Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366010 | YP_009141600.1 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 3.55e-143 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366010 | sp|Q9BBT5|RR4_LOTJA | 95.522 | 201 | 9 | 0 | 1 | 201 | 1 | 201 | 8.95e-140 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366010 | A0A0F6NLD0 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 1.70e-143 | 407 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030710 | Msa1366010 | 0.800911 | 1.153989e-48 | -8.615850e-47 |
| Msa0095150 | Msa1366010 | 0.822896 | 1.853100e-53 | -8.615850e-47 |
| Msa0095170 | Msa1366010 | 0.836551 | 8.757737e-57 | -8.615850e-47 |
| Msa0095190 | Msa1366010 | 0.831710 | 1.430725e-55 | -8.615850e-47 |
| Msa0095210 | Msa1366010 | 0.832260 | 1.046136e-55 | -8.615850e-47 |
| Msa0095290 | Msa1366010 | 0.828509 | 8.639954e-55 | -8.615850e-47 |
| Msa1354320 | Msa1366010 | 0.842627 | 2.304427e-58 | -8.615850e-47 |
| Msa1354330 | Msa1366010 | 0.850936 | 1.230158e-60 | -8.615850e-47 |
| Msa1354340 | Msa1366010 | 0.825755 | 3.942106e-54 | -8.615850e-47 |
| Msa1354350 | Msa1366010 | 0.904894 | 7.610963e-80 | -8.615850e-47 |
| Msa1354380 | Msa1366010 | 0.883937 | 2.939461e-71 | -8.615850e-47 |
| Msa1354390 | Msa1366010 | 0.883877 | 3.092175e-71 | -8.615850e-47 |
| Msa1354880 | Msa1366010 | 0.819431 | 1.165908e-52 | -8.615850e-47 |
| Msa1354900 | Msa1366010 | 0.848849 | 4.713958e-60 | -8.615850e-47 |
| Msa1354910 | Msa1366010 | 0.824106 | 9.661093e-54 | -8.615850e-47 |
| Msa1354920 | Msa1366010 | 0.817220 | 3.692244e-52 | -8.615850e-47 |
| Msa1354930 | Msa1366010 | 0.839577 | 1.458479e-57 | -8.615850e-47 |
| Msa1354950 | Msa1366010 | 0.911575 | 5.206011e-83 | -8.615850e-47 |
| Msa1355050 | Msa1366010 | 0.838738 | 2.406106e-57 | -8.615850e-47 |
| Msa1355070 | Msa1366010 | 0.838862 | 2.235318e-57 | -8.615850e-47 |
| Msa1355080 | Msa1366010 | 0.832724 | 8.028333e-56 | -8.615850e-47 |
| Msa1355090 | Msa1366010 | 0.819629 | 1.050613e-52 | -8.615850e-47 |
| Msa1355100 | Msa1366010 | 0.837159 | 6.125293e-57 | -8.615850e-47 |
| Msa1366000 | Msa1366010 | 0.843188 | 1.634049e-58 | -8.615850e-47 |
| Msa1366010 | Msa1366040 | 0.827522 | 1.493550e-54 | -8.615850e-47 |
| Msa1366010 | Msa1366050 | 0.924690 | 5.024798e-90 | -8.615850e-47 |
| Msa1366010 | Msa1368270 | 0.893987 | 3.764162e-75 | -8.615850e-47 |
| Msa1366010 | Msa1368280 | 0.833265 | 5.890501e-56 | -8.615850e-47 |
| Msa1366010 | Msa1368290 | 0.897196 | 1.776679e-76 | -8.615850e-47 |
| Msa1366010 | Msa1368300 | 0.866456 | 2.813069e-65 | -8.615850e-47 |
| Msa1366010 | Msa1380570 | 0.827894 | 1.215819e-54 | -8.615850e-47 |
| Msa1366010 | Msa1380590 | 0.843052 | 1.775614e-58 | -8.615850e-47 |
