Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354340 | YP_009141600.1 | 95.361 | 194 | 9 | 0 | 1 | 194 | 1 | 194 | 6.26e-128 | 373 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354340 | sp|Q9BBT5|RR4_LOTJA | 90.722 | 194 | 18 | 0 | 1 | 194 | 1 | 194 | 1.70e-124 | 357 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354340 | A0A0F6NLD0 | 95.361 | 194 | 9 | 0 | 1 | 194 | 1 | 194 | 2.99e-128 | 373 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095150 | Msa1354340 | 0.810288 | 1.241904e-50 | -8.615850e-47 |
| Msa0095170 | Msa1354340 | 0.843893 | 1.059061e-58 | -8.615850e-47 |
| Msa0095190 | Msa1354340 | 0.806076 | 9.803228e-50 | -8.615850e-47 |
| Msa0095210 | Msa1354340 | 0.866950 | 1.958917e-65 | -8.615850e-47 |
| Msa0095290 | Msa1354340 | 0.876052 | 1.897096e-68 | -8.615850e-47 |
| Msa1354320 | Msa1354340 | 0.941304 | 5.249258e-101 | -8.615850e-47 |
| Msa1354340 | Msa1354350 | 0.842029 | 3.318229e-58 | -8.615850e-47 |
| Msa1354340 | Msa1354380 | 0.857578 | 1.483925e-62 | -8.615850e-47 |
| Msa1354340 | Msa1354390 | 0.814363 | 1.600537e-51 | -8.615850e-47 |
| Msa1354340 | Msa1354880 | 0.839505 | 1.522324e-57 | -8.615850e-47 |
| Msa1354340 | Msa1354900 | 0.838542 | 2.703720e-57 | -8.615850e-47 |
| Msa1354340 | Msa1354910 | 0.834634 | 2.675562e-56 | -8.615850e-47 |
| Msa1354340 | Msa1354920 | 0.860985 | 1.409418e-63 | -8.615850e-47 |
| Msa1354340 | Msa1354930 | 0.824276 | 8.813241e-54 | -8.615850e-47 |
| Msa1354340 | Msa1354950 | 0.844703 | 6.413621e-59 | -8.615850e-47 |
| Msa1354340 | Msa1355050 | 0.835083 | 2.062418e-56 | -8.615850e-47 |
| Msa1354340 | Msa1355070 | 0.834304 | 3.238297e-56 | -8.615850e-47 |
| Msa1354340 | Msa1355080 | 0.823049 | 1.706926e-53 | -8.615850e-47 |
| Msa1354340 | Msa1355090 | 0.864726 | 9.883020e-65 | -8.615850e-47 |
| Msa1354340 | Msa1355100 | 0.823564 | 1.294526e-53 | -8.615850e-47 |
| Msa1354340 | Msa1366000 | 0.812365 | 4.398291e-51 | -8.615850e-47 |
| Msa1354340 | Msa1366010 | 0.825755 | 3.942106e-54 | -8.615850e-47 |
| Msa1354340 | Msa1366040 | 0.810508 | 1.113018e-50 | -8.615850e-47 |
| Msa1354340 | Msa1366050 | 0.829533 | 4.880774e-55 | -8.615850e-47 |
| Msa1354340 | Msa1368270 | 0.829738 | 4.352452e-55 | -8.615850e-47 |
| Msa1354340 | Msa1368280 | 0.805349 | 1.393505e-49 | -8.615850e-47 |
| Msa1354340 | Msa1368290 | 0.837095 | 6.361289e-57 | -8.615850e-47 |
| Msa1354340 | Msa1368300 | 0.809983 | 1.444907e-50 | -8.615850e-47 |
| Msa1354340 | Msa1380550 | 0.819429 | 1.166992e-52 | -8.615850e-47 |
| Msa1354340 | Msa1380570 | 0.855031 | 8.287548e-62 | -8.615850e-47 |
| Msa1354340 | Msa1380590 | 0.807142 | 5.839848e-50 | -8.615850e-47 |
| Msa1354340 | Msa1380600 | 0.825200 | 5.337063e-54 | -8.615850e-47 |
| Msa1354340 | Msa1380610 | 0.812447 | 4.220225e-51 | -8.615850e-47 |
| Msa1354340 | Msa1380620 | 0.802266 | 6.086777e-49 | -8.615850e-47 |
| Msa1354340 | Msa1380640 | 0.808238 | 3.415796e-50 | -8.615850e-47 |
| Msa1354340 | Msa1380710 | 0.824449 | 8.022392e-54 | -8.615850e-47 |
| Msa1354340 | Msa1389990 | 0.802187 | 6.318301e-49 | -8.615850e-47 |
| Msa1354340 | Msa1394030 | 0.845548 | 3.792346e-59 | -8.615850e-47 |
| Msa1354340 | Msa1394040 | 0.839315 | 1.705569e-57 | -8.615850e-47 |
| Msa1354340 | Msa1394060 | 0.868796 | 5.001144e-66 | -8.615850e-47 |
| Msa1354340 | Msa1394130 | 0.861765 | 8.152952e-64 | -8.615850e-47 |
| Msa1354340 | Msa1394150 | 0.837960 | 3.819104e-57 | -8.615850e-47 |
| Msa1354340 | Msa1394160 | 0.867809 | 1.040605e-65 | -8.615850e-47 |
| Msa1354340 | Msa1394210 | 0.855930 | 4.531728e-62 | -8.615850e-47 |
| Msa1354340 | Msa1394220 | 0.811169 | 8.007632e-51 | -8.615850e-47 |
| Msa1354340 | Msa1394230 | 0.817313 | 3.517635e-52 | -8.615850e-47 |
| Msa1354340 | Msa1394250 | 0.867821 | 1.031847e-65 | -8.615850e-47 |
| Msa1354340 | Msa1398700 | 0.804122 | 2.513596e-49 | -8.615850e-47 |
| Msa1354340 | Msa1398720 | 0.820473 | 6.732467e-53 | -8.615850e-47 |
| Msa0139800 | Msa1354340 | 0.801056 | 1.078110e-48 | -8.615850e-47 |
| Msa0141090 | Msa1354340 | 0.808905 | 2.461186e-50 | -8.615850e-47 |
| Msa0173880 | Msa1354340 | 0.845527 | 3.841900e-59 | -8.615850e-47 |
| Msa0202640 | Msa1354340 | 0.843042 | 1.786614e-58 | -8.615850e-47 |
| Msa0221840 | Msa1354340 | 0.861007 | 1.388238e-63 | -8.615850e-47 |
| Msa1269400 | Msa1354340 | 0.805358 | 1.387135e-49 | -8.615850e-47 |
| Msa1269420 | Msa1354340 | 0.841786 | 3.847126e-58 | -8.615850e-47 |
| Msa1305090 | Msa1354340 | 0.830948 | 2.202576e-55 | -8.615850e-47 |
| Msa1305100 | Msa1354340 | 0.800619 | 1.323817e-48 | -8.615850e-47 |
| Msa0370210 | Msa1354340 | 0.819353 | 1.214079e-52 | -8.615850e-47 |
| Msa0374840 | Msa1354340 | 0.808836 | 2.545852e-50 | -8.615850e-47 |
| Msa0375100 | Msa1354340 | 0.809686 | 1.673488e-50 | -8.615850e-47 |
| Msa0398630 | Msa1354340 | 0.830966 | 2.180462e-55 | -8.615850e-47 |
| Msa0449920 | Msa1354340 | 0.860269 | 2.323157e-63 | -8.615850e-47 |
| Msa0983680 | Msa1354340 | 0.803374 | 3.593753e-49 | -8.615850e-47 |
| Msa0983690 | Msa1354340 | 0.808105 | 3.646950e-50 | -8.615850e-47 |
| Msa0983700 | Msa1354340 | 0.834712 | 2.558417e-56 | -8.615850e-47 |
| Msa0983720 | Msa1354340 | 0.836840 | 7.393194e-57 | -8.615850e-47 |
