Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354950 | YP_009141600.1 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 3.55e-143 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354950 | sp|Q9BBT5|RR4_LOTJA | 95.522 | 201 | 9 | 0 | 1 | 201 | 1 | 201 | 8.95e-140 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354950 | A0A0F6NLD0 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 1.70e-143 | 407 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095150 | Msa1354950 | 0.834749 | 2.503685e-56 | -8.615850e-47 |
| Msa0095170 | Msa1354950 | 0.836000 | 1.209003e-56 | -8.615850e-47 |
| Msa0095190 | Msa1354950 | 0.837993 | 3.743958e-57 | -8.615850e-47 |
| Msa0095210 | Msa1354950 | 0.849223 | 3.711407e-60 | -8.615850e-47 |
| Msa0095280 | Msa1354950 | 0.801235 | 9.906497e-49 | -8.615850e-47 |
| Msa0095290 | Msa1354950 | 0.834367 | 3.123237e-56 | -8.615850e-47 |
| Msa1354320 | Msa1354950 | 0.850657 | 1.473588e-60 | -8.615850e-47 |
| Msa1354330 | Msa1354950 | 0.829194 | 5.900948e-55 | -8.615850e-47 |
| Msa1354340 | Msa1354950 | 0.844703 | 6.413621e-59 | -8.615850e-47 |
| Msa1354350 | Msa1354950 | 0.924535 | 6.186933e-90 | -8.615850e-47 |
| Msa1354380 | Msa1354950 | 0.901657 | 2.147629e-78 | -8.615850e-47 |
| Msa1354390 | Msa1354950 | 0.901173 | 3.500540e-78 | -8.615850e-47 |
| Msa1354860 | Msa1354950 | 0.813750 | 2.185295e-51 | -8.615850e-47 |
| Msa1354880 | Msa1354950 | 0.827091 | 1.894302e-54 | -8.615850e-47 |
| Msa1354900 | Msa1354950 | 0.870523 | 1.368688e-66 | -8.615850e-47 |
| Msa1354910 | Msa1354950 | 0.824508 | 7.773111e-54 | -8.615850e-47 |
| Msa1354920 | Msa1354950 | 0.839489 | 1.537338e-57 | -8.615850e-47 |
| Msa1354930 | Msa1354950 | 0.843188 | 1.633977e-58 | -8.615850e-47 |
| Msa1354950 | Msa1355050 | 0.849638 | 2.843971e-60 | -8.615850e-47 |
| Msa1354950 | Msa1355070 | 0.850173 | 2.014974e-60 | -8.615850e-47 |
| Msa1354950 | Msa1355080 | 0.821849 | 3.244346e-53 | -8.615850e-47 |
| Msa1354950 | Msa1355090 | 0.838621 | 2.579690e-57 | -8.615850e-47 |
| Msa1354950 | Msa1355100 | 0.829838 | 4.113271e-55 | -8.615850e-47 |
| Msa1354950 | Msa1366000 | 0.844532 | 7.132678e-59 | -8.615850e-47 |
| Msa1354950 | Msa1366010 | 0.911575 | 5.206011e-83 | -8.615850e-47 |
| Msa1354950 | Msa1366040 | 0.830345 | 3.095293e-55 | -8.615850e-47 |
| Msa1354950 | Msa1366050 | 0.907191 | 6.615170e-81 | -8.615850e-47 |
| Msa1354950 | Msa1368270 | 0.935889 | 4.157607e-97 | -8.615850e-47 |
| Msa1354950 | Msa1368280 | 0.839557 | 1.475457e-57 | -8.615850e-47 |
| Msa1354950 | Msa1368290 | 0.924875 | 3.919963e-90 | -8.615850e-47 |
| Msa1354950 | Msa1368300 | 0.877719 | 5.013361e-69 | -8.615850e-47 |
| Msa1354950 | Msa1368310 | 0.817473 | 3.237552e-52 | -8.615850e-47 |
| Msa1354950 | Msa1380550 | 0.804272 | 2.338968e-49 | -8.615850e-47 |
| Msa1354950 | Msa1380570 | 0.833814 | 4.296919e-56 | -8.615850e-47 |