| Msa1366010 | Msa1380600 | 0.845277 | 4.490355e-59 | -8.615850e-47 |
| Msa1366010 | Msa1380610 | 0.826296 | 2.933066e-54 | -8.615850e-47 |
| Msa1366010 | Msa1380620 | 0.835434 | 1.681732e-56 | -8.615850e-47 |
| Msa1366010 | Msa1380640 | 0.890140 | 1.289752e-73 | -8.615850e-47 |
| Msa1366010 | Msa1380650 | 0.836204 | 1.073179e-56 | -8.615850e-47 |
| Msa1366010 | Msa1380710 | 0.867994 | 9.077407e-66 | -8.615850e-47 |
| Msa1366010 | Msa1385370 | 0.864178 | 1.466159e-64 | -8.615850e-47 |
| Msa1366010 | Msa1385380 | 0.821471 | 3.966953e-53 | -8.615850e-47 |
| Msa1366010 | Msa1394030 | 0.811930 | 5.473090e-51 | -8.615850e-47 |
| Msa1366010 | Msa1394040 | 0.835263 | 1.858334e-56 | -8.615850e-47 |
| Msa1366010 | Msa1394060 | 0.838728 | 2.420500e-57 | -8.615850e-47 |
| Msa1366010 | Msa1394130 | 0.863440 | 2.486114e-64 | -8.615850e-47 |
| Msa1366010 | Msa1394150 | 0.839635 | 1.408625e-57 | -8.615850e-47 |
| Msa1366010 | Msa1394160 | 0.836729 | 7.888383e-57 | -8.615850e-47 |
| Msa1366010 | Msa1394210 | 0.825234 | 5.237745e-54 | -8.615850e-47 |
| Msa1366010 | Msa1394220 | 0.844801 | 6.034981e-59 | -8.615850e-47 |
| Msa1366010 | Msa1394230 | 0.839390 | 1.630200e-57 | -8.615850e-47 |
| Msa1366010 | Msa1394250 | 0.844293 | 8.270837e-59 | -8.615850e-47 |
| Msa1366010 | Msa1398700 | 0.831818 | 1.345157e-55 | -8.615850e-47 |
| Msa1366010 | Msa1398720 | 0.880161 | 6.890856e-70 | -8.615850e-47 |
| Msa0704750 | Msa1366010 | 0.802360 | 5.820316e-49 | -8.615850e-47 |
| Msa0139800 | Msa1366010 | 0.810538 | 1.096763e-50 | -8.615850e-47 |
| Msa0141090 | Msa1366010 | 0.803956 | 2.721761e-49 | -8.615850e-47 |
| Msa0147070 | Msa1366010 | 0.800129 | 1.665564e-48 | -8.615850e-47 |
| Msa0173880 | Msa1366010 | 0.837668 | 4.537330e-57 | -8.615850e-47 |
| Msa0186750 | Msa1366010 | 0.805822 | 1.108906e-49 | -8.615850e-47 |
| Msa0202640 | Msa1366010 | 0.830014 | 3.728102e-55 | -8.615850e-47 |
| Msa0221840 | Msa1366010 | 0.829602 | 4.697403e-55 | -8.615850e-47 |
| Msa1269400 | Msa1366010 | 0.870903 | 1.026596e-66 | -8.615850e-47 |
| Msa1269410 | Msa1366010 | 0.801037 | 1.087539e-48 | -8.615850e-47 |
| Msa1269420 | Msa1366010 | 0.879572 | 1.117086e-69 | -8.615850e-47 |
| Msa1305090 | Msa1366010 | 0.831134 | 1.982712e-55 | -8.615850e-47 |
| Msa1317340 | Msa1366010 | 0.800477 | 1.414972e-48 | -8.615850e-47 |
| Msa0370210 | Msa1366010 | 0.839999 | 1.132333e-57 | -8.615850e-47 |
| Msa0374840 | Msa1366010 | 0.802930 | 4.441545e-49 | -8.615850e-47 |
| Msa0375100 | Msa1366010 | 0.805572 | 1.251484e-49 | -8.615850e-47 |
| Msa0398630 | Msa1366010 | 0.815529 | 8.821363e-52 | -8.615850e-47 |
| Msa0449920 | Msa1366010 | 0.844956 | 5.480975e-59 | -8.615850e-47 |
| Msa0983700 | Msa1366010 | 0.839461 | 1.563092e-57 | -8.615850e-47 |
