AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0370210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0370210 MtrunA17_Chr4g0016701 94.142 239 2 3 207 435 1 237 1.26e-153 435
Msa0370210 MtrunA17_CPg0492981 94.142 239 2 3 207 435 1 237 1.26e-153 435
Msa0370210 MtrunA17_Chr4g0015611 94.142 239 2 3 207 435 1 237 1.26e-153 435
Msa0370210 MtrunA17_CPg0492991 90.045 221 5 3 1 204 1 221 8.88e-140 399
Msa0370210 MtrunA17_Chr4g0015601 90.045 221 5 3 1 204 1 221 1.21e-139 399
Msa0370210 MtrunA17_Chr3g0088491 87.143 210 12 3 236 435 2 206 1.76e-107 316
Msa0370210 MtrunA17_Chr4g0016691 91.150 113 4 1 98 204 6 118 1.14e-66 209
Msa0370210 MtrunA17_Chr7g0275151 69.481 154 9 2 287 435 6 126 8.20e-60 191
Msa0370210 MtrunA17_Chr7g0275171 84.536 97 7 1 1 97 1 89 3.08e-55 178
Msa0370210 MtrunA17_Chr4g0016681 94.937 79 2 1 1 77 1 79 1.31e-47 157
Msa0370210 MtrunA17_Chr7g0275161 82.927 82 8 1 129 204 1 82 6.16e-41 140
Msa0370210 MtrunA17_Chr4g0060751 62.667 150 15 1 286 435 13 121 2.54e-39 137
Msa0370210 MtrunA17_Chr6g0460191 74.699 83 21 0 353 435 11 93 1.49e-21 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0370210 ATCG00150.1 86.722 241 20 3 207 435 1 241 3.34e-130 376
Msa0370210 ATCG00160.1 82.353 221 22 3 1 204 1 221 7.69e-125 362

Find 77 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTATACCTGTTATGTTTC+TGG 0.052609 3_1:-67762393 Msa0370210:CDS
ATCTCATTTGGAAACATATC+TGG 0.181531 3_1:-67763521 Msa0370210:CDS
CAACATTTCTATTGGCAAAT+AGG 0.196864 3_1:-67762959 Msa0370210:CDS
AACATTTCTATTGGCAAATA+GGG 0.237546 3_1:-67762958 Msa0370210:CDS
CTAAGATGTTAATCGGTAAA+AGG 0.238850 3_1:+67762519 None:intergenic
GGTCCGTGGGTTCCGTTTAT+TGG 0.248543 3_1:-67762755 Msa0370210:CDS
TTACGCTTTGCCGATATAAA+AGG 0.251568 3_1:+67763859 None:intergenic
TGAAATACCCGCATAGAAAT+AGG 0.255569 3_1:+67762589 None:intergenic
ATGGAAGCTGGAGTTCATTT+TGG 0.255790 3_1:-67763916 Msa0370210:CDS
CCTATACCTGTTATGTTTCT+GGG 0.293135 3_1:-67762392 Msa0370210:CDS
CAAGAGACAATTATCTCATT+TGG 0.294663 3_1:-67763533 Msa0370210:CDS
CTCAAGTACTTATTACCTCT+TGG 0.341108 3_1:-67762919 Msa0370210:CDS
ATCAACGATTATTACAATAT+CGG 0.341941 3_1:+67763471 None:intergenic
TTTATCAGAAGCTTGTGATT+TGG 0.358806 3_1:-67763797 Msa0370210:CDS
CTAATTTGTTAAGAATTAAT+CGG 0.359442 3_1:+67763314 None:intergenic
ATCGAAATATCTGCTAGATC+TGG 0.363586 3_1:+67763367 None:intergenic
CTTCGAGAATGTATCACTTT+GGG 0.388824 3_1:-67763427 Msa0370210:CDS
GGAAAACAATTCTTAATTGT+TGG 0.390734 3_1:-67763754 Msa0370210:CDS
CGGATTTCTAACAACTAGAA+TGG 0.400438 3_1:+67762868 None:intergenic
AAACGAGACTTCGTAAGTTC+AGG 0.412190 3_1:-67763621 Msa0370210:CDS
AAATCTTCTAAGATGTTAAT+CGG 0.412258 3_1:+67762512 None:intergenic
ACCTTAGCTGCGGCTTATAT+AGG 0.418344 3_1:-67762332 None:intergenic
AGTAGTATTTATATCATTTG+TGG 0.424401 3_1:+67762640 None:intergenic
TCAAGTACTTATTACCTCTT+GGG 0.428139 3_1:-67762918 Msa0370210:CDS
TGCAGCCCGTGTTACTGAAT+CGG 0.431042 3_1:+67763714 None:intergenic
GTAGTATTTATATCATTTGT+GGG 0.434707 3_1:+67762641 None:intergenic
TGATCAGCAAGAAGAATATA+CGG 0.437056 3_1:-67763452 Msa0370210:intron
AAGTCGAAAACTAAGTGATA+AGG 0.438506 3_1:+67762481 None:intergenic
AGAAACAAAGTTCCAATAAA+CGG 0.439134 3_1:+67762743 None:intergenic
ACTCAGATTGGAGAAGAATA+TGG 0.441550 3_1:-67762776 Msa0370210:intron
AATAATCCCAGAAACATAAC+AGG 0.443207 3_1:+67762386 None:intergenic
CCCAGAAACATAACAGGTAT+AGG 0.450475 3_1:+67762392 None:intergenic
CCGGACGTTGGAATAGTTTG+CGG 0.455395 3_1:+67762848 None:intergenic