| Msa1354950 | Msa1380590 | 0.840606 | 7.857226e-58 | -8.615850e-47 |
| Msa1354950 | Msa1380600 | 0.838952 | 2.118055e-57 | -8.615850e-47 |
| Msa1354950 | Msa1380610 | 0.824028 | 1.007377e-53 | -8.615850e-47 |
| Msa1354950 | Msa1380620 | 0.839440 | 1.582308e-57 | -8.615850e-47 |
| Msa1354950 | Msa1380640 | 0.863244 | 2.858711e-64 | -8.615850e-47 |
| Msa1354950 | Msa1380650 | 0.836058 | 1.169134e-56 | -8.615850e-47 |
| Msa1354950 | Msa1380690 | 0.806392 | 8.410170e-50 | -8.615850e-47 |
| Msa1354950 | Msa1380710 | 0.871254 | 7.861229e-67 | -8.615850e-47 |
| Msa1354950 | Msa1385370 | 0.871187 | 8.269260e-67 | -8.615850e-47 |
| Msa1354950 | Msa1385380 | 0.812198 | 4.782427e-51 | -8.615850e-47 |
| Msa1354950 | Msa1389990 | 0.803497 | 3.388725e-49 | -8.615850e-47 |
| Msa1354950 | Msa1394030 | 0.838413 | 2.917875e-57 | -8.615850e-47 |
| Msa1354950 | Msa1394040 | 0.852795 | 3.652430e-61 | -8.615850e-47 |
| Msa1354950 | Msa1394060 | 0.853362 | 2.512845e-61 | -8.615850e-47 |
| Msa1354950 | Msa1394130 | 0.862721 | 4.147289e-64 | -8.615850e-47 |
| Msa1354950 | Msa1394150 | 0.843350 | 1.479088e-58 | -8.615850e-47 |
| Msa1354950 | Msa1394160 | 0.855873 | 4.709755e-62 | -8.615850e-47 |
| Msa1354950 | Msa1394210 | 0.829137 | 6.089913e-55 | -8.615850e-47 |
| Msa1354950 | Msa1394220 | 0.853434 | 2.395241e-61 | -8.615850e-47 |
| Msa1354950 | Msa1394230 | 0.867170 | 1.666729e-65 | -8.615850e-47 |
| Msa1354950 | Msa1394250 | 0.867418 | 1.389011e-65 | -8.615850e-47 |
| Msa1354950 | Msa1398700 | 0.859255 | 4.693310e-63 | -8.615850e-47 |
| Msa1354950 | Msa1398710 | 0.812558 | 3.991013e-51 | -8.615850e-47 |
| Msa1354950 | Msa1398720 | 0.876001 | 1.974363e-68 | -8.615850e-47 |
| Msa1354950 | Msa1400330 | 0.807987 | 3.863491e-50 | -8.615850e-47 |
| Msa0694810 | Msa1354950 | 0.803290 | 3.741709e-49 | -8.615850e-47 |
| Msa0139800 | Msa1354950 | 0.825227 | 5.259588e-54 | -8.615850e-47 |
| Msa0141090 | Msa1354950 | 0.814645 | 1.386482e-51 | -8.615850e-47 |
| Msa0173880 | Msa1354950 | 0.846862 | 1.663533e-59 | -8.615850e-47 |
| Msa0186750 | Msa1354950 | 0.801799 | 7.592142e-49 | -8.615850e-47 |
| Msa0202640 | Msa1354950 | 0.858857 | 6.174227e-63 | -8.615850e-47 |
| Msa0221840 | Msa1354950 | 0.837920 | 3.909495e-57 | -8.615850e-47 |
| Msa1264300 | Msa1354950 | 0.806273 | 8.911896e-50 | -8.615850e-47 |
| Msa1269400 | Msa1354950 | 0.848360 | 6.439847e-60 | -8.615850e-47 |
| Msa1269410 | Msa1354950 | 0.817331 | 3.484979e-52 | -8.615850e-47 |
| Msa1269420 | Msa1354950 | 0.879100 | 1.641805e-69 | -8.615850e-47 |
| Msa1305090 | Msa1354950 | 0.827345 | 1.646683e-54 | -8.615850e-47 |
| Msa0370210 | Msa1354950 | 0.832220 | 1.070627e-55 | -8.615850e-47 |
| Msa0374840 | Msa1354950 | 0.815552 | 8.719501e-52 | -8.615850e-47 |
| Msa0375100 | Msa1354950 | 0.815913 | 7.245442e-52 | -8.615850e-47 |
| Msa0398630 | Msa1354950 | 0.824545 | 7.616773e-54 | -8.615850e-47 |
| Msa0449920 | Msa1354950 | 0.850342 | 1.806254e-60 | -8.615850e-47 |
| Msa0470850 | Msa1354950 | 0.800205 | 1.607852e-48 | -8.615850e-47 |
| Msa0983680 | Msa1354950 | 0.806459 | 8.142750e-50 | -8.615850e-47 |
| Msa0983700 | Msa1354950 | 0.827401 | 1.596370e-54 | -8.615850e-47 |
| Msa0983720 | Msa1354950 | 0.867402 | 1.405810e-65 | -8.615850e-47 |
| Msa1044520 | Msa1354950 | 0.803217 | 3.873140e-49 | -8.615850e-47 |
| Msa1064410 | Msa1354950 | 0.824554 | 7.578756e-54 | -8.615850e-47 |
| Msa1084630 | Msa1354950 | 0.805830 | 1.104407e-49 | -8.615850e-47 |
| Msa1086050 | Msa1354950 | 0.858002 | 1.110840e-62 | -8.615850e-47 |
| Msa1086070 | Msa1354950 | 0.860966 | 1.428430e-63 | -8.615850e-47 |
| Msa1086080 | Msa1354950 | 0.829538 | 4.868480e-55 | -8.615850e-47 |
| Msa1086090 | Msa1354950 | 0.836886 | 7.192731e-57 | -8.615850e-47 |
| Msa1086100 | Msa1354950 | 0.825327 | 4.980363e-54 | -8.615850e-47 |
| Msa1086140 | Msa1354950 | 0.854343 | 1.310889e-61 | -8.615850e-47 |
| Msa1086150 | Msa1354950 | 0.853326 | 2.573723e-61 | -8.615850e-47 |
| Msa1086180 | Msa1354950 | 0.868390 | 6.767320e-66 | -8.615850e-47 |
| Msa1086190 | Msa1354950 | 0.816237 | 6.132068e-52 | -8.615850e-47 |
| Msa1086200 | Msa1354950 | 0.840482 | 8.466568e-58 | -8.615850e-47 |
| Msa1086210 | Msa1354950 | 0.814394 | 1.575863e-51 | -8.615850e-47 |
| Msa1086220 | Msa1354950 | 0.801252 | 9.828633e-49 | -8.615850e-47 |
| Msa1086260 | Msa1354950 | 0.802391 | 5.737653e-49 | -8.615850e-47 |
| Msa1086270 | Msa1354950 | 0.833479 | 5.210179e-56 | -8.615850e-47 |
| Msa1086280 | Msa1354950 | 0.861291 | 1.137470e-63 | -8.615850e-47 |
| Msa1086300 | Msa1354950 | 0.841974 | 3.430429e-58 | -8.615850e-47 |
| Msa1086360 | Msa1354950 | 0.849625 | 2.866825e-60 | -8.615850e-47 |
| Msa1086380 | Msa1354950 | 0.856062 | 4.145269e-62 | -8.615850e-47 |
| Msa1086430 | Msa1354950 | 0.851732 | 7.324789e-61 | -8.615850e-47 |
| Msa1086450 | Msa1354950 | 0.862526 | 4.762073e-64 | -8.615850e-47 |
| Msa1086470 | Msa1354950 | 0.870015 | 2.007904e-66 | -8.615850e-47 |
| Msa1086550 | Msa1354950 | 0.813570 | 2.394320e-51 | -8.615850e-47 |
| Msa1086600 | Msa1354950 | 0.815242 | 1.022198e-51 | -8.615850e-47 |
| Msa1086660 | Msa1354950 | 0.857950 | 1.150479e-62 | -8.615850e-47 |
| Msa1086860 | Msa1354950 | 0.840316 | 9.355655e-58 | -8.615850e-47 |
| Msa1086880 | Msa1354950 | 0.855563 | 5.800384e-62 | -8.615850e-47 |
| Msa1086890 | Msa1354950 | 0.828757 | 7.527728e-55 | -8.615850e-47 |
| Msa1086900 | Msa1354950 | 0.844309 | 8.188932e-59 | -8.615850e-47 |
| Msa1086910 | Msa1354950 | 0.826109 | 3.247981e-54 | -8.615850e-47 |
| Msa1091700 | Msa1354950 | 0.836333 | 9.950869e-57 | -8.615850e-47 |
| Msa0268170 | Msa1354950 | 0.854739 | 1.007405e-61 | -8.615850e-47 |
| Msa0268190 | Msa1354950 | 0.852492 | 4.454829e-61 | -8.615850e-47 |
| Msa0268300 | Msa1354950 | 0.801253 | 9.823713e-49 | -8.615850e-47 |
| Msa0268350 | Msa1354950 | 0.818540 | 1.858758e-52 | -8.615850e-47 |
| Msa0268370 | Msa1354950 | 0.853926 | 1.730222e-61 | -8.615850e-47 |
| Msa0268390 | Msa1354950 | 0.854840 | 9.411383e-62 | -8.615850e-47 |
| Msa0268400 | Msa1354950 | 0.845605 | 3.659982e-59 | -8.615850e-47 |
| Msa0268410 | Msa1354950 | 0.855256 | 7.128989e-62 | -8.615850e-47 |
| Msa0268430 | Msa1354950 | 0.846050 | 2.769808e-59 | -8.615850e-47 |
| Msa0268530 | Msa1354950 | 0.849694 | 2.743781e-60 | -8.615850e-47 |
| Msa0268550 | Msa1354950 | 0.870746 | 1.156408e-66 | -8.615850e-47 |
| Msa0268560 | Msa1354950 | 0.833206 | 6.093989e-56 | -8.615850e-47 |
| Msa0268570 | Msa1354950 | 0.844743 | 6.256969e-59 | -8.615850e-47 |
| Msa0268580 | Msa1354950 | 0.850287 | 1.872500e-60 | -8.615850e-47 |
| Msa0268630 | Msa1354950 | 0.849749 | 2.648081e-60 | -8.615850e-47 |
| Msa0268640 | Msa1354950 | 0.857444 | 1.625960e-62 | -8.615850e-47 |
| Msa0268660 | Msa1354950 | 0.804400 | 2.199562e-49 | -8.615850e-47 |
| Msa0268720 | Msa1354950 | 0.833114 | 6.422655e-56 | -8.615850e-47 |
| Msa0268740 | Msa1354950 | 0.849126 | 3.948749e-60 | -8.615850e-47 |
| Msa0268750 | Msa1354950 | 0.837738 | 4.354228e-57 | -8.615850e-47 |
| Msa0268760 | Msa1354950 | 0.802248 | 6.140044e-49 | -8.615850e-47 |
| Msa0268830 | Msa1354950 | 0.845484 | 3.947459e-59 | -8.615850e-47 |
| Msa0268840 | Msa1354950 | 0.860413 | 2.102072e-63 | -8.615850e-47 |
| Msa0268860 | Msa1354950 | 0.837405 | 5.300471e-57 | -8.615850e-47 |
| Msa0268920 | Msa1354950 | 0.850535 | 1.594672e-60 | -8.615850e-47 |
| Msa0268940 | Msa1354950 | 0.868305 | 7.207416e-66 | -8.615850e-47 |
| Msa0268950 | Msa1354950 | 0.819605 | 1.064134e-52 | -8.615850e-47 |
| Msa0268960 | Msa1354950 | 0.848334 | 6.549952e-60 | -8.615850e-47 |
| Msa0269040 | Msa1354950 | 0.852444 | 4.598660e-61 | -8.615850e-47 |
| Msa0269050 | Msa1354950 | 0.869801 | 2.357270e-66 | -8.615850e-47 |
| Msa0269070 | Msa1354950 | 0.849812 | 2.542027e-60 | -8.615850e-47 |
| Msa0269090 | Msa1354950 | 0.800957 | 1.129437e-48 | -8.615850e-47 |
| Msa0269130 | Msa1354950 | 0.810579 | 1.074339e-50 | -8.615850e-47 |
| Msa0307490 | Msa1354950 | 0.801432 | 9.029595e-49 | -8.615850e-47 |
| Msa0344180 | Msa1354950 | 0.840565 | 8.056647e-58 | -8.615850e-47 |
| Msa0344190 | Msa1354950 | 0.848655 | 5.336895e-60 | -8.615850e-47 |
| Msa0344210 | Msa1354950 | 0.830292 | 3.188677e-55 | -8.615850e-47 |
| Msa0344280 | Msa1354950 | 0.854855 | 9.319321e-62 | -8.615850e-47 |
| Msa0344300 | Msa1354950 | 0.873908 | 1.020782e-67 | -8.615850e-47 |
| Msa0344310 | Msa1354950 | 0.818421 | 1.977227e-52 | -8.615850e-47 |
| Msa0344330 | Msa1354950 | 0.809543 | 1.796653e-50 | -8.615850e-47 |
| Msa1143120 | Msa1354950 | 0.849176 | 3.825892e-60 | -8.615850e-47 |
| Msa1143130 | Msa1354950 | 0.866434 | 2.860352e-65 | -8.615850e-47 |
| Msa1143160 | Msa1354950 | 0.854109 | 1.532318e-61 | -8.615850e-47 |