| Msa0983720 | Msa1366010 | 0.838891 | 2.196957e-57 | -8.615850e-47 |
| Msa1064410 | Msa1366010 | 0.817229 | 3.675321e-52 | -8.615850e-47 |
| Msa1086050 | Msa1366010 | 0.850179 | 2.007356e-60 | -8.615850e-47 |
| Msa1086070 | Msa1366010 | 0.840432 | 8.725765e-58 | -8.615850e-47 |
| Msa1086080 | Msa1366010 | 0.836094 | 1.144454e-56 | -8.615850e-47 |
| Msa1086090 | Msa1366010 | 0.816999 | 4.139151e-52 | -8.615850e-47 |
| Msa1086100 | Msa1366010 | 0.831543 | 1.572472e-55 | -8.615850e-47 |
| Msa1086140 | Msa1366010 | 0.858187 | 9.782728e-63 | -8.615850e-47 |
| Msa1086150 | Msa1366010 | 0.837899 | 3.957498e-57 | -8.615850e-47 |
| Msa1086180 | Msa1366010 | 0.845960 | 2.930309e-59 | -8.615850e-47 |
| Msa1086190 | Msa1366010 | 0.821211 | 4.554028e-53 | -8.615850e-47 |
| Msa1086200 | Msa1366010 | 0.816698 | 4.835232e-52 | -8.615850e-47 |
| Msa1086210 | Msa1366010 | 0.814375 | 1.590756e-51 | -8.615850e-47 |
| Msa1086250 | Msa1366010 | 0.809316 | 2.009499e-50 | -8.615850e-47 |
| Msa1086260 | Msa1366010 | 0.811100 | 8.286865e-51 | -8.615850e-47 |
| Msa1086270 | Msa1366010 | 0.843265 | 1.558205e-58 | -8.615850e-47 |
| Msa1086280 | Msa1366010 | 0.846882 | 1.642478e-59 | -8.615850e-47 |
| Msa1086300 | Msa1366010 | 0.841271 | 5.257219e-58 | -8.615850e-47 |
| Msa1086360 | Msa1366010 | 0.837899 | 3.958008e-57 | -8.615850e-47 |
| Msa1086380 | Msa1366010 | 0.839473 | 1.551570e-57 | -8.615850e-47 |
| Msa1086430 | Msa1366010 | 0.833168 | 6.226308e-56 | -8.615850e-47 |
| Msa1086450 | Msa1366010 | 0.842794 | 2.080622e-58 | -8.615850e-47 |
| Msa1086470 | Msa1366010 | 0.849290 | 3.556273e-60 | -8.615850e-47 |
| Msa1086660 | Msa1366010 | 0.847294 | 1.266321e-59 | -8.615850e-47 |
| Msa1086860 | Msa1366010 | 0.837802 | 4.193027e-57 | -8.615850e-47 |
| Msa1086880 | Msa1366010 | 0.841692 | 4.071874e-58 | -8.615850e-47 |
| Msa1086890 | Msa1366010 | 0.835826 | 1.338599e-56 | -8.615850e-47 |
| Msa1086900 | Msa1366010 | 0.822267 | 2.596253e-53 | -8.615850e-47 |
| Msa1086910 | Msa1366010 | 0.825293 | 5.072998e-54 | -8.615850e-47 |
| Msa1091700 | Msa1366010 | 0.825380 | 4.839090e-54 | -8.615850e-47 |
| Msa0268170 | Msa1366010 | 0.840685 | 7.491249e-58 | -8.615850e-47 |
| Msa0268190 | Msa1366010 | 0.844803 | 6.028563e-59 | -8.615850e-47 |
| Msa0268350 | Msa1366010 | 0.800437 | 1.441860e-48 | -8.615850e-47 |
| Msa0268370 | Msa1366010 | 0.849516 | 3.076566e-60 | -8.615850e-47 |
| Msa0268390 | Msa1366010 | 0.843213 | 1.608960e-58 | -8.615850e-47 |
| Msa0268400 | Msa1366010 | 0.843225 | 1.596963e-58 | -8.615850e-47 |
| Msa0268410 | Msa1366010 | 0.841910 | 3.567093e-58 | -8.615850e-47 |
| Msa0268430 | Msa1366010 | 0.836622 | 8.398525e-57 | -8.615850e-47 |
| Msa0268530 | Msa1366010 | 0.835324 | 1.792746e-56 | -8.615850e-47 |
