa0924890 | Msa1398720 | 0.804353 | 2.250388e-49 | -8.615850e-47 |
| Msa0924990 | Msa1398720 | 0.819231 | 1.294561e-52 | -8.615850e-47 |
| Msa0925040 | Msa1398720 | 0.853006 | 3.178282e-61 | -8.615850e-47 |
| Msa0931070 | Msa1398720 | 0.841976 | 3.427128e-58 | -8.615850e-47 |
| Msa0931080 | Msa1398720 | 0.850517 | 1.613451e-60 | -8.615850e-47 |
| Msa0931100 | Msa1398720 | 0.840173 | 1.019817e-57 | -8.615850e-47 |
| Msa0931130 | Msa1398720 | 0.839565 | 1.468624e-57 | -8.615850e-47 |
| Msa0931140 | Msa1398720 | 0.850663 | 1.467643e-60 | -8.615850e-47 |
| Msa0931160 | Msa1398720 | 0.817940 | 2.541107e-52 | -8.615850e-47 |
| Msa0931190 | Msa1398720 | 0.839071 | 1.973165e-57 | -8.615850e-47 |
| Msa0931210 | Msa1398720 | 0.852625 | 4.082555e-61 | -8.615850e-47 |
| Msa0931220 | Msa1398720 | 0.810002 | 1.431222e-50 | -8.615850e-47 |
| Msa0931230 | Msa1398720 | 0.810301 | 1.233894e-50 | -8.615850e-47 |
| Msa0931240 | Msa1398720 | 0.838909 | 2.173376e-57 | -8.615850e-47 |
| Msa0931260 | Msa1398720 | 0.828483 | 8.766770e-55 | -8.615850e-47 |
| Msa0931270 | Msa1398720 | 0.833417 | 5.398085e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398720 | MtrunA17_Chr7g0229301 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1398720 | MtrunA17_Chr6g0454441 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1398720 | MtrunA17_Chr4g0016451 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1398720 | MtrunA17_Chr6g0466281 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1398720 | MtrunA17_CPg0493311 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1398720 | MtrunA17_Chr7g0229661 | 84.080 | 201 | 13 | 1 | 1 | 201 | 1 | 182 | 1.89e-115 | 327 |
| Msa1398720 | MtrunA17_Chr4g0015291 | 97.436 | 156 | 4 | 0 | 1 | 156 | 1 | 156 | 3.32e-108 | 307 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398720 | ATCG00380.1 | 88.060 | 201 | 24 | 0 | 1 | 201 | 1 | 201 | 2.12e-126 | 355 |
Find 33 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATAATAGATAGTAAA+TGG | 0.189787 | tig0022279:-79473 | Msa1398720:CDS |
| GATTGACTAATCCTTTATAT+TGG | 0.284280 | tig0022279:+79493 | None:intergenic |
| CTTGATCCATTCCAATATAA+AGG | 0.291752 | tig0022279:-79504 | Msa1398720:CDS |
| CTTAAATACGTTCGTATCGC+TGG | 0.342652 | tig0022279:-79804 | Msa1398720:CDS |
| ACAATTACTTGAAATGCGTT+TGG | 0.359489 | tig0022279:-79748 | Msa1398720:CDS |
| TTTGAAAATTAATGAATTGC+TGG | 0.365999 | tig0022279:-79445 | Msa1398720:CDS |
| ATGGATTGGCAATTCTTCGC+GGG | 0.450528 | tig0022279:+79533 | None:intergenic |
| TACCAGGACTAACTAGTAAA+CGG | 0.463029 | tig0022279:-79947 | Msa1398720:CDS |
| TGAGGTTTGCAACGATAACT+TGG | 0.468099 | tig0022279:+79624 | None:intergenic |
| ACTAATCCTTTATATTGGAA+TGG | 0.475526 | tig0022279:+79498 | None:intergenic |
| GTCTGTGGTTAACTAATTGA+CGG | 0.477609 | tig0022279:+79679 | None:intergenic |
| TCAAATAATAGATAGTAAAT+GGG | 0.487910 | tig0022279:-79472 | Msa1398720:CDS |
| ATAATAGATAGTAAATGGGT+TGG | 0.504615 | tig0022279:-79468 | Msa1398720:CDS |
