Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1380710 | YP_009141600.1 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 3.55e-143 | 407 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1380710 | sp|Q9BBT5|RR4_LOTJA | 95.522 | 201 | 9 | 0 | 1 | 201 | 1 | 201 | 8.95e-140 | 391 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1380710 | A0A0F6NLD0 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 1.70e-143 | 407 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0030710 | Msa1380710 | 0.805238 | 1.470355e-49 | -8.615850e-47 |
Msa0034800 | Msa1380710 | 0.803900 | 2.795948e-49 | -8.615850e-47 |
Msa0095150 | Msa1380710 | 0.809903 | 1.503213e-50 | -8.615850e-47 |
Msa0095170 | Msa1380710 | 0.809137 | 2.195117e-50 | -8.615850e-47 |
Msa0095190 | Msa1380710 | 0.822637 | 2.130003e-53 | -8.615850e-47 |
Msa0095210 | Msa1380710 | 0.822438 | 2.368865e-53 | -8.615850e-47 |
Msa0095290 | Msa1380710 | 0.810217 | 1.286528e-50 | -8.615850e-47 |
Msa1354320 | Msa1380710 | 0.826221 | 3.056238e-54 | -8.615850e-47 |
Msa1354340 | Msa1380710 | 0.824449 | 8.022392e-54 | -8.615850e-47 |
Msa1354350 | Msa1380710 | 0.893899 | 4.087341e-75 | -8.615850e-47 |
Msa1354380 | Msa1380710 | 0.878316 | 3.098745e-69 | -8.615850e-47 |
Msa1354390 | Msa1380710 | 0.868828 | 4.883657e-66 | -8.615850e-47 |
Msa1354880 | Msa1380710 | 0.832019 | 1.200007e-55 | -8.615850e-47 |
Msa1354900 | Msa1380710 | 0.845296 | 4.436593e-59 | -8.615850e-47 |
Msa1354910 | Msa1380710 | 0.812002 | 5.278805e-51 | -8.615850e-47 |
Msa1354920 | Msa1380710 | 0.817120 | 3.888288e-52 | -8.615850e-47 |
Msa1354930 | Msa1380710 | 0.840772 | 7.109412e-58 | -8.615850e-47 |
Msa1354950 | Msa1380710 | 0.871254 | 7.861229e-67 | -8.615850e-47 |
Msa1355050 | Msa1380710 | 0.828071 | 1.102153e-54 | -8.615850e-47 |
Msa1355070 | Msa1380710 | 0.842722 | 2.173761e-58 | -8.615850e-47 |
Msa1355080 | Msa1380710 | 0.818407 | 1.992203e-52 | -8.615850e-47 |
Msa1355090 | Msa1380710 | 0.812000 | 5.283900e-51 | -8.615850e-47 |
Msa1355100 | Msa1380710 | 0.847885 | 8.710884e-60 | -8.615850e-47 |
Msa1366000 | Msa1380710 | 0.820462 | 6.774034e-53 | -8.615850e-47 |
Msa1366010 | Msa1380710 | 0.867994 | 9.077407e-66 | -8.615850e-47 |
Msa1366040 | Msa1380710 | 0.824410 | 8.195195e-54 | -8.615850e-47 |
Msa1366050 | Msa1380710 | 0.883534 | 4.136431e-71 | -8.615850e-47 |
Msa1368270 | Msa1380710 | 0.866354 | 3.032066e-65 | -8.615850e-47 |
Msa1368280 | Msa1380710 | 0.872371 | 3.348699e-67 | -8.615850e-47 |
Msa1368290 | Msa1380710 | 0.875657 | 2.593045e-68 | -8.615850e-47 |
Msa1368300 | Msa1380710 | 0.880420 | 5.572151e-70 | -8.615850e-47 |