| Msa0268550 | Msa1366010 | 0.858622 | 7.262218e-63 | -8.615850e-47 |
| Msa0268560 | Msa1366010 | 0.844771 | 6.149065e-59 | -8.615850e-47 |
| Msa0268570 | Msa1366010 | 0.819773 | 9.739575e-53 | -8.615850e-47 |
| Msa0268580 | Msa1366010 | 0.845068 | 5.113308e-59 | -8.615850e-47 |
| Msa0268630 | Msa1366010 | 0.851965 | 6.292485e-61 | -8.615850e-47 |
| Msa0268640 | Msa1366010 | 0.831879 | 1.299257e-55 | -8.615850e-47 |
| Msa0268720 | Msa1366010 | 0.849414 | 3.284065e-60 | -8.615850e-47 |
| Msa0268740 | Msa1366010 | 0.847376 | 1.202487e-59 | -8.615850e-47 |
| Msa0268750 | Msa1366010 | 0.825016 | 5.899620e-54 | -8.615850e-47 |
| Msa0268760 | Msa1366010 | 0.808047 | 3.752719e-50 | -8.615850e-47 |
| Msa0268830 | Msa1366010 | 0.841784 | 3.851260e-58 | -8.615850e-47 |
| Msa0268840 | Msa1366010 | 0.841555 | 4.426993e-58 | -8.615850e-47 |
| Msa0268860 | Msa1366010 | 0.839208 | 1.817888e-57 | -8.615850e-47 |
| Msa0268920 | Msa1366010 | 0.843816 | 1.110175e-58 | -8.615850e-47 |
| Msa0268940 | Msa1366010 | 0.856013 | 4.286043e-62 | -8.615850e-47 |
| Msa0268950 | Msa1366010 | 0.833914 | 4.056650e-56 | -8.615850e-47 |
| Msa0268960 | Msa1366010 | 0.824893 | 6.304576e-54 | -8.615850e-47 |
| Msa0269040 | Msa1366010 | 0.842298 | 2.815629e-58 | -8.615850e-47 |
| Msa0269050 | Msa1366010 | 0.851313 | 9.626499e-61 | -8.615850e-47 |
| Msa0269070 | Msa1366010 | 0.838107 | 3.499796e-57 | -8.615850e-47 |
| Msa0307490 | Msa1366010 | 0.805864 | 1.086249e-49 | -8.615850e-47 |
| Msa0344180 | Msa1366010 | 0.829021 | 6.498635e-55 | -8.615850e-47 |
| Msa0344190 | Msa1366010 | 0.852510 | 4.402991e-61 | -8.615850e-47 |
| Msa0344210 | Msa1366010 | 0.813346 | 2.681082e-51 | -8.615850e-47 |
| Msa0344280 | Msa1366010 | 0.870717 | 1.181464e-66 | -8.615850e-47 |
| Msa0344300 | Msa1366010 | 0.852393 | 4.755521e-61 | -8.615850e-47 |
| Msa0344310 | Msa1366010 | 0.829394 | 5.276643e-55 | -8.615850e-47 |
| Msa0344330 | Msa1366010 | 0.814924 | 1.202365e-51 | -8.615850e-47 |
| Msa1143120 | Msa1366010 | 0.847496 | 1.114954e-59 | -8.615850e-47 |
| Msa1143130 | Msa1366010 | 0.846454 | 2.149954e-59 | -8.615850e-47 |
| Msa1143160 | Msa1366010 | 0.843315 | 1.511440e-58 | -8.615850e-47 |
| Msa1143170 | Msa1366010 | 0.814982 | 1.167157e-51 | -8.615850e-47 |
| Msa1143180 | Msa1366010 | 0.814040 | 1.885958e-51 | -8.615850e-47 |
| Msa0483990 | Msa1366010 | 0.852856 | 3.508010e-61 | -8.615850e-47 |
| Msa0495270 | Msa1366010 | 0.826739 | 2.299787e-54 | -8.615850e-47 |
| Msa0516340 | Msa1366010 | 0.806347 | 8.597375e-50 | -8.615850e-47 |
| Msa0577140 | Msa1366010 | 0.802917 | 4.468532e-49 | -8.615850e-47 |
| Msa0582510 | Msa1366010 | 0.848121 | 7.498850e-60 | -8.615850e-47 |
| Msa0582520 | Msa1366010 | 0.860553 | 1.906220e-63 | -8.615850e-47 |
