AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1354340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354340 MtrunA17_Chr7g0229301 92.784 194 14 0 1 194 1 194 4.99e-128 363
Msa1354340 MtrunA17_Chr6g0454441 92.784 194 14 0 1 194 1 194 4.99e-128 363
Msa1354340 MtrunA17_Chr4g0016451 92.784 194 14 0 1 194 1 194 4.99e-128 363
Msa1354340 MtrunA17_Chr6g0466281 92.784 194 14 0 1 194 1 194 4.99e-128 363
Msa1354340 MtrunA17_CPg0493311 92.784 194 14 0 1 194 1 194 4.99e-128 363
Msa1354340 MtrunA17_Chr4g0015291 97.436 156 4 0 1 156 1 156 2.28e-106 306
Msa1354340 MtrunA17_Chr7g0229661 79.897 194 20 1 1 194 1 175 2.90e-101 295
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354340 ATCG00380.1 82.990 194 33 0 1 194 1 194 4.53e-111 320

Find 64 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAAATAATAGATAGTAAA+TGG 0.189787 tig0014543:+99617 Msa1354340:CDS
AACTCTCAAGTACGGTTCTA+AGG 0.265886 tig0014543:+102011 Msa1354340:CDS
GATTGACTAATCCTTTATAT+TGG 0.284280 tig0014543:-99597 None:intergenic
CTTGATCCATTCCAATATAA+AGG 0.291752 tig0014543:+99586 Msa1354340:CDS
CTGTTCTCCGCGGTCGGAAT+AGG 0.311511 tig0014543:-102049 None:intergenic
GAAAATCTCACGTACGGTTC+TGG 0.341218 tig0014543:+101029 Msa1354340:CDS
CTTAAATACGTTCGTATCGC+TGG 0.342652 tig0014543:+99286 Msa1354340:CDS
AAGTATATAACTTCGATCAT+AGG 0.346543 tig0014543:-101165 None:intergenic
ACAATTACTTGAAATGCGTT+TGG 0.359489 tig0014543:+99342 Msa1354340:CDS
ATTCTGAAATTGCGGAATCT+TGG 0.383817 tig0014543:+102088 Msa1354340:CDS
CTATTCCGACCGCGGAGAAC+AGG 0.412079 tig0014543:+102050 Msa1354340:CDS
GTTTATCATTATACACATAA+AGG 0.417721 tig0014543:+100990 Msa1354340:CDS
CGGAGAACAGGCCATTCGAC+AGG 0.449760 tig0014543:+102062 Msa1354340:CDS
ATGGATTGGCAATTCTTCGC+GGG 0.450528 tig0014543:-99557 None:intergenic
AGCTTTACAGAATTATTATG+AGG 0.461055 tig0014543:+101121 Msa1354340:CDS
TACCAGGACTAACTAGTAAA+CGG 0.463029 tig0014543:+99143 Msa1354340:CDS
TGAGGTTTGCAACGATAACT+TGG 0.468099 tig0014543:-99466 None:intergenic
ACTAATCCTTTATATTGGAA+TGG 0.475526 tig0014543:-99592 None:intergenic
GTCTGTGGTTAACTAATTGA+CGG 0.477609 tig0014543:-99411 None:intergenic
CATCCGTTACGGTCGTCATT+CGG 0.486830 tig0014543:-101069 None:intergenic
TCAAATAATAGATAGTAAAT+GGG 0.487910 tig0014543:+99618 Msa1354340:CDS
GATTGAGCCGACATCCGTTA+CGG 0.491885 tig0014543:-101080 None:intergenic
AGTATATAACTTCGATCATA+GGG 0.493981 tig0014543:-101164 None:intergenic
CTAAGTTCGCTTCCAACTGT+AGG 0.508663 tig0014543:-99166 None:intergenic
GGATCAAGAGTCAAATGGAT+TGG 0.511159 tig0014543:-99571 None:intergenic
GGAAAAGCGAAAGGTTCAAC+CGG 0.516182 tig0014543:+99307 Msa1354340:CDS
TCTGTGGTTAACTAATTGAC+GGG 0.521261 tig0014543:-99410 None:intergenic
GGCCGTTTACTAGTTAGTCC+TGG 0.527000 tig0014543:-99145 None:intergenic
TTATTATGAGGCTATGCGAC+TGG 0.531177 tig0014543:+101133 Msa1354340:CDS
ACTCTCAAGTACGGTTCTAA+GGG 0.543497 tig0014543:+102012 Msa1354340:CDS
AATGGATTGGCAATTCTTCG+CGG 0.545268 tig0014543:-99558 None:intergenic
AATGGCCTGTTCTCCGCGGT+CGG 0.545774 tig0014543:-102055 None:intergenic
GAACCGAATGACGACCGTAA+CGG 0.551395 tig0014543:+101066 Msa1354340:CDS