| Msa1143170 | Msa1354950 | 0.823372 | 1.435268e-53 | -8.615850e-47 |
| Msa1143180 | Msa1354950 | 0.829567 | 4.787924e-55 | -8.615850e-47 |
| Msa0483990 | Msa1354950 | 0.843606 | 1.263861e-58 | -8.615850e-47 |
| Msa0495270 | Msa1354950 | 0.828335 | 9.518868e-55 | -8.615850e-47 |
| Msa0516340 | Msa1354950 | 0.802913 | 4.475704e-49 | -8.615850e-47 |
| Msa0582510 | Msa1354950 | 0.853445 | 2.378443e-61 | -8.615850e-47 |
| Msa0582520 | Msa1354950 | 0.864883 | 8.823554e-65 | -8.615850e-47 |
| Msa0582540 | Msa1354950 | 0.837108 | 6.315334e-57 | -8.615850e-47 |
| Msa0582610 | Msa1354950 | 0.837680 | 4.505149e-57 | -8.615850e-47 |
| Msa0582630 | Msa1354950 | 0.855239 | 7.208315e-62 | -8.615850e-47 |
| Msa0582640 | Msa1354950 | 0.835410 | 1.705526e-56 | -8.615850e-47 |
| Msa0582650 | Msa1354950 | 0.841348 | 5.018340e-58 | -8.615850e-47 |
| Msa0582660 | Msa1354950 | 0.829865 | 4.052168e-55 | -8.615850e-47 |
| Msa0582690 | Msa1354950 | 0.850712 | 1.422130e-60 | -8.615850e-47 |
| Msa0582700 | Msa1354950 | 0.865526 | 5.541168e-65 | -8.615850e-47 |
| Msa0582720 | Msa1354950 | 0.839152 | 1.880147e-57 | -8.615850e-47 |
| Msa0582730 | Msa1354950 | 0.801354 | 9.366546e-49 | -8.615850e-47 |
| Msa0582750 | Msa1354950 | 0.864906 | 8.679048e-65 | -8.615850e-47 |
| Msa0582760 | Msa1354950 | 0.845969 | 2.914351e-59 | -8.615850e-47 |
| Msa0582770 | Msa1354950 | 0.841014 | 6.143305e-58 | -8.615850e-47 |
| Msa0582780 | Msa1354950 | 0.836990 | 6.768133e-57 | -8.615850e-47 |
| Msa0582810 | Msa1354950 | 0.857498 | 1.566548e-62 | -8.615850e-47 |
| Msa0582820 | Msa1354950 | 0.854532 | 1.156283e-61 | -8.615850e-47 |
| Msa0582840 | Msa1354950 | 0.836149 | 1.108489e-56 | -8.615850e-47 |
| Msa0582890 | Msa1354950 | 0.851726 | 7.357989e-61 | -8.615850e-47 |
| Msa0582910 | Msa1354950 | 0.857649 | 1.413089e-62 | -8.615850e-47 |
| Msa0582920 | Msa1354950 | 0.842192 | 3.003748e-58 | -8.615850e-47 |
| Msa0582930 | Msa1354950 | 0.812517 | 4.075005e-51 | -8.615850e-47 |
| Msa0591380 | Msa1354950 | 0.812590 | 3.927077e-51 | -8.615850e-47 |
| Msa0867640 | Msa1354950 | 0.858347 | 8.767427e-63 | -8.615850e-47 |
| Msa0867650 | Msa1354950 | 0.842046 | 3.283090e-58 | -8.615850e-47 |
| Msa0883880 | Msa1354950 | 0.810718 | 1.002541e-50 | -8.615850e-47 |
| Msa0908650 | Msa1354950 | 0.812117 | 4.981427e-51 | -8.615850e-47 |
| Msa0924830 | Msa1354950 | 0.812372 | 4.382318e-51 | -8.615850e-47 |
| Msa0924850 | Msa1354950 | 0.849402 | 3.308597e-60 | -8.615850e-47 |
| Msa0924870 | Msa1354950 | 0.837532 | 4.917329e-57 | -8.615850e-47 |
| Msa0924880 | Msa1354950 | 0.845066 | 5.119937e-59 | -8.615850e-47 |
| Msa0924990 | Msa1354950 | 0.844946 | 5.515347e-59 | -8.615850e-47 |
| Msa0925040 | Msa1354950 | 0.855146 | 7.669933e-62 | -8.615850e-47 |
| Msa0931070 | Msa1354950 | 0.856088 | 4.074861e-62 | -8.615850e-47 |
| Msa0931080 | Msa1354950 | 0.862695 | 4.223800e-64 | -8.615850e-47 |
| Msa0931100 | Msa1354950 | 0.848512 | 5.847804e-60 | -8.615850e-47 |
| Msa0931110 | Msa1354950 | 0.822887 | 1.862116e-53 | -8.615850e-47 |
| Msa0931130 | Msa1354950 | 0.853476 | 2.330979e-61 | -8.615850e-47 |
| Msa0931140 | Msa1354950 | 0.861009 | 1.386140e-63 | -8.615850e-47 |
| Msa0931160 | Msa1354950 | 0.842035 | 3.306652e-58 | -8.615850e-47 |
| Msa0931190 | Msa1354950 | 0.846771 | 1.761353e-59 | -8.615850e-47 |
| Msa0931210 | Msa1354950 | 0.855906 | 4.606623e-62 | -8.615850e-47 |
| Msa0931220 | Msa1354950 | 0.812050 | 5.153209e-51 | -8.615850e-47 |
| Msa0931230 | Msa1354950 | 0.828097 | 1.086171e-54 | -8.615850e-47 |
| Msa0931240 | Msa1354950 | 0.827048 | 1.939781e-54 | -8.615850e-47 |
| Msa0931260 | Msa1354950 | 0.852208 | 5.369201e-61 | -8.615850e-47 |
| Msa0931270 | Msa1354950 | 0.844345 | 8.007643e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354950 | MtrunA17_Chr7g0229301 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1354950 | MtrunA17_Chr6g0454441 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1354950 | MtrunA17_Chr4g0016451 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1354950 | MtrunA17_Chr6g0466281 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1354950 | MtrunA17_CPg0493311 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1354950 | MtrunA17_Chr7g0229661 | 84.080 | 201 | 13 | 1 | 1 | 201 | 1 | 182 | 1.89e-115 | 327 |
| Msa1354950 | MtrunA17_Chr4g0015291 | 97.436 | 156 | 4 | 0 | 1 | 156 | 1 | 156 | 3.32e-108 | 307 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354950 | ATCG00380.1 | 88.060 | 201 | 24 | 0 | 1 | 201 | 1 | 201 | 2.12e-126 | 355 |
Find 33 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATAATAGATAGTAAA+TGG | 0.189787 | tig0014543:-619162 | Msa1354950:CDS |
| GATTGACTAATCCTTTATAT+TGG | 0.284280 | tig0014543:+619182 | None:intergenic |
| CTTGATCCATTCCAATATAA+AGG | 0.291752 | tig0014543:-619193 | Msa1354950:CDS |
| CTTAAATACGTTCGTATCGC+TGG | 0.342652 | tig0014543:-619493 | Msa1354950:CDS |
| ACAATTACTTGAAATGCGTT+TGG | 0.359489 | tig0014543:-619437 | Msa1354950:CDS |
| TTTGAAAATTAATGAATTGC+TGG | 0.365999 | tig0014543:-619134 | Msa1354950:CDS |
| ATGGATTGGCAATTCTTCGC+GGG | 0.450528 | tig0014543:+619222 | None:intergenic |
| TACCAGGACTAACTAGTAAA+CGG | 0.463029 | tig0014543:-619636 | Msa1354950:CDS |
| TGAGGTTTGCAACGATAACT+TGG | 0.468099 | tig0014543:+619313 | None:intergenic |
| ACTAATCCTTTATATTGGAA+TGG | 0.475526 | tig0014543:+619187 | None:intergenic |
| GTCTGTGGTTAACTAATTGA+CGG | 0.477609 | tig0014543:+619368 | None:intergenic |
| TCAAATAATAGATAGTAAAT+GGG | 0.487910 | tig0014543:-619161 | Msa1354950:CDS |
| ATAATAGATAGTAAATGGGT+TGG | 0.504615 | tig0014543:-619157 | Msa1354950:CDS |
| CTAAGTTCGCTTCCAACTGT+AGG | 0.508663 | tig0014543:+619613 | None:intergenic |
| GGATCAAGAGTCAAATGGAT+TGG | 0.511159 | tig0014543:+619208 | None:intergenic |
| GGAAAAGCGAAAGGTTCAAC+CGG | 0.516182 | tig0014543:-619472 | Msa1354950:CDS |
| TCTGTGGTTAACTAATTGAC+GGG | 0.521261 | tig0014543:+619369 | None:intergenic |
| GGCCGTTTACTAGTTAGTCC+TGG | 0.527000 | tig0014543:+619634 | None:intergenic |
| AATGGATTGGCAATTCTTCG+CGG | 0.545268 | tig0014543:+619221 | None:intergenic |
| TCAAGATATTATTACAGCGA+AGG | 0.559737 | tig0014543:-619293 | Msa1354950:CDS |
| TTCGCTGTAATAATATCTTG+AGG | 0.560954 | tig0014543:+619295 | None:intergenic |
| TAATTGTAGTAAAACTTGAC+CGG | 0.568250 | tig0014543:+619453 | None:intergenic |
| ACTAGTAAACGGCCTACAGT+TGG | 0.568372 | tig0014543:-619625 | Msa1354950:CDS |
| CAAGATATTATTACAGCGAA+GGG | 0.569002 | tig0014543:-619292 | Msa1354950:CDS |
| TTAACTAATTGACGGGCTTG+AGG | 0.581554 | tig0014543:+619376 | None:intergenic |
| GGAATGGATCAAGAGTCAAA+TGG | 0.582974 | tig0014543:+619203 | None:intergenic |
| GATTGGCAATTCTTCGCGGG+GGG | 0.584547 | tig0014543:+619225 | None:intergenic |
| TGGATTGGCAATTCTTCGCG+GGG | 0.610754 | tig0014543:+619223 | None:intergenic |
| TGTTTATGTCACGTTACAGA+GGG | 0.632465 | tig0014543:-619693 | None:intergenic |
| GTGTTTATGTCACGTTACAG+AGG | 0.633128 | tig0014543:-619694 | None:intergenic |
| CGTATCGCTGGAAAAGCGAA+AGG | 0.633501 | tig0014543:-619481 | Msa1354950:CDS |
| CATTAACTAAAACATGTCTG+TGG | 0.663264 | tig0014543:+619353 | None:intergenic |
| GGATTGGCAATTCTTCGCGG+GGG | 0.681198 | tig0014543:+619224 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAATAATAGATAGTAAA+TGG | - | tig0014543:619631-619650 | Msa1354950:CDS | 15.0% |
| !! | TCAAATAATAGATAGTAAAT+GGG | - | tig0014543:619632-619651 | Msa1354950:CDS | 15.0% |
| !! | TTTGAAAATTAATGAATTGC+TGG | - | tig0014543:619659-619678 | Msa1354950:CDS | 20.0% |
| !! | CAAAAATTGCGTTTTCATTA+TGG | - | tig0014543:619258-619277 | Msa1354950:CDS | 25.0% |
| ! | TAATTGTAGTAAAACTTGAC+CGG | + | tig0014543:619343-619362 | None:intergenic | 25.0% |
| !!! | GATAACATACTTTTTCGATT+GGG | - | tig0014543:619378-619397 | Msa1354950:CDS | 25.0% |
| ! | ACTAATCCTTTATATTGGAA+TGG | + | tig0014543:619609-619628 | None:intergenic | 25.0% |
| ! | GATTGACTAATCCTTTATAT+TGG | + | tig0014543:619614-619633 | None:intergenic | 25.0% |
| ! | ATAATAGATAGTAAATGGGT+TGG | - | tig0014543:619636-619655 | Msa1354950:CDS | 25.0% |
| TTTCAAAAAAATACGTCGTC+TGG | - | tig0014543:619128-619147 | Msa1354950:CDS | 30.0% | |
| TTCAAAAAAATACGTCGTCT+GGG | - | tig0014543:619129-619148 | Msa1354950:CDS | 30.0% | |
| ACAATTACTTGAAATGCGTT+TGG | - | tig0014543:619356-619375 | Msa1354950:CDS | 30.0% | |
| !!! | GGATAACATACTTTTTCGAT+TGG | - | tig0014543:619377-619396 | Msa1354950:CDS | 30.0% |
| CATTAACTAAAACATGTCTG+TGG | + | tig0014543:619443-619462 | None:intergenic | 30.0% | |
| !!! | CACAGACATGTTTTAGTTAA+TGG | - | tig0014543:619441-619460 | Msa1354950:CDS | 30.0% |
| TTCGCTGTAATAATATCTTG+AGG | + | tig0014543:619501-619520 | None:intergenic | 30.0% | |
| TCAAGATATTATTACAGCGA+AGG | - | tig0014543:619500-619519 | Msa1354950:CDS | 30.0% | |