| Msa0582540 | Msa1366010 | 0.834511 | 2.873209e-56 | -8.615850e-47 |
| Msa0582610 | Msa1366010 | 0.825374 | 4.855061e-54 | -8.615850e-47 |
| Msa0582630 | Msa1366010 | 0.835264 | 1.856959e-56 | -8.615850e-47 |
| Msa0582640 | Msa1366010 | 0.838256 | 3.204222e-57 | -8.615850e-47 |
| Msa0582650 | Msa1366010 | 0.817892 | 2.605510e-52 | -8.615850e-47 |
| Msa0582660 | Msa1366010 | 0.823955 | 1.048395e-53 | -8.615850e-47 |
| Msa0582690 | Msa1366010 | 0.850786 | 1.355585e-60 | -8.615850e-47 |
| Msa0582700 | Msa1366010 | 0.865014 | 8.024602e-65 | -8.615850e-47 |
| Msa0582720 | Msa1366010 | 0.840211 | 9.966749e-58 | -8.615850e-47 |
| Msa0582730 | Msa1366010 | 0.821282 | 4.386200e-53 | -8.615850e-47 |
| Msa0582750 | Msa1366010 | 0.843882 | 1.065704e-58 | -8.615850e-47 |
| Msa0582760 | Msa1366010 | 0.842984 | 1.852105e-58 | -8.615850e-47 |
| Msa0582770 | Msa1366010 | 0.824527 | 7.693333e-54 | -8.615850e-47 |
| Msa0582780 | Msa1366010 | 0.827866 | 1.234423e-54 | -8.615850e-47 |
| Msa0582810 | Msa1366010 | 0.847655 | 1.007937e-59 | -8.615850e-47 |
| Msa0582820 | Msa1366010 | 0.847897 | 8.643781e-60 | -8.615850e-47 |
| Msa0582840 | Msa1366010 | 0.825150 | 5.482238e-54 | -8.615850e-47 |
| Msa0582890 | Msa1366010 | 0.835551 | 1.571126e-56 | -8.615850e-47 |
| Msa0582910 | Msa1366010 | 0.858432 | 8.272935e-63 | -8.615850e-47 |
| Msa0582920 | Msa1366010 | 0.817704 | 2.872590e-52 | -8.615850e-47 |
| Msa0582930 | Msa1366010 | 0.814180 | 1.756701e-51 | -8.615850e-47 |
| Msa0591370 | Msa1366010 | 0.807314 | 5.370251e-50 | -8.615850e-47 |
| Msa0591380 | Msa1366010 | 0.818585 | 1.815128e-52 | -8.615850e-47 |
| Msa0867640 | Msa1366010 | 0.864682 | 1.020041e-64 | -8.615850e-47 |
| Msa0867650 | Msa1366010 | 0.833083 | 6.538489e-56 | -8.615850e-47 |
| Msa0883880 | Msa1366010 | 0.815789 | 7.723587e-52 | -8.615850e-47 |
| Msa0924850 | Msa1366010 | 0.837910 | 3.932510e-57 | -8.615850e-47 |
| Msa0924870 | Msa1366010 | 0.842557 | 2.404583e-58 | -8.615850e-47 |
| Msa0924880 | Msa1366010 | 0.828911 | 6.907587e-55 | -8.615850e-47 |
| Msa0924990 | Msa1366010 | 0.846267 | 2.417383e-59 | -8.615850e-47 |
| Msa0925040 | Msa1366010 | 0.849709 | 2.716300e-60 | -8.615850e-47 |
| Msa0931070 | Msa1366010 | 0.849390 | 3.333671e-60 | -8.615850e-47 |
| Msa0931080 | Msa1366010 | 0.860752 | 1.659366e-63 | -8.615850e-47 |
| Msa0931100 | Msa1366010 | 0.854313 | 1.337664e-61 | -8.615850e-47 |
| Msa0931110 | Msa1366010 | 0.813426 | 2.574969e-51 | -8.615850e-47 |
| Msa0931130 | Msa1366010 | 0.859065 | 5.352746e-63 | -8.615850e-47 |
| Msa0931140 | Msa1366010 | 0.853895 | 1.765423e-61 | -8.615850e-47 |
| Msa0931160 | Msa1366010 | 0.839112 | 1.924826e-57 | -8.615850e-47 |
| Msa0931190 | Msa1366010 | 0.840788 | 7.040911e-58 | -8.615850e-47 |