ATTCTCATTATCAACGTAGC+GGG 0.554602 tig0014543:-100935 None:intergenic
TCAAGATATTATTACAGCGA+AGG 0.559737 tig0014543:+99486 Msa1354340:CDS
TTCGCTGTAATAATATCTTG+AGG 0.560954 tig0014543:-99484 None:intergenic
TTCAGAATCTCCCTGTCGAA+TGG 0.562027 tig0014543:-102073 None:intergenic
TGTATAATGATAAACATCCA+TGG 0.566710 tig0014543:-100982 None:intergenic
TAATTGTAGTAAAACTTGAC+CGG 0.568250 tig0014543:-99326 None:intergenic
ACTAGTAAACGGCCTACAGT+TGG 0.568372 tig0014543:+99154 Msa1354340:CDS
CGGATGTCGGCTCAATCTGA+AGG 0.568829 tig0014543:+101086 Msa1354340:CDS
CAAGATATTATTACAGCGAA+GGG 0.569002 tig0014543:+99487 Msa1354340:CDS
TTAACTAATTGACGGGCTTG+AGG 0.581554 tig0014543:-99403 None:intergenic
GGAATGGATCAAGAGTCAAA+TGG 0.582974 tig0014543:-99576 None:intergenic
GATTGGCAATTCTTCGCGGG+GGG 0.584547 tig0014543:-99554 None:intergenic
AGTCAGGAAACTCTCAAGTA+CGG 0.591143 tig0014543:+102003 Msa1354340:intron
ACAGGGAGATTCTGAAATTG+CGG 0.592934 tig0014543:+102080 Msa1354340:CDS
ATGACGACCGTAACGGATGT+CGG 0.595117 tig0014543:+101073 Msa1354340:CDS
TAGCTTGTTTCAATATTCAG+CGG 0.600474 tig0014543:-102121 None:intergenic
TCAAGTACGGTTCTAAGGGA+AGG 0.605491 tig0014543:+102016 Msa1354340:CDS
TGGATTGGCAATTCTTCGCG+GGG 0.610754 tig0014543:-99556 None:intergenic
TCTCACGTACGGTTCTGGAA+CGG 0.613778 tig0014543:+101034 Msa1354340:CDS
GGAGAACAGGCCATTCGACA+GGG 0.615464 tig0014543:+102063 Msa1354340:CDS
TGAGATGAAAATCTCACGTA+CGG 0.620113 tig0014543:+101023 Msa1354340:CDS
TATCATTATACACATAAAGG+AGG 0.625043 tig0014543:+100993 Msa1354340:CDS
TGTTTATGTCACGTTACAGA+GGG 0.632465 tig0014543:+99086 None:intergenic
GTGTTTATGTCACGTTACAG+AGG 0.633128 tig0014543:+99085 None:intergenic
CGTATCGCTGGAAAAGCGAA+AGG 0.633501 tig0014543:+99298 Msa1354340:CDS
GTCGAATGGCCTGTTCTCCG+CGG 0.644787 tig0014543:-102059 None:intergenic
TTACTCACCTATTCCGACCG+CGG 0.663047 tig0014543:+102042 Msa1354340:CDS
CATTAACTAAAACATGTCTG+TGG 0.663264 tig0014543:-99426 None:intergenic
TCAATCTGAAGGAAATTATG+CGG 0.666729 tig0014543:+101097 Msa1354340:CDS
GGATTGGCAATTCTTCGCGG+GGG 0.681198 tig0014543:-99555 None:intergenic
TATTCTCATTATCAACGTAG+CGG 0.690136 tig0014543:-100936 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCAAATAATTTTATCTTA+CGG - tig0014543:100117-100136 None:intergenic 10.0%
!!! TATTTTTTTATTAGTATTAG+TGG - tig0014543:101365-101384 None:intergenic 10.0%
!! ATCAAATAATAGATAGTAAA+TGG + tig0014543:99617-99636 Msa1354340:CDS 15.0%
!! TCAAATAATAGATAGTAAAT+GGG + tig0014543:99618-99637 Msa1354340:CDS 15.0%
!!! TAAACAATGAAATTTTAGAA+TGG + tig0014543:100220-100239 Msa1354340:intron 15.0%
!! AATTATTCGTAATAAGATAT+TGG - tig0014543:100311-100330 None:intergenic 15.0%
!! AGTTATATACTTTATAACAT+AGG + tig0014543:101176-101195 Msa1354340:intron 15.0%
!! TAAATACTAGACAAAAAAAT+AGG + tig0014543:101383-101402 Msa1354340:intron 15.0%
!! AAAGATAAAACTAAAAACAA+AGG + tig0014543:101868-101887 Msa1354340:intron 15.0%
!! TTTGAAAATTAATGAATTGC+TGG + tig0014543:99645-99664 Msa1354340:intron 20.0%
!! TTCTGTAATAAACAAAATAG+TGG - tig0014543:99805-99824 None:intergenic 20.0%
!! GTTTATTACAGAAAGAAATT+AGG + tig0014543:99812-99831 Msa1354340:intron 20.0%