TTGGCCATGATACTCGGAAA+TGG 0.459897 3_1:-67763897 Msa0370210:CDS
AAGTAGGTCAACATTTCTAT+TGG 0.460455 3_1:-67762967 Msa0370210:CDS
TCACGTCTCGGATGAATTCA+AGG 0.477047 3_1:+67762804 None:intergenic
TCTTCGAGAATGTATCACTT+TGG 0.477646 3_1:-67763428 Msa0370210:CDS
AACGAGACTTCGTAAGTTCA+GGG 0.478021 3_1:-67763620 Msa0370210:CDS
TCAACGATTATTACAATATC+GGG 0.480431 3_1:+67763472 None:intergenic
TTGAGAACGGAGCAAAAGAC+AGG 0.482432 3_1:-67763595 Msa0370210:CDS
GATTCCATTTCCGAGTATCA+TGG 0.488914 3_1:+67763893 None:intergenic
TTTGAAGAGATGATGGAAGC+TGG 0.489132 3_1:-67763928 Msa0370210:CDS
ATCGGTAAAAGGATTGGAGT+TGG 0.490463 3_1:+67762530 None:intergenic
GTATCGATTAAACAAATCGT+TGG 0.491426 3_1:+67763400 None:intergenic
GATATATCTGCTGTCGAAGT+AGG 0.493921 3_1:-67762983 Msa0370210:CDS
AGTCGAAAACTAAGTGATAA+GGG 0.500280 3_1:+67762482 None:intergenic
ACCTATATAAGCCGCAGCTA+AGG 0.513359 3_1:+67762331 None:intergenic
GTAAAAGGATTGGAGTTGGT+TGG 0.515104 3_1:+67762534 None:intergenic
GCTATAGCATCATCATTAGC+TGG 0.518853 3_1:+67763343 None:intergenic
TCGAAATATCTGCTAGATCT+GGG 0.525094 3_1:+67763368 None:intergenic
AAAATTATAAAGTTACCTCA+TGG 0.526541 3_1:-67762677 Msa0370210:CDS
ATGTTAATCGGTAAAAGGAT+TGG 0.530907 3_1:+67762524 None:intergenic
CCGCAAACTATTCCAACGTC+CGG 0.541897 3_1:-67762848 Msa0370210:CDS
GATATAAAAGGTGCCATTCG+AGG 0.542260 3_1:+67763871 None:intergenic
AAGAAATTCTGACCGGACGT+TGG 0.546490 3_1:+67762836 None:intergenic
TCTCATTTGGAAACATATCT+GGG 0.550552 3_1:-67763520 Msa0370210:CDS
TCAGTAGCCTATTTCTATGC+GGG 0.553188 3_1:-67762596 Msa0370210:intron
ACATTTCTATTGGCAAATAG+GGG 0.561596 3_1:-67762957 Msa0370210:CDS
GGGTGGCATAAAATATATGA+CGG 0.585418 3_1:-67763500 Msa0370210:CDS
ACAGGTATAGGAACTACTAA+AGG 0.585481 3_1:+67762404 None:intergenic
TAAGTTCAGGGACTTGAGAA+CGG 0.589134 3_1:-67763608 Msa0370210:CDS
GGTGGCATAAAATATATGAC+GGG 0.610359 3_1:-67763499 Msa0370210:CDS
AGCAGCCGATTCAGTAACAC+GGG 0.610911 3_1:-67763719 Msa0370210:CDS
TGGAGAAGAATATGGTCCGT+GGG 0.620080 3_1:-67762768 Msa0370210:CDS
TTGGAGAAGAATATGGTCCG+TGG 0.620994 3_1:-67762769 Msa0370210:CDS
TTTCTGGGATTATTTACAAG+CGG 0.630473 3_1:-67762377 Msa0370210:CDS
ATATTCAAAGAAATTCTGAC+CGG 0.632509 3_1:+67762829 None:intergenic
TCGGAAATGGAATCCTCGAA+TGG 0.635386 3_1:-67763884 Msa0370210:CDS
GTTCCAATAAACGGAACCCA+CGG 0.647484 3_1:+67762752 None:intergenic
AAGCAGCCGATTCAGTAACA+CGG 0.653513 3_1:-67763720 Msa0370210:CDS
GTCAGTAGCCTATTTCTATG+CGG 0.655321 3_1:-67762597 Msa0370210:CDS
GATAGCAATTACAACCCAAG+AGG 0.659110 3_1:+67762904 None:intergenic
TGAGAACGGAGCAAAAGACA+GGG 0.670658 3_1:-67763594 Msa0370210:CDS
GGTGCAGCTAATTCTCCATG+AGG 0.714976 3_1:+67762662 None:intergenic
CATTTGGAAACATATCTGGG+TGG 0.732935 3_1:-67763517 Msa0370210:CDS
GTGGCATAAAATATATGACG+GGG 0.737363 3_1:-67763498 Msa0370210:CDS
TAATTGTCTCTTGAACATAG+CGG 0.783646 3_1:+67763543 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATAAATAAATTTTTAGATT+TGG - chr3_1:67763055-67763074 Msa0370210:intron 10.0%
!! AAAATATATATAACTTGAAA+GGG + chr3_1:67763220-67763239 None:intergenic 10.0%
!! AAAAATATATATAACTTGAA+AGG + chr3_1:67763221-67763240 None:intergenic 10.0%
!!! GATAAATAAATTTTTAGATT+TGG - chr3_1:67763055-67763074 Msa0370210:intron 10.0%
!! AAAATATATATAACTTGAAA+GGG + chr3_1:67763220-67763239 None:intergenic 10.0%
!! AAAAATATATATAACTTGAA+AGG + chr3_1:67763221-67763240 None:intergenic 10.0%
!! GTCATTATGTTAATAAAAAA+TGG - chr3_1:67762611-67762630 Msa0370210:CDS 15.0%