| CTAAGTTCGCTTCCAACTGT+AGG | 0.508663 | tig0022279:+79924 | None:intergenic |
| GGATCAAGAGTCAAATGGAT+TGG | 0.511159 | tig0022279:+79519 | None:intergenic |
| GGAAAAGCGAAAGGTTCAAC+CGG | 0.516182 | tig0022279:-79783 | Msa1398720:CDS |
| TCTGTGGTTAACTAATTGAC+GGG | 0.521261 | tig0022279:+79680 | None:intergenic |
| GGCCGTTTACTAGTTAGTCC+TGG | 0.527000 | tig0022279:+79945 | None:intergenic |
| AATGGATTGGCAATTCTTCG+CGG | 0.545268 | tig0022279:+79532 | None:intergenic |
| TCAAGATATTATTACAGCGA+AGG | 0.559737 | tig0022279:-79604 | Msa1398720:CDS |
| TTCGCTGTAATAATATCTTG+AGG | 0.560954 | tig0022279:+79606 | None:intergenic |
| TAATTGTAGTAAAACTTGAC+CGG | 0.568250 | tig0022279:+79764 | None:intergenic |
| ACTAGTAAACGGCCTACAGT+TGG | 0.568372 | tig0022279:-79936 | Msa1398720:CDS |
| CAAGATATTATTACAGCGAA+GGG | 0.569002 | tig0022279:-79603 | Msa1398720:CDS |
| TTAACTAATTGACGGGCTTG+AGG | 0.581554 | tig0022279:+79687 | None:intergenic |
| GGAATGGATCAAGAGTCAAA+TGG | 0.582974 | tig0022279:+79514 | None:intergenic |
| GATTGGCAATTCTTCGCGGG+GGG | 0.584547 | tig0022279:+79536 | None:intergenic |
| TGGATTGGCAATTCTTCGCG+GGG | 0.610754 | tig0022279:+79534 | None:intergenic |
| TGTTTATGTCACGTTACAGA+GGG | 0.632465 | tig0022279:-80004 | None:intergenic |
| GTGTTTATGTCACGTTACAG+AGG | 0.633128 | tig0022279:-80005 | None:intergenic |
| CGTATCGCTGGAAAAGCGAA+AGG | 0.633501 | tig0022279:-79792 | Msa1398720:CDS |
| CATTAACTAAAACATGTCTG+TGG | 0.663264 | tig0022279:+79664 | None:intergenic |
| GGATTGGCAATTCTTCGCGG+GGG | 0.681198 | tig0022279:+79535 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAATAATAGATAGTAAA+TGG | - | tig0022279:79942-79961 | Msa1398720:CDS | 15.0% |
| !! | TCAAATAATAGATAGTAAAT+GGG | - | tig0022279:79943-79962 | Msa1398720:CDS | 15.0% |
| !! | TTTGAAAATTAATGAATTGC+TGG | - | tig0022279:79970-79989 | Msa1398720:CDS | 20.0% |
| !! | CAAAAATTGCGTTTTCATTA+TGG | - | tig0022279:79569-79588 | Msa1398720:CDS | 25.0% |
| ! | TAATTGTAGTAAAACTTGAC+CGG | + | tig0022279:79654-79673 | None:intergenic | 25.0% |
| !!! | GATAACATACTTTTTCGATT+GGG | - | tig0022279:79689-79708 | Msa1398720:CDS | 25.0% |
| ! | ACTAATCCTTTATATTGGAA+TGG | + | tig0022279:79920-79939 | None:intergenic | 25.0% |
| ! | GATTGACTAATCCTTTATAT+TGG | + | tig0022279:79925-79944 | None:intergenic | 25.0% |
| ! | ATAATAGATAGTAAATGGGT+TGG | - | tig0022279:79947-79966 | Msa1398720:CDS | 25.0% |
| TTTCAAAAAAATACGTCGTC+TGG | - | tig0022279:79439-79458 | Msa1398720:CDS | 30.0% | |
| TTCAAAAAAATACGTCGTCT+GGG | - | tig0022279:79440-79459 | Msa1398720:CDS | 30.0% | |
| ACAATTACTTGAAATGCGTT+TGG | - | tig0022279:79667-79686 | Msa1398720:CDS | 30.0% | |
| !!! | GGATAACATACTTTTTCGAT+TGG | - | tig0022279:79688-79707 | Msa1398720:CDS | 30.0% |
| CATTAACTAAAACATGTCTG+TGG | + | tig0022279:79754-79773 | None:intergenic | 30.0% | |
| !!! | CACAGACATGTTTTAGTTAA+TGG | - | tig0022279:79752-79771 | Msa1398720:CDS | 30.0% |