!! GTTTATCATTATACACATAA+AGG + tig0014543:100990-101009 Msa1354340:CDS 20.0%
!!! TCTTTTCTTTTTTTCTATAG+TGG - tig0014543:101332-101351 None:intergenic 20.0%
!! ATAAAAGATCTAATTGATAG+AGG + tig0014543:101529-101548 Msa1354340:intron 20.0%
!! TACTTATATGATGATAGATT+AGG + tig0014543:101606-101625 Msa1354340:intron 20.0%
!! AATCTACTTATGTAATAAAG+TGG + tig0014543:101629-101648 Msa1354340:intron 20.0%
!!! TCTTATTGAAATTTTCTGAA+AGG - tig0014543:101800-101819 None:intergenic 20.0%
!!! TTTTATCTTCCATTTTTTTC+TGG - tig0014543:101960-101979 None:intergenic 20.0%
!! CAAAAATTGCGTTTTCATTA+TGG + tig0014543:99244-99263 Msa1354340:CDS 25.0%
! TAATTGTAGTAAAACTTGAC+CGG - tig0014543:99329-99348 None:intergenic 25.0%
!!! GATAACATACTTTTTCGATT+GGG + tig0014543:99364-99383 Msa1354340:CDS 25.0%
! ACTAATCCTTTATATTGGAA+TGG - tig0014543:99595-99614 None:intergenic 25.0%
! GATTGACTAATCCTTTATAT+TGG - tig0014543:99600-99619 None:intergenic 25.0%
! ATAATAGATAGTAAATGGGT+TGG + tig0014543:99622-99641 Msa1354340:intron 25.0%
!!! TTAAGAATAATTTTGATCCG+AGG + tig0014543:99716-99735 Msa1354340:intron 25.0%
!! ACAAAATAGTGGAATAAAGT+GGG - tig0014543:99794-99813 None:intergenic 25.0%
!! AACAAAATAGTGGAATAAAG+TGG - tig0014543:99795-99814 None:intergenic 25.0%
! TAACATTGATGAACTTGATA+AGG + tig0014543:99894-99913 Msa1354340:intron 25.0%
! AACATTGATGAACTTGATAA+GGG + tig0014543:99895-99914 Msa1354340:intron 25.0%
!! AAATAATTTTATCTTACGGC+AGG - tig0014543:100113-100132 None:intergenic 25.0%
! AGTACGAAATAACGTAAAAA+TGG - tig0014543:100156-100175 None:intergenic 25.0%
! TATTGTACAATTCCTTTGTT+TGG + tig0014543:100177-100196 Msa1354340:intron 25.0%
!! ATTGTACAATTCCTTTGTTT+GGG + tig0014543:100178-100197 Msa1354340:intron 25.0%
!! TAATAAGATATTGGCTACAA+TGG - tig0014543:100302-100321 None:intergenic 25.0%
! ATAAATCCTTCCTTTCTTAT+CGG + tig0014543:100676-100695 Msa1354340:intron 25.0%
! GTATGTTATTACTGGATAAA+TGG - tig0014543:100852-100871 None:intergenic 25.0%
! AACATCAAGTATGTTATTAC+TGG - tig0014543:100860-100879 None:intergenic 25.0%
!! TGAGAATATTGCAATCTTTT+TGG + tig0014543:100951-100970 Msa1354340:CDS 25.0%
! TGTATAATGATAAACATCCA+TGG - tig0014543:100985-101004 None:intergenic 25.0%
! TATCATTATACACATAAAGG+AGG + tig0014543:100993-101012 Msa1354340:CDS 25.0%
! AGCTTTACAGAATTATTATG+AGG + tig0014543:101121-101140 Msa1354340:CDS 25.0%
! AGTATATAACTTCGATCATA+GGG - tig0014543:101167-101186 None:intergenic 25.0%
! AAGTATATAACTTCGATCAT+AGG - tig0014543:101168-101187 None:intergenic 25.0%
!!! AAGCTTTGGAATACTATTTT+AGG + tig0014543:101231-101250 Msa1354340:intron 25.0%
!!! AGCTTTGGAATACTATTTTA+GGG + tig0014543:101232-101251 Msa1354340:intron 25.0%
!!! TCCATAGAAAAAAAGTATCT+AGG - tig0014543:101510-101529 None:intergenic 25.0%
! AGAAAAGACTTACTATCTTT+GGG - tig0014543:101692-101711 None:intergenic 25.0%
! AAGAAAAGACTTACTATCTT+TGG - tig0014543:101693-101712 None:intergenic 25.0%
! ATGAGTTTCAAACTTGAATT+TGG - tig0014543:101908-101927 None:intergenic 25.0%
! TTCTTAACTCCAGAAAAAAA+TGG + tig0014543:101948-101967 Msa1354340:intron 25.0%
TTTCAAAAAAATACGTCGTC+TGG + tig0014543:99114-99133 Msa1354340:CDS 30.0%