!!! CTAATTTGTTAAGAATTAAT+CGG + chr3_1:67762978-67762997 None:intergenic 15.0%
!!! AATAAATTTTTAGATTTGGT+TGG - chr3_1:67763059-67763078 Msa0370210:intron 15.0%
!!! ATAAATTTTTAGATTTGGTT+GGG - chr3_1:67763060-67763079 Msa0370210:intron 15.0%
!!! ATAAATATTTTGTGATTAGT+AGG - chr3_1:67763135-67763154 Msa0370210:intron 15.0%
!!! TATTTATTTTTGTTTCGAAT+TGG - chr3_1:67763568-67763587 Msa0370210:CDS 15.0%
!! GTCATTATGTTAATAAAAAA+TGG - chr3_1:67762611-67762630 Msa0370210:CDS 15.0%
!!! CTAATTTGTTAAGAATTAAT+CGG + chr3_1:67762978-67762997 None:intergenic 15.0%
!!! AATAAATTTTTAGATTTGGT+TGG - chr3_1:67763059-67763078 Msa0370210:intron 15.0%
!!! ATAAATTTTTAGATTTGGTT+GGG - chr3_1:67763060-67763079 Msa0370210:intron 15.0%
!!! ATAAATATTTTGTGATTAGT+AGG - chr3_1:67763135-67763154 Msa0370210:intron 15.0%
!!! TATTTATTTTTGTTTCGAAT+TGG - chr3_1:67763568-67763587 Msa0370210:CDS 15.0%
!! TATGTTAATAAAAAATGGCT+CGG - chr3_1:67762616-67762635 Msa0370210:CDS 20.0%
!! ATCAACGATTATTACAATAT+CGG + chr3_1:67762821-67762840 None:intergenic 20.0%
!! AAAATTATAAAGTTACCTCA+TGG - chr3_1:67763612-67763631 Msa0370210:CDS 20.0%
!! GTAGTATTTATATCATTTGT+GGG + chr3_1:67763651-67763670 None:intergenic 20.0%
!! AGTAGTATTTATATCATTTG+TGG + chr3_1:67763652-67763671 None:intergenic 20.0%
!!! AAATCTTCTAAGATGTTAAT+CGG + chr3_1:67763780-67763799 None:intergenic 20.0%
!! TATGTTAATAAAAAATGGCT+CGG - chr3_1:67762616-67762635 Msa0370210:CDS 20.0%
!! ATCAACGATTATTACAATAT+CGG + chr3_1:67762821-67762840 None:intergenic 20.0%
!! AAAATTATAAAGTTACCTCA+TGG - chr3_1:67763612-67763631 Msa0370210:CDS 20.0%
!! GTAGTATTTATATCATTTGT+GGG + chr3_1:67763651-67763670 None:intergenic 20.0%
!! AGTAGTATTTATATCATTTG+TGG + chr3_1:67763652-67763671 None:intergenic 20.0%
!!! AAATCTTCTAAGATGTTAAT+CGG + chr3_1:67763780-67763799 None:intergenic 20.0%
! GGAAAACAATTCTTAATTGT+TGG - chr3_1:67762535-67762554 Msa0370210:CDS 25.0%
! TCAACGATTATTACAATATC+GGG + chr3_1:67762820-67762839 None:intergenic 25.0%
!!! ATTAGTTTTTGCAATTTGTG+AGG - chr3_1:67762993-67763012 Msa0370210:CDS 25.0%
!!! TTAGTTTTTGCAATTTGTGA+GGG - chr3_1:67762994-67763013 Msa0370210:CDS 25.0%
! GTAGGTATTCAAAATAGAAA+AGG - chr3_1:67763153-67763172 Msa0370210:intron 25.0%
! AAGGAAATGAAAGTCAAATA+AGG - chr3_1:67763172-67763191 Msa0370210:intron 25.0%
! ATGAAAGTCAAATAAGGAAA+TGG - chr3_1:67763178-67763197 Msa0370210:intron 25.0%
!!! ATATTTTTTTTTTAGAGGGC+AGG - chr3_1:67763233-67763252 Msa0370210:intron 25.0%
!!! TATTTTTTTTTTAGAGGGCA+GGG - chr3_1:67763234-67763253 Msa0370210:intron 25.0%
! AACATTTCTATTGGCAAATA+GGG - chr3_1:67763331-67763350 Msa0370210:CDS 25.0%
! ATATTCAAAGAAATTCTGAC+CGG + chr3_1:67763463-67763482 None:intergenic 25.0%
! AGAAACAAAGTTCCAATAAA+CGG + chr3_1:67763549-67763568 None:intergenic 25.0%
!! GGTAACTTTATAATTTTCCA+AGG + chr3_1:67763609-67763628 None:intergenic 25.0%
!!! AAAAAAGGATTGGCTTATTT+TGG - chr3_1:67763723-67763742 Msa0370210:CDS 25.0%
! GGAAAACAATTCTTAATTGT+TGG - chr3_1:67762535-67762554 Msa0370210:CDS 25.0%
! TCAACGATTATTACAATATC+GGG + chr3_1:67762820-67762839 None:intergenic 25.0%
!!! ATTAGTTTTTGCAATTTGTG+AGG - chr3_1:67762993-67763012 Msa0370210:CDS 25.0%
!!! TTAGTTTTTGCAATTTGTGA+GGG - chr3_1:67762994-67763013 Msa0370210:CDS 25.0%
! GTAGGTATTCAAAATAGAAA+AGG - chr3_1:67763153-67763172 Msa0370210:intron 25.0%
! AAGGAAATGAAAGTCAAATA+AGG - chr3_1:67763172-67763191 Msa0370210:intron 25.0%
! ATGAAAGTCAAATAAGGAAA+TGG - chr3_1:67763178-67763197 Msa0370210:intron 25.0%
