AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1394130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1394130 MtrunA17_CPg0492851 99.692 325 1 0 65 389 1 325 0.0 659
Msa1394130 MtrunA17_Chr4g0015731 99.692 325 1 0 65 389 1 325 0.0 659
Msa1394130 MtrunA17_Chr4g0016821 99.692 325 1 0 65 389 1 325 0.0 659
Msa1394130 MtrunA17_Chr4g0016981 83.186 113 4 1 108 220 42 139 2.08e-58 187
Msa1394130 MtrunA17_Chr4g0016991 95.385 65 3 0 325 389 1 65 4.08e-36 126
Msa1394130 MtrunA17_Chr5g0403621 96.667 60 2 0 1 60 86 145 4.59e-35 127
Msa1394130 MtrunA17_Chr4g0016811 98.333 60 1 0 1 60 95 154 2.12e-34 127
Msa1394130 MtrunA17_CPg0492871 98.333 60 1 0 1 60 86 145 2.37e-34 127
Msa1394130 MtrunA17_Chr4g0015721 98.333 60 1 0 1 60 86 145 2.37e-34 127
Msa1394130 MtrunA17_Chr3g0141111 94.737 57 3 0 1 57 15 71 3.31e-33 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1394130 ATCG00540.1 90.625 320 30 0 70 389 1 320 0.0 595
Msa1394130 ATCG00530.1 67.241 58 19 0 3 60 88 145 2.46e-18 83.6

Find 87 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGGCATCTATTATTT+TGG 0.108321 tig0021785:-58171 Msa1394130:CDS
TTCTAAGTGGTTATTCTATT+AGG 0.170612 tig0021785:-59588 Msa1394130:CDS
ACAAGGTCTGTTGTTCTTCT+TGG 0.210830 tig0021785:-58186 Msa1394130:CDS
TCTAAGTGGTTATTCTATTA+GGG 0.213858 tig0021785:-59587 Msa1394130:CDS
CTTGTGGTAGGCCCCGTTCC+TGG 0.214230 tig0021785:-58602 Msa1394130:CDS
ACATTAGGATTACTCGTTAA+TGG 0.226644 tig0021785:+58263 None:intergenic
TAGAATAACCACTTAGAATA+AGG 0.296044 tig0021785:+59593 None:intergenic
CTACAGGCTTATTAGCTAAA+TGG 0.299374 tig0021785:+58867 None:intergenic
CTATATACGTAGGCGGGAAT+AGG 0.308836 tig0021785:-58499 Msa1394130:CDS
CTATATTTCTTCCCAGGAAC+GGG 0.314257 tig0021785:+58590 None:intergenic
AATCCTAATGTGGGTGGATT+TGG 0.318985 tig0021785:-58251 Msa1394130:CDS
AACTCATTATTCTTAACTCT+TGG 0.323937 tig0021785:-59555 Msa1394130:CDS
AAAATTATACGAAAAGAAAA+AGG 0.339453 tig0021785:-58398 Msa1394130:CDS
TATATACGTAGGCGGGAATA+GGG 0.340058 tig0021785:-58498 Msa1394130:CDS
CTATTCCCGCCTACGTATAT+AGG 0.341092 tig0021785:+58500 None:intergenic
GTTAAACAAGTTCTTGCTAA+TGG 0.346567 tig0021785:-58770 Msa1394130:CDS
GGTTGTTCGTCTCTATCAAT+TGG 0.367131 tig0021785:+59665 None:intergenic
CCCTCTGAAACAAGAAGTTC+TGG 0.373836 tig0021785:+58308 None:intergenic
TAATGTGGGTGGATTTGGTC+AGG 0.386047 tig0021785:-58246 Msa1394130:CDS
TGACCAAATCCACCCACATT+AGG 0.412065 tig0021785:+58248 None:intergenic
TGTTTAACTTGCATATCATA+AGG 0.412925 tig0021785:+58785 None:intergenic
ACTCATTATTCTTAACTCTT+GGG 0.414290 tig0021785:-59554 Msa1394130:CDS
TCTCTCTTAGTAGCGGGATC+TGG 0.425976 tig0021785:+58542 None:intergenic
AATGGGATATGCATTTGAAA+TGG 0.432612 tig0021785:+58952 None:intergenic
GTTTATAATGCTACAGCAAC+AGG 0.436701 tig0021785:-58431 Msa1394130:CDS
GATCATGAGCAATACGGAAA+TGG 0.442149 tig0021785:+58994 None:intergenic
AAATCGTATGGATACGGTCT+TGG 0.446811 tig0021785:+59644 None:intergenic
TTGTGGTAGGCCCCGTTCCT+GGG 0.450790 tig0021785:-58601 Msa1394130:CDS
TTATTACTCTTGCTCCCGTC+GGG 0.465288 tig0021785:+58458 None:intergenic
ATATGTTTCCTTATTCTAAG+TGG 0.468100 tig0021785:-59601 Msa1394130:CDS
TACAGAAATGCAAAATCGTA+TGG 0.481344 tig0021785:+59632 None:intergenic
ACTGCTTCAAATACAGTATC+GGG 0.488265 tig0021785:+58818 None:intergenic
AAAAGCATTTCTAGTTTGCA+TGG 0.489913 tig0021785:+59045 None:intergenic
TGGATACGAAATAACGATAG+TGG 0.491690 tig0021785:-58375 Msa1394130:CDS
AACTGCTTCAAATACAGTAT+CGG 0.494328 tig0021785:+58817 None:intergenic
ATTTCACTATATTTCTTCCC+AGG 0.497196 tig0021785:+58584 None:intergenic
ATGGGATATGCATTTGAAAT+GGG 0.502392 tig0021785:+58953 None:intergenic
GAGCAATACGGAAATGGATC+GGG 0.505456 tig0021785:+59000 None:intergenic
CAAGATCCGTTACGTGTACA+AGG 0.506414 tig0021785:-58203 Msa1394130:CDS
TATATAGATCATGAGCAATA+CGG 0.512581 tig0021785:+58988 None:intergenic
ATCCGCCCGGTAGCTTCTCT+CGG 0.516777 tig0021785:+58905 None:intergenic
AATATCCTATATACGTAGGC+GGG 0.517081 tig0021785:-58505 Msa1394130:CDS
TAATAAGCCTGTAGATATTG+AGG 0.521759 tig0021785:-58858 Msa1394130:CDS