TTCAAAAAAATACGTCGTCT+GGG + tig0014543:99115-99134 Msa1354340:CDS 30.0%
ACAATTACTTGAAATGCGTT+TGG + tig0014543:99342-99361 Msa1354340:CDS 30.0%
!!! GGATAACATACTTTTTCGAT+TGG + tig0014543:99363-99382 Msa1354340:CDS 30.0%
CATTAACTAAAACATGTCTG+TGG - tig0014543:99429-99448 None:intergenic 30.0%
!!! CACAGACATGTTTTAGTTAA+TGG + tig0014543:99427-99446 Msa1354340:CDS 30.0%
TTCGCTGTAATAATATCTTG+AGG - tig0014543:99487-99506 None:intergenic 30.0%
TCAAGATATTATTACAGCGA+AGG + tig0014543:99486-99505 Msa1354340:CDS 30.0%
CAAGATATTATTACAGCGAA+GGG + tig0014543:99487-99506 Msa1354340:CDS 30.0%
CTTGATCCATTCCAATATAA+AGG + tig0014543:99586-99605 Msa1354340:CDS 30.0%
TCATTATTCCAACTTTGATG+TGG - tig0014543:99848-99867 None:intergenic 30.0%
TAATCATTATGTAGGAGAGA+TGG - tig0014543:100001-100020 None:intergenic 30.0%
! TTGTACAATTCCTTTGTTTG+GGG + tig0014543:100179-100198 Msa1354340:intron 30.0%
ACCTAAAATTGAAGCATATG+AGG - tig0014543:100521-100540 None:intergenic 30.0%
GGTTTATAGTATTAAGCGAA+AGG + tig0014543:100538-100557 Msa1354340:intron 30.0%
AAAGGTTATACCTATACCTA+TGG + tig0014543:100556-100575 Msa1354340:intron 30.0%
AAGGTTATACCTATACCTAT+GGG + tig0014543:100557-100576 Msa1354340:intron 30.0%
TAAATCCTTCCTTTCTTATC+GGG + tig0014543:100677-100696 Msa1354340:intron 30.0%
TATCCAAAATAAGAACGAGA+TGG - tig0014543:100739-100758 None:intergenic 30.0%
GTTAATAAAAGATCCTTGAC+AGG + tig0014543:100877-100896 Msa1354340:intron 30.0%
TATTCTCATTATCAACGTAG+CGG - tig0014543:100939-100958 None:intergenic 30.0%
! TCTTTTTGGATTTGATTCCA+TGG + tig0014543:100965-100984 Msa1354340:CDS 30.0%
TCAATCTGAAGGAAATTATG+CGG + tig0014543:101097-101116 Msa1354340:CDS 30.0%
TTAAAAGCTTGAGGTAAGAA+GGG - tig0014543:101272-101291 None:intergenic 30.0%
! ACCTCAAGCTTTTAACAATA+TGG + tig0014543:101277-101296 Msa1354340:intron 30.0%
!!! GCCTAGATACTTTTTTTCTA+TGG + tig0014543:101506-101525 Msa1354340:intron 30.0%
ACCTTGTGAATTGATCTTTA+CGG - tig0014543:101560-101579 None:intergenic 30.0%
! AGATCAATTCACAAGGTTTT+TGG + tig0014543:101563-101582 Msa1354340:intron 30.0%
! AATGTCGATGCTTTATTCTT+CGG + tig0014543:101835-101854 Msa1354340:intron 30.0%
!!! CGACGTATTTTTTTGAAACG+AGG - tig0014543:99112-99131 None:intergenic 35.0%
TCAAAAAAATACGTCGTCTG+GGG + tig0014543:99116-99135 Msa1354340:CDS 35.0%
TACCAGGACTAACTAGTAAA+CGG + tig0014543:99143-99162 Msa1354340:CDS 35.0%
!!! CATACTTTTTCGATTGGGTA+TGG + tig0014543:99369-99388 Msa1354340:CDS 35.0%
TCTGTGGTTAACTAATTGAC+GGG - tig0014543:99413-99432 None:intergenic 35.0%
GTCTGTGGTTAACTAATTGA+CGG - tig0014543:99414-99433 None:intergenic 35.0%
TAGAGAATCCACATCAAAGT+TGG + tig0014543:99837-99856 Msa1354340:intron 35.0%
CATACATATTCCATTTGCGT+AGG + tig0014543:100044-100063 Msa1354340:intron 35.0%
GAGCAAAAAAACTTACTTCG+AGG + tig0014543:100087-100106 Msa1354340:intron 35.0%
! TGTACAATTCCTTTGTTTGG+GGG + tig0014543:100180-100199 Msa1354340:intron 35.0%
TAAAAGAATCCCCCAAACAA+AGG - tig0014543:100192-100211 None:intergenic 35.0%
TTTATCCGAGATCTAGTCAT+AGG - tig0014543:100253-100272 None:intergenic 35.0%
ATGACTAGATCTCGGATAAA+TGG + tig0014543:100253-100272 Msa1354340:intron 35.0%