| Msa0931210 | Msa1366010 | 0.849395 | 3.324010e-60 | -8.615850e-47 |
| Msa0931220 | Msa1366010 | 0.814936 | 1.194870e-51 | -8.615850e-47 |
| Msa0931230 | Msa1366010 | 0.820161 | 7.940937e-53 | -8.615850e-47 |
| Msa0931240 | Msa1366010 | 0.840259 | 9.682291e-58 | -8.615850e-47 |
| Msa0931260 | Msa1366010 | 0.851410 | 9.038907e-61 | -8.615850e-47 |
| Msa0931270 | Msa1366010 | 0.846018 | 2.827060e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366010 | MtrunA17_Chr7g0229301 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1366010 | MtrunA17_Chr6g0454441 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1366010 | MtrunA17_Chr4g0016451 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1366010 | MtrunA17_Chr6g0466281 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1366010 | MtrunA17_CPg0493311 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1366010 | MtrunA17_Chr7g0229661 | 84.080 | 201 | 13 | 1 | 1 | 201 | 1 | 182 | 1.89e-115 | 327 |
| Msa1366010 | MtrunA17_Chr4g0015291 | 97.436 | 156 | 4 | 0 | 1 | 156 | 1 | 156 | 3.32e-108 | 307 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366010 | ATCG00380.1 | 88.060 | 201 | 24 | 0 | 1 | 201 | 1 | 201 | 2.12e-126 | 355 |
Find 33 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATAATAGATAGTAAA+TGG | 0.189787 | tig0018442:-110233 | Msa1366010:CDS |
| GATTGACTAATCCTTTATAT+TGG | 0.284280 | tig0018442:+110253 | None:intergenic |
| CTTGATCCATTCCAATATAA+AGG | 0.291752 | tig0018442:-110264 | Msa1366010:CDS |
| CTTAAATACGTTCGTATCGC+TGG | 0.342652 | tig0018442:-110564 | Msa1366010:CDS |
| ACAATTACTTGAAATGCGTT+TGG | 0.359489 | tig0018442:-110508 | Msa1366010:CDS |
| TTTGAAAATTAATGAATTGC+TGG | 0.365999 | tig0018442:-110205 | Msa1366010:CDS |
| ATGGATTGGCAATTCTTCGC+GGG | 0.450528 | tig0018442:+110293 | None:intergenic |
| TACCAGGACTAACTAGTAAA+CGG | 0.463029 | tig0018442:-110707 | Msa1366010:CDS |
| TGAGGTTTGCAACGATAACT+TGG | 0.468099 | tig0018442:+110384 | None:intergenic |
| ACTAATCCTTTATATTGGAA+TGG | 0.475526 | tig0018442:+110258 | None:intergenic |
| GTCTGTGGTTAACTAATTGA+CGG | 0.477609 | tig0018442:+110439 | None:intergenic |
| TCAAATAATAGATAGTAAAT+GGG | 0.487910 | tig0018442:-110232 | Msa1366010:CDS |
| ATAATAGATAGTAAATGGGT+TGG | 0.504615 | tig0018442:-110228 | Msa1366010:CDS |
| CTAAGTTCGCTTCCAACTGT+AGG | 0.508663 | tig0018442:+110684 | None:intergenic |
| GGATCAAGAGTCAAATGGAT+TGG | 0.511159 | tig0018442:+110279 | None:intergenic |
| GGAAAAGCGAAAGGTTCAAC+CGG | 0.516182 | tig0018442:-110543 | Msa1366010:CDS |
| TCTGTGGTTAACTAATTGAC+GGG | 0.521261 | tig0018442:+110440 | None:intergenic |
| GGCCGTTTACTAGTTAGTCC+TGG | 0.527000 | tig0018442:+110705 | None:intergenic |
| AATGGATTGGCAATTCTTCG+CGG | 0.545268 | tig0018442:+110292 | None:intergenic |