| TTCGCTGTAATAATATCTTG+AGG | + | tig0022279:79812-79831 | None:intergenic | 30.0% | |
| TCAAGATATTATTACAGCGA+AGG | - | tig0022279:79811-79830 | Msa1398720:CDS | 30.0% | |
| CAAGATATTATTACAGCGAA+GGG | - | tig0022279:79812-79831 | Msa1398720:CDS | 30.0% | |
| CTTGATCCATTCCAATATAA+AGG | - | tig0022279:79911-79930 | Msa1398720:CDS | 30.0% | |
| !!! | CGACGTATTTTTTTGAAACG+AGG | + | tig0022279:79437-79456 | None:intergenic | 35.0% |
| TCAAAAAAATACGTCGTCTG+GGG | - | tig0022279:79441-79460 | Msa1398720:CDS | 35.0% | |
| TACCAGGACTAACTAGTAAA+CGG | - | tig0022279:79468-79487 | Msa1398720:CDS | 35.0% | |
| !!! | CATACTTTTTCGATTGGGTA+TGG | - | tig0022279:79694-79713 | Msa1398720:CDS | 35.0% |
| TCTGTGGTTAACTAATTGAC+GGG | + | tig0022279:79738-79757 | None:intergenic | 35.0% | |
| GTCTGTGGTTAACTAATTGA+CGG | + | tig0022279:79739-79758 | None:intergenic | 35.0% | |
| CAAAAAAATACGTCGTCTGG+GGG | - | tig0022279:79442-79461 | Msa1398720:CDS | 40.0% | |
| !!! | ATTTTTTACTCGAGCGCGAT+TGG | + | tig0022279:79520-79539 | None:intergenic | 40.0% |
| CTTAAATACGTTCGTATCGC+TGG | - | tig0022279:79611-79630 | Msa1398720:CDS | 40.0% | |
| !! | TTAACTAATTGACGGGCTTG+AGG | + | tig0022279:79731-79750 | None:intergenic | 40.0% |
| TGAGGTTTGCAACGATAACT+TGG | + | tig0022279:79794-79813 | None:intergenic | 40.0% | |
| !! | AATGGATTGGCAATTCTTCG+CGG | + | tig0022279:79886-79905 | None:intergenic | 40.0% |
| GGATCAAGAGTCAAATGGAT+TGG | + | tig0022279:79899-79918 | None:intergenic | 40.0% | |
| GGAATGGATCAAGAGTCAAA+TGG | + | tig0022279:79904-79923 | None:intergenic | 40.0% | |
| ACTAGTAAACGGCCTACAGT+TGG | - | tig0022279:79479-79498 | Msa1398720:CDS | 45.0% | |
| CTAAGTTCGCTTCCAACTGT+AGG | + | tig0022279:79494-79513 | None:intergenic | 45.0% | |
| GGAAAAGCGAAAGGTTCAAC+CGG | - | tig0022279:79632-79651 | Msa1398720:CDS | 45.0% | |
| !! | ATGGATTGGCAATTCTTCGC+GGG | + | tig0022279:79885-79904 | None:intergenic | 45.0% |
| GGCCGTTTACTAGTTAGTCC+TGG | + | tig0022279:79473-79492 | None:intergenic | 50.0% | |
| CGTATCGCTGGAAAAGCGAA+AGG | - | tig0022279:79623-79642 | Msa1398720:CDS | 50.0% | |
| !! | TGGATTGGCAATTCTTCGCG+GGG | + | tig0022279:79884-79903 | None:intergenic | 50.0% |
| GATTGGCAATTCTTCGCGGG+GGG | + | tig0022279:79882-79901 | None:intergenic | 55.0% | |
| ! | GGATTGGCAATTCTTCGCGG+GGG | + | tig0022279:79883-79902 | None:intergenic | 55.0% |
| CGTCGTCTGGGGGCTTTACC+AGG | - | tig0022279:79452-79471 | Msa1398720:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022279 | gene | 79416 | 80021 | 79416 | ID=Msa1398720;Name=Msa1398720 |
| tig0022279 | mRNA | 79416 | 80021 | 79416 | ID=Msa1398720-mRNA-1;Parent=Msa1398720;Name=Msa1398720-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|201 |
| tig0022279 | exon | 79416 | 80021 | 79416 | ID=Msa1398720-mRNA-1:exon:16776;Parent=Msa1398720-mRNA-1 |
| tig0022279 | CDS | 79416 | 80021 | 79416 | ID=Msa1398720-mRNA-1:cds;Parent=Msa1398720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