!!! ATATTTTTTTTTTAGAGGGC+AGG - chr3_1:67763233-67763252 Msa0370210:intron 25.0%
!!! TATTTTTTTTTTAGAGGGCA+GGG - chr3_1:67763234-67763253 Msa0370210:intron 25.0%
! AACATTTCTATTGGCAAATA+GGG - chr3_1:67763331-67763350 Msa0370210:CDS 25.0%
! ATATTCAAAGAAATTCTGAC+CGG + chr3_1:67763463-67763482 None:intergenic 25.0%
! AGAAACAAAGTTCCAATAAA+CGG + chr3_1:67763549-67763568 None:intergenic 25.0%
!! GGTAACTTTATAATTTTCCA+AGG + chr3_1:67763609-67763628 None:intergenic 25.0%
!!! AAAAAAGGATTGGCTTATTT+TGG - chr3_1:67763723-67763742 Msa0370210:CDS 25.0%
!! CATAACTTTTGAAGAGATGA+TGG - chr3_1:67762354-67762373 Msa0370210:CDS 30.0%
TTTATCAGAAGCTTGTGATT+TGG - chr3_1:67762492-67762511 Msa0370210:CDS 30.0%
TAATTGTCTCTTGAACATAG+CGG + chr3_1:67762749-67762768 None:intergenic 30.0%
CAAGAGACAATTATCTCATT+TGG - chr3_1:67762756-67762775 Msa0370210:CDS 30.0%
ATCTCATTTGGAAACATATC+TGG - chr3_1:67762768-67762787 Msa0370210:CDS 30.0%
TCTCATTTGGAAACATATCT+GGG - chr3_1:67762769-67762788 Msa0370210:CDS 30.0%
TGATCAGCAAGAAGAATATA+CGG - chr3_1:67762837-67762856 Msa0370210:CDS 30.0%
!! GTATCGATTAAACAAATCGT+TGG + chr3_1:67762892-67762911 None:intergenic 30.0%
!! AATTTTTAGATTTGGTTGGG+CGG - chr3_1:67763063-67763082 Msa0370210:intron 30.0%
AAGTAGGTCAACATTTCTAT+TGG - chr3_1:67763322-67763341 Msa0370210:CDS 30.0%
CAACATTTCTATTGGCAAAT+AGG - chr3_1:67763330-67763349 Msa0370210:CDS 30.0%
ACATTTCTATTGGCAAATAG+GGG - chr3_1:67763332-67763351 Msa0370210:CDS 30.0%
TCAAGTACTTATTACCTCTT+GGG - chr3_1:67763371-67763390 Msa0370210:CDS 30.0%
!! ATTTTTGTTTCGAATTGGTC+AGG - chr3_1:67763573-67763592 Msa0370210:CDS 30.0%
!! TTTTTGTTTCGAATTGGTCA+GGG - chr3_1:67763574-67763593 Msa0370210:CDS 30.0%
TATGCGGGTATTTCAAAAAA+AGG - chr3_1:67763708-67763727 Msa0370210:CDS 30.0%
GGGTATTTCAAAAAAAGGAT+TGG - chr3_1:67763713-67763732 Msa0370210:CDS 30.0%
ATGTTAATCGGTAAAAGGAT+TGG + chr3_1:67763768-67763787 None:intergenic 30.0%
CTAAGATGTTAATCGGTAAA+AGG + chr3_1:67763773-67763792 None:intergenic 30.0%
AGTCGAAAACTAAGTGATAA+GGG + chr3_1:67763810-67763829 None:intergenic 30.0%
AAGTCGAAAACTAAGTGATA+AGG + chr3_1:67763811-67763830 None:intergenic 30.0%
!! TCACTTAGTTTTCGACTTTT+CGG - chr3_1:67763813-67763832 Msa0370210:CDS 30.0%
AATAATCCCAGAAACATAAC+AGG + chr3_1:67763906-67763925 None:intergenic 30.0%
!! TTTCTGGGATTATTTACAAG+CGG - chr3_1:67763912-67763931 Msa0370210:CDS 30.0%
!! CATAACTTTTGAAGAGATGA+TGG - chr3_1:67762354-67762373 Msa0370210:CDS 30.0%
TTTATCAGAAGCTTGTGATT+TGG - chr3_1:67762492-67762511 Msa0370210:CDS 30.0%
TAATTGTCTCTTGAACATAG+CGG + chr3_1:67762749-67762768 None:intergenic 30.0%
CAAGAGACAATTATCTCATT+TGG - chr3_1:67762756-67762775 Msa0370210:CDS 30.0%
ATCTCATTTGGAAACATATC+TGG - chr3_1:67762768-67762787 Msa0370210:CDS 30.0%
TCTCATTTGGAAACATATCT+GGG - chr3_1:67762769-67762788 Msa0370210:CDS 30.0%
TGATCAGCAAGAAGAATATA+CGG - chr3_1:67762837-67762856 Msa0370210:CDS 30.0%
!! GTATCGATTAAACAAATCGT+TGG + chr3_1:67762892-67762911 None:intergenic 30.0%
!! AATTTTTAGATTTGGTTGGG+CGG - chr3_1:67763063-67763082 Msa0370210:intron 30.0%
AAGTAGGTCAACATTTCTAT+TGG - chr3_1:67763322-67763341 Msa0370210:CDS 30.0%
CAACATTTCTATTGGCAAAT+AGG - chr3_1:67763330-67763349 Msa0370210:CDS 30.0%
ACATTTCTATTGGCAAATAG+GGG - chr3_1:67763332-67763351 Msa0370210:CDS 30.0%
TCAAGTACTTATTACCTCTT+GGG - chr3_1:67763371-67763390 Msa0370210:CDS 30.0%
!! ATTTTTGTTTCGAATTGGTC+AGG - chr3_1:67763573-67763592 Msa0370210:CDS 30.0%