! GATATTGGCTACAATGGTAA+AGG - tig0014543:100296-100315 None:intergenic 35.0%
! TCTTTTTCTCCAGAAGTTGT+CGG - tig0014543:100334-100353 None:intergenic 35.0%
GCATTCACTTATTACAGAGA+TGG + tig0014543:100355-100374 Msa1354340:intron 35.0%
TTCTTTCTCTAGACTGAGAT+AGG - tig0014543:100404-100423 None:intergenic 35.0%
! GCCTCATATGCTTCAATTTT+AGG + tig0014543:100517-100536 Msa1354340:intron 35.0%
AGGTTATACCTATACCTATG+GGG + tig0014543:100558-100577 Msa1354340:intron 35.0%
!! CATCCATCTCGTTCTTATTT+TGG + tig0014543:100733-100752 Msa1354340:intron 35.0%
ACAGTCTTCGATGGTTATAT+GGG - tig0014543:100762-100781 None:intergenic 35.0%
AACAGTCTTCGATGGTTATA+TGG - tig0014543:100763-100782 None:intergenic 35.0%
ACTGTTGAAGTGACTAATTC+CGG + tig0014543:100777-100796 Msa1354340:intron 35.0%
ATAAAAGATCCTTGACAGGA+AGG + tig0014543:100881-100900 Msa1354340:intron 35.0%
ATTCTCATTATCAACGTAGC+GGG - tig0014543:100938-100957 None:intergenic 35.0%
! CGTGAGATTTTCATCTCATA+CGG - tig0014543:101021-101040 None:intergenic 35.0%
TGAGATGAAAATCTCACGTA+CGG + tig0014543:101023-101042 Msa1354340:CDS 35.0%
TAAAAGCTTGAGGTAAGAAG+GGG - tig0014543:101271-101290 None:intergenic 35.0%
GTTAAAAGCTTGAGGTAAGA+AGG - tig0014543:101273-101292 None:intergenic 35.0%
GCCATATTGTTAAAAGCTTG+AGG - tig0014543:101281-101300 None:intergenic 35.0%
ACCGTAAAGATCAATTCACA+AGG + tig0014543:101556-101575 Msa1354340:intron 35.0%
! GTAAGCAGTTCTTGTTGTAT+CGG - tig0014543:101589-101608 None:intergenic 35.0%
GGAGTTAAGAACAAGAAAAG+AGG - tig0014543:101939-101958 None:intergenic 35.0%
!! ATTCTGAAATTGCGGAATCT+TGG + tig0014543:102088-102107 Msa1354340:CDS 35.0%
CAAAAAAATACGTCGTCTGG+GGG + tig0014543:99117-99136 Msa1354340:CDS 40.0%
!!! ATTTTTTACTCGAGCGCGAT+TGG - tig0014543:99195-99214 None:intergenic 40.0%
CTTAAATACGTTCGTATCGC+TGG + tig0014543:99286-99305 Msa1354340:CDS 40.0%
!! TTAACTAATTGACGGGCTTG+AGG - tig0014543:99406-99425 None:intergenic 40.0%
TGAGGTTTGCAACGATAACT+TGG - tig0014543:99469-99488 None:intergenic 40.0%
!! AATGGATTGGCAATTCTTCG+CGG - tig0014543:99561-99580 None:intergenic 40.0%
GGATCAAGAGTCAAATGGAT+TGG - tig0014543:99574-99593 None:intergenic 40.0%
GGAATGGATCAAGAGTCAAA+TGG - tig0014543:99579-99598 None:intergenic 40.0%
ACCCACGTCTATACATGAAT+GGG - tig0014543:99749-99768 None:intergenic 40.0%
TACCCACGTCTATACATGAA+TGG - tig0014543:99750-99769 None:intergenic 40.0%
TCATGTATAGACGTGGGTAT+AGG + tig0014543:99751-99770 Msa1354340:intron 40.0%
! ATAGTGGAATAAAGTGGGCA+AGG - tig0014543:99789-99808 None:intergenic 40.0%
TGATGAACTTGATAAGGGTG+CGG + tig0014543:99900-99919 Msa1354340:intron 40.0%
!! GTAGGCTTTTTGTTTACCGA+GGG - tig0014543:99943-99962 None:intergenic 40.0%
!! TGTAGGCTTTTTGTTTACCG+AGG - tig0014543:99944-99963 None:intergenic 40.0%
! GAGGGGCATAATCATTATGT+AGG - tig0014543:100009-100028 None:intergenic 40.0%
TGCTACCTATGACTAGATCT+CGG + tig0014543:100245-100264 Msa1354340:intron 40.0%
CGAATAATTCCGACAACTTC+TGG + tig0014543:100322-100341 Msa1354340:intron 40.0%
! GACAACTTCTGGAGAAAAAG+AGG + tig0014543:100333-100352 Msa1354340:intron 40.0%