ATGTGGGTGGATTTGGTCAG+GGG 0.523100 tig0021785:-58244 Msa1394130:CDS
TGTGGAACCTCAATATCTAC+AGG 0.524236 tig0021785:+58851 None:intergenic
ATTATTACTCTTGCTCCCGT+CGG 0.527873 tig0021785:+58457 None:intergenic
CCAGAACTTCTTGTTTCAGA+GGG 0.530598 tig0021785:-58308 Msa1394130:CDS
ACTATATTTCTTCCCAGGAA+CGG 0.533921 tig0021785:+58589 None:intergenic
AATGTGGGTGGATTTGGTCA+GGG 0.534197 tig0021785:-58245 Msa1394130:CDS
ATCTCGGGCGAAATACGATC+AGG 0.534200 tig0021785:+58683 None:intergenic
CTAAGTGGTTATTCTATTAG+GGG 0.545375 tig0021785:-59586 Msa1394130:CDS
GAAACAAGAAGTTCTGGTCC+TGG 0.545439 tig0021785:+58314 None:intergenic
GCGGGATCTGGAGAAAGAAT+AGG 0.547213 tig0021785:+58554 None:intergenic
GTAGGCGGGAATAGGGGAAG+GGG 0.547797 tig0021785:-58491 Msa1394130:CDS
AATGCAAAATCGTATGGATA+CGG 0.548969 tig0021785:+59638 None:intergenic
GTGAACATCTCTCTTAGTAG+CGG 0.549431 tig0021785:+58535 None:intergenic
ACCAGAACTTCTTGTTTCAG+AGG 0.553828 tig0021785:-58309 Msa1394130:CDS
AAAATCCGAGAGAAGCTACC+GGG 0.554646 tig0021785:-58910 Msa1394130:CDS
TGAGCAATACGGAAATGGAT+CGG 0.555873 tig0021785:+58999 None:intergenic
GTGATTGATATTATACCGCC+AGG 0.566218 tig0021785:-58332 Msa1394130:CDS
TGAACATCTCTCTTAGTAGC+GGG 0.566429 tig0021785:+58536 None:intergenic
ATTAACGAGTAATCCTAATG+TGG 0.573726 tig0021785:-58261 Msa1394130:CDS
GGGGCCAATTCAAAACCCTC+TGG 0.574508 tig0021785:+58707 None:intergenic
GGGGTCAGATTTATCCCGAC+GGG 0.575656 tig0021785:-58472 Msa1394130:CDS
ACGTAGGCGGGAATAGGGGA+AGG 0.589088 tig0021785:-58493 Msa1394130:CDS
ACGATAGTGGATGCATCGGA+TGG 0.592008 tig0021785:-58362 Msa1394130:CDS
ATCTGGAGAAAGAATAGGAA+AGG 0.599901 tig0021785:+58559 None:intergenic
AACAGACCTTGTACACGTAA+CGG 0.600684 tig0021785:+58197 None:intergenic
GAAAATCCGAGAGAAGCTAC+CGG 0.606144 tig0021785:-58911 Msa1394130:CDS
TGTGGGTGGATTTGGTCAGG+GGG 0.611690 tig0021785:-58243 Msa1394130:CDS
AAATATCCTATATACGTAGG+CGG 0.616381 tig0021785:-58506 Msa1394130:CDS
TTAAAATATCCTATATACGT+AGG 0.623794 tig0021785:-58509 Msa1394130:CDS
ACGAGTAATCCTAATGTGGG+TGG 0.626177 tig0021785:-58257 Msa1394130:CDS
TCGGGCGAAATACGATCAGG+AGG 0.629985 tig0021785:+58686 None:intergenic
ATTAGCACATACAATCCGCC+CGG 0.633238 tig0021785:+58892 None:intergenic
AATAACGATAGTGGATGCAT+CGG 0.634066 tig0021785:-58366 Msa1394130:CDS
TATATTTCTTCCCAGGAACG+GGG 0.637585 tig0021785:+58591 None:intergenic
ATATACGTAGGCGGGAATAG+GGG 0.641009 tig0021785:-58497 Msa1394130:CDS
CGTAGGCGGGAATAGGGGAA+GGG 0.650670 tig0021785:-58492 Msa1394130:CDS
TTAACGAGTAATCCTAATGT+GGG 0.652400 tig0021785:-58260 Msa1394130:CDS
AGATATTGAGGTTCCACAAG+CGG 0.653295 tig0021785:-58846 Msa1394130:CDS
CGGGCGAAATACGATCAGGA+GGG 0.656521 tig0021785:+58687 None:intergenic
GGGCGAAATACGATCAGGAG+GGG 0.658846 tig0021785:+58688 None:intergenic
AGGGGTCAGATTTATCCCGA+CGG 0.672516 tig0021785:-58473 Msa1394130:CDS
GTATCGGGAAGTACCGCTTG+TGG 0.687149 tig0021785:+58833 None:intergenic
ACAAGAAGTTCTGGTCCTGG+CGG 0.692543 tig0021785:+58317 None:intergenic
ATCCGAGAGAAGCTACCGGG+CGG 0.767274 tig0021785:-58907 Msa1394130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATAAATCAGTTAATAAA+AGG + tig0021785:58312-58331 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - tig0021785:58313-58332 Msa1394130:CDS 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - tig0021785:58449-58468 Msa1394130:CDS 15.0%
!! AAAATTTCTACAATAAGATT+AGG + tig0021785:58709-58728 None:intergenic 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG + tig0021785:59174-59193 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG - tig0021785:59393-59412 Msa1394130:intron 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG - tig0021785:59662-59681 Msa1394130:CDS 15.0%
!! TACATAAATCAGTTAATAAA+AGG + tig0021785:58312-58331 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - tig0021785:58313-58332 Msa1394130:CDS 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - tig0021785:58449-58468 Msa1394130:CDS 15.0%
!! AAAATTTCTACAATAAGATT+AGG + tig0021785:58709-58728 None:intergenic 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG + tig0021785:59174-59193 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG - tig0021785:59393-59412 Msa1394130:intron 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG - tig0021785:59662-59681 Msa1394130:CDS 15.0%
!!! AAAATTGTATCTAAAATGAC+TGG + tig0021785:58442-58461 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + tig0021785:58550-58569 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG + tig0021785:58641-58660 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG - tig0021785:58710-58729 Msa1394130:CDS 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG + tig0021785:59127-59146 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG + tig0021785:59175-59194 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG - tig0021785:59173-59192 Msa1394130:intron 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG - tig0021785:59177-59196 Msa1394130:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG - tig0021785:59282-59301 Msa1394130:intron 20.0%
!!! AAAATTGTATCTAAAATGAC+TGG + tig0021785:58442-58461 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + tig0021785:58550-58569 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG + tig0021785:58641-58660 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG - tig0021785:58710-58729 Msa1394130:CDS 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG + tig0021785:59127-59146 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG + tig0021785:59175-59194 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG - tig0021785:59173-59192 Msa1394130:intron 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG - tig0021785:59177-59196 Msa1394130:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG - tig0021785:59282-59301 Msa1394130:intron 20.0%
! ATATGTTTCCTTATTCTAAG+TGG - tig0021785:58190-58209 Msa1394130:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG + tig0021785:58201-58220 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - tig0021785:58203-58222 Msa1394130:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - tig0021785:58204-58223 Msa1394130:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG - tig0021785:58236-58255 Msa1394130:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG - tig0021785:58237-58256 Msa1394130:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - tig0021785:58400-58419 Msa1394130:CDS 25.0%
! GAGATACACGATTTAAATAA+CGG + tig0021785:58480-58499 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - tig0021785:58659-58678 Msa1394130:CDS 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - tig0021785:58664-58683 Msa1394130:CDS 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - tig0021785:58665-58684 Msa1394130:CDS 25.0%
! TTTCTACAATAAGATTAGGT+AGG + tig0021785:58705-58724 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - tig0021785:58722-58741 Msa1394130:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - tig0021785:58752-58771 Msa1394130:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - tig0021785:58759-58778 Msa1394130:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG + tig0021785:58806-58825 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + tig0021785:59009-59028 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - tig0021785:59031-59050 Msa1394130:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG + tig0021785:59126-59145 None:intergenic 25.0%
! ATTATACGAAAAGAAAAAGG+TGG - tig0021785:59396-59415 Msa1394130:intron 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG - tig0021785:59635-59654 Msa1394130:CDS 25.0%
! ATATGTTTCCTTATTCTAAG+TGG - tig0021785:58190-58209 Msa1394130:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG + tig0021785:58201-58220 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - tig0021785:58203-58222 Msa1394130:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - tig0021785:58204-58223 Msa1394130:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG - tig0021785:58236-58255 Msa1394130:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG - tig0021785:58237-58256 Msa1394130:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - tig0021785:58400-58419 Msa1394130:CDS 25.0%
! GAGATACACGATTTAAATAA+CGG + tig0021785:58480-58499 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - tig0021785:58659-58678 Msa1394130:CDS 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - tig0021785:58664-58683 Msa1394130:CDS 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - tig0021785:58665-58684 Msa1394130:CDS 25.0%
! TTTCTACAATAAGATTAGGT+AGG + tig0021785:58705-58724 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - tig0021785:58722-58741 Msa1394130:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - tig0021785:58752-58771 Msa1394130:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - tig0021785:58759-58778 Msa1394130:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG + tig0021785:58806-58825 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + tig0021785:59009-59028 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - tig0021785:59031-59050 Msa1394130:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG + tig0021785:59126-59145 None:intergenic 25.0%
! ATTATACGAAAAGAAAAAGG+TGG - tig0021785:59396-59415 Msa1394130:intron 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG - tig0021785:59635-59654 Msa1394130:CDS 25.0%
AATGCAAAATCGTATGGATA+CGG + tig0021785:58156-58175 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG + tig0021785:58162-58181 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG - tig0021785:58205-58224 Msa1394130:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG + tig0021785:58434-58453 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG + tig0021785:58502-58521 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG - tig0021785:58628-58647 Msa1394130:CDS 30.0%
AATAAGATTAGGTAGGTTAC+TGG + tig0021785:58698-58717 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + tig0021785:58749-58768 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + tig0021785:58841-58860 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + tig0021785:58842-58861 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - tig0021785:58933-58952 Msa1394130:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG + tig0021785:58977-58996 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - tig0021785:59021-59040 Msa1394130:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - tig0021785:59030-59049 Msa1394130:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - tig0021785:59032-59051 Msa1394130:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG - tig0021785:59123-59142 Msa1394130:intron 30.0%
ATTTCACTATATTTCTTCCC+AGG + tig0021785:59210-59229 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG - tig0021785:59285-59304 Msa1394130:intron 30.0%
ACATTAGGATTACTCGTTAA+TGG + tig0021785:59531-59550 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG - tig0021785:59530-59549 Msa1394130:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG - tig0021785:59531-59550 Msa1394130:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG - tig0021785:59620-59639 Msa1394130:CDS 30.0%
AATGCAAAATCGTATGGATA+CGG + tig0021785:58156-58175 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG + tig0021785:58162-58181 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG - tig0021785:58205-58224 Msa1394130:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG + tig0021785:58434-58453 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG + tig0021785:58502-58521 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG - tig0021785:58628-58647 Msa1394130:CDS 30.0%
AATAAGATTAGGTAGGTTAC+TGG + tig0021785:58698-58717 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + tig0021785:58749-58768 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + tig0021785:58841-58860 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + tig0021785:58842-58861 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - tig0021785:58933-58952 Msa1394130:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG + tig0021785:58977-58996 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - tig0021785:59021-59040 Msa1394130:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - tig0021785:59030-59049 Msa1394130:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - tig0021785:59032-59051 Msa1394130:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG - tig0021785:59123-59142 Msa1394130:intron 30.0%
ATTTCACTATATTTCTTCCC+AGG + tig0021785:59210-59229 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG - tig0021785:59285-59304 Msa1394130:intron 30.0%
ACATTAGGATTACTCGTTAA+TGG + tig0021785:59531-59550 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG - tig0021785:59530-59549 Msa1394130:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG - tig0021785:59531-59550 Msa1394130:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG - tig0021785:59620-59639 Msa1394130:CDS 30.0%
ATAGGATTCCATTCAACTCA+TGG - tig0021785:58331-58350 Msa1394130:CDS 35.0%
ATTCCATTCAACTCATGGTT+GGG - tig0021785:58336-58355 Msa1394130:CDS 35.0%
ATGGTTGGGAACTAATGATT+GGG - tig0021785:58350-58369 Msa1394130:CDS 35.0%
! GGGTCTGTCTATAAAGATTT+TGG - tig0021785:58370-58389 Msa1394130:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - tig0021785:58852-58871 Msa1394130:CDS 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - tig0021785:58853-58872 Msa1394130:CDS 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + tig0021785:58859-58878 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + tig0021785:58860-58879 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + tig0021785:58927-58946 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG + tig0021785:58976-58995 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - tig0021785:59045-59064 Msa1394130:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG - tig0021785:59068-59087 Msa1394130:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG - tig0021785:59069-59088 Msa1394130:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG - tig0021785:59080-59099 Msa1394130:intron 35.0%
ACTATATTTCTTCCCAGGAA+CGG + tig0021785:59205-59224 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG + tig0021785:59235-59254 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG - tig0021785:59286-59305 Msa1394130:intron 35.0%
GTTTATAATGCTACAGCAAC+AGG - tig0021785:59360-59379 Msa1394130:intron 35.0%
TGGATACGAAATAACGATAG+TGG - tig0021785:59416-59435 Msa1394130:intron 35.0%
!! AATAACGATAGTGGATGCAT+CGG - tig0021785:59425-59444 Msa1394130:intron 35.0%
ATAGGATTCCATTCAACTCA+TGG - tig0021785:58331-58350 Msa1394130:CDS 35.0%
ATTCCATTCAACTCATGGTT+GGG - tig0021785:58336-58355 Msa1394130:CDS 35.0%
ATGGTTGGGAACTAATGATT+GGG - tig0021785:58350-58369 Msa1394130:CDS 35.0%
! GGGTCTGTCTATAAAGATTT+TGG - tig0021785:58370-58389 Msa1394130:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - tig0021785:58852-58871 Msa1394130:CDS 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - tig0021785:58853-58872 Msa1394130:CDS 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + tig0021785:58859-58878 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + tig0021785:58860-58879 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + tig0021785:58927-58946 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG + tig0021785:58976-58995 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - tig0021785:59045-59064 Msa1394130:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG - tig0021785:59068-59087 Msa1394130:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG - tig0021785:59069-59088 Msa1394130:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG - tig0021785:59080-59099 Msa1394130:intron 35.0%
ACTATATTTCTTCCCAGGAA+CGG + tig0021785:59205-59224 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG + tig0021785:59235-59254 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG - tig0021785:59286-59305 Msa1394130:intron 35.0%
GTTTATAATGCTACAGCAAC+AGG - tig0021785:59360-59379 Msa1394130:intron 35.0%
TGGATACGAAATAACGATAG+TGG - tig0021785:59416-59435 Msa1394130:intron 35.0%
!! AATAACGATAGTGGATGCAT+CGG - tig0021785:59425-59444 Msa1394130:intron 35.0%
GGTTGTTCGTCTCTATCAAT+TGG + tig0021785:58129-58148 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG + tig0021785:58150-58169 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - tig0021785:58335-58354 Msa1394130:CDS 40.0%
CATGGTTGGGAACTAATGAT+TGG - tig0021785:58349-58368 Msa1394130:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG + tig0021785:58795-58814 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG + tig0021785:58800-58819 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + tig0021785:58943-58962 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG - tig0021785:58945-58964 Msa1394130:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG + tig0021785:59203-59222 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG + tig0021785:59204-59223 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG + tig0021785:59258-59277 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG + tig0021785:59259-59278 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG - tig0021785:59293-59312 Msa1394130:intron 40.0%
ATTATTACTCTTGCTCCCGT+CGG + tig0021785:59337-59356 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG - tig0021785:59459-59478 Msa1394130:intron 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG - tig0021785:59482-59501 Msa1394130:intron 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG - tig0021785:59483-59502 Msa1394130:intron 40.0%
! AATCCTAATGTGGGTGGATT+TGG - tig0021785:59540-59559 Msa1394130:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG + tig0021785:59597-59616 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG - tig0021785:59605-59624 Msa1394130:CDS 40.0%
GGTTGTTCGTCTCTATCAAT+TGG + tig0021785:58129-58148 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG + tig0021785:58150-58169 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - tig0021785:58335-58354 Msa1394130:CDS 40.0%
CATGGTTGGGAACTAATGAT+TGG - tig0021785:58349-58368 Msa1394130:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG + tig0021785:58795-58814 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG + tig0021785:58800-58819 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + tig0021785:58943-58962 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG - tig0021785:58945-58964 Msa1394130:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG + tig0021785:59203-59222 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG + tig0021785:59204-59223 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG + tig0021785:59258-59277 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG + tig0021785:59259-59278 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG - tig0021785:59293-59312 Msa1394130:intron 40.0%
ATTATTACTCTTGCTCCCGT+CGG + tig0021785:59337-59356 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG - tig0021785:59459-59478 Msa1394130:intron 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG - tig0021785:59482-59501 Msa1394130:intron 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG - tig0021785:59483-59502 Msa1394130:intron 40.0%
! AATCCTAATGTGGGTGGATT+TGG - tig0021785:59540-59559 Msa1394130:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG + tig0021785:59597-59616 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG - tig0021785:59605-59624 Msa1394130:CDS 40.0%
! GTTCCCAACCATGAGTTGAA+TGG + tig0021785:58342-58361 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG + tig0021785:58794-58813 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - tig0021785:58880-58899 Msa1394130:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG - tig0021785:58881-58900 Msa1394130:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG + tig0021785:58902-58921 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG + tig0021785:59294-59313 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG - tig0021785:59292-59311 Msa1394130:intron 45.0%
ATATACGTAGGCGGGAATAG+GGG - tig0021785:59294-59313 Msa1394130:intron 45.0%
TTATTACTCTTGCTCCCGTC+GGG + tig0021785:59336-59355 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG + tig0021785:59480-59499 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG + tig0021785:59486-59505 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG - tig0021785:59534-59553 Msa1394130:CDS 45.0%
TGACCAAATCCACCCACATT+AGG + tig0021785:59546-59565 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG - tig0021785:59545-59564 Msa1394130:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG - tig0021785:59546-59565 Msa1394130:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG - tig0021785:59588-59607 Msa1394130:CDS 45.0%
! GTTCCCAACCATGAGTTGAA+TGG + tig0021785:58342-58361 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG + tig0021785:58794-58813 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - tig0021785:58880-58899 Msa1394130:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG - tig0021785:58881-58900 Msa1394130:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG + tig0021785:58902-58921 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG + tig0021785:59294-59313 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG - tig0021785:59292-59311 Msa1394130:intron 45.0%
ATATACGTAGGCGGGAATAG+GGG - tig0021785:59294-59313 Msa1394130:intron 45.0%
TTATTACTCTTGCTCCCGTC+GGG + tig0021785:59336-59355 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG + tig0021785:59480-59499 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG + tig0021785:59486-59505 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG - tig0021785:59534-59553 Msa1394130:CDS 45.0%
TGACCAAATCCACCCACATT+AGG + tig0021785:59546-59565 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG - tig0021785:59545-59564 Msa1394130:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG - tig0021785:59546-59565 Msa1394130:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG - tig0021785:59588-59607 Msa1394130:CDS 45.0%
!!! AAAAAAACAAATTTTATAAT+TGG + tig0021785:58558-58577 None:intergenic 5.0%
!!! AAAAAAACAAATTTTATAAT+TGG + tig0021785:58558-58577 None:intergenic 5.0%
ATCTCGGGCGAAATACGATC+AGG + tig0021785:59111-59130 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG + tig0021785:59240-59259 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG + tig0021785:59252-59271 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG - tig0021785:59318-59337 Msa1394130:intron 50.0%
!! ACGATAGTGGATGCATCGGA+TGG - tig0021785:59429-59448 Msa1394130:intron 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG + tig0021785:59477-59496 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG - tig0021785:59547-59566 Msa1394130:CDS 50.0%
ATCTCGGGCGAAATACGATC+AGG + tig0021785:59111-59130 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG + tig0021785:59240-59259 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG + tig0021785:59252-59271 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG - tig0021785:59318-59337 Msa1394130:intron 50.0%
!! ACGATAGTGGATGCATCGGA+TGG - tig0021785:59429-59448 Msa1394130:intron 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG + tig0021785:59477-59496 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG - tig0021785:59547-59566 Msa1394130:CDS 50.0%
!! GTATCGGGAAGTACCGCTTG+TGG + tig0021785:58961-58980 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG + tig0021785:59087-59106 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG + tig0021785:59106-59125 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG + tig0021785:59107-59126 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG + tig0021785:59108-59127 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG - tig0021785:59319-59338 Msa1394130:intron 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG - tig0021785:59548-59567 Msa1394130:CDS 55.0%
!! GTATCGGGAAGTACCGCTTG+TGG + tig0021785:58961-58980 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG + tig0021785:59087-59106 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG + tig0021785:59106-59125 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG + tig0021785:59107-59126 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG + tig0021785:59108-59127 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG - tig0021785:59319-59338 Msa1394130:intron 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG - tig0021785:59548-59567 Msa1394130:CDS 55.0%
ATCCGAGAGAAGCTACCGGG+CGG - tig0021785:58884-58903 Msa1394130:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + tig0021785:58889-58908 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG - tig0021785:59190-59209 Msa1394130:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG - tig0021785:59298-59317 Msa1394130:intron 60.0%
CGTAGGCGGGAATAGGGGAA+GGG - tig0021785:59299-59318 Msa1394130:intron 60.0%
GTAGGCGGGAATAGGGGAAG+GGG - tig0021785:59300-59319 Msa1394130:intron 60.0%
ATCCGAGAGAAGCTACCGGG+CGG - tig0021785:58884-58903 Msa1394130:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + tig0021785:58889-58908 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG - tig0021785:59190-59209 Msa1394130:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG - tig0021785:59298-59317 Msa1394130:intron 60.0%
CGTAGGCGGGAATAGGGGAA+GGG - tig0021785:59299-59318 Msa1394130:intron 60.0%
GTAGGCGGGAATAGGGGAAG+GGG - tig0021785:59300-59319 Msa1394130:intron 60.0%
CTTGTGGTAGGCCCCGTTCC+TGG - tig0021785:59189-59208 Msa1394130:intron 65.0%
CTTGTGGTAGGCCCCGTTCC+TGG - tig0021785:59189-59208 Msa1394130:intron 65.0%
Chromosome Type Strat End Strand Name
tig0021785 gene 58103 59710 58103 ID=Msa1394130;Name=Msa1394130
tig0021785 mRNA 58103 59710 58103 ID=Msa1394130-mRNA-1;Parent=Msa1394130;Name=Msa1394130-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|0|0|2|0|389
tig0021785 exon 59530 59710 59530 ID=Msa1394130-mRNA-1:exon:14233;Parent=Msa1394130-mRNA-1
tig0021785 exon 58103 59091 58103 ID=Msa1394130-mRNA-1:exon:14232;Parent=Msa1394130-mRNA-1
tig0021785 CDS 59530 59710 59530 ID=Msa1394130-mRNA-1:cds;Parent=Msa1394130-mRNA-1
tig0021785 CDS 58103 59091 58103 ID=Msa1394130-mRNA-1:cds;Parent=Msa1394130-mRNA-1
Gene Sequence

>Msa1394130

ATGGAAATCTACAAAGAAAGCATCCAATTGATAGAGACGAACAACCAAGACCGTATCCATACGATTTTGCATTTCTGTACAAATATAATATGTTTCCTTATTCTAAGTGGTTATTCTATTAGGGGTAATCAAGAACTCATTATTCTTAACTCTTGGGTTCAAGAATTTCTATATAACTTAAAAATTTTCAGGATGAATGATTGGACCATGCAAACTAGAAATGCTTTTTCTTGGATAAAGGAAGAGATTACCCGATCCATTTCCGTATTGCTCATGATCTATATAATAACTCGAGCACCCATTTCAAATGCATATCCCATTTTTGCTCAACAGGGTTATGAAAATCCGAGAGAAGCTACCGGGCGGATTGTATGTGCTAATTGCCATTTAGCTAATAAGCCTGTAGATATTGAGGTTCCACAAGCGGTACTTCCCGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAAGTTAAACAAGTTCTTGCTAATGGTAAAAAAGGGGCTTTGAATGTAGGTGCTGTTCTTATTTTACCAGAGGGTTTTGAATTGGCCCCTCCTGATCGTATTTCGCCCGAGATTAAAGAAAAAATAGGTAATTTGTCTTTTCAAAGCTATCGTCCCACAAAAAAAAATATTCTTGTGGTAGGCCCCGTTCCTGGGAAGAAATATAGTGAAATTACCTTTCCTATTCTTTCTCCAGATCCCGCTACTAAGAGAGATGTTCACTTCTTAAAATATCCTATATACGTAGGCGGGAATAGGGGAAGGGGTCAGATTTATCCCGACGGGAGCAAGAGTAATAATAATGTTTATAATGCTACAGCAACAGGTATAGTAAATAAAATTATACGAAAAGAAAAAGGTGGATACGAAATAACGATAGTGGATGCATCGGATGGACGTGAAGTGATTGATATTATACCGCCAGGACCAGAACTTCTTGTTTCAGAGGGTGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCAGAAATAGTGCTTCAAGATCCGTTACGTGTACAAGGTCTGTTGTTCTTCTTGGCATCTATTATTTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAATTTGAAAAGGTTCAATTGTCCGAAATGAATTTTTAG

Protein sequence

>Msa1394130

MEIYKESIQLIETNNQDRIHTILHFCTNIICFLILSGYSIRGNQELIILNSWVQEFLYNLKIFRMNDWTMQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQVKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEIKEKIGNLSFQSYRPTKKNILVVGPVPGKKYSEITFPILSPDPATKRDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATATGIVNKIIRKEKGGYEITIVDASDGREVIDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIILAQIFLVLKKKQFEKVQLSEMNF*