| TCAAGATATTATTACAGCGA+AGG | 0.559737 | tig0018442:-110364 | Msa1366010:CDS |
| TTCGCTGTAATAATATCTTG+AGG | 0.560954 | tig0018442:+110366 | None:intergenic |
| TAATTGTAGTAAAACTTGAC+CGG | 0.568250 | tig0018442:+110524 | None:intergenic |
| ACTAGTAAACGGCCTACAGT+TGG | 0.568372 | tig0018442:-110696 | Msa1366010:CDS |
| CAAGATATTATTACAGCGAA+GGG | 0.569002 | tig0018442:-110363 | Msa1366010:CDS |
| TTAACTAATTGACGGGCTTG+AGG | 0.581554 | tig0018442:+110447 | None:intergenic |
| GGAATGGATCAAGAGTCAAA+TGG | 0.582974 | tig0018442:+110274 | None:intergenic |
| GATTGGCAATTCTTCGCGGG+GGG | 0.584547 | tig0018442:+110296 | None:intergenic |
| TGGATTGGCAATTCTTCGCG+GGG | 0.610754 | tig0018442:+110294 | None:intergenic |
| TGTTTATGTCACGTTACAGA+GGG | 0.632465 | tig0018442:-110764 | None:intergenic |
| GTGTTTATGTCACGTTACAG+AGG | 0.633128 | tig0018442:-110765 | None:intergenic |
| CGTATCGCTGGAAAAGCGAA+AGG | 0.633501 | tig0018442:-110552 | Msa1366010:CDS |
| CATTAACTAAAACATGTCTG+TGG | 0.663264 | tig0018442:+110424 | None:intergenic |
| GGATTGGCAATTCTTCGCGG+GGG | 0.681198 | tig0018442:+110295 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAATAATAGATAGTAAA+TGG | - | tig0018442:110702-110721 | Msa1366010:CDS | 15.0% |
| !! | TCAAATAATAGATAGTAAAT+GGG | - | tig0018442:110703-110722 | Msa1366010:CDS | 15.0% |
| !! | TTTGAAAATTAATGAATTGC+TGG | - | tig0018442:110730-110749 | Msa1366010:CDS | 20.0% |
| !! | CAAAAATTGCGTTTTCATTA+TGG | - | tig0018442:110329-110348 | Msa1366010:CDS | 25.0% |
| ! | TAATTGTAGTAAAACTTGAC+CGG | + | tig0018442:110414-110433 | None:intergenic | 25.0% |
| !!! | GATAACATACTTTTTCGATT+GGG | - | tig0018442:110449-110468 | Msa1366010:CDS | 25.0% |
| ! | ACTAATCCTTTATATTGGAA+TGG | + | tig0018442:110680-110699 | None:intergenic | 25.0% |
| ! | GATTGACTAATCCTTTATAT+TGG | + | tig0018442:110685-110704 | None:intergenic | 25.0% |
| ! | ATAATAGATAGTAAATGGGT+TGG | - | tig0018442:110707-110726 | Msa1366010:CDS | 25.0% |
| TTTCAAAAAAATACGTCGTC+TGG | - | tig0018442:110199-110218 | Msa1366010:CDS | 30.0% | |
| TTCAAAAAAATACGTCGTCT+GGG | - | tig0018442:110200-110219 | Msa1366010:CDS | 30.0% | |
| ACAATTACTTGAAATGCGTT+TGG | - | tig0018442:110427-110446 | Msa1366010:CDS | 30.0% | |
| !!! | GGATAACATACTTTTTCGAT+TGG | - | tig0018442:110448-110467 | Msa1366010:CDS | 30.0% |
| CATTAACTAAAACATGTCTG+TGG | + | tig0018442:110514-110533 | None:intergenic | 30.0% | |
| !!! | CACAGACATGTTTTAGTTAA+TGG | - | tig0018442:110512-110531 | Msa1366010:CDS | 30.0% |
| TTCGCTGTAATAATATCTTG+AGG | + | tig0018442:110572-110591 | None:intergenic | 30.0% | |
| TCAAGATATTATTACAGCGA+AGG | - | tig0018442:110571-110590 | Msa1366010:CDS | 30.0% | |
| CAAGATATTATTACAGCGAA+GGG | - | tig0018442:110572-110591 | Msa1366010:CDS | 30.0% | |