| Msa1064410 | Msa1354340 | 0.859396 | 4.258823e-63 | -8.615850e-47 |
| Msa1086030 | Msa1354340 | 0.825070 | 5.726591e-54 | -8.615850e-47 |
| Msa1086050 | Msa1354340 | 0.874139 | 8.529746e-68 | -8.615850e-47 |
| Msa1086070 | Msa1354340 | 0.814892 | 1.222119e-51 | -8.615850e-47 |
| Msa1086090 | Msa1354340 | 0.862414 | 5.153779e-64 | -8.615850e-47 |
| Msa1086100 | Msa1354340 | 0.828047 | 1.116636e-54 | -8.615850e-47 |
| Msa1086140 | Msa1354340 | 0.866964 | 1.939476e-65 | -8.615850e-47 |
| Msa1086150 | Msa1354340 | 0.827496 | 1.515473e-54 | -8.615850e-47 |
| Msa1086180 | Msa1354340 | 0.838208 | 3.296354e-57 | -8.615850e-47 |
| Msa1086190 | Msa1354340 | 0.815899 | 7.299125e-52 | -8.615850e-47 |
| Msa1086200 | Msa1354340 | 0.865102 | 7.531047e-65 | -8.615850e-47 |
| Msa1086210 | Msa1354340 | 0.829958 | 3.846049e-55 | -8.615850e-47 |
| Msa1086270 | Msa1354340 | 0.857752 | 1.317141e-62 | -8.615850e-47 |
| Msa1086280 | Msa1354340 | 0.815154 | 1.069078e-51 | -8.615850e-47 |
| Msa1086300 | Msa1354340 | 0.879782 | 9.404156e-70 | -8.615850e-47 |
| Msa1086320 | Msa1354340 | 0.801598 | 8.349711e-49 | -8.615850e-47 |
| Msa1086360 | Msa1354340 | 0.859048 | 5.414807e-63 | -8.615850e-47 |
| Msa1086380 | Msa1354340 | 0.822559 | 2.220325e-53 | -8.615850e-47 |
| Msa1086420 | Msa1354340 | 0.802637 | 5.104257e-49 | -8.615850e-47 |
| Msa1086430 | Msa1354340 | 0.860241 | 2.369498e-63 | -8.615850e-47 |
| Msa1086450 | Msa1354340 | 0.824417 | 8.165702e-54 | -8.615850e-47 |
| Msa1086470 | Msa1354340 | 0.840569 | 8.035440e-58 | -8.615850e-47 |
| Msa1086490 | Msa1354340 | 0.817095 | 3.938723e-52 | -8.615850e-47 |
| Msa1086640 | Msa1354340 | 0.825291 | 5.077776e-54 | -8.615850e-47 |
| Msa1086660 | Msa1354340 | 0.868868 | 4.740908e-66 | -8.615850e-47 |
| Msa1086670 | Msa1354340 | 0.839115 | 1.921819e-57 | -8.615850e-47 |
| Msa1086680 | Msa1354340 | 0.808875 | 2.497860e-50 | -8.615850e-47 |
| Msa1086860 | Msa1354340 | 0.871684 | 5.666354e-67 | -8.615850e-47 |
| Msa1086880 | Msa1354340 | 0.815163 | 1.063923e-51 | -8.615850e-47 |
| Msa1086890 | Msa1354340 | 0.825369 | 4.867599e-54 | -8.615850e-47 |
| Msa1086900 | Msa1354340 | 0.858327 | 8.888315e-63 | -8.615850e-47 |
| Msa1086910 | Msa1354340 | 0.827424 | 1.576792e-54 | -8.615850e-47 |
| Msa1091700 | Msa1354340 | 0.829689 | 4.473547e-55 | -8.615850e-47 |
| Msa0268170 | Msa1354340 | 0.816189 | 6.286285e-52 | -8.615850e-47 |
| Msa0268190 | Msa1354340 | 0.868536 | 6.069123e-66 | -8.615850e-47 |
| Msa0268350 | Msa1354340 | 0.825994 | 3.460034e-54 | -8.615850e-47 |
| Msa0268370 | Msa1354340 | 0.867580 | 1.232128e-65 | -8.615850e-47 |
| Msa0268390 | Msa1354340 | 0.836749 | 7.797867e-57 | -8.615850e-47 |
| Msa0268410 | Msa1354340 | 0.818176 | 2.246908e-52 | -8.615850e-47 |
| Msa0268430 | Msa1354340 | 0.862790 | 3.949741e-64 | -8.615850e-47 |
| Msa0268450 | Msa1354340 | 0.806861 | 6.696526e-50 | -8.615850e-47 |
| Msa0268510 | Msa1354340 | 0.815286 | 9.992269e-52 | -8.615850e-47 |
| Msa0268530 | Msa1354340 | 0.886774 | 2.552917e-72 | -8.615850e-47 |
| Msa0268550 | Msa1354340 | 0.840927 | 6.474032e-58 | -8.615850e-47 |
| Msa0268560 | Msa1354340 | 0.831877 | 1.300763e-55 | -8.615850e-47 |
| Msa0268570 | Msa1354340 | 0.861417 | 1.041220e-63 | -8.615850e-47 |
| Msa0268580 | Msa1354340 | 0.833147 | 6.302492e-56 | -8.615850e-47 |
| Msa0268630 | Msa1354340 | 0.875295 | 3.448674e-68 | -8.615850e-47 |
| Msa0268640 | Msa1354340 | 0.823622 | 1.254146e-53 | -8.615850e-47 |
| Msa0268660 | Msa1354340 | 0.853548 | 2.222530e-61 | -8.615850e-47 |
| Msa0268670 | Msa1354340 | 0.804240 | 2.375654e-49 | -8.615850e-47 |
| Msa0268700 | Msa1354340 | 0.801425 | 9.060880e-49 | -8.615850e-47 |
| Msa0268720 | Msa1354340 | 0.872970 | 2.110619e-67 | -8.615850e-47 |
| Msa0268740 | Msa1354340 | 0.837910 | 3.932813e-57 | -8.615850e-47 |
| Msa0268750 | Msa1354340 | 0.861706 | 8.499704e-64 | -8.615850e-47 |
| Msa0268830 | Msa1354340 | 0.870639 | 1.253172e-66 | -8.615850e-47 |
| Msa0268840 | Msa1354340 | 0.837829 | 4.125503e-57 | -8.615850e-47 |
| Msa0268860 | Msa1354340 | 0.865209 | 6.972695e-65 | -8.615850e-47 |
| Msa0268920 | Msa1354340 | 0.868123 | 8.251316e-66 | -8.615850e-47 |
| Msa0268940 | Msa1354340 | 0.824010 | 1.017574e-53 | -8.615850e-47 |
| Msa0268950 | Msa1354340 | 0.827025 | 1.964529e-54 | -8.615850e-47 |
| Msa0268960 | Msa1354340 | 0.868594 | 5.812781e-66 | -8.615850e-47 |
| Msa0269040 | Msa1354340 | 0.873722 | 1.179751e-67 | -8.615850e-47 |
| Msa0269050 | Msa1354340 | 0.831412 | 1.693798e-55 | -8.615850e-47 |
| Msa0269070 | Msa1354340 | 0.863832 | 1.878841e-64 | -8.615850e-47 |
| Msa0269090 | Msa1354340 | 0.800540 | 1.373953e-48 | -8.615850e-47 |
| Msa0344180 | Msa1354340 | 0.823170 | 1.599588e-53 | -8.615850e-47 |
| Msa0344190 | Msa1354340 | 0.845945 | 2.958524e-59 | -8.615850e-47 |
| Msa0344210 | Msa1354340 | 0.865766 | 4.654498e-65 | -8.615850e-47 |
| Msa0344260 | Msa1354340 | 0.803088 | 4.119578e-49 | -8.615850e-47 |
| Msa0344280 | Msa1354340 | 0.865098 | 7.555799e-65 | -8.615850e-47 |
| Msa0344300 | Msa1354340 | 0.816986 | 4.168286e-52 | -8.615850e-47 |
| Msa0344310 | Msa1354340 | 0.838481 | 2.803655e-57 | -8.615850e-47 |
| Msa1143120 | Msa1354340 | 0.872585 | 2.839934e-67 | -8.615850e-47 |