!! TTTTTGTTTCGAATTGGTCA+GGG - chr3_1:67763574-67763593 Msa0370210:CDS 30.0%
TATGCGGGTATTTCAAAAAA+AGG - chr3_1:67763708-67763727 Msa0370210:CDS 30.0%
GGGTATTTCAAAAAAAGGAT+TGG - chr3_1:67763713-67763732 Msa0370210:CDS 30.0%
ATGTTAATCGGTAAAAGGAT+TGG + chr3_1:67763768-67763787 None:intergenic 30.0%
CTAAGATGTTAATCGGTAAA+AGG + chr3_1:67763773-67763792 None:intergenic 30.0%
AGTCGAAAACTAAGTGATAA+GGG + chr3_1:67763810-67763829 None:intergenic 30.0%
AAGTCGAAAACTAAGTGATA+AGG + chr3_1:67763811-67763830 None:intergenic 30.0%
!! TCACTTAGTTTTCGACTTTT+CGG - chr3_1:67763813-67763832 Msa0370210:CDS 30.0%
AATAATCCCAGAAACATAAC+AGG + chr3_1:67763906-67763925 None:intergenic 30.0%
!! TTTCTGGGATTATTTACAAG+CGG - chr3_1:67763912-67763931 Msa0370210:CDS 30.0%
!! TTCATTTTGGCCATGATACT+CGG - chr3_1:67762386-67762405 Msa0370210:CDS 35.0%
! TCGAATGGCACCTTTTATAT+CGG - chr3_1:67762420-67762439 Msa0370210:CDS 35.0%
TTACGCTTTGCCGATATAAA+AGG + chr3_1:67762433-67762452 None:intergenic 35.0%
TTTATATCGGCAAAGCGTAA+AGG - chr3_1:67762433-67762452 Msa0370210:CDS 35.0%
! GTTAATAAAAAATGGCTCGG+AGG - chr3_1:67762619-67762638 Msa0370210:CDS 35.0%
GGGTGGCATAAAATATATGA+CGG - chr3_1:67762789-67762808 Msa0370210:intron 35.0%
GGTGGCATAAAATATATGAC+GGG - chr3_1:67762790-67762809 Msa0370210:intron 35.0%
GTGGCATAAAATATATGACG+GGG - chr3_1:67762791-67762810 Msa0370210:intron 35.0%
TCTTCGAGAATGTATCACTT+TGG - chr3_1:67762861-67762880 Msa0370210:CDS 35.0%
CTTCGAGAATGTATCACTTT+GGG - chr3_1:67762862-67762881 Msa0370210:CDS 35.0%
TCGAAATATCTGCTAGATCT+GGG + chr3_1:67762924-67762943 None:intergenic 35.0%
ATCGAAATATCTGCTAGATC+TGG + chr3_1:67762925-67762944 None:intergenic 35.0%
CTCAAGTACTTATTACCTCT+TGG - chr3_1:67763370-67763389 Msa0370210:CDS 35.0%
CGGATTTCTAACAACTAGAA+TGG + chr3_1:67763424-67763443 None:intergenic 35.0%
ACTCAGATTGGAGAAGAATA+TGG - chr3_1:67763513-67763532 Msa0370210:CDS 35.0%
!! TTTTGTTTCGAATTGGTCAG+GGG - chr3_1:67763575-67763594 Msa0370210:CDS 35.0%
TGAAATACCCGCATAGAAAT+AGG + chr3_1:67763703-67763722 None:intergenic 35.0%
ACAGGTATAGGAACTACTAA+AGG + chr3_1:67763888-67763907 None:intergenic 35.0%
TCCTATACCTGTTATGTTTC+TGG - chr3_1:67763896-67763915 Msa0370210:CDS 35.0%
CCTATACCTGTTATGTTTCT+GGG - chr3_1:67763897-67763916 Msa0370210:CDS 35.0%
!! TATTTTTGCTACCTTAGCTG+CGG - chr3_1:67763947-67763966 Msa0370210:CDS 35.0%
!! TTCATTTTGGCCATGATACT+CGG - chr3_1:67762386-67762405 Msa0370210:CDS 35.0%
! TCGAATGGCACCTTTTATAT+CGG - chr3_1:67762420-67762439 Msa0370210:CDS 35.0%
TTACGCTTTGCCGATATAAA+AGG + chr3_1:67762433-67762452 None:intergenic 35.0%
TTTATATCGGCAAAGCGTAA+AGG - chr3_1:67762433-67762452 Msa0370210:CDS 35.0%
! GTTAATAAAAAATGGCTCGG+AGG - chr3_1:67762619-67762638 Msa0370210:CDS 35.0%
GGGTGGCATAAAATATATGA+CGG - chr3_1:67762789-67762808 Msa0370210:intron 35.0%
GGTGGCATAAAATATATGAC+GGG - chr3_1:67762790-67762809 Msa0370210:intron 35.0%
GTGGCATAAAATATATGACG+GGG - chr3_1:67762791-67762810 Msa0370210:intron 35.0%
TCTTCGAGAATGTATCACTT+TGG - chr3_1:67762861-67762880 Msa0370210:CDS 35.0%
CTTCGAGAATGTATCACTTT+GGG - chr3_1:67762862-67762881 Msa0370210:CDS 35.0%
TCGAAATATCTGCTAGATCT+GGG + chr3_1:67762924-67762943 None:intergenic 35.0%
ATCGAAATATCTGCTAGATC+TGG + chr3_1:67762925-67762944 None:intergenic 35.0%
CTCAAGTACTTATTACCTCT+TGG - chr3_1:67763370-67763389 Msa0370210:CDS 35.0%
CGGATTTCTAACAACTAGAA+TGG + chr3_1:67763424-67763443 None:intergenic 35.0%
ACTCAGATTGGAGAAGAATA+TGG - chr3_1:67763513-67763532 Msa0370210:CDS 35.0%