! AAAAAACCTACGCTTGCTGA+AGG + tig0014543:100438-100457 Msa1354340:intron 40.0%
ATCGGAAATACACGACAGAA+GGG - tig0014543:100490-100509 None:intergenic 40.0%
AATCGGAAATACACGACAGA+AGG - tig0014543:100491-100510 None:intergenic 40.0%
GCATATGAGGCTGCATTAAT+CGG - tig0014543:100508-100527 None:intergenic 40.0%
ATACCTATACCTATGGGGTT+AGG + tig0014543:100563-100582 Msa1354340:intron 40.0%
TAACCTAACCCCATAGGTAT+AGG - tig0014543:100569-100588 None:intergenic 40.0%
TAGGATTAACCTAACCCCAT+AGG - tig0014543:100575-100594 None:intergenic 40.0%
CTGTTGAAGTGACTAATTCC+GGG + tig0014543:100778-100797 Msa1354340:intron 40.0%
TTATTATGAGGCTATGCGAC+TGG + tig0014543:101133-101152 Msa1354340:CDS 40.0%
! GGCCTTATACACACAAGTAA+CGG + tig0014543:101197-101216 Msa1354340:intron 40.0%
CTCCGTTACTTGTGTGTATA+AGG - tig0014543:101202-101221 None:intergenic 40.0%
CGGAGAACATACAAAAGCTT+TGG + tig0014543:101217-101236 Msa1354340:intron 40.0%
GTAATAAAGTGGATCCCCTA+AGG + tig0014543:101640-101659 Msa1354340:intron 40.0%
! TCGATGCTTTATTCTTCGGA+AGG + tig0014543:101839-101858 Msa1354340:intron 40.0%
! TGCTTTATTCTTCGGAAGGT+AGG + tig0014543:101843-101862 Msa1354340:intron 40.0%
TGAGAGTTTCCTGACTCATA+CGG - tig0014543:101999-102018 None:intergenic 40.0%
AGTCAGGAAACTCTCAAGTA+CGG + tig0014543:102003-102022 Msa1354340:intron 40.0%
AACTCTCAAGTACGGTTCTA+AGG + tig0014543:102011-102030 Msa1354340:CDS 40.0%
! ACTCTCAAGTACGGTTCTAA+GGG + tig0014543:102012-102031 Msa1354340:CDS 40.0%
!! ACAGGGAGATTCTGAAATTG+CGG + tig0014543:102080-102099 Msa1354340:CDS 40.0%
ACTAGTAAACGGCCTACAGT+TGG + tig0014543:99154-99173 Msa1354340:CDS 45.0%
CTAAGTTCGCTTCCAACTGT+AGG - tig0014543:99169-99188 None:intergenic 45.0%
GGAAAAGCGAAAGGTTCAAC+CGG + tig0014543:99307-99326 Msa1354340:CDS 45.0%
!! ATGGATTGGCAATTCTTCGC+GGG - tig0014543:99560-99579 None:intergenic 45.0%
CATGAATGGGGGAAAATCCT+CGG - tig0014543:99736-99755 None:intergenic 45.0%
CCACGTCTATACATGAATGG+GGG - tig0014543:99747-99766 None:intergenic 45.0%
CCCACGTCTATACATGAATG+GGG - tig0014543:99748-99767 None:intergenic 45.0%
CCCCATTCATGTATAGACGT+GGG + tig0014543:99745-99764 Msa1354340:intron 45.0%
! TAGCACTGGAACTGCTATGT+AGG - tig0014543:99961-99980 None:intergenic 45.0%
ATGCCTCACTATTCACTCGA+GGG - tig0014543:100027-100046 None:intergenic 45.0%
TATGCCTCACTATTCACTCG+AGG - tig0014543:100028-100047 None:intergenic 45.0%
ATTATGTGCGCCTACGCAAA+TGG - tig0014543:100057-100076 None:intergenic 45.0%
CCTATTGGTACTAGTGGAGT+AGG - tig0014543:100594-100613 None:intergenic 45.0%
CCTACTCCACTAGTACCAAT+AGG + tig0014543:100591-100610 Msa1354340:intron 45.0%
ACTCCACTAGTACCAATAGG+CGG + tig0014543:100594-100613 Msa1354340:intron 45.0%
CCTTCCTTTCTTATCGGGAT+CGG + tig0014543:100682-100701 Msa1354340:intron 45.0%
CTTCCTTTCTTATCGGGATC+GGG + tig0014543:100683-100702 Msa1354340:intron 45.0%
TCGGGACTAACTAGAATGGT+TGG + tig0014543:100701-100720 Msa1354340:intron 45.0%
CGGGACTAACTAGAATGGTT+GGG + tig0014543:100702-100721 Msa1354340:intron 45.0%
GTCACTTCAACAGTCTTCGA+TGG - tig0014543:100771-100790 None:intergenic 45.0%
CTCAACGCTGCTAAATTTCC+CGG - tig0014543:100799-100818 None:intergenic 45.0%