| Msa1143130 | Msa1354340 | 0.837762 | 4.292357e-57 | -8.615850e-47 |
| Msa1143160 | Msa1354340 | 0.834644 | 2.660953e-56 | -8.615850e-47 |
| Msa1143170 | Msa1354340 | 0.852127 | 5.660795e-61 | -8.615850e-47 |
| Msa1143180 | Msa1354340 | 0.815958 | 7.080370e-52 | -8.615850e-47 |
| Msa1171640 | Msa1354340 | 0.802457 | 5.560966e-49 | -8.615850e-47 |
| Msa0484040 | Msa1354340 | 0.820435 | 6.871028e-53 | -8.615850e-47 |
| Msa0495270 | Msa1354340 | 0.844880 | 5.748172e-59 | -8.615850e-47 |
| Msa0582510 | Msa1354340 | 0.871966 | 4.566427e-67 | -8.615850e-47 |
| Msa0582520 | Msa1354340 | 0.857862 | 1.222345e-62 | -8.615850e-47 |
| Msa0582540 | Msa1354340 | 0.868856 | 4.784717e-66 | -8.615850e-47 |
| Msa0582610 | Msa1354340 | 0.850719 | 1.415854e-60 | -8.615850e-47 |
| Msa0582630 | Msa1354340 | 0.832228 | 1.065468e-55 | -8.615850e-47 |
| Msa0582640 | Msa1354340 | 0.837058 | 6.500766e-57 | -8.615850e-47 |
| Msa0582650 | Msa1354340 | 0.869246 | 3.574245e-66 | -8.615850e-47 |
| Msa0582660 | Msa1354340 | 0.847287 | 1.272570e-59 | -8.615850e-47 |
| Msa0582690 | Msa1354340 | 0.859263 | 4.668071e-63 | -8.615850e-47 |
| Msa0582700 | Msa1354340 | 0.837713 | 4.419827e-57 | -8.615850e-47 |
| Msa0582720 | Msa1354340 | 0.880991 | 3.478599e-70 | -8.615850e-47 |
| Msa0582730 | Msa1354340 | 0.835801 | 1.357963e-56 | -8.615850e-47 |
| Msa0582750 | Msa1354340 | 0.825262 | 5.160303e-54 | -8.615850e-47 |
| Msa0582760 | Msa1354340 | 0.845461 | 4.003574e-59 | -8.615850e-47 |
| Msa0582770 | Msa1354340 | 0.860001 | 2.799527e-63 | -8.615850e-47 |
| Msa0582780 | Msa1354340 | 0.843126 | 1.697197e-58 | -8.615850e-47 |
| Msa0582810 | Msa1354340 | 0.861734 | 8.328688e-64 | -8.615850e-47 |
| Msa0582820 | Msa1354340 | 0.837818 | 4.152601e-57 | -8.615850e-47 |
| Msa0582840 | Msa1354340 | 0.876785 | 1.058929e-68 | -8.615850e-47 |
| Msa0582890 | Msa1354340 | 0.865722 | 4.805522e-65 | -8.615850e-47 |
| Msa0582910 | Msa1354340 | 0.855784 | 4.999858e-62 | -8.615850e-47 |
| Msa0582920 | Msa1354340 | 0.856248 | 3.658238e-62 | -8.615850e-47 |
| Msa0582930 | Msa1354340 | 0.825849 | 3.745861e-54 | -8.615850e-47 |
| Msa0591380 | Msa1354340 | 0.822586 | 2.187879e-53 | -8.615850e-47 |
| Msa0867640 | Msa1354340 | 0.819563 | 1.087793e-52 | -8.615850e-47 |
| Msa0908480 | Msa1354340 | 0.836070 | 1.160958e-56 | -8.615850e-47 |
| Msa0924830 | Msa1354340 | 0.808513 | 2.985106e-50 | -8.615850e-47 |
| Msa0924850 | Msa1354340 | 0.848829 | 4.774593e-60 | -8.615850e-47 |
| Msa0924870 | Msa1354340 | 0.838518 | 2.742029e-57 | -8.615850e-47 |
| Msa0924880 | Msa1354340 | 0.836394 | 9.603764e-57 | -8.615850e-47 |
| Msa0924990 | Msa1354340 | 0.831306 | 1.798942e-55 | -8.615850e-47 |
| Msa0925040 | Msa1354340 | 0.840183 | 1.013631e-57 | -8.615850e-47 |
| Msa0931070 | Msa1354340 | 0.859162 | 5.006716e-63 | -8.615850e-47 |
| Msa0931080 | Msa1354340 | 0.830878 | 2.291438e-55 | -8.615850e-47 |
| Msa0931100 | Msa1354340 | 0.847207 | 1.338521e-59 | -8.615850e-47 |
| Msa0931110 | Msa1354340 | 0.856472 | 3.144508e-62 | -8.615850e-47 |
| Msa0931130 | Msa1354340 | 0.866284 | 3.191712e-65 | -8.615850e-47 |
| Msa0931140 | Msa1354340 | 0.837565 | 4.821409e-57 | -8.615850e-47 |
| Msa0931160 | Msa1354340 | 0.857790 | 1.283810e-62 | -8.615850e-47 |
| Msa0931190 | Msa1354340 | 0.860934 | 1.460401e-63 | -8.615850e-47 |
| Msa0931210 | Msa1354340 | 0.822055 | 2.906865e-53 | -8.615850e-47 |
| Msa0931220 | Msa1354340 | 0.817205 | 3.720313e-52 | -8.615850e-47 |
| Msa0931230 | Msa1354340 | 0.830288 | 3.195527e-55 | -8.615850e-47 |
| Msa0931240 | Msa1354340 | 0.832695 | 8.161764e-56 | -8.615850e-47 |
| Msa0931260 | Msa1354340 | 0.862952 | 3.520255e-64 | -8.615850e-47 |
| Msa0931270 | Msa1354340 | 0.801062 | 1.075074e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354340 | MtrunA17_Chr7g0229301 | 92.784 | 194 | 14 | 0 | 1 | 194 | 1 | 194 | 4.99e-128 | 363 |
| Msa1354340 | MtrunA17_Chr6g0454441 | 92.784 | 194 | 14 | 0 | 1 | 194 | 1 | 194 | 4.99e-128 | 363 |
| Msa1354340 | MtrunA17_Chr4g0016451 | 92.784 | 194 | 14 | 0 | 1 | 194 | 1 | 194 | 4.99e-128 | 363 |
| Msa1354340 | MtrunA17_Chr6g0466281 | 92.784 | 194 | 14 | 0 | 1 | 194 | 1 | 194 | 4.99e-128 | 363 |
| Msa1354340 | MtrunA17_CPg0493311 | 92.784 | 194 | 14 | 0 | 1 | 194 | 1 | 194 | 4.99e-128 | 363 |
| Msa1354340 | MtrunA17_Chr4g0015291 | 97.436 | 156 | 4 | 0 | 1 | 156 | 1 | 156 | 2.28e-106 | 306 |
| Msa1354340 | MtrunA17_Chr7g0229661 | 79.897 | 194 | 20 | 1 | 1 | 194 | 1 | 175 | 2.90e-101 | 295 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354340 | ATCG00380.1 | 82.990 | 194 | 33 | 0 | 1 | 194 | 1 | 194 | 4.53e-111 | 320 |
Find 64 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATAATAGATAGTAAA+TGG | 0.189787 | tig0014543:+99617 | Msa1354340:CDS |
| AACTCTCAAGTACGGTTCTA+AGG | 0.265886 | tig0014543:+102011 | Msa1354340:CDS |
| GATTGACTAATCCTTTATAT+TGG | 0.284280 | tig0014543:-99597 | None:intergenic |
| CTTGATCCATTCCAATATAA+AGG | 0.291752 | tig0014543:+99586 | Msa1354340:CDS |
| CTGTTCTCCGCGGTCGGAAT+AGG | 0.311511 | tig0014543:-102049 | None:intergenic |
| GAAAATCTCACGTACGGTTC+TGG | 0.341218 | tig0014543:+101029 | Msa1354340:CDS |