| CTTGATCCATTCCAATATAA+AGG | - | tig0018442:110671-110690 | Msa1366010:CDS | 30.0% | |
| !!! | CGACGTATTTTTTTGAAACG+AGG | + | tig0018442:110197-110216 | None:intergenic | 35.0% |
| TCAAAAAAATACGTCGTCTG+GGG | - | tig0018442:110201-110220 | Msa1366010:CDS | 35.0% | |
| TACCAGGACTAACTAGTAAA+CGG | - | tig0018442:110228-110247 | Msa1366010:CDS | 35.0% | |
| !!! | CATACTTTTTCGATTGGGTA+TGG | - | tig0018442:110454-110473 | Msa1366010:CDS | 35.0% |
| TCTGTGGTTAACTAATTGAC+GGG | + | tig0018442:110498-110517 | None:intergenic | 35.0% | |
| GTCTGTGGTTAACTAATTGA+CGG | + | tig0018442:110499-110518 | None:intergenic | 35.0% | |
| CAAAAAAATACGTCGTCTGG+GGG | - | tig0018442:110202-110221 | Msa1366010:CDS | 40.0% | |
| !!! | ATTTTTTACTCGAGCGCGAT+TGG | + | tig0018442:110280-110299 | None:intergenic | 40.0% |
| CTTAAATACGTTCGTATCGC+TGG | - | tig0018442:110371-110390 | Msa1366010:CDS | 40.0% | |
| !! | TTAACTAATTGACGGGCTTG+AGG | + | tig0018442:110491-110510 | None:intergenic | 40.0% |
| TGAGGTTTGCAACGATAACT+TGG | + | tig0018442:110554-110573 | None:intergenic | 40.0% | |
| !! | AATGGATTGGCAATTCTTCG+CGG | + | tig0018442:110646-110665 | None:intergenic | 40.0% |
| GGATCAAGAGTCAAATGGAT+TGG | + | tig0018442:110659-110678 | None:intergenic | 40.0% | |
| GGAATGGATCAAGAGTCAAA+TGG | + | tig0018442:110664-110683 | None:intergenic | 40.0% | |
| ACTAGTAAACGGCCTACAGT+TGG | - | tig0018442:110239-110258 | Msa1366010:CDS | 45.0% | |
| CTAAGTTCGCTTCCAACTGT+AGG | + | tig0018442:110254-110273 | None:intergenic | 45.0% | |
| GGAAAAGCGAAAGGTTCAAC+CGG | - | tig0018442:110392-110411 | Msa1366010:CDS | 45.0% | |
| !! | ATGGATTGGCAATTCTTCGC+GGG | + | tig0018442:110645-110664 | None:intergenic | 45.0% |
| GGCCGTTTACTAGTTAGTCC+TGG | + | tig0018442:110233-110252 | None:intergenic | 50.0% | |
| CGTATCGCTGGAAAAGCGAA+AGG | - | tig0018442:110383-110402 | Msa1366010:CDS | 50.0% | |
| !! | TGGATTGGCAATTCTTCGCG+GGG | + | tig0018442:110644-110663 | None:intergenic | 50.0% |
| GATTGGCAATTCTTCGCGGG+GGG | + | tig0018442:110642-110661 | None:intergenic | 55.0% | |
| ! | GGATTGGCAATTCTTCGCGG+GGG | + | tig0018442:110643-110662 | None:intergenic | 55.0% |
| CGTCGTCTGGGGGCTTTACC+AGG | - | tig0018442:110212-110231 | Msa1366010:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018442 | gene | 110176 | 110781 | 110176 | ID=Msa1366010;Name=Msa1366010 |
| tig0018442 | mRNA | 110176 | 110781 | 110176 | ID=Msa1366010-mRNA-1;Parent=Msa1366010;Name=Msa1366010-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|201 |
| tig0018442 | exon | 110176 | 110781 | 110176 | ID=Msa1366010-mRNA-1:exon:14936;Parent=Msa1366010-mRNA-1 |
| tig0018442 | CDS | 110176 | 110781 | 110176 | ID=Msa1366010-mRNA-1:cds;Parent=Msa1366010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