AAGATCCTTGACAGGAAGGT+TGG + tig0014543:100885-100904 Msa1354340:intron 45.0%
GAAAATCTCACGTACGGTTC+TGG + tig0014543:101029-101048 Msa1354340:CDS 45.0%
TCGCACGTAATGACAGATCA+CGG - tig0014543:101303-101322 None:intergenic 45.0%
!! TCAAGTACGGTTCTAAGGGA+AGG + tig0014543:102016-102035 Msa1354340:CDS 45.0%
TTCAGAATCTCCCTGTCGAA+TGG - tig0014543:102076-102095 None:intergenic 45.0%
!!! CTTAATTTAATATTTTAATT+AGG - tig0014543:99701-99720 None:intergenic 5.0%
GGCCGTTTACTAGTTAGTCC+TGG - tig0014543:99148-99167 None:intergenic 50.0%
CGTATCGCTGGAAAAGCGAA+AGG + tig0014543:99298-99317 Msa1354340:CDS 50.0%
!! TGGATTGGCAATTCTTCGCG+GGG - tig0014543:99559-99578 None:intergenic 50.0%
CCCCCATTCATGTATAGACG+TGG + tig0014543:99744-99763 Msa1354340:intron 50.0%
! TGATAAGGGTGCGGAAAGAG+AGG + tig0014543:99909-99928 Msa1354340:intron 50.0%
! GATAAGGGTGCGGAAAGAGA+GGG + tig0014543:99910-99929 Msa1354340:intron 50.0%
AAGAGAGGGATTCGAACCCT+CGG + tig0014543:99924-99943 Msa1354340:intron 50.0%
TGCCTCACTATTCACTCGAG+GGG - tig0014543:100026-100045 None:intergenic 50.0%
ACTTCACCTTCAGCAAGCGT+AGG - tig0014543:100447-100466 None:intergenic 50.0%
! CGCTTGCTGAAGGTGAAGTT+TGG + tig0014543:100448-100467 Msa1354340:intron 50.0%
ATGCCGCCTATTGGTACTAG+TGG - tig0014543:100600-100619 None:intergenic 50.0%
ACTAGTACCAATAGGCGGCA+TGG + tig0014543:100599-100618 Msa1354340:intron 50.0%
CTAGTACCAATAGGCGGCAT+GGG + tig0014543:100600-100619 Msa1354340:intron 50.0%
TAGTACCAATAGGCGGCATG+GGG + tig0014543:100601-100620 Msa1354340:intron 50.0%
CCGATCCCGATAAGAAAGGA+AGG - tig0014543:100685-100704 None:intergenic 50.0%
AGTCCCGATCCCGATAAGAA+AGG - tig0014543:100689-100708 None:intergenic 50.0%
GGGATCGGGACTAACTAGAA+TGG + tig0014543:100697-100716 Msa1354340:intron 50.0%
CGGGAAATTTAGCAGCGTTG+AGG + tig0014543:100797-100816 Msa1354340:intron 50.0%
TCTAGCCAACCTTCCTGTCA+AGG - tig0014543:100893-100912 None:intergenic 50.0%
!! TCTCACGTACGGTTCTGGAA+CGG + tig0014543:101034-101053 Msa1354340:CDS 50.0%
GAACCGAATGACGACCGTAA+CGG + tig0014543:101066-101085 Msa1354340:CDS 50.0%
CATCCGTTACGGTCGTCATT+CGG - tig0014543:101072-101091 None:intergenic 50.0%
!! ATGACGACCGTAACGGATGT+CGG + tig0014543:101073-101092 Msa1354340:CDS 50.0%
GATTGAGCCGACATCCGTTA+CGG - tig0014543:101083-101102 None:intergenic 50.0%
ACTGTTGAGCCGTATGAGTC+AGG + tig0014543:101987-102006 Msa1354340:intron 50.0%
TTACTCACCTATTCCGACCG+CGG + tig0014543:102042-102061 Msa1354340:CDS 50.0%
GATTGGCAATTCTTCGCGGG+GGG - tig0014543:99557-99576 None:intergenic 55.0%
! GGATTGGCAATTCTTCGCGG+GGG - tig0014543:99558-99577 None:intergenic 55.0%
! AGTGGTTGAAGGCGTAGCAC+TGG - tig0014543:99975-99994 None:intergenic 55.0%
GTGCTACGCCTTCAACCACT+CGG + tig0014543:99975-99994 Msa1354340:intron 55.0%
AGAGATGGCCGAGTGGTTGA+AGG - tig0014543:99986-100005 None:intergenic 55.0%
ATGTAGGAGAGATGGCCGAG+TGG - tig0014543:99993-100012 None:intergenic 55.0%
TGCCCCTCGAGTGAATAGTG+AGG + tig0014543:100021-100040 Msa1354340:intron 55.0%
AGTACCAATAGGCGGCATGG+GGG + tig0014543:100602-100621 Msa1354340:intron 55.0%
!! GGGGAAGAAGCACTACGCTT+AGG + tig0014543:100621-100640 Msa1354340:intron 55.0%