!! TTTTGTTTCGAATTGGTCAG+GGG - chr3_1:67763575-67763594 Msa0370210:CDS 35.0%
TGAAATACCCGCATAGAAAT+AGG + chr3_1:67763703-67763722 None:intergenic 35.0%
ACAGGTATAGGAACTACTAA+AGG + chr3_1:67763888-67763907 None:intergenic 35.0%
TCCTATACCTGTTATGTTTC+TGG - chr3_1:67763896-67763915 Msa0370210:CDS 35.0%
CCTATACCTGTTATGTTTCT+GGG - chr3_1:67763897-67763916 Msa0370210:CDS 35.0%
!! TATTTTTGCTACCTTAGCTG+CGG - chr3_1:67763947-67763966 Msa0370210:CDS 35.0%
!! TTTGAAGAGATGATGGAAGC+TGG - chr3_1:67762361-67762380 Msa0370210:CDS 40.0%
! ATGGAAGCTGGAGTTCATTT+TGG - chr3_1:67762373-67762392 Msa0370210:CDS 40.0%
GATTCCATTTCCGAGTATCA+TGG + chr3_1:67762399-67762418 None:intergenic 40.0%
!! GATATAAAAGGTGCCATTCG+AGG + chr3_1:67762421-67762440 None:intergenic 40.0%
! GTTTTTGATGCAGCAAGCAT+GGG - chr3_1:67762514-67762533 Msa0370210:CDS 40.0%
! TCGGAGGTATGTTAACGAAT+TGG - chr3_1:67762635-67762654 Msa0370210:CDS 40.0%
AAACGAGACTTCGTAAGTTC+AGG - chr3_1:67762668-67762687 Msa0370210:CDS 40.0%
AACGAGACTTCGTAAGTTCA+GGG - chr3_1:67762669-67762688 Msa0370210:CDS 40.0%
TAAGTTCAGGGACTTGAGAA+CGG - chr3_1:67762681-67762700 Msa0370210:CDS 40.0%
! AACATAGCGGCATCTCTTTT+TGG + chr3_1:67762736-67762755 None:intergenic 40.0%
CATTTGGAAACATATCTGGG+TGG - chr3_1:67762772-67762791 Msa0370210:CDS 40.0%
GCTATAGCATCATCATTAGC+TGG + chr3_1:67762949-67762968 None:intergenic 40.0%
GATATATCTGCTGTCGAAGT+AGG - chr3_1:67763306-67763325 Msa0370210:intron 40.0%
GATAGCAATTACAACCCAAG+AGG + chr3_1:67763388-67763407 None:intergenic 40.0%
!! GTCAGTAGCCTATTTCTATG+CGG - chr3_1:67763692-67763711 Msa0370210:CDS 40.0%
!! TCAGTAGCCTATTTCTATGC+GGG - chr3_1:67763693-67763712 Msa0370210:CDS 40.0%
! GTAAAAGGATTGGAGTTGGT+TGG + chr3_1:67763758-67763777 None:intergenic 40.0%
ATCGGTAAAAGGATTGGAGT+TGG + chr3_1:67763762-67763781 None:intergenic 40.0%
CCCAGAAACATAACAGGTAT+AGG + chr3_1:67763900-67763919 None:intergenic 40.0%
!! TTTGAAGAGATGATGGAAGC+TGG - chr3_1:67762361-67762380 Msa0370210:CDS 40.0%
! ATGGAAGCTGGAGTTCATTT+TGG - chr3_1:67762373-67762392 Msa0370210:CDS 40.0%
GATTCCATTTCCGAGTATCA+TGG + chr3_1:67762399-67762418 None:intergenic 40.0%
!! GATATAAAAGGTGCCATTCG+AGG + chr3_1:67762421-67762440 None:intergenic 40.0%
! GTTTTTGATGCAGCAAGCAT+GGG - chr3_1:67762514-67762533 Msa0370210:CDS 40.0%
! TCGGAGGTATGTTAACGAAT+TGG - chr3_1:67762635-67762654 Msa0370210:CDS 40.0%
AAACGAGACTTCGTAAGTTC+AGG - chr3_1:67762668-67762687 Msa0370210:CDS 40.0%
AACGAGACTTCGTAAGTTCA+GGG - chr3_1:67762669-67762688 Msa0370210:CDS 40.0%
TAAGTTCAGGGACTTGAGAA+CGG - chr3_1:67762681-67762700 Msa0370210:CDS 40.0%
! AACATAGCGGCATCTCTTTT+TGG + chr3_1:67762736-67762755 None:intergenic 40.0%
CATTTGGAAACATATCTGGG+TGG - chr3_1:67762772-67762791 Msa0370210:CDS 40.0%
GCTATAGCATCATCATTAGC+TGG + chr3_1:67762949-67762968 None:intergenic 40.0%
GATATATCTGCTGTCGAAGT+AGG - chr3_1:67763306-67763325 Msa0370210:intron 40.0%
GATAGCAATTACAACCCAAG+AGG + chr3_1:67763388-67763407 None:intergenic 40.0%
!! GTCAGTAGCCTATTTCTATG+CGG - chr3_1:67763692-67763711 Msa0370210:CDS 40.0%
!! TCAGTAGCCTATTTCTATGC+GGG - chr3_1:67763693-67763712 Msa0370210:CDS 40.0%
! GTAAAAGGATTGGAGTTGGT+TGG + chr3_1:67763758-67763777 None:intergenic 40.0%
ATCGGTAAAAGGATTGGAGT+TGG + chr3_1:67763762-67763781 None:intergenic 40.0%
CCCAGAAACATAACAGGTAT+AGG + chr3_1:67763900-67763919 None:intergenic 40.0%
TTGGCCATGATACTCGGAAA+TGG - chr3_1:67762392-67762411 Msa0370210:CDS 45.0%