| CTTAAATACGTTCGTATCGC+TGG | 0.342652 | tig0014543:+99286 | Msa1354340:CDS |
| AAGTATATAACTTCGATCAT+AGG | 0.346543 | tig0014543:-101165 | None:intergenic |
| ACAATTACTTGAAATGCGTT+TGG | 0.359489 | tig0014543:+99342 | Msa1354340:CDS |
| ATTCTGAAATTGCGGAATCT+TGG | 0.383817 | tig0014543:+102088 | Msa1354340:CDS |
| CTATTCCGACCGCGGAGAAC+AGG | 0.412079 | tig0014543:+102050 | Msa1354340:CDS |
| GTTTATCATTATACACATAA+AGG | 0.417721 | tig0014543:+100990 | Msa1354340:CDS |
| CGGAGAACAGGCCATTCGAC+AGG | 0.449760 | tig0014543:+102062 | Msa1354340:CDS |
| ATGGATTGGCAATTCTTCGC+GGG | 0.450528 | tig0014543:-99557 | None:intergenic |
| AGCTTTACAGAATTATTATG+AGG | 0.461055 | tig0014543:+101121 | Msa1354340:CDS |
| TACCAGGACTAACTAGTAAA+CGG | 0.463029 | tig0014543:+99143 | Msa1354340:CDS |
| TGAGGTTTGCAACGATAACT+TGG | 0.468099 | tig0014543:-99466 | None:intergenic |
| ACTAATCCTTTATATTGGAA+TGG | 0.475526 | tig0014543:-99592 | None:intergenic |
| GTCTGTGGTTAACTAATTGA+CGG | 0.477609 | tig0014543:-99411 | None:intergenic |
| CATCCGTTACGGTCGTCATT+CGG | 0.486830 | tig0014543:-101069 | None:intergenic |
| TCAAATAATAGATAGTAAAT+GGG | 0.487910 | tig0014543:+99618 | Msa1354340:CDS |
| GATTGAGCCGACATCCGTTA+CGG | 0.491885 | tig0014543:-101080 | None:intergenic |
| AGTATATAACTTCGATCATA+GGG | 0.493981 | tig0014543:-101164 | None:intergenic |
| CTAAGTTCGCTTCCAACTGT+AGG | 0.508663 | tig0014543:-99166 | None:intergenic |
| GGATCAAGAGTCAAATGGAT+TGG | 0.511159 | tig0014543:-99571 | None:intergenic |
| GGAAAAGCGAAAGGTTCAAC+CGG | 0.516182 | tig0014543:+99307 | Msa1354340:CDS |
| TCTGTGGTTAACTAATTGAC+GGG | 0.521261 | tig0014543:-99410 | None:intergenic |
| GGCCGTTTACTAGTTAGTCC+TGG | 0.527000 | tig0014543:-99145 | None:intergenic |
| TTATTATGAGGCTATGCGAC+TGG | 0.531177 | tig0014543:+101133 | Msa1354340:CDS |
| ACTCTCAAGTACGGTTCTAA+GGG | 0.543497 | tig0014543:+102012 | Msa1354340:CDS |
| AATGGATTGGCAATTCTTCG+CGG | 0.545268 | tig0014543:-99558 | None:intergenic |
| AATGGCCTGTTCTCCGCGGT+CGG | 0.545774 | tig0014543:-102055 | None:intergenic |
| GAACCGAATGACGACCGTAA+CGG | 0.551395 | tig0014543:+101066 | Msa1354340:CDS |
| ATTCTCATTATCAACGTAGC+GGG | 0.554602 | tig0014543:-100935 | None:intergenic |
| TCAAGATATTATTACAGCGA+AGG | 0.559737 | tig0014543:+99486 | Msa1354340:CDS |
| TTCGCTGTAATAATATCTTG+AGG | 0.560954 | tig0014543:-99484 | None:intergenic |
| TTCAGAATCTCCCTGTCGAA+TGG | 0.562027 | tig0014543:-102073 | None:intergenic |
| TGTATAATGATAAACATCCA+TGG | 0.566710 | tig0014543:-100982 | None:intergenic |
| TAATTGTAGTAAAACTTGAC+CGG | 0.568250 | tig0014543:-99326 | None:intergenic |
| ACTAGTAAACGGCCTACAGT+TGG | 0.568372 | tig0014543:+99154 | Msa1354340:CDS |
| CGGATGTCGGCTCAATCTGA+AGG | 0.568829 | tig0014543:+101086 | Msa1354340:CDS |
| CAAGATATTATTACAGCGAA+GGG | 0.569002 | tig0014543:+99487 | Msa1354340:CDS |
| TTAACTAATTGACGGGCTTG+AGG | 0.581554 | tig0014543:-99403 | None:intergenic |
| GGAATGGATCAAGAGTCAAA+TGG | 0.582974 | tig0014543:-99576 | None:intergenic |
| GATTGGCAATTCTTCGCGGG+GGG | 0.584547 | tig0014543:-99554 | None:intergenic |
| AGTCAGGAAACTCTCAAGTA+CGG | 0.591143 | tig0014543:+102003 | Msa1354340:intron |
| ACAGGGAGATTCTGAAATTG+CGG | 0.592934 | tig0014543:+102080 | Msa1354340:CDS |
| ATGACGACCGTAACGGATGT+CGG | 0.595117 | tig0014543:+101073 | Msa1354340:CDS |
| TAGCTTGTTTCAATATTCAG+CGG | 0.600474 | tig0014543:-102121 | None:intergenic |
| TCAAGTACGGTTCTAAGGGA+AGG | 0.605491 | tig0014543:+102016 | Msa1354340:CDS |
| TGGATTGGCAATTCTTCGCG+GGG | 0.610754 | tig0014543:-99556 | None:intergenic |
| TCTCACGTACGGTTCTGGAA+CGG | 0.613778 | tig0014543:+101034 | Msa1354340:CDS |
| GGAGAACAGGCCATTCGACA+GGG | 0.615464 | tig0014543:+102063 | Msa1354340:CDS |
| TGAGATGAAAATCTCACGTA+CGG | 0.620113 | tig0014543:+101023 | Msa1354340:CDS |
| TATCATTATACACATAAAGG+AGG | 0.625043 | tig0014543:+100993 | Msa1354340:CDS |
| TGTTTATGTCACGTTACAGA+GGG | 0.632465 | tig0014543:+99086 | None:intergenic |
| GTGTTTATGTCACGTTACAG+AGG | 0.633128 | tig0014543:+99085 | None:intergenic |
| CGTATCGCTGGAAAAGCGAA+AGG | 0.633501 | tig0014543:+99298 | Msa1354340:CDS |
| GTCGAATGGCCTGTTCTCCG+CGG | 0.644787 | tig0014543:-102059 | None:intergenic |
| TTACTCACCTATTCCGACCG+CGG | 0.663047 | tig0014543:+102042 | Msa1354340:CDS |
| CATTAACTAAAACATGTCTG+TGG | 0.663264 | tig0014543:-99426 | None:intergenic |
| TCAATCTGAAGGAAATTATG+CGG | 0.666729 | tig0014543:+101097 | Msa1354340:CDS |
| GGATTGGCAATTCTTCGCGG+GGG | 0.681198 | tig0014543:-99555 | None:intergenic |
| TATTCTCATTATCAACGTAG+CGG | 0.690136 | tig0014543:-100936 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCAAATAATTTTATCTTA+CGG | - | tig0014543:100117-100136 | None:intergenic | 10.0% |
| !!! | TATTTTTTTATTAGTATTAG+TGG | - | tig0014543:101365-101384 | None:intergenic | 10.0% |
| !! | ATCAAATAATAGATAGTAAA+TGG | + | tig0014543:99617-99636 | Msa1354340:CDS | 15.0% |
| !! | TCAAATAATAGATAGTAAAT+GGG | + | tig0014543:99618-99637 | Msa1354340:CDS | 15.0% |
| !!! | TAAACAATGAAATTTTAGAA+TGG | + | tig0014543:100220-100239 | Msa1354340:intron | 15.0% |
| !! | AATTATTCGTAATAAGATAT+TGG | - | tig0014543:100311-100330 | None:intergenic | 15.0% |
| !! | AGTTATATACTTTATAACAT+AGG | + | tig0014543:101176-101195 | Msa1354340:intron | 15.0% |
| !! | TAAATACTAGACAAAAAAAT+AGG | + | tig0014543:101383-101402 | Msa1354340:intron | 15.0% |
| !! | AAAGATAAAACTAAAAACAA+AGG | + | tig0014543:101868-101887 | Msa1354340:intron | 15.0% |
| !! | TTTGAAAATTAATGAATTGC+TGG | + | tig0014543:99645-99664 | Msa1354340:intron | 20.0% |
| !! | TTCTGTAATAAACAAAATAG+TGG | - | tig0014543:99805-99824 | None:intergenic | 20.0% |
| !! | GTTTATTACAGAAAGAAATT+AGG | + | tig0014543:99812-99831 | Msa1354340:intron | 20.0% |
| !! | GTTTATCATTATACACATAA+AGG | + | tig0014543:100990-101009 | Msa1354340:CDS | 20.0% |
| !!! | TCTTTTCTTTTTTTCTATAG+TGG | - | tig0014543:101332-101351 | None:intergenic | 20.0% |
| !! | ATAAAAGATCTAATTGATAG+AGG | + | tig0014543:101529-101548 | Msa1354340:intron | 20.0% |
| !! | TACTTATATGATGATAGATT+AGG | + | tig0014543:101606-101625 | Msa1354340:intron | 20.0% |
| !! | AATCTACTTATGTAATAAAG+TGG | + | tig0014543:101629-101648 | Msa1354340:intron | 20.0% |
| !!! | TCTTATTGAAATTTTCTGAA+AGG | - | tig0014543:101800-101819 | None:intergenic | 20.0% |
| !!! | TTTTATCTTCCATTTTTTTC+TGG | - | tig0014543:101960-101979 | None:intergenic | 20.0% |
| !! | CAAAAATTGCGTTTTCATTA+TGG | + | tig0014543:99244-99263 | Msa1354340:CDS | 25.0% |
| ! | TAATTGTAGTAAAACTTGAC+CGG | - | tig0014543:99329-99348 | None:intergenic | 25.0% |
| !!! | GATAACATACTTTTTCGATT+GGG | + | tig0014543:99364-99383 | Msa1354340:CDS | 25.0% |
| ! | ACTAATCCTTTATATTGGAA+TGG | - | tig0014543:99595-99614 | None:intergenic | 25.0% |
| ! | GATTGACTAATCCTTTATAT+TGG | - | tig0014543:99600-99619 | None:intergenic | 25.0% |
| ! | ATAATAGATAGTAAATGGGT+TGG | + | tig0014543:99622-99641 | Msa1354340:intron | 25.0% |
| !!! | TTAAGAATAATTTTGATCCG+AGG | + | tig0014543:99716-99735 | Msa1354340:intron | 25.0% |
| !! | ACAAAATAGTGGAATAAAGT+GGG | - | tig0014543:99794-99813 | None:intergenic | 25.0% |
| !! | AACAAAATAGTGGAATAAAG+TGG | - | tig0014543:99795-99814 | None:intergenic | 25.0% |
| ! | TAACATTGATGAACTTGATA+AGG | + | tig0014543:99894-99913 | Msa1354340:intron | 25.0% |
| ! | AACATTGATGAACTTGATAA+GGG | + | tig0014543:99895-99914 | Msa1354340:intron | 25.0% |
| !! | AAATAATTTTATCTTACGGC+AGG | - | tig0014543:100113-100132 | None:intergenic | 25.0% |
| ! | AGTACGAAATAACGTAAAAA+TGG | - | tig0014543:100156-100175 | None:intergenic | 25.0% |
| ! | TATTGTACAATTCCTTTGTT+TGG | + | tig0014543:100177-100196 | Msa1354340:intron | 25.0% |
| !! | ATTGTACAATTCCTTTGTTT+GGG | + | tig0014543:100178-100197 | Msa1354340:intron | 25.0% |
| !! | TAATAAGATATTGGCTACAA+TGG | - | tig0014543:100302-100321 | None:intergenic | 25.0% |
| ! | ATAAATCCTTCCTTTCTTAT+CGG | + | tig0014543:100676-100695 | Msa1354340:intron | 25.0% |
| ! | GTATGTTATTACTGGATAAA+TGG | - | tig0014543:100852-100871 | None:intergenic | 25.0% |
| ! | AACATCAAGTATGTTATTAC+TGG | - | tig0014543:100860-100879 | None:intergenic | 25.0% |
| !! | TGAGAATATTGCAATCTTTT+TGG | + | tig0014543:100951-100970 | Msa1354340:CDS | 25.0% |
| ! | TGTATAATGATAAACATCCA+TGG | - | tig0014543:100985-101004 | None:intergenic | 25.0% |
| ! | TATCATTATACACATAAAGG+AGG | + | tig0014543:100993-101012 | Msa1354340:CDS | 25.0% |
| ! | AGCTTTACAGAATTATTATG+AGG | + | tig0014543:101121-101140 | Msa1354340:CDS | 25.0% |
| ! | AGTATATAACTTCGATCATA+GGG | - | tig0014543:101167-101186 | None:intergenic | 25.0% |
| ! | AAGTATATAACTTCGATCAT+AGG | - | tig0014543:101168-101187 | None:intergenic | 25.0% |
| !!! | AAGCTTTGGAATACTATTTT+AGG | + | tig0014543:101231-101250 | Msa1354340:intron | 25.0% |
| !!! | AGCTTTGGAATACTATTTTA+GGG | + | tig0014543:101232-101251 | Msa1354340:intron | 25.0% |
| !!! | TCCATAGAAAAAAAGTATCT+AGG | - | tig0014543:101510-101529 | None:intergenic | 25.0% |
| ! | AGAAAAGACTTACTATCTTT+GGG | - | tig0014543:101692-101711 | None:intergenic | 25.0% |
| ! | AAGAAAAGACTTACTATCTT+TGG | - | tig0014543:101693-101712 | None:intergenic | 25.0% |
| ! | ATGAGTTTCAAACTTGAATT+TGG | - | tig0014543:101908-101927 | None:intergenic | 25.0% |
| ! | TTCTTAACTCCAGAAAAAAA+TGG | + | tig0014543:101948-101967 | Msa1354340:intron | 25.0% |
| TTTCAAAAAAATACGTCGTC+TGG | + | tig0014543:99114-99133 | Msa1354340:CDS | 30.0% | |
| TTCAAAAAAATACGTCGTCT+GGG | + | tig0014543:99115-99134 | Msa1354340:CDS | 30.0% | |
| ACAATTACTTGAAATGCGTT+TGG | + | tig0014543:99342-99361 | Msa1354340:CDS | 30.0% | |
| !!! | GGATAACATACTTTTTCGAT+TGG | + | tig0014543:99363-99382 | Msa1354340:CDS | 30.0% |
| CATTAACTAAAACATGTCTG+TGG | - | tig0014543:99429-99448 | None:intergenic | 30.0% | |
| !!! | CACAGACATGTTTTAGTTAA+TGG | + | tig0014543:99427-99446 | Msa1354340:CDS | 30.0% |
| TTCGCTGTAATAATATCTTG+AGG | - | tig0014543:99487-99506 | None:intergenic | 30.0% | |
| TCAAGATATTATTACAGCGA+AGG | + | tig0014543:99486-99505 | Msa1354340:CDS | 30.0% | |
| CAAGATATTATTACAGCGAA+GGG | + | tig0014543:99487-99506 | Msa1354340:CDS | 30.0% | |
| CTTGATCCATTCCAATATAA+AGG | + | tig0014543:99586-99605 | Msa1354340:CDS | 30.0% | |
| TCATTATTCCAACTTTGATG+TGG | - | tig0014543:99848-99867 | None:intergenic | 30.0% | |
| TAATCATTATGTAGGAGAGA+TGG | - | tig0014543:100001-100020 | None:intergenic | 30.0% | |
| ! | TTGTACAATTCCTTTGTTTG+GGG | + | tig0014543:100179-100198 | Msa1354340:intron | 30.0% |
| ACCTAAAATTGAAGCATATG+AGG | - | tig0014543:100521-100540 | None:intergenic | 30.0% | |
| GGTTTATAGTATTAAGCGAA+AGG | + | tig0014543:100538-100557 | Msa1354340:intron | 30.0% | |
| AAAGGTTATACCTATACCTA+TGG | + | tig0014543:100556-100575 | Msa1354340:intron | 30.0% | |
| AAGGTTATACCTATACCTAT+GGG | + | tig0014543:100557-100576 | Msa1354340:intron | 30.0% | |
| TAAATCCTTCCTTTCTTATC+GGG | + | tig0014543:100677-100696 | Msa1354340:intron | 30.0% | |
| TATCCAAAATAAGAACGAGA+TGG | - | tig0014543:100739-100758 | None:intergenic | 30.0% | |
| GTTAATAAAAGATCCTTGAC+AGG | + | tig0014543:100877-100896 | Msa1354340:intron | 30.0% | |
| TATTCTCATTATCAACGTAG+CGG | - | tig0014543:100939-100958 | None:intergenic | 30.0% | |
| ! | TCTTTTTGGATTTGATTCCA+TGG | + | tig0014543:100965-100984 | Msa1354340:CDS | 30.0% |
| TCAATCTGAAGGAAATTATG+CGG | + | tig0014543:101097-101116 | Msa1354340:CDS | 30.0% | |
| TTAAAAGCTTGAGGTAAGAA+GGG | - | tig0014543:101272-101291 | None:intergenic | 30.0% | |
| ! | ACCTCAAGCTTTTAACAATA+TGG | + | tig0014543:101277-101296 | Msa1354340:intron | 30.0% |
| !!! | GCCTAGATACTTTTTTTCTA+TGG | + | tig0014543:101506-101525 | Msa1354340:intron | 30.0% |
| ACCTTGTGAATTGATCTTTA+CGG | - | tig0014543:101560-101579 | None:intergenic | 30.0% | |
| ! | AGATCAATTCACAAGGTTTT+TGG | + | tig0014543:101563-101582 | Msa1354340:intron | 30.0% |
| ! | AATGTCGATGCTTTATTCTT+CGG | + | tig0014543:101835-101854 | Msa1354340:intron | 30.0% |
| !!! | CGACGTATTTTTTTGAAACG+AGG | - | tig0014543:99112-99131 | None:intergenic | 35.0% |
| TCAAAAAAATACGTCGTCTG+GGG | + | tig0014543:99116-99135 | Msa1354340:CDS | 35.0% | |
| TACCAGGACTAACTAGTAAA+CGG | + | tig0014543:99143-99162 | Msa1354340:CDS | 35.0% | |
| !!! | CATACTTTTTCGATTGGGTA+TGG | + | tig0014543:99369-99388 | Msa1354340:CDS | 35.0% |
| TCTGTGGTTAACTAATTGAC+GGG | - | tig0014543:99413-99432 | None:intergenic | 35.0% | |
| GTCTGTGGTTAACTAATTGA+CGG | - | tig0014543:99414-99433 | None:intergenic | 35.0% | |
| TAGAGAATCCACATCAAAGT+TGG | + | tig0014543:99837-99856 | Msa1354340:intron | 35.0% | |
| CATACATATTCCATTTGCGT+AGG | + | tig0014543:100044-100063 | Msa1354340:intron | 35.0% | |
| GAGCAAAAAAACTTACTTCG+AGG | + | tig0014543:100087-100106 | Msa1354340:intron | 35.0% | |
| ! | TGTACAATTCCTTTGTTTGG+GGG | + | tig0014543:100180-100199 | Msa1354340:intron | 35.0% |
| TAAAAGAATCCCCCAAACAA+AGG | - | tig0014543:100192-100211 | None:intergenic | 35.0% | |
| TTTATCCGAGATCTAGTCAT+AGG | - | tig0014543:100253-100272 | None:intergenic | 35.0% | |
| ATGACTAGATCTCGGATAAA+TGG | + | tig0014543:100253-100272 | Msa1354340:intron | 35.0% | |
| ! | GATATTGGCTACAATGGTAA+AGG | - | tig0014543:100296-100315 | None:intergenic | 35.0% |
| ! | TCTTTTTCTCCAGAAGTTGT+CGG | - | tig0014543:100334-100353 | None:intergenic | 35.0% |
| GCATTCACTTATTACAGAGA+TGG | + | tig0014543:100355-100374 | Msa1354340:intron | 35.0% | |
| TTCTTTCTCTAGACTGAGAT+AGG | - | tig0014543:100404-100423 | None:intergenic | 35.0% | |
| ! | GCCTCATATGCTTCAATTTT+AGG | + | tig0014543:100517-100536 | Msa1354340:intron | 35.0% |
| AGGTTATACCTATACCTATG+GGG | + | tig0014543:100558-100577 | Msa1354340:intron | 35.0% | |
| !! | CATCCATCTCGTTCTTATTT+TGG | + | tig0014543:100733-100752 | Msa1354340:intron | 35.0% |
| ACAGTCTTCGATGGTTATAT+GGG | - | tig0014543:100762-100781 | None:intergenic | 35.0% | |
| AACAGTCTTCGATGGTTATA+TGG | - | tig0014543:100763-100782 | None:intergenic | 35.0% | |
| ACTGTTGAAGTGACTAATTC+CGG | + | tig0014543:100777-100796 | Msa1354340:intron | 35.0% | |
| ATAAAAGATCCTTGACAGGA+AGG | + | tig0014543:100881-100900 | Msa1354340:intron | 35.0% | |
| ATTCTCATTATCAACGTAGC+GGG | - | tig0014543:100938-100957 | None:intergenic | 35.0% | |
| ! | CGTGAGATTTTCATCTCATA+CGG | - | tig0014543:101021-101040 | None:intergenic | 35.0% |
| TGAGATGAAAATCTCACGTA+CGG | + | tig0014543:101023-101042 | Msa1354340:CDS | 35.0% | |
| TAAAAGCTTGAGGTAAGAAG+GGG | - | tig0014543:101271-101290 | None:intergenic | 35.0% | |
| GTTAAAAGCTTGAGGTAAGA+AGG | - | tig0014543:101273-101292 | None:intergenic | 35.0% | |
| GCCATATTGTTAAAAGCTTG+AGG | - | tig0014543:101281-101300 | None:intergenic | 35.0% | |
| ACCGTAAAGATCAATTCACA+AGG | + | tig0014543:101556-101575 | Msa1354340:intron | 35.0% | |
| ! | GTAAGCAGTTCTTGTTGTAT+CGG | - | tig0014543:101589-101608 | None:intergenic | 35.0% |
| GGAGTTAAGAACAAGAAAAG+AGG | - | tig0014543:101939-101958 | None:intergenic | 35.0% | |
| !! | ATTCTGAAATTGCGGAATCT+TGG | + | tig0014543:102088-102107 | Msa1354340:CDS | 35.0% |
| CAAAAAAATACGTCGTCTGG+GGG | + | tig0014543:99117-99136 | Msa1354340:CDS | 40.0% | |
| !!! | ATTTTTTACTCGAGCGCGAT+TGG | - | tig0014543:99195-99214 | None:intergenic | 40.0% |
| CTTAAATACGTTCGTATCGC+TGG | + | tig0014543:99286-99305 | Msa1354340:CDS | 40.0% | |
| !! | TTAACTAATTGACGGGCTTG+AGG | - | tig0014543:99406-99425 | None:intergenic | 40.0% |
| TGAGGTTTGCAACGATAACT+TGG | - | tig0014543:99469-99488 | None:intergenic | 40.0% | |
| !! | AATGGATTGGCAATTCTTCG+CGG | - | tig0014543:99561-99580 | None:intergenic | 40.0% |
| GGATCAAGAGTCAAATGGAT+TGG | - | tig0014543:99574-99593 | None:intergenic | 40.0% | |
| GGAATGGATCAAGAGTCAAA+TGG | - | tig0014543:99579-99598 | None:intergenic | 40.0% | |