| CAAGATATTATTACAGCGAA+GGG | - | tig0014543:619501-619520 | Msa1354950:CDS | 30.0% | |
| CTTGATCCATTCCAATATAA+AGG | - | tig0014543:619600-619619 | Msa1354950:CDS | 30.0% | |
| !!! | CGACGTATTTTTTTGAAACG+AGG | + | tig0014543:619126-619145 | None:intergenic | 35.0% |
| TCAAAAAAATACGTCGTCTG+GGG | - | tig0014543:619130-619149 | Msa1354950:CDS | 35.0% | |
| TACCAGGACTAACTAGTAAA+CGG | - | tig0014543:619157-619176 | Msa1354950:CDS | 35.0% | |
| !!! | CATACTTTTTCGATTGGGTA+TGG | - | tig0014543:619383-619402 | Msa1354950:CDS | 35.0% |
| TCTGTGGTTAACTAATTGAC+GGG | + | tig0014543:619427-619446 | None:intergenic | 35.0% | |
| GTCTGTGGTTAACTAATTGA+CGG | + | tig0014543:619428-619447 | None:intergenic | 35.0% | |
| CAAAAAAATACGTCGTCTGG+GGG | - | tig0014543:619131-619150 | Msa1354950:CDS | 40.0% | |
| !!! | ATTTTTTACTCGAGCGCGAT+TGG | + | tig0014543:619209-619228 | None:intergenic | 40.0% |
| CTTAAATACGTTCGTATCGC+TGG | - | tig0014543:619300-619319 | Msa1354950:CDS | 40.0% | |
| !! | TTAACTAATTGACGGGCTTG+AGG | + | tig0014543:619420-619439 | None:intergenic | 40.0% |
| TGAGGTTTGCAACGATAACT+TGG | + | tig0014543:619483-619502 | None:intergenic | 40.0% | |
| !! | AATGGATTGGCAATTCTTCG+CGG | + | tig0014543:619575-619594 | None:intergenic | 40.0% |
| GGATCAAGAGTCAAATGGAT+TGG | + | tig0014543:619588-619607 | None:intergenic | 40.0% | |
| GGAATGGATCAAGAGTCAAA+TGG | + | tig0014543:619593-619612 | None:intergenic | 40.0% | |
| ACTAGTAAACGGCCTACAGT+TGG | - | tig0014543:619168-619187 | Msa1354950:CDS | 45.0% | |
| CTAAGTTCGCTTCCAACTGT+AGG | + | tig0014543:619183-619202 | None:intergenic | 45.0% | |
| GGAAAAGCGAAAGGTTCAAC+CGG | - | tig0014543:619321-619340 | Msa1354950:CDS | 45.0% | |
| !! | ATGGATTGGCAATTCTTCGC+GGG | + | tig0014543:619574-619593 | None:intergenic | 45.0% |
| GGCCGTTTACTAGTTAGTCC+TGG | + | tig0014543:619162-619181 | None:intergenic | 50.0% | |
| CGTATCGCTGGAAAAGCGAA+AGG | - | tig0014543:619312-619331 | Msa1354950:CDS | 50.0% | |
| !! | TGGATTGGCAATTCTTCGCG+GGG | + | tig0014543:619573-619592 | None:intergenic | 50.0% |
| GATTGGCAATTCTTCGCGGG+GGG | + | tig0014543:619571-619590 | None:intergenic | 55.0% | |
| ! | GGATTGGCAATTCTTCGCGG+GGG | + | tig0014543:619572-619591 | None:intergenic | 55.0% |
| CGTCGTCTGGGGGCTTTACC+AGG | - | tig0014543:619141-619160 | Msa1354950:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0014543 | gene | 619105 | 619710 | 619105 | ID=Msa1354950;Name=Msa1354950 |
| tig0014543 | mRNA | 619105 | 619710 | 619105 | ID=Msa1354950-mRNA-1;Parent=Msa1354950;Name=Msa1354950-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|201 |
| tig0014543 | exon | 619105 | 619710 | 619105 | ID=Msa1354950-mRNA-1:exon:9276;Parent=Msa1354950-mRNA-1 |
| tig0014543 | CDS | 619105 | 619710 | 619105 | ID=Msa1354950-mRNA-1:cds;Parent=Msa1354950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