TCGGAAATGGAATCCTCGAA+TGG - chr3_1:67762405-67762424 Msa0370210:CDS 45.0%
! GGTTTTTGATGCAGCAAGCA+TGG - chr3_1:67762513-67762532 Msa0370210:CDS 45.0%
! AAGCAGCCGATTCAGTAACA+CGG - chr3_1:67762569-67762588 Msa0370210:intron 45.0%
TTGAGAACGGAGCAAAAGAC+AGG - chr3_1:67762694-67762713 Msa0370210:CDS 45.0%
TGAGAACGGAGCAAAAGACA+GGG - chr3_1:67762695-67762714 Msa0370210:CDS 45.0%
GTTGGGCGGTCATAGATTTA+TGG - chr3_1:67763077-67763096 Msa0370210:intron 45.0%
AAGAAATTCTGACCGGACGT+TGG + chr3_1:67763456-67763475 None:intergenic 45.0%
TCACGTCTCGGATGAATTCA+AGG + chr3_1:67763488-67763507 None:intergenic 45.0%
! TCTGAGTTTTGCTCACGTCT+CGG + chr3_1:67763500-67763519 None:intergenic 45.0%
GACGTGAGCAAAACTCAGAT+TGG - chr3_1:67763501-67763520 Msa0370210:CDS 45.0%
TTGGAGAAGAATATGGTCCG+TGG - chr3_1:67763520-67763539 Msa0370210:CDS 45.0%
TGGAGAAGAATATGGTCCGT+GGG - chr3_1:67763521-67763540 Msa0370210:CDS 45.0%
GTTCCAATAAACGGAACCCA+CGG + chr3_1:67763540-67763559 None:intergenic 45.0%
TTGGCCATGATACTCGGAAA+TGG - chr3_1:67762392-67762411 Msa0370210:CDS 45.0%
TCGGAAATGGAATCCTCGAA+TGG - chr3_1:67762405-67762424 Msa0370210:CDS 45.0%
! GGTTTTTGATGCAGCAAGCA+TGG - chr3_1:67762513-67762532 Msa0370210:CDS 45.0%
! AAGCAGCCGATTCAGTAACA+CGG - chr3_1:67762569-67762588 Msa0370210:intron 45.0%
TTGAGAACGGAGCAAAAGAC+AGG - chr3_1:67762694-67762713 Msa0370210:CDS 45.0%
TGAGAACGGAGCAAAAGACA+GGG - chr3_1:67762695-67762714 Msa0370210:CDS 45.0%
GTTGGGCGGTCATAGATTTA+TGG - chr3_1:67763077-67763096 Msa0370210:intron 45.0%
AAGAAATTCTGACCGGACGT+TGG + chr3_1:67763456-67763475 None:intergenic 45.0%
TCACGTCTCGGATGAATTCA+AGG + chr3_1:67763488-67763507 None:intergenic 45.0%
! TCTGAGTTTTGCTCACGTCT+CGG + chr3_1:67763500-67763519 None:intergenic 45.0%
GACGTGAGCAAAACTCAGAT+TGG - chr3_1:67763501-67763520 Msa0370210:CDS 45.0%
TTGGAGAAGAATATGGTCCG+TGG - chr3_1:67763520-67763539 Msa0370210:CDS 45.0%
TGGAGAAGAATATGGTCCGT+GGG - chr3_1:67763521-67763540 Msa0370210:CDS 45.0%
GTTCCAATAAACGGAACCCA+CGG + chr3_1:67763540-67763559 None:intergenic 45.0%
!!! TATATATATTTTTTTTTTAG+AGG - chr3_1:67763228-67763247 Msa0370210:intron 5.0%
!!! ATATATATTTTTTTTTTAGA+GGG - chr3_1:67763229-67763248 Msa0370210:intron 5.0%
!!! TATATATATTTTTTTTTTAG+AGG - chr3_1:67763228-67763247 Msa0370210:intron 5.0%
!!! ATATATATTTTTTTTTTAGA+GGG - chr3_1:67763229-67763248 Msa0370210:intron 5.0%
! AGCAGCCGATTCAGTAACAC+GGG - chr3_1:67762570-67762589 Msa0370210:intron 50.0%
! TGCAGCCCGTGTTACTGAAT+CGG + chr3_1:67762578-67762597 None:intergenic 50.0%
CCGGACGTTGGAATAGTTTG+CGG + chr3_1:67763444-67763463 None:intergenic 50.0%
CCGCAAACTATTCCAACGTC+CGG - chr3_1:67763441-67763460 Msa0370210:CDS 50.0%
GGTGCAGCTAATTCTCCATG+AGG + chr3_1:67763630-67763649 None:intergenic 50.0%
! AGCAGCCGATTCAGTAACAC+GGG - chr3_1:67762570-67762589 Msa0370210:intron 50.0%
! TGCAGCCCGTGTTACTGAAT+CGG + chr3_1:67762578-67762597 None:intergenic 50.0%
CCGGACGTTGGAATAGTTTG+CGG + chr3_1:67763444-67763463 None:intergenic 50.0%
CCGCAAACTATTCCAACGTC+CGG - chr3_1:67763441-67763460 Msa0370210:CDS 50.0%
GGTGCAGCTAATTCTCCATG+AGG + chr3_1:67763630-67763649 None:intergenic 50.0%
GGTCCGTGGGTTCCGTTTAT+TGG - chr3_1:67763534-67763553 Msa0370210:CDS 55.0%
GGTCCGTGGGTTCCGTTTAT+TGG - chr3_1:67763534-67763553 Msa0370210:CDS 55.0%
! GGTCAGGGGCTCTTTTGCCT+TGG - chr3_1:67763589-67763608 Msa0370210:CDS 60.0%
! GGTCAGGGGCTCTTTTGCCT+TGG - chr3_1:67763589-67763608 Msa0370210:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 67762334 67763977 67762334 ID=Msa0370210;Name=Msa0370210