| ACCCACGTCTATACATGAAT+GGG | - | tig0014543:99749-99768 | None:intergenic | 40.0% | |
| TACCCACGTCTATACATGAA+TGG | - | tig0014543:99750-99769 | None:intergenic | 40.0% | |
| TCATGTATAGACGTGGGTAT+AGG | + | tig0014543:99751-99770 | Msa1354340:intron | 40.0% | |
| ! | ATAGTGGAATAAAGTGGGCA+AGG | - | tig0014543:99789-99808 | None:intergenic | 40.0% |
| TGATGAACTTGATAAGGGTG+CGG | + | tig0014543:99900-99919 | Msa1354340:intron | 40.0% | |
| !! | GTAGGCTTTTTGTTTACCGA+GGG | - | tig0014543:99943-99962 | None:intergenic | 40.0% |
| !! | TGTAGGCTTTTTGTTTACCG+AGG | - | tig0014543:99944-99963 | None:intergenic | 40.0% |
| ! | GAGGGGCATAATCATTATGT+AGG | - | tig0014543:100009-100028 | None:intergenic | 40.0% |
| TGCTACCTATGACTAGATCT+CGG | + | tig0014543:100245-100264 | Msa1354340:intron | 40.0% | |
| CGAATAATTCCGACAACTTC+TGG | + | tig0014543:100322-100341 | Msa1354340:intron | 40.0% | |
| ! | GACAACTTCTGGAGAAAAAG+AGG | + | tig0014543:100333-100352 | Msa1354340:intron | 40.0% |
| ! | AAAAAACCTACGCTTGCTGA+AGG | + | tig0014543:100438-100457 | Msa1354340:intron | 40.0% |
| ATCGGAAATACACGACAGAA+GGG | - | tig0014543:100490-100509 | None:intergenic | 40.0% | |
| AATCGGAAATACACGACAGA+AGG | - | tig0014543:100491-100510 | None:intergenic | 40.0% | |
| GCATATGAGGCTGCATTAAT+CGG | - | tig0014543:100508-100527 | None:intergenic | 40.0% | |
| ATACCTATACCTATGGGGTT+AGG | + | tig0014543:100563-100582 | Msa1354340:intron | 40.0% | |
| TAACCTAACCCCATAGGTAT+AGG | - | tig0014543:100569-100588 | None:intergenic | 40.0% | |
| TAGGATTAACCTAACCCCAT+AGG | - | tig0014543:100575-100594 | None:intergenic | 40.0% | |
| CTGTTGAAGTGACTAATTCC+GGG | + | tig0014543:100778-100797 | Msa1354340:intron | 40.0% | |
| TTATTATGAGGCTATGCGAC+TGG | + | tig0014543:101133-101152 | Msa1354340:CDS | 40.0% | |
| ! | GGCCTTATACACACAAGTAA+CGG | + | tig0014543:101197-101216 | Msa1354340:intron | 40.0% |
| CTCCGTTACTTGTGTGTATA+AGG | - | tig0014543:101202-101221 | None:intergenic | 40.0% | |
| CGGAGAACATACAAAAGCTT+TGG | + | tig0014543:101217-101236 | Msa1354340:intron | 40.0% | |
| GTAATAAAGTGGATCCCCTA+AGG | + | tig0014543:101640-101659 | Msa1354340:intron | 40.0% | |
| ! | TCGATGCTTTATTCTTCGGA+AGG | + | tig0014543:101839-101858 | Msa1354340:intron | 40.0% |
| ! | TGCTTTATTCTTCGGAAGGT+AGG | + | tig0014543:101843-101862 | Msa1354340:intron | 40.0% |
| TGAGAGTTTCCTGACTCATA+CGG | - | tig0014543:101999-102018 | None:intergenic | 40.0% | |
| AGTCAGGAAACTCTCAAGTA+CGG | + | tig0014543:102003-102022 | Msa1354340:intron | 40.0% | |
| AACTCTCAAGTACGGTTCTA+AGG | + | tig0014543:102011-102030 | Msa1354340:CDS | 40.0% | |
| ! | ACTCTCAAGTACGGTTCTAA+GGG | + | tig0014543:102012-102031 | Msa1354340:CDS | 40.0% |
| !! | ACAGGGAGATTCTGAAATTG+CGG | + | tig0014543:102080-102099 | Msa1354340:CDS | 40.0% |
| ACTAGTAAACGGCCTACAGT+TGG | + | tig0014543:99154-99173 | Msa1354340:CDS | 45.0% | |
| CTAAGTTCGCTTCCAACTGT+AGG | - | tig0014543:99169-99188 | None:intergenic | 45.0% | |
| GGAAAAGCGAAAGGTTCAAC+CGG | + | tig0014543:99307-99326 | Msa1354340:CDS | 45.0% | |
| !! | ATGGATTGGCAATTCTTCGC+GGG | - | tig0014543:99560-99579 | None:intergenic | 45.0% |
| CATGAATGGGGGAAAATCCT+CGG | - | tig0014543:99736-99755 | None:intergenic | 45.0% | |
| CCACGTCTATACATGAATGG+GGG | - | tig0014543:99747-99766 | None:intergenic | 45.0% | |
| CCCACGTCTATACATGAATG+GGG | - | tig0014543:99748-99767 | None:intergenic | 45.0% | |
| CCCCATTCATGTATAGACGT+GGG | + | tig0014543:99745-99764 | Msa1354340:intron | 45.0% | |
| ! | TAGCACTGGAACTGCTATGT+AGG | - | tig0014543:99961-99980 | None:intergenic | 45.0% |
| ATGCCTCACTATTCACTCGA+GGG | - | tig0014543:100027-100046 | None:intergenic | 45.0% | |
| TATGCCTCACTATTCACTCG+AGG | - | tig0014543:100028-100047 | None:intergenic | 45.0% | |
| ATTATGTGCGCCTACGCAAA+TGG | - | tig0014543:100057-100076 | None:intergenic | 45.0% | |
| CCTATTGGTACTAGTGGAGT+AGG | - | tig0014543:100594-100613 | None:intergenic | 45.0% | |
| CCTACTCCACTAGTACCAAT+AGG | + | tig0014543:100591-100610 | Msa1354340:intron | 45.0% | |
| ACTCCACTAGTACCAATAGG+CGG | + | tig0014543:100594-100613 | Msa1354340:intron | 45.0% | |
| CCTTCCTTTCTTATCGGGAT+CGG | + | tig0014543:100682-100701 | Msa1354340:intron | 45.0% | |
| CTTCCTTTCTTATCGGGATC+GGG | + | tig0014543:100683-100702 | Msa1354340:intron | 45.0% | |
| TCGGGACTAACTAGAATGGT+TGG | + | tig0014543:100701-100720 | Msa1354340:intron | 45.0% | |
| CGGGACTAACTAGAATGGTT+GGG | + | tig0014543:100702-100721 | Msa1354340:intron | 45.0% | |
| GTCACTTCAACAGTCTTCGA+TGG | - | tig0014543:100771-100790 | None:intergenic | 45.0% | |
| CTCAACGCTGCTAAATTTCC+CGG | - | tig0014543:100799-100818 | None:intergenic | 45.0% | |
| AAGATCCTTGACAGGAAGGT+TGG | + | tig0014543:100885-100904 | Msa1354340:intron | 45.0% | |
| GAAAATCTCACGTACGGTTC+TGG | + | tig0014543:101029-101048 | Msa1354340:CDS | 45.0% | |
| TCGCACGTAATGACAGATCA+CGG | - | tig0014543:101303-101322 | None:intergenic | 45.0% | |
| !! | TCAAGTACGGTTCTAAGGGA+AGG | + | tig0014543:102016-102035 | Msa1354340:CDS | 45.0% |
| TTCAGAATCTCCCTGTCGAA+TGG | - | tig0014543:102076-102095 | None:intergenic | 45.0% | |
| !!! | CTTAATTTAATATTTTAATT+AGG | - | tig0014543:99701-99720 | None:intergenic | 5.0% |