Msa1380570 | Msa1380710 | 0.821835 | 3.267644e-53 | -8.615850e-47 |
Msa1380590 | Msa1380710 | 0.822642 | 2.123844e-53 | -8.615850e-47 |
Msa1380600 | Msa1380710 | 0.822376 | 2.448193e-53 | -8.615850e-47 |
Msa1380610 | Msa1380710 | 0.803406 | 3.540407e-49 | -8.615850e-47 |
Msa1380620 | Msa1380710 | 0.840245 | 9.767796e-58 | -8.615850e-47 |
Msa1380640 | Msa1380710 | 0.904504 | 1.145897e-79 | -8.615850e-47 |
Msa1380650 | Msa1380710 | 0.839099 | 1.940218e-57 | -8.615850e-47 |
Msa1380710 | Msa1385370 | 0.807023 | 6.189216e-50 | -8.615850e-47 |
Msa1380710 | Msa1385380 | 0.804389 | 2.211944e-49 | -8.615850e-47 |
Msa1380710 | Msa1389990 | 0.813611 | 2.344619e-51 | -8.615850e-47 |
Msa1380710 | Msa1394030 | 0.810611 | 1.057481e-50 | -8.615850e-47 |
Msa1380710 | Msa1394040 | 0.825901 | 3.640538e-54 | -8.615850e-47 |
Msa1380710 | Msa1394060 | 0.852760 | 3.736381e-61 | -8.615850e-47 |
Msa1380710 | Msa1394130 | 0.822907 | 1.842899e-53 | -8.615850e-47 |
Msa1380710 | Msa1394150 | 0.828668 | 7.910543e-55 | -8.615850e-47 |
Msa1380710 | Msa1394160 | 0.813258 | 2.804174e-51 | -8.615850e-47 |
Msa1380710 | Msa1394210 | 0.810522 | 1.105590e-50 | -8.615850e-47 |
Msa1380710 | Msa1394220 | 0.830014 | 3.727575e-55 | -8.615850e-47 |
Msa1380710 | Msa1394230 | 0.857824 | 1.254223e-62 | -8.615850e-47 |
Msa1380710 | Msa1394250 | 0.837046 | 6.548416e-57 | -8.615850e-47 |
Msa1380710 | Msa1398700 | 0.825786 | 3.877636e-54 | -8.615850e-47 |
Msa1380710 | Msa1398710 | 0.804197 | 2.425314e-49 | -8.615850e-47 |
Msa1380710 | Msa1398720 | 0.875607 | 2.696779e-68 | -8.615850e-47 |
Msa1380710 | Msa1400330 | 0.808118 | 3.624423e-50 | -8.615850e-47 |
Msa0727020 | Msa1380710 | 0.808176 | 3.521635e-50 | -8.615850e-47 |
Msa0139800 | Msa1380710 | 0.807844 | 4.144219e-50 | -8.615850e-47 |
Msa0139810 | Msa1380710 | 0.814337 | 1.622047e-51 | -8.615850e-47 |
Msa0173880 | Msa1380710 | 0.841853 | 3.692963e-58 | -8.615850e-47 |
Msa0202640 | Msa1380710 | 0.822926 | 1.823830e-53 | -8.615850e-47 |
Msa0221840 | Msa1380710 | 0.823520 | 1.325376e-53 | -8.615850e-47 |
Msa0225050 | Msa1380710 | 0.805208 | 1.491235e-49 | -8.615850e-47 |
Msa1269400 | Msa1380710 | 0.856653 | 2.782379e-62 | -8.615850e-47 |
Msa1269410 | Msa1380710 | 0.816320 | 5.878011e-52 | -8.615850e-47 |
Msa1269420 | Msa1380710 | 0.871302 | 7.578313e-67 | -8.615850e-47 |
Msa1305090 | Msa1380710 | 0.806167 | 9.380709e-50 | -8.615850e-47 |
Msa0370210 | Msa1380710 | 0.836148 | 1.108952e-56 | -8.615850e-47 |
Msa0398630 | Msa1380710 | 0.828346 | 9.460935e-55 | -8.615850e-47 |
Msa0449920 | Msa1380710 | 0.823577 | 1.284887e-53 | -8.615850e-47 |
Msa0983700 | Msa1380710 | 0.820173 | 7.890600e-53 | -8.615850e-47 |
Msa0983720 | Msa1380710 | 0.839569 | 1.464984e-57 | -8.615850e-47 |
Msa1084630 | Msa1380710 | 0.806450 | 8.179407e-50 | -8.615850e-47 |
Msa1086050 | Msa1380710 | 0.823409 | 1.406660e-53 | -8.615850e-47 |
Msa1086070 | Msa1380710 | 0.842678 | 2.233163e-58 | -8.615850e-47 |
Msa1086080 | Msa1380710 | 0.808814 | 2.574143e-50 | -8.615850e-47 |
Msa1086100 | Msa1380710 | 0.830888 | 2.278279e-55 | -8.615850e-47 |
Msa1086140 | Msa1380710 | 0.838567 | 2.663292e-57 | -8.615850e-47 |
Msa1086150 | Msa1380710 | 0.843945 | 1.025140e-58 | -8.615850e-47 |
Msa1086180 | Msa1380710 | 0.838562 | 2.671422e-57 | -8.615850e-47 |
Msa1086190 | Msa1380710 | 0.807946 | 3.941646e-50 | -8.615850e-47 |
Msa1086200 | Msa1380710 | 0.805459 | 1.321124e-49 | -8.615850e-47 |
Msa1086210 | Msa1380710 | 0.837231 | 5.874093e-57 | -8.615850e-47 |
Msa1086250 | Msa1380710 | 0.829327 | 5.476927e-55 | -8.615850e-47 |
Msa1086260 | Msa1380710 | 0.830462 | 2.897526e-55 | -8.615850e-47 |
Msa1086270 | Msa1380710 | 0.822230 | 2.646972e-53 | -8.615850e-47 |
Msa1086280 | Msa1380710 | 0.826321 | 2.891987e-54 | -8.615850e-47 |
Msa1086300 | Msa1380710 | 0.818117 | 2.317210e-52 | -8.615850e-47 |
Msa1086360 | Msa1380710 | 0.819946 | 8.892665e-53 | -8.615850e-47 |
Msa1086380 | Msa1380710 | 0.831973 | 1.232283e-55 | -8.615850e-47 |
Msa1086430 | Msa1380710 | 0.806889 | 6.606674e-50 | -8.615850e-47 |
Msa1086450 | Msa1380710 | 0.843763 | 1.147061e-58 | -8.615850e-47 |
Msa1086470 | Msa1380710 | 0.842531 | 2.442539e-58 | -8.615850e-47 |
Msa1086660 | Msa1380710 | 0.818040 | 2.411493e-52 | -8.615850e-47 |
Msa1086860 | Msa1380710 | 0.826238 | 3.026893e-54 | -8.615850e-47 |
Msa1086880 | Msa1380710 | 0.834483 | 2.919400e-56 | -8.615850e-47 |
Msa1086890 | Msa1380710 | 0.823748 | 1.172264e-53 | -8.615850e-47 |
Msa1086900 | Msa1380710 | 0.819479 | 1.136627e-52 | -8.615850e-47 |
Msa1086910 | Msa1380710 | 0.843122 | 1.700864e-58 | -8.615850e-47 |
Msa0268170 | Msa1380710 | 0.825959 | 3.527493e-54 | -8.615850e-47 |
Msa0268190 | Msa1380710 | 0.833083 | 6.538929e-56 | -8.615850e-47 |
Msa0268370 | Msa1380710 | 0.823044 | 1.711704e-53 | -8.615850e-47 |
Msa0268390 | Msa1380710 | 0.846067 | 2.741258e-59 | -8.615850e-47 |
Msa0268400 | Msa1380710 | 0.826035 | 3.382991e-54 | -8.615850e-47 |
Msa0268410 | Msa1380710 | 0.838080 | 3.556003e-57 | -8.615850e-47 |
Msa0268430 | Msa1380710 | 0.822780 | 1.972452e-53 | -8.615850e-47 |
Msa0268530 | Msa1380710 | 0.823562 | 1.295330e-53 | -8.615850e-47 |
Msa0268550 | Msa1380710 | 0.836623 | 8.397076e-57 | -8.615850e-47 |
Msa0268560 | Msa1380710 | 0.814594 | 1.422592e-51 | -8.615850e-47 |
Msa0268570 | Msa1380710 | 0.814802 | 1.279483e-51 | -8.615850e-47 |
Msa0268580 | Msa1380710 | 0.840976 | 6.286021e-58 | -8.615850e-47 |
Msa0268630 | Msa1380710 | 0.833726 | 4.519307e-56 | -8.615850e-47 |
Msa0268640 | Msa1380710 | 0.816322 | 5.869096e-52 | -8.615850e-47 |
Msa0268720 | Msa1380710 | 0.833098 | 6.481000e-56 | -8.615850e-47 |
Msa0268740 | Msa1380710 | 0.828253 | 9.963297e-55 | -8.615850e-47 |
Msa0268750 | Msa1380710 | 0.811449 | 6.962589e-51 | -8.615850e-47 |
Msa0268760 | Msa1380710 | 0.800535 | 1.377339e-48 | -8.615850e-47 |
Msa0268830 | Msa1380710 | 0.828222 | 1.013488e-54 | -8.615850e-47 |
Msa0268840 | Msa1380710 | 0.831584 | 1.536659e-55 | -8.615850e-47 |
Msa0268860 | Msa1380710 | 0.811768 | 5.934288e-51 | -8.615850e-47 |
Msa0268920 | Msa1380710 | 0.827446 | 1.557978e-54 | -8.615850e-47 |
Msa0268940 | Msa1380710 | 0.843716 | 1.180723e-58 | -8.615850e-47 |
Msa0268950 | Msa1380710 | 0.811538 | 6.659464e-51 | -8.615850e-47 |
Msa0268960 | Msa1380710 | 0.823299 | 1.492445e-53 | -8.615850e-47 |
Msa0269040 | Msa1380710 | 0.823243 | 1.538614e-53 | -8.615850e-47 |
Msa0269050 | Msa1380710 | 0.836195 | 1.079071e-56 | -8.615850e-47 |
Msa0269070 | Msa1380710 | 0.819633 | 1.048188e-52 | -8.615850e-47 |
Msa0304040 | Msa1380710 | 0.802265 | 6.088998e-49 | -8.615850e-47 |
Msa0344180 | Msa1380710 | 0.824647 | 7.208124e-54 | -8.615850e-47 |
Msa0344190 | Msa1380710 | 0.827189 | 1.794709e-54 | -8.615850e-47 |
Msa0344210 | Msa1380710 | 0.821494 | 3.919561e-53 | -8.615850e-47 |
Msa0344280 | Msa1380710 | 0.816615 | 5.048494e-52 | -8.615850e-47 |
Msa0344300 | Msa1380710 | 0.839438 | 1.584082e-57 | -8.615850e-47 |
Msa0344310 | Msa1380710 | 0.841204 | 5.475709e-58 | -8.615850e-47 |
Msa0344330 | Msa1380710 | 0.830603 | 2.676553e-55 | -8.615850e-47 |
Msa1143120 | Msa1380710 | 0.834115 | 3.611028e-56 | -8.615850e-47 |
Msa1143130 | Msa1380710 | 0.829244 | 5.737035e-55 | -8.615850e-47 |
Msa1143160 | Msa1380710 | 0.830668 | 2.579955e-55 | -8.615850e-47 |
Msa1143170 | Msa1380710 | 0.811941 | 5.441066e-51 | -8.615850e-47 |
Msa1143180 | Msa1380710 | 0.820959 | 5.206581e-53 | -8.615850e-47 |
Msa1199690 | Msa1380710 | 0.803026 | 4.242813e-49 | -8.615850e-47 |
Msa0483990 | Msa1380710 | 0.819671 | 1.027722e-52 | -8.615850e-47 |
Msa0484040 | Msa1380710 | 0.810039 | 1.405497e-50 | -8.615850e-47 |
Msa0495270 | Msa1380710 | 0.800334 | 1.513181e-48 | -8.615850e-47 |
Msa0516340 | Msa1380710 | 0.801662 | 8.100798e-49 | -8.615850e-47 |
Msa0582510 | Msa1380710 | 0.832747 | 7.924840e-56 | -8.615850e-47 |
Msa0582520 | Msa1380710 | 0.845155 | 4.843273e-59 | -8.615850e-47 |
Msa0582540 | Msa1380710 | 0.803580 | 3.256852e-49 | -8.615850e-47 |
Msa0582590 | Msa1380710 | 0.801019 | 1.097107e-48 | -8.615850e-47 |
Msa0582610 | Msa1380710 | 0.820937 | 5.266635e-53 | -8.615850e-47 |
Msa0582630 | Msa1380710 | 0.835446 | 1.670118e-56 | -8.615850e-47 |
Msa0582640 | Msa1380710 | 0.808524 | 2.968684e-50 | -8.615850e-47 |
Msa0582650 | Msa1380710 | 0.809604 | 1.743440e-50 | -8.615850e-47 |
Msa0582660 | Msa1380710 | 0.828677 | 7.871135e-55 | -8.615850e-47 |
Msa0582690 | Msa1380710 | 0.832071 | 1.164994e-55 | -8.615850e-47 |
Msa0582700 | Msa1380710 | 0.837204 | 5.965193e-57 | -8.615850e-47 |
Msa0582720 | Msa1380710 | 0.836335 | 9.939706e-57 | -8.615850e-47 |
Msa0582750 | Msa1380710 | 0.838188 | 3.336156e-57 | -8.615850e-47 |
Msa0582760 | Msa1380710 | 0.825878 | 3.685858e-54 | -8.615850e-47 |
Msa0582770 | Msa1380710 | 0.810826 | 9.500690e-51 | -8.615850e-47 |
Msa0582780 | Msa1380710 | 0.834672 | 2.617427e-56 | -8.615850e-47 |
Msa0582810 | Msa1380710 | 0.829180 | 5.947248e-55 | -8.615850e-47 |
Msa0582820 | Msa1380710 | 0.832435 | 9.469354e-56 | -8.615850e-47 |
Msa0582840 | Msa1380710 | 0.824318 | 8.613171e-54 | -8.615850e-47 |
Msa0582890 | Msa1380710 | 0.832961 | 7.009873e-56 | -8.615850e-47 |
Msa0582910 | Msa1380710 | 0.832016 | 1.202110e-55 | -8.615850e-47 |
Msa0582920 | Msa1380710 | 0.814724 | 1.331554e-51 | -8.615850e-47 |
Msa0582930 | Msa1380710 | 0.823303 | 1.489570e-53 | -8.615850e-47 |
Msa0867640 | Msa1380710 | 0.840713 | 7.368348e-58 | -8.615850e-47 |
Msa0867650 | Msa1380710 | 0.822844 | 1.906244e-53 | -8.615850e-47 |
Msa0883880 | Msa1380710 | 0.810821 | 9.524092e-51 | -8.615850e-47 |
Msa0924850 | Msa1380710 | 0.823308 | 1.485479e-53 | -8.615850e-47 |
Msa0924870 | Msa1380710 | 0.840927 | 6.475883e-58 | -8.615850e-47 |
Msa0924880 | Msa1380710 | 0.808571 | 2.901722e-50 | -8.615850e-47 |
Msa0924890 | Msa1380710 | 0.803621 | 3.194706e-49 | -8.615850e-47 |
Msa0924990 | Msa1380710 | 0.821718 | 3.478790e-53 | -8.615850e-47 |
Msa0925040 | Msa1380710 | 0.841668 | 4.131609e-58 | -8.615850e-47 |
Msa0931070 | Msa1380710 | 0.834071 | 3.705195e-56 | -8.615850e-47 |
Msa0931080 | Msa1380710 | 0.834922 | 2.264819e-56 | -8.615850e-47 |
Msa0931100 | Msa1380710 | 0.832481 | 9.224811e-56 | -8.615850e-47 |
Msa0931110 | Msa1380710 | 0.815577 | 8.607416e-52 | -8.615850e-47 |
Msa0931130 | Msa1380710 | 0.838839 | 2.265673e-57 | -8.615850e-47 |
Msa0931140 | Msa1380710 | 0.841492 | 4.598471e-58 | -8.615850e-47 |
Msa0931160 | Msa1380710 | 0.815415 | 9.352699e-52 | -8.615850e-47 |
Msa0931190 | Msa1380710 | 0.846135 | 2.626550e-59 | -8.615850e-47 |
Msa0931210 | Msa1380710 | 0.830950 | 2.199781e-55 | -8.615850e-47 |
Msa0931220 | Msa1380710 | 0.804473 | 2.124250e-49 | -8.615850e-47 |
Msa0931230 | Msa1380710 | 0.825964 | 3.516977e-54 | -8.615850e-47 |
Msa0931240 | Msa1380710 | 0.829208 | 5.853852e-55 | -8.615850e-47 |
Msa0931260 | Msa1380710 | 0.822384 | 2.438409e-53 | -8.615850e-47 |
Msa0931270 | Msa1380710 | 0.821334 | 4.266737e-53 | -8.615850e-47 |
Msa0967920 | Msa1380710 | 0.802261 | 6.101984e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1380710 | MtrunA17_Chr7g0229301 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
Msa1380710 | MtrunA17_Chr6g0454441 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
Msa1380710 | MtrunA17_Chr4g0016451 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
Msa1380710 | MtrunA17_Chr6g0466281 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
Msa1380710 | MtrunA17_CPg0493311 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
Msa1380710 | MtrunA17_Chr7g0229661 | 84.080 | 201 | 13 | 1 | 1 | 201 | 1 | 182 | 1.89e-115 | 327 |
Msa1380710 | MtrunA17_Chr4g0015291 | 97.436 | 156 | 4 | 0 | 1 | 156 | 1 | 156 | 3.32e-108 | 307 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1380710 | ATCG00380.1 | 88.060 | 201 | 24 | 0 | 1 | 201 | 1 | 201 | 2.12e-126 | 355 |
Find 33 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCAAATAATAGATAGTAAA+TGG | 0.189787 | tig0020386:-131681 | Msa1380710:CDS |
GATTGACTAATCCTTTATAT+TGG | 0.284280 | tig0020386:+131701 | None:intergenic |
CTTGATCCATTCCAATATAA+AGG | 0.291752 | tig0020386:-131712 | Msa1380710:CDS |
CTTAAATACGTTCGTATCGC+TGG | 0.342652 | tig0020386:-132012 | Msa1380710:CDS |
ACAATTACTTGAAATGCGTT+TGG | 0.359489 | tig0020386:-131956 | Msa1380710:CDS |
TTTGAAAATTAATGAATTGC+TGG | 0.365999 | tig0020386:-131653 | Msa1380710:CDS |
ATGGATTGGCAATTCTTCGC+GGG | 0.450528 | tig0020386:+131741 | None:intergenic |
TACCAGGACTAACTAGTAAA+CGG | 0.463029 | tig0020386:-132155 | Msa1380710:CDS |
TGAGGTTTGCAACGATAACT+TGG | 0.468099 | tig0020386:+131832 | None:intergenic |
ACTAATCCTTTATATTGGAA+TGG | 0.475526 | tig0020386:+131706 | None:intergenic |
GTCTGTGGTTAACTAATTGA+CGG | 0.477609 | tig0020386:+131887 | None:intergenic |
TCAAATAATAGATAGTAAAT+GGG | 0.487910 | tig0020386:-131680 | Msa1380710:CDS |
ATAATAGATAGTAAATGGGT+TGG | 0.504615 | tig0020386:-131676 | Msa1380710:CDS |
CTAAGTTCGCTTCCAACTGT+AGG | 0.508663 | tig0020386:+132132 | None:intergenic |
GGATCAAGAGTCAAATGGAT+TGG | 0.511159 | tig0020386:+131727 | None:intergenic |
GGAAAAGCGAAAGGTTCAAC+CGG | 0.516182 | tig0020386:-131991 | Msa1380710:CDS |
TCTGTGGTTAACTAATTGAC+GGG | 0.521261 | tig0020386:+131888 | None:intergenic |
GGCCGTTTACTAGTTAGTCC+TGG | 0.527000 | tig0020386:+132153 | None:intergenic |
AATGGATTGGCAATTCTTCG+CGG | 0.545268 | tig0020386:+131740 | None:intergenic |
TCAAGATATTATTACAGCGA+AGG | 0.559737 | tig0020386:-131812 | Msa1380710:CDS |
TTCGCTGTAATAATATCTTG+AGG | 0.560954 | tig0020386:+131814 | None:intergenic |
TAATTGTAGTAAAACTTGAC+CGG | 0.568250 | tig0020386:+131972 | None:intergenic |
ACTAGTAAACGGCCTACAGT+TGG | 0.568372 | tig0020386:-132144 | Msa1380710:CDS |
CAAGATATTATTACAGCGAA+GGG | 0.569002 | tig0020386:-131811 | Msa1380710:CDS |
TTAACTAATTGACGGGCTTG+AGG | 0.581554 | tig0020386:+131895 | None:intergenic |
GGAATGGATCAAGAGTCAAA+TGG | 0.582974 | tig0020386:+131722 | None:intergenic |
GATTGGCAATTCTTCGCGGG+GGG | 0.584547 | tig0020386:+131744 | None:intergenic |
TGGATTGGCAATTCTTCGCG+GGG | 0.610754 | tig0020386:+131742 | None:intergenic |
TGTTTATGTCACGTTACAGA+GGG | 0.632465 | tig0020386:-132212 | None:intergenic |
GTGTTTATGTCACGTTACAG+AGG | 0.633128 | tig0020386:-132213 | None:intergenic |
CGTATCGCTGGAAAAGCGAA+AGG | 0.633501 | tig0020386:-132000 | Msa1380710:CDS |
CATTAACTAAAACATGTCTG+TGG | 0.663264 | tig0020386:+131872 | None:intergenic |
GGATTGGCAATTCTTCGCGG+GGG | 0.681198 | tig0020386:+131743 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATCAAATAATAGATAGTAAA+TGG | - | tig0020386:132150-132169 | Msa1380710:CDS | 15.0% |
!! | TCAAATAATAGATAGTAAAT+GGG | - | tig0020386:132151-132170 | Msa1380710:CDS | 15.0% |
!! | TTTGAAAATTAATGAATTGC+TGG | - | tig0020386:132178-132197 | Msa1380710:CDS | 20.0% |
!! | CAAAAATTGCGTTTTCATTA+TGG | - | tig0020386:131777-131796 | Msa1380710:CDS | 25.0% |
! | TAATTGTAGTAAAACTTGAC+CGG | + | tig0020386:131862-131881 | None:intergenic | 25.0% |
!!! | GATAACATACTTTTTCGATT+GGG | - | tig0020386:131897-131916 | Msa1380710:CDS | 25.0% |
! | ACTAATCCTTTATATTGGAA+TGG | + | tig0020386:132128-132147 | None:intergenic | 25.0% |
! | GATTGACTAATCCTTTATAT+TGG | + | tig0020386:132133-132152 | None:intergenic | 25.0% |
! | ATAATAGATAGTAAATGGGT+TGG | - | tig0020386:132155-132174 | Msa1380710:CDS | 25.0% |
TTTCAAAAAAATACGTCGTC+TGG | - | tig0020386:131647-131666 | Msa1380710:CDS | 30.0% | |
TTCAAAAAAATACGTCGTCT+GGG | - | tig0020386:131648-131667 | Msa1380710:CDS | 30.0% | |
ACAATTACTTGAAATGCGTT+TGG | - | tig0020386:131875-131894 | Msa1380710:CDS | 30.0% | |
!!! | GGATAACATACTTTTTCGAT+TGG | - | tig0020386:131896-131915 | Msa1380710:CDS | 30.0% |
CATTAACTAAAACATGTCTG+TGG | + | tig0020386:131962-131981 | None:intergenic | 30.0% | |
!!! | CACAGACATGTTTTAGTTAA+TGG | - | tig0020386:131960-131979 | Msa1380710:CDS | 30.0% |
TTCGCTGTAATAATATCTTG+AGG | + | tig0020386:132020-132039 | None:intergenic | 30.0% | |
TCAAGATATTATTACAGCGA+AGG | - | tig0020386:132019-132038 | Msa1380710:CDS | 30.0% | |