chr3_1 mRNA 67762334 67763977 67762334 ID=Msa0370210-mRNA-1;Parent=Msa0370210;Name=Msa0370210-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|0|0|7|0|435
chr3_1 exon 67763863 67763977 67763863 ID=Msa0370210-mRNA-1:exon:14064;Parent=Msa0370210-mRNA-1
chr3_1 exon 67763671 67763856 67763671 ID=Msa0370210-mRNA-1:exon:14063;Parent=Msa0370210-mRNA-1
chr3_1 exon 67763486 67763643 67763486 ID=Msa0370210-mRNA-1:exon:14062;Parent=Msa0370210-mRNA-1
chr3_1 exon 67763315 67763467 67763315 ID=Msa0370210-mRNA-1:exon:14061;Parent=Msa0370210-mRNA-1
chr3_1 exon 67762808 67763056 67762808 ID=Msa0370210-mRNA-1:exon:14060;Parent=Msa0370210-mRNA-1
chr3_1 exon 67762597 67762792 67762597 ID=Msa0370210-mRNA-1:exon:14059;Parent=Msa0370210-mRNA-1
chr3_1 exon 67762334 67762581 67762334 ID=Msa0370210-mRNA-1:exon:14058;Parent=Msa0370210-mRNA-1
chr3_1 CDS 67763863 67763977 67763863 ID=Msa0370210-mRNA-1:cds;Parent=Msa0370210-mRNA-1
chr3_1 CDS 67763671 67763856 67763671 ID=Msa0370210-mRNA-1:cds;Parent=Msa0370210-mRNA-1
chr3_1 CDS 67763486 67763643 67763486 ID=Msa0370210-mRNA-1:cds;Parent=Msa0370210-mRNA-1
chr3_1 CDS 67763315 67763467 67763315 ID=Msa0370210-mRNA-1:cds;Parent=Msa0370210-mRNA-1
chr3_1 CDS 67762808 67763056 67762808 ID=Msa0370210-mRNA-1:cds;Parent=Msa0370210-mRNA-1
chr3_1 CDS 67762597 67762792 67762597 ID=Msa0370210-mRNA-1:cds;Parent=Msa0370210-mRNA-1
chr3_1 CDS 67762334 67762581 67762334 ID=Msa0370210-mRNA-1:cds;Parent=Msa0370210-mRNA-1
Gene Sequence

>Msa0370210

ATGACAAAAAGATATTGGAACATAACTTTTGAAGAGATGATGGAAGCTGGAGTTCATTTTGGCCATGATACTCGGAAATGGAATCCTCGAATGGCACCTTTTATATCGGCAAAGCGTATTCATATTACAAATCTTACTCGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTGGTTTTTGATGCAGCAAGCATGGGAAAACAATTCTTAATTGTTGGTACAAAAAAAAAAGCAGCCGATTCAGTAACACGGGCTGCAATAAGAGCTCGATGTCATTATGTTAATAAAAAATGGCTCGGAGAAACGAGACTTCGTAAGTTCAGGGACTTGAGAACGGAGCAAAAGACAGGGAAACTGAACTCTCTTCCAAAAAGAGATGCCGCTATGTTCAAGAGACAATTATCTCATTTGGAAACATATCTGGGTGGCATAAAATATATGACGGGGTTACCCGATATTCAAGAAGAATATACGGCTCTTCGAGAATGTATCACTTTGGGAATTCCAACGATTTGTTTAATCGATACAAATTGTGACCCAGATCTAGCAGATATTTCGATTCCAGCTAATGATGATGCTATAGCTTCAATCCGATTAATTCTTAACAAATTAGGCAATATGAATGTTCTATTATGTTACATCAACACATTAAACAGATTCTATGATATATCTGCTGTCGAAGTAGGTCAACATTTCTATTGGCAAATAGGGGATTTTCAAGTGCATGCTCAAGTACTTATTACCTCTTGGGTTGTAATTGCTATCTTATTAATTTCAACCATTCTAGTTGTTAGAAATCCGCAAACTATTCCAACGTCCGGTCAGAATTTCTTTGAATATGTCCTTGAATTCATCCGAGACATTGGAGAAGAATATGGTCCGTGGGTTCCGTTTATTGGAACTTTGTTTCTATTTATTTTTGTTTCGAATTGGTCAGGGGCTCTTTTGCCTTGGAAAATTATAAAGTTACCTCATGGAGAATTAGCTGCACCCACAAATGATATAAATACTACTGTTGCATTAGCTTTACTTACGTCAGTAGCCTATTTCTATGCGGGATTGGCTTATTTTGGTAAATACATCCAACCAACTCCAATCCTTTTACCGATTAACATCTTAGAAGATTTCACAAAACCCTTATCACTTAGTTTTCGACTTTTCGGAAATATATTAGCTGATGAATTAGCAGTTGTTGTTCTTGTTTCGTTAGTACCTTTAGTAGTTCCTATACCTGTTATGTTTCTGGGATTATTTACAAGCGGTATTCAAGCTCTTATTTTTGCTACCTTAGCTGCGGCTTATATA

Protein sequence

>Msa0370210

MTKRYWNITFEEMMEAGVHFGHDTRKWNPRMAPFISAKRIHITNLTRTARFLSEACDLVFDAASMGKQFLIVGTKKKAADSVTRAAIRARCHYVNKKWLGETRLRKFRDLRTEQKTGKLNSLPKRDAAMFKRQLSHLETYLGGIKYMTGLPDIQEEYTALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLGNMNVLLCYINTLNRFYDISAVEVGQHFYWQIGDFQVHAQVLITSWVVIAILLISTILVVRNPQTIPTSGQNFFEYVLEFIRDIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIKLPHGELAAPTNDINTTVALALLTSVAYFYAGLAYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELAVVVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYI