Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366000 | YP_009141600.1 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 3.55e-143 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366000 | sp|Q9BBT5|RR4_LOTJA | 95.522 | 201 | 9 | 0 | 1 | 201 | 1 | 201 | 8.95e-140 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366000 | A0A0F6NLD0 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 1.70e-143 | 407 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095170 | Msa1366000 | 0.821080 | 4.882736e-53 | -8.615850e-47 |
| Msa0095190 | Msa1366000 | 0.815350 | 9.672676e-52 | -8.615850e-47 |
| Msa0095210 | Msa1366000 | 0.820311 | 7.335849e-53 | -8.615850e-47 |
| Msa0095290 | Msa1366000 | 0.829594 | 4.717892e-55 | -8.615850e-47 |
| Msa1354320 | Msa1366000 | 0.801028 | 1.092438e-48 | -8.615850e-47 |
| Msa1354330 | Msa1366000 | 0.820963 | 5.196476e-53 | -8.615850e-47 |
| Msa1354340 | Msa1366000 | 0.812365 | 4.398291e-51 | -8.615850e-47 |
| Msa1354350 | Msa1366000 | 0.857372 | 1.706770e-62 | -8.615850e-47 |
| Msa1354380 | Msa1366000 | 0.864883 | 8.822979e-65 | -8.615850e-47 |
| Msa1354390 | Msa1366000 | 0.842706 | 2.194793e-58 | -8.615850e-47 |
| Msa1354880 | Msa1366000 | 0.803818 | 2.907892e-49 | -8.615850e-47 |
| Msa1354900 | Msa1366000 | 0.838973 | 2.091925e-57 | -8.615850e-47 |
| Msa1354930 | Msa1366000 | 0.803082 | 4.130373e-49 | -8.615850e-47 |
| Msa1354950 | Msa1366000 | 0.844532 | 7.132678e-59 | -8.615850e-47 |
| Msa1355050 | Msa1366000 | 0.820958 | 5.209884e-53 | -8.615850e-47 |
| Msa1355070 | Msa1366000 | 0.838760 | 2.374630e-57 | -8.615850e-47 |
| Msa1355080 | Msa1366000 | 0.805660 | 1.199383e-49 | -8.615850e-47 |
| Msa1355090 | Msa1366000 | 0.800378 | 1.482679e-48 | -8.615850e-47 |
| Msa1355100 | Msa1366000 | 0.811050 | 8.496430e-51 | -8.615850e-47 |
| Msa1366000 | Msa1366010 | 0.843188 | 1.634049e-58 | -8.615850e-47 |
| Msa1366000 | Msa1366040 | 0.812895 | 3.368414e-51 | -8.615850e-47 |
| Msa1366000 | Msa1366050 | 0.851152 | 1.069141e-60 | -8.615850e-47 |
| Msa1366000 | Msa1368270 | 0.867438 | 1.368768e-65 | -8.615850e-47 |
| Msa1366000 | Msa1368280 | 0.849333 | 3.458664e-60 | -8.615850e-47 |
| Msa1366000 | Msa1368290 | 0.865022 | 7.980985e-65 | -8.615850e-47 |
| Msa1366000 | Msa1368300 | 0.818230 | 2.184638e-52 | -8.615850e-47 |
| Msa1366000 | Msa1380570 | 0.809088 | 2.249302e-50 | -8.615850e-47 |
| Msa1366000 | Msa1380590 | 0.821664 | 3.579288e-53 | -8.615850e-47 |
| Msa1366000 | Msa1380600 | 0.812635 | 3.838739e-51 | -8.615850e-47 |
| Msa1366000 | Msa1380640 | 0.874621 | 5.853397e-68 | -8.615850e-47 |
| Msa1366000 | Msa1380650 | 0.825886 | 3.670436e-54 | -8.615850e-47 |
| Msa1366000 | Msa1380710 | 0.820462 | 6.774034e-53 | -8.615850e-47 |
| Msa1366000 | Msa1394040 | 0.803660 | 3.135772e-49 | -8.615850e-47 |
| Msa1366000 | Msa1394060 | 0.847731 | 9.608733e-60 | -8.615850e-47 |
| Msa1366000 | Msa1394130 | 0.805900 | 1.067670e-49 | -8.615850e-47 |
| Msa1366000 | Msa1394150 | 0.811070 | 8.414898e-51 | -8.615850e-47 |
| Msa1366000 | Msa1394160 | 0.804521 | 2.076217e-49 | -8.615850e-47 |
| Msa1366000 | Msa1394210 | 0.809868 | 1.529594e-50 | -8.615850e-47 |
| Msa1366000 | Msa1394220 | 0.811677 | 6.211456e-51 | -8.615850e-47 |
| Msa1366000 | Msa1394230 | 0.817390 | 3.381138e-52 | -8.615850e-47 |
| Msa1366000 | Msa1394250 | 0.831077 | 2.047296e-55 | -8.615850e-47 |
| Msa1366000 | Msa1398700 | 0.817288 | 3.564180e-52 | -8.615850e-47 |
| Msa1366000 | Msa1398710 | 0.829239 | 5.751817e-55 | -8.615850e-47 |
| Msa1366000 | Msa1398720 | 0.848371 | 6.398208e-60 | -8.615850e-47 |
| Msa0173880 | Msa1366000 | 0.830473 | 2.879462e-55 | -8.615850e-47 |
| Msa0202640 | Msa1366000 | 0.815323 | 9.803628e-52 | -8.615850e-47 |
| Msa0221840 | Msa1366000 | 0.817973 | 2.497964e-52 | -8.615850e-47 |
| Msa1269400 | Msa1366000 | 0.815496 | 8.971780e-52 | -8.615850e-47 |
| Msa1269420 | Msa1366000 | 0.839429 | 1.593540e-57 | -8.615850e-47 |
| Msa0370210 | Msa1366000 | 0.819535 | 1.103768e-52 | -8.615850e-47 |
| Msa0398630 | Msa1366000 | 0.810673 | 1.025627e-50 | -8.615850e-47 |
| Msa0449920 | Msa1366000 | 0.819039 | 1.431685e-52 | -8.615850e-47 |
| Msa0983700 | Msa1366000 | 0.822879 | 1.870032e-53 | -8.615850e-47 |
| Msa0983720 | Msa1366000 | 0.823244 | 1.537240e-53 | -8.615850e-47 |
| Msa1086050 | Msa1366000 | 0.818091 | 2.348468e-52 | -8.615850e-47 |
| Msa1086070 | Msa1366000 | 0.814989 | 1.163018e-51 | -8.615850e-47 |
| Msa1086100 | Msa1366000 | 0.811093 | 8.316972e-51 | -8.615850e-47 |
| Msa1086140 | Msa1366000 | 0.817651 | 2.953100e-52 | -8.615850e-47 |
| Msa1086150 | Msa1366000 | 0.826633 | 2.437854e-54 | -8.615850e-47 |
| Msa1086180 | Msa1366000 | 0.819072 | 1.407424e-52 | -8.615850e-47 |
| Msa1086270 | Msa1366000 | 0.810241 | 1.271428e-50 | -8.615850e-47 |
| Msa1086280 | Msa1366000 | 0.824258 | 8.896329e-54 | -8.615850e-47 |
| Msa1086300 | Msa1366000 | 0.823627 | 1.250990e-53 | -8.615850e-47 |
| Msa1086360 | Msa1366000 | 0.815831 | 7.555802e-52 | -8.615850e-47 |
| Msa1086380 | Msa1366000 | 0.812166 | 4.859831e-51 | -8.615850e-47 |
| Msa1086430 | Msa1366000 | 0.813058 | 3.100947e-51 | -8.615850e-47 |
| Msa1086450 | Msa1366000 | 0.817162 | 3.804349e-52 | -8.615850e-47 |