!! CGGATGTCGGCTCAATCTGA+AGG + tig0014543:101086-101105 Msa1354340:CDS 55.0%
TCCCCTAAGGTTGTGAGCAG+CGG + tig0014543:101653-101672 Msa1354340:intron 55.0%
ACCGCTGCTCACAACCTTAG+GGG - tig0014543:101657-101676 None:intergenic 55.0%
CACCGCTGCTCACAACCTTA+GGG - tig0014543:101658-101677 None:intergenic 55.0%
ACACCGCTGCTCACAACCTT+AGG - tig0014543:101659-101678 None:intergenic 55.0%
GGAGAACAGGCCATTCGACA+GGG + tig0014543:102063-102082 Msa1354340:CDS 55.0%
TCTTCCCCCATGCCGCCTAT+TGG - tig0014543:100609-100628 None:intergenic 60.0%
CTGTTCTCCGCGGTCGGAAT+AGG - tig0014543:102052-102071 None:intergenic 60.0%
CTATTCCGACCGCGGAGAAC+AGG + tig0014543:102050-102069 Msa1354340:CDS 60.0%
AATGGCCTGTTCTCCGCGGT+CGG - tig0014543:102058-102077 None:intergenic 60.0%
GTCGAATGGCCTGTTCTCCG+CGG - tig0014543:102062-102081 None:intergenic 60.0%
CGGAGAACAGGCCATTCGAC+AGG + tig0014543:102062-102081 Msa1354340:CDS 60.0%
CGTCGTCTGGGGGCTTTACC+AGG + tig0014543:99127-99146 Msa1354340:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0014543 gene 99091 102134 99091 ID=Msa1354340;Name=Msa1354340
tig0014543 mRNA 99091 102134 99091 ID=Msa1354340-mRNA-1;Parent=Msa1354340;Name=Msa1354340-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|0.33|1|1|3|0|305
tig0014543 exon 99091 99639 99091 ID=Msa1354340-mRNA-1:exon:9089;Parent=Msa1354340-mRNA-1
tig0014543 exon 100934 101176 100934 ID=Msa1354340-mRNA-1:exon:9090;Parent=Msa1354340-mRNA-1
tig0014543 exon 102009 102134 102009 ID=Msa1354340-mRNA-1:exon:9091;Parent=Msa1354340-mRNA-1
tig0014543 CDS 99091 99639 99091 ID=Msa1354340-mRNA-1:cds;Parent=Msa1354340-mRNA-1
tig0014543 CDS 100934 101176 100934 ID=Msa1354340-mRNA-1:cds;Parent=Msa1354340-mRNA-1
tig0014543 CDS 102009 102134 102009 ID=Msa1354340-mRNA-1:cds;Parent=Msa1354340-mRNA-1
Gene Sequence

>Msa1354340

ATGTCACGTTACAGAGGGCCTCGTTTCAAAAAAATACGTCGTCTGGGGGCTTTACCAGGACTAACTAGTAAACGGCCTACAGTTGGAAGCGAACTTAGAAACCAATCGCGCTCGAGTAAAAAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTACAGAACGACAATTGCTTAAATACGTTCGTATCGCTGGAAAAGCGAAAGGTTCAACCGGTCAAGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATACTTTTTCGATTGGGTATGGCTTCGACTATTCCTCAAGCCCGTCAATTAGTTAACCACAGACATGTTTTAGTTAATGGTCGTATAGTAGATATACCAAGTTATCGTTGCAAACCTCAAGATATTATTACAGCGAAGGGTGAACAAAAATCTAGAACTCTGATTCAAAATTCTCTTGAATCAGCCCCCCGCGAAGAATTGCCAATCCATTTGACTCTTGATCCATTCCAATATAAAGGATTAGTCAATCAAATAATAGATAGTAAATGGTCCCGCTACGTTGATAATGAGAATATTGCAATCTTTTTGGATTTGATTCCATGGATGTTTATCATTATACACATAAAGGAGGAGCCGTATGAGATGAAAATCTCACGTACGGTTCTGGAACGGAGATTCTTTGAACCGAATGACGACCGTAACGGATGTCGGCTCAATCTGAAGGAAATTATGCGGAAGCTTTACAGAATTATTATGAGGCTATGCGACTGGAAATTGATCCCTATGATCGAAGAAACTCTCAAGTACGGTTCTAAGGGAAGGAATTTACTCACCTATTCCGACCGCGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAATCTTGGTTTGATCAAGCCGCTGAATATTGA

Protein sequence

>Msa1354340

MSRYRGPRFKKIRRLGALPGLTSKRPTVGSELRNQSRSSKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHVLVNGRIVDIPSYRCKPQDIITAKGEQKSRTLIQNSLESAPREELPIHLTLDPFQYKGLVNQIIDSKWSRYVDNENIAIFLDLIPWMFIIIHIKEEPYEMKISRTVLERRFFEPNDDRNGCRLNLKEIMRKLYRIIMRLCDWKLIPMIEETLKYGSKGRNLLTYSDRGEQAIRQGDSEIAESWFDQAAEY*