| GGCCGTTTACTAGTTAGTCC+TGG | - | tig0014543:99148-99167 | None:intergenic | 50.0% | |
| CGTATCGCTGGAAAAGCGAA+AGG | + | tig0014543:99298-99317 | Msa1354340:CDS | 50.0% | |
| !! | TGGATTGGCAATTCTTCGCG+GGG | - | tig0014543:99559-99578 | None:intergenic | 50.0% |
| CCCCCATTCATGTATAGACG+TGG | + | tig0014543:99744-99763 | Msa1354340:intron | 50.0% | |
| ! | TGATAAGGGTGCGGAAAGAG+AGG | + | tig0014543:99909-99928 | Msa1354340:intron | 50.0% |
| ! | GATAAGGGTGCGGAAAGAGA+GGG | + | tig0014543:99910-99929 | Msa1354340:intron | 50.0% |
| AAGAGAGGGATTCGAACCCT+CGG | + | tig0014543:99924-99943 | Msa1354340:intron | 50.0% | |
| TGCCTCACTATTCACTCGAG+GGG | - | tig0014543:100026-100045 | None:intergenic | 50.0% | |
| ACTTCACCTTCAGCAAGCGT+AGG | - | tig0014543:100447-100466 | None:intergenic | 50.0% | |
| ! | CGCTTGCTGAAGGTGAAGTT+TGG | + | tig0014543:100448-100467 | Msa1354340:intron | 50.0% |
| ATGCCGCCTATTGGTACTAG+TGG | - | tig0014543:100600-100619 | None:intergenic | 50.0% | |
| ACTAGTACCAATAGGCGGCA+TGG | + | tig0014543:100599-100618 | Msa1354340:intron | 50.0% | |
| CTAGTACCAATAGGCGGCAT+GGG | + | tig0014543:100600-100619 | Msa1354340:intron | 50.0% | |
| TAGTACCAATAGGCGGCATG+GGG | + | tig0014543:100601-100620 | Msa1354340:intron | 50.0% | |
| CCGATCCCGATAAGAAAGGA+AGG | - | tig0014543:100685-100704 | None:intergenic | 50.0% | |
| AGTCCCGATCCCGATAAGAA+AGG | - | tig0014543:100689-100708 | None:intergenic | 50.0% | |
| GGGATCGGGACTAACTAGAA+TGG | + | tig0014543:100697-100716 | Msa1354340:intron | 50.0% | |
| CGGGAAATTTAGCAGCGTTG+AGG | + | tig0014543:100797-100816 | Msa1354340:intron | 50.0% | |
| TCTAGCCAACCTTCCTGTCA+AGG | - | tig0014543:100893-100912 | None:intergenic | 50.0% | |
| !! | TCTCACGTACGGTTCTGGAA+CGG | + | tig0014543:101034-101053 | Msa1354340:CDS | 50.0% |
| GAACCGAATGACGACCGTAA+CGG | + | tig0014543:101066-101085 | Msa1354340:CDS | 50.0% | |
| CATCCGTTACGGTCGTCATT+CGG | - | tig0014543:101072-101091 | None:intergenic | 50.0% | |
| !! | ATGACGACCGTAACGGATGT+CGG | + | tig0014543:101073-101092 | Msa1354340:CDS | 50.0% |
| GATTGAGCCGACATCCGTTA+CGG | - | tig0014543:101083-101102 | None:intergenic | 50.0% | |
| ACTGTTGAGCCGTATGAGTC+AGG | + | tig0014543:101987-102006 | Msa1354340:intron | 50.0% | |
| TTACTCACCTATTCCGACCG+CGG | + | tig0014543:102042-102061 | Msa1354340:CDS | 50.0% | |
| GATTGGCAATTCTTCGCGGG+GGG | - | tig0014543:99557-99576 | None:intergenic | 55.0% | |
| ! | GGATTGGCAATTCTTCGCGG+GGG | - | tig0014543:99558-99577 | None:intergenic | 55.0% |
| ! | AGTGGTTGAAGGCGTAGCAC+TGG | - | tig0014543:99975-99994 | None:intergenic | 55.0% |
| GTGCTACGCCTTCAACCACT+CGG | + | tig0014543:99975-99994 | Msa1354340:intron | 55.0% | |
| AGAGATGGCCGAGTGGTTGA+AGG | - | tig0014543:99986-100005 | None:intergenic | 55.0% | |
| ATGTAGGAGAGATGGCCGAG+TGG | - | tig0014543:99993-100012 | None:intergenic | 55.0% | |
| TGCCCCTCGAGTGAATAGTG+AGG | + | tig0014543:100021-100040 | Msa1354340:intron | 55.0% | |
| AGTACCAATAGGCGGCATGG+GGG | + | tig0014543:100602-100621 | Msa1354340:intron | 55.0% | |
| !! | GGGGAAGAAGCACTACGCTT+AGG | + | tig0014543:100621-100640 | Msa1354340:intron | 55.0% |
| !! | CGGATGTCGGCTCAATCTGA+AGG | + | tig0014543:101086-101105 | Msa1354340:CDS | 55.0% |
| TCCCCTAAGGTTGTGAGCAG+CGG | + | tig0014543:101653-101672 | Msa1354340:intron | 55.0% | |
| ACCGCTGCTCACAACCTTAG+GGG | - | tig0014543:101657-101676 | None:intergenic | 55.0% | |
| CACCGCTGCTCACAACCTTA+GGG | - | tig0014543:101658-101677 | None:intergenic | 55.0% | |
| ACACCGCTGCTCACAACCTT+AGG | - | tig0014543:101659-101678 | None:intergenic | 55.0% | |
| GGAGAACAGGCCATTCGACA+GGG | + | tig0014543:102063-102082 | Msa1354340:CDS | 55.0% | |
| TCTTCCCCCATGCCGCCTAT+TGG | - | tig0014543:100609-100628 | None:intergenic | 60.0% | |
| CTGTTCTCCGCGGTCGGAAT+AGG | - | tig0014543:102052-102071 | None:intergenic | 60.0% | |
| CTATTCCGACCGCGGAGAAC+AGG | + | tig0014543:102050-102069 | Msa1354340:CDS | 60.0% | |
| AATGGCCTGTTCTCCGCGGT+CGG | - | tig0014543:102058-102077 | None:intergenic | 60.0% | |
| GTCGAATGGCCTGTTCTCCG+CGG | - | tig0014543:102062-102081 | None:intergenic | 60.0% | |
| CGGAGAACAGGCCATTCGAC+AGG | + | tig0014543:102062-102081 | Msa1354340:CDS | 60.0% | |
| CGTCGTCTGGGGGCTTTACC+AGG | + | tig0014543:99127-99146 | Msa1354340:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0014543 | gene | 99091 | 102134 | 99091 | ID=Msa1354340;Name=Msa1354340 |
| tig0014543 | mRNA | 99091 | 102134 | 99091 | ID=Msa1354340-mRNA-1;Parent=Msa1354340;Name=Msa1354340-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|0.33|1|1|3|0|305 |
| tig0014543 | exon | 99091 | 99639 | 99091 | ID=Msa1354340-mRNA-1:exon:9089;Parent=Msa1354340-mRNA-1 |
| tig0014543 | exon | 100934 | 101176 | 100934 | ID=Msa1354340-mRNA-1:exon:9090;Parent=Msa1354340-mRNA-1 |
| tig0014543 | exon | 102009 | 102134 | 102009 | ID=Msa1354340-mRNA-1:exon:9091;Parent=Msa1354340-mRNA-1 |
| tig0014543 | CDS | 99091 | 99639 | 99091 | ID=Msa1354340-mRNA-1:cds;Parent=Msa1354340-mRNA-1 |
| tig0014543 | CDS | 100934 | 101176 | 100934 | ID=Msa1354340-mRNA-1:cds;Parent=Msa1354340-mRNA-1 |
| tig0014543 | CDS | 102009 | 102134 | 102009 | ID=Msa1354340-mRNA-1:cds;Parent=Msa1354340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