CAAGATATTATTACAGCGAA+GGG | - | tig0020386:132020-132039 | Msa1380710:CDS | 30.0% | |
CTTGATCCATTCCAATATAA+AGG | - | tig0020386:132119-132138 | Msa1380710:CDS | 30.0% | |
!!! | CGACGTATTTTTTTGAAACG+AGG | + | tig0020386:131645-131664 | None:intergenic | 35.0% |
TCAAAAAAATACGTCGTCTG+GGG | - | tig0020386:131649-131668 | Msa1380710:CDS | 35.0% | |
TACCAGGACTAACTAGTAAA+CGG | - | tig0020386:131676-131695 | Msa1380710:CDS | 35.0% | |
!!! | CATACTTTTTCGATTGGGTA+TGG | - | tig0020386:131902-131921 | Msa1380710:CDS | 35.0% |
TCTGTGGTTAACTAATTGAC+GGG | + | tig0020386:131946-131965 | None:intergenic | 35.0% | |
GTCTGTGGTTAACTAATTGA+CGG | + | tig0020386:131947-131966 | None:intergenic | 35.0% | |
CAAAAAAATACGTCGTCTGG+GGG | - | tig0020386:131650-131669 | Msa1380710:CDS | 40.0% | |
!!! | ATTTTTTACTCGAGCGCGAT+TGG | + | tig0020386:131728-131747 | None:intergenic | 40.0% |
CTTAAATACGTTCGTATCGC+TGG | - | tig0020386:131819-131838 | Msa1380710:CDS | 40.0% | |
!! | TTAACTAATTGACGGGCTTG+AGG | + | tig0020386:131939-131958 | None:intergenic | 40.0% |
TGAGGTTTGCAACGATAACT+TGG | + | tig0020386:132002-132021 | None:intergenic | 40.0% | |
!! | AATGGATTGGCAATTCTTCG+CGG | + | tig0020386:132094-132113 | None:intergenic | 40.0% |
GGATCAAGAGTCAAATGGAT+TGG | + | tig0020386:132107-132126 | None:intergenic | 40.0% | |
GGAATGGATCAAGAGTCAAA+TGG | + | tig0020386:132112-132131 | None:intergenic | 40.0% | |
ACTAGTAAACGGCCTACAGT+TGG | - | tig0020386:131687-131706 | Msa1380710:CDS | 45.0% | |
CTAAGTTCGCTTCCAACTGT+AGG | + | tig0020386:131702-131721 | None:intergenic | 45.0% | |
GGAAAAGCGAAAGGTTCAAC+CGG | - | tig0020386:131840-131859 | Msa1380710:CDS | 45.0% | |
!! | ATGGATTGGCAATTCTTCGC+GGG | + | tig0020386:132093-132112 | None:intergenic | 45.0% |
GGCCGTTTACTAGTTAGTCC+TGG | + | tig0020386:131681-131700 | None:intergenic | 50.0% | |
CGTATCGCTGGAAAAGCGAA+AGG | - | tig0020386:131831-131850 | Msa1380710:CDS | 50.0% | |
!! | TGGATTGGCAATTCTTCGCG+GGG | + | tig0020386:132092-132111 | None:intergenic | 50.0% |
GATTGGCAATTCTTCGCGGG+GGG | + | tig0020386:132090-132109 | None:intergenic | 55.0% | |
! | GGATTGGCAATTCTTCGCGG+GGG | + | tig0020386:132091-132110 | None:intergenic | 55.0% |
CGTCGTCTGGGGGCTTTACC+AGG | - | tig0020386:131660-131679 | Msa1380710:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0020386 | gene | 131624 | 132229 | 131624 | ID=Msa1380710;Name=Msa1380710 |
tig0020386 | mRNA | 131624 | 132229 | 131624 | ID=Msa1380710-mRNA-1;Parent=Msa1380710;Name=Msa1380710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|201 |
tig0020386 | exon | 131624 | 132229 | 131624 | ID=Msa1380710-mRNA-1:exon:7181;Parent=