| Msa1086470 | Msa1366000 | 0.816812 | 4.560182e-52 | -8.615850e-47 |
| Msa1086660 | Msa1366000 | 0.807887 | 4.058695e-50 | -8.615850e-47 |
| Msa1086860 | Msa1366000 | 0.823288 | 1.501308e-53 | -8.615850e-47 |
| Msa1086880 | Msa1366000 | 0.813745 | 2.191449e-51 | -8.615850e-47 |
| Msa1086890 | Msa1366000 | 0.803410 | 3.533217e-49 | -8.615850e-47 |
| Msa1086910 | Msa1366000 | 0.810632 | 1.046628e-50 | -8.615850e-47 |
| Msa0268170 | Msa1366000 | 0.827607 | 1.425311e-54 | -8.615850e-47 |
| Msa0268190 | Msa1366000 | 0.821691 | 3.529590e-53 | -8.615850e-47 |
| Msa0268370 | Msa1366000 | 0.812636 | 3.838209e-51 | -8.615850e-47 |
| Msa0268390 | Msa1366000 | 0.828035 | 1.124652e-54 | -8.615850e-47 |
| Msa0268400 | Msa1366000 | 0.803080 | 4.134866e-49 | -8.615850e-47 |
| Msa0268410 | Msa1366000 | 0.816996 | 4.145421e-52 | -8.615850e-47 |
| Msa0268430 | Msa1366000 | 0.818851 | 1.579454e-52 | -8.615850e-47 |
| Msa0268530 | Msa1366000 | 0.822585 | 2.189061e-53 | -8.615850e-47 |
| Msa0268550 | Msa1366000 | 0.828733 | 7.631290e-55 | -8.615850e-47 |
| Msa0268580 | Msa1366000 | 0.810538 | 1.096628e-50 | -8.615850e-47 |
| Msa0268630 | Msa1366000 | 0.820527 | 6.542568e-53 | -8.615850e-47 |
| Msa0268640 | Msa1366000 | 0.822851 | 1.898220e-53 | -8.615850e-47 |
| Msa0268720 | Msa1366000 | 0.831581 | 1.539141e-55 | -8.615850e-47 |
| Msa0268740 | Msa1366000 | 0.820431 | 6.885284e-53 | -8.615850e-47 |
| Msa0268830 | Msa1366000 | 0.815415 | 9.352044e-52 | -8.615850e-47 |
| Msa0268840 | Msa1366000 | 0.811494 | 6.808933e-51 | -8.615850e-47 |
| Msa0268860 | Msa1366000 | 0.815615 | 8.443394e-52 | -8.615850e-47 |
| Msa0268920 | Msa1366000 | 0.824644 | 7.219390e-54 | -8.615850e-47 |
| Msa0268940 | Msa1366000 | 0.818899 | 1.540345e-52 | -8.615850e-47 |
| Msa0268960 | Msa1366000 | 0.805482 | 1.307053e-49 | -8.615850e-47 |
| Msa0269040 | Msa1366000 | 0.804077 | 2.568183e-49 | -8.615850e-47 |
| Msa0269050 | Msa1366000 | 0.824146 | 9.452369e-54 | -8.615850e-47 |
| Msa0269070 | Msa1366000 | 0.815006 | 1.153260e-51 | -8.615850e-47 |
| Msa0344180 | Msa1366000 | 0.822043 | 2.925212e-53 | -8.615850e-47 |
| Msa0344190 | Msa1366000 | 0.819068 | 1.410275e-52 | -8.615850e-47 |
| Msa0344210 | Msa1366000 | 0.809071 | 2.267958e-50 | -8.615850e-47 |
| Msa0344280 | Msa1366000 | 0.827405 | 1.593514e-54 | -8.615850e-47 |
| Msa0344300 | Msa1366000 | 0.825430 | 4.708405e-54 | -8.615850e-47 |
| Msa1143120 | Msa1366000 | 0.807121 | 5.899852e-50 | -8.615850e-47 |
| Msa1143130 | Msa1366000 | 0.819741 | 9.906341e-53 | -8.615850e-47 |
| Msa1143160 | Msa1366000 | 0.801064 | 1.074077e-48 | -8.615850e-47 |
| Msa0483990 | Msa1366000 | 0.851602 | 7.977651e-61 | -8.615850e-47 |
| Msa0582510 | Msa1366000 | 0.816767 | 4.667010e-52 | -8.615850e-47 |
| Msa0582520 | Msa1366000 | 0.821875 | 3.199658e-53 | -8.615850e-47 |
| Msa0582540 | Msa1366000 | 0.811389 | 7.173708e-51 | -8.615850e-47 |
| Msa0582610 | Msa1366000 | 0.823197 | 1.576771e-53 | -8.615850e-47 |
| Msa0582630 | Msa1366000 | 0.812236 | 4.692915e-51 | -8.615850e-47 |
| Msa0582640 | Msa1366000 | 0.802015 | 6.854462e-49 | -8.615850e-47 |
| Msa0582660 | Msa1366000 | 0.808264 | 3.373599e-50 | -8.615850e-47 |
| Msa0582690 | Msa1366000 | 0.802987 | 4.321351e-49 | -8.615850e-47 |
| Msa0582700 | Msa1366000 | 0.833186 | 6.162889e-56 | -8.615850e-47 |
| Msa0582720 | Msa1366000 | 0.829720 | 4.396096e-55 | -8.615850e-47 |
| Msa0582750 | Msa1366000 | 0.825190 | 5.366298e-54 | -8.615850e-47 |
| Msa0582760 | Msa1366000 | 0.802654 | 5.062674e-49 | -8.615850e-47 |
| Msa0582780 | Msa1366000 | 0.814912 | 1.209854e-51 | -8.615850e-47 |
| Msa0582810 | Msa1366000 | 0.810751 | 9.866531e-51 | -8.615850e-47 |
| Msa0582820 | Msa1366000 | 0.832932 | 7.127722e-56 | -8.615850e-47 |
| Msa0582840 | Msa1366000 | 0.822538 | 2.244842e-53 | -8.615850e-47 |
| Msa0582890 | Msa1366000 | 0.819384 | 1.194902e-52 | -8.615850e-47 |
| Msa0582910 | Msa1366000 | 0.815207 | 1.040648e-51 | -8.615850e-47 |
| Msa0582930 | Msa1366000 | 0.811285 | 7.556772e-51 | -8.615850e-47 |
| Msa0591370 | Msa1366000 | 0.812311 | 4.519815e-51 | -8.615850e-47 |
| Msa0867640 | Msa1366000 | 0.867439 | 1.367113e-65 | -8.615850e-47 |
| Msa0867650 | Msa1366000 | 0.821082 | 4.878817e-53 | -8.615850e-47 |
| Msa0924850 | Msa1366000 | 0.810446 | 1.148073e-50 | -8.615850e-47 |
| Msa0924870 | Msa1366000 | 0.812919 | 3.327952e-51 | -8.615850e-47 |
| Msa0924990 | Msa1366000 | 0.833306 | 5.752218e-56 | -8.615850e-47 |
| Msa0925040 | Msa1366000 | 0.828909 | 6.915717e-55 | -8.615850e-47 |
| Msa0931070 | Msa1366000 | 0.822438 | 2.368886e-53 | -8.615850e-47 |
| Msa0931080 | Msa1366000 | 0.822764 | 1.989508e-53 | -8.615850e-47 |
| Msa0931100 | Msa1366000 | 0.828571 | 8.350243e-55 | -8.615850e-47 |
| Msa0931110 | Msa1366000 | 0.807358 | 5.255520e-50 | -8.615850e-47 |
| Msa0931130 | Msa1366000 | 0.820270 | 7.496323e-53 | -8.615850e-47 |
| Msa0931140 | Msa1366000 | 0.820545 | 6.480488e-53 | -8.615850e-47 |
| Msa0931160 | Msa1366000 | 0.822000 | 2.992875e-53 | -8.615850e-47 |
| Msa0931190 | Msa1366000 | 0.832217 | 1.072516e-55 | -8.615850e-47 |
| Msa0931210 | Msa1366000 | 0.833798 | 4.335819e-56 | -8.615850e-47 |
| Msa0931240 | Msa1366000 | 0.808876 | 2.497341e-50 | -8.615850e-47 |
| Msa0931260 | Msa1366000 | 0.808684 | 2.744152e-50 | -8.615850e-47 |
| Msa0931270 | Msa1366000 | 0.821710 | 3.493479e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366000 | MtrunA17_Chr7g0229301 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1366000 | MtrunA17_Chr6g0454441 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1366000 | MtrunA17_Chr4g0016451 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1366000 | MtrunA17_Chr6g0466281 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1366000 | MtrunA17_CPg0493311 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1366000 | MtrunA17_Chr7g0229661 | 84.080 | 201 | 13 | 1 | 1 | 201 | 1 | 182 | 1.89e-115 | 327 |
| Msa1366000 | MtrunA17_Chr4g0015291 | 97.436 | 156 | 4 | 0 | 1 | 156 | 1 | 156 | 3.32e-108 | 307 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366000 | ATCG00380.1 | 88.060 | 201 | 24 | 0 | 1 | 201 | 1 | 201 | 2.12e-126 | 355 |
Find 33 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATAATAGATAGTAAA+TGG | 0.189787 | tig0018442:+95861 | Msa1366000:CDS |
| GATTGACTAATCCTTTATAT+TGG | 0.284280 | tig0018442:-95841 | None:intergenic |
| CTTGATCCATTCCAATATAA+AGG | 0.291752 | tig0018442:+95830 | Msa1366000:CDS |
| CTTAAATACGTTCGTATCGC+TGG | 0.342652 | tig0018442:+95530 | Msa1366000:CDS |
| ACAATTACTTGAAATGCGTT+TGG | 0.359489 | tig0018442:+95586 | Msa1366000:CDS |
| TTTGAAAATTAATGAATTGC+TGG | 0.365999 | tig0018442:+95889 | Msa1366000:CDS |
| ATGGATTGGCAATTCTTCGC+GGG | 0.450528 | tig0018442:-95801 | None:intergenic |
| TACCAGGACTAACTAGTAAA+CGG | 0.463029 | tig0018442:+95387 | Msa1366000:CDS |
| TGAGGTTTGCAACGATAACT+TGG | 0.468099 | tig0018442:-95710 | None:intergenic |
| ACTAATCCTTTATATTGGAA+TGG | 0.475526 | tig0018442:-95836 | None:intergenic |
| GTCTGTGGTTAACTAATTGA+CGG | 0.477609 | tig0018442:-95655 | None:intergenic |
| TCAAATAATAGATAGTAAAT+GGG | 0.487910 | tig0018442:+95862 | Msa1366000:CDS |
| ATAATAGATAGTAAATGGGT+TGG | 0.504615 | tig0018442:+95866 | Msa1366000:CDS |
| CTAAGTTCGCTTCCAACTGT+AGG | 0.508663 | tig0018442:-95410 | None:intergenic |
| GGATCAAGAGTCAAATGGAT+TGG | 0.511159 | tig0018442:-95815 | None:intergenic |
| GGAAAAGCGAAAGGTTCAAC+CGG | 0.516182 | tig0018442:+95551 | Msa1366000:CDS |
| TCTGTGGTTAACTAATTGAC+GGG | 0.521261 | tig0018442:-95654 | None:intergenic |
| GGCCGTTTACTAGTTAGTCC+TGG | 0.527000 | tig0018442:-95389 | None:intergenic |
| AATGGATTGGCAATTCTTCG+CGG | 0.545268 | tig0018442:-95802 | None:intergenic |
| TCAAGATATTATTACAGCGA+AGG | 0.559737 | tig0018442:+95730 | Msa1366000:CDS |
| TTCGCTGTAATAATATCTTG+AGG | 0.560954 | tig0018442:-95728 | None:intergenic |
| TAATTGTAGTAAAACTTGAC+CGG | 0.568250 | tig0018442:-95570 | None:intergenic |
| ACTAGTAAACGGCCTACAGT+TGG | 0.568372 | tig0018442:+95398 | Msa1366000:CDS |
| CAAGATATTATTACAGCGAA+GGG | 0.569002 | tig0018442:+95731 | Msa1366000:CDS |
| TTAACTAATTGACGGGCTTG+AGG | 0.581554 | tig0018442:-95647 | None:intergenic |
| GGAATGGATCAAGAGTCAAA+TGG | 0.582974 | tig0018442:-95820 | None:intergenic |
| GATTGGCAATTCTTCGCGGG+GGG | 0.584547 | tig0018442:-95798 | None:intergenic |
| TGGATTGGCAATTCTTCGCG+GGG | 0.610754 | tig0018442:-95800 | None:intergenic |
| TGTTTATGTCACGTTACAGA+GGG | 0.632465 | tig0018442:+95330 | None:intergenic |
| GTGTTTATGTCACGTTACAG+AGG | 0.633128 | tig0018442:+95329 | None:intergenic |
| CGTATCGCTGGAAAAGCGAA+AGG | 0.633501 | tig0018442:+95542 | Msa1366000:CDS |
| CATTAACTAAAACATGTCTG+TGG | 0.663264 | tig0018442:-95670 | None:intergenic |
| GGATTGGCAATTCTTCGCGG+GGG | 0.681198 | tig0018442:-95799 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAATAATAGATAGTAAA+TGG | + | tig0018442:95861-95880 | Msa1366000:CDS | 15.0% |
| !! | TCAAATAATAGATAGTAAAT+GGG | + | tig0018442:95862-95881 | Msa1366000:CDS | 15.0% |
| !! | TTTGAAAATTAATGAATTGC+TGG | + | tig0018442:95889-95908 | Msa1366000:CDS | 20.0% |
| !! | CAAAAATTGCGTTTTCATTA+TGG | + | tig0018442:95488-95507 | Msa1366000:CDS | 25.0% |
| ! | TAATTGTAGTAAAACTTGAC+CGG | - | tig0018442:95573-95592 | None:intergenic | 25.0% |
| !!! | GATAACATACTTTTTCGATT+GGG | + | tig0018442:95608-95627 | Msa1366000:CDS | 25.0% |
| ! | ACTAATCCTTTATATTGGAA+TGG | - | tig0018442:95839-95858 | None:intergenic | 25.0% |
| ! | GATTGACTAATCCTTTATAT+TGG | - | tig0018442:95844-95863 | None:intergenic | 25.0% |
| ! | ATAATAGATAGTAAATGGGT+TGG | + | tig0018442:95866-95885 | Msa1366000:CDS | 25.0% |
| TTTCAAAAAAATACGTCGTC+TGG | + | tig0018442:95358-95377 | Msa1366000:CDS | 30.0% | |
| TTCAAAAAAATACGTCGTCT+GGG | + | tig0018442:95359-95378 | Msa1366000:CDS | 30.0% | |
| ACAATTACTTGAAATGCGTT+TGG | + | tig0018442:95586-95605 | Msa1366000:CDS | 30.0% | |
| !!! | GGATAACATACTTTTTCGAT+TGG | + | tig0018442:95607-95626 | Msa1366000:CDS | 30.0% |
| CATTAACTAAAACATGTCTG+TGG | - | tig0018442:95673-95692 | None:intergenic | 30.0% | |
| !!! | CACAGACATGTTTTAGTTAA+TGG | + | tig0018442:95671-95690 | Msa1366000:CDS | 30.0% |
| TTCGCTGTAATAATATCTTG+AGG | - | tig0018442:95731-95750 | None:intergenic | 30.0% | |
| TCAAGATATTATTACAGCGA+AGG | + | tig0018442:95730-95749 | Msa1366000:CDS | 30.0% | |
| CAAGATATTATTACAGCGAA+GGG | + | tig0018442:95731-95750 | Msa1366000:CDS | 30.0% | |
| CTTGATCCATTCCAATATAA+AGG | + | tig0018442:95830-95849 | Msa1366000:CDS | 30.0% | |
| !!! | CGACGTATTTTTTTGAAACG+AGG | - | tig0018442:95356-95375 | None:intergenic | 35.0% |
| TCAAAAAAATACGTCGTCTG+GGG | + | tig0018442:95360-95379 | Msa1366000:CDS | 35.0% | |
| TACCAGGACTAACTAGTAAA+CGG | + | tig0018442:95387-95406 | Msa1366000:CDS | 35.0% | |
| !!! | CATACTTTTTCGATTGGGTA+TGG | + | tig0018442:95613-95632 | Msa1366000:CDS | 35.0% |
| TCTGTGGTTAACTAATTGAC+GGG | - | tig0018442:95657-95676 | None:intergenic | 35.0% | |
| GTCTGTGGTTAACTAATTGA+CGG | - | tig0018442:95658-95677 | None:intergenic | 35.0% | |
| CAAAAAAATACGTCGTCTGG+GGG | + | tig0018442:95361-95380 | Msa1366000:CDS | 40.0% | |
| !!! | ATTTTTTACTCGAGCGCGAT+TGG | - | tig0018442:95439-95458 | None:intergenic | 40.0% |
| CTTAAATACGTTCGTATCGC+TGG | + | tig0018442:95530-95549 | Msa1366000:CDS | 40.0% | |
| !! | TTAACTAATTGACGGGCTTG+AGG | - | tig0018442:95650-95669 | None:intergenic | 40.0% |
| TGAGGTTTGCAACGATAACT+TGG | - | tig0018442:95713-95732 | None:intergenic | 40.0% | |
| !! | AATGGATTGGCAATTCTTCG+CGG | - | tig0018442:95805-95824 | None:intergenic | 40.0% |
| GGATCAAGAGTCAAATGGAT+TGG | - | tig0018442:95818-95837 | None:intergenic | 40.0% | |
| GGAATGGATCAAGAGTCAAA+TGG | - | tig0018442:95823-95842 | None:intergenic | 40.0% | |
| ACTAGTAAACGGCCTACAGT+TGG | + | tig0018442:95398-95417 | Msa1366000:CDS | 45.0% | |
| CTAAGTTCGCTTCCAACTGT+AGG | - | tig0018442:95413-95432 | None:intergenic | 45.0% | |
| GGAAAAGCGAAAGGTTCAAC+CGG | + | tig0018442:95551-95570 | Msa1366000:CDS | 45.0% | |
| !! | ATGGATTGGCAATTCTTCGC+GGG | - | tig0018442:95804-95823 | None:intergenic | 45.0% |
| GGCCGTTTACTAGTTAGTCC+TGG | - | tig0018442:95392-95411 | None:intergenic | 50.0% | |
| CGTATCGCTGGAAAAGCGAA+AGG | + | tig0018442:95542-95561 | Msa1366000:CDS | 50.0% | |
| !! | TGGATTGGCAATTCTTCGCG+GGG | - | tig0018442:95803-95822 | None:intergenic | 50.0% |
| GATTGGCAATTCTTCGCGGG+GGG | - | tig0018442:95801-95820 | None:intergenic | 55.0% | |
| ! | GGATTGGCAATTCTTCGCGG+GGG | - | tig0018442:95802-95821 | None:intergenic | 55.0% |
| CGTCGTCTGGGGGCTTTACC+AGG | + | tig0018442:95371-95390 | Msa1366000:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018442 | gene | 95335 | 95940 | 95335 | ID=Msa1366000;Name=Msa1366000 |
| tig0018442 | mRNA | 95335 | 95940 | 95335 | ID=Msa1366000-mRNA-1;Parent=Msa1366000;Name=Msa1366000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|201 |
| tig0018442 | exon | 95335 | 95940 | 95335 | ID=Msa1366000-mRNA-1:exon:14915;Parent=Msa1366000-mRNA-1 |
| tig0018442 | CDS | 95335 | 95940 | 95335 | ID=Msa1366000-mRNA-1:cds;Parent=Msa1366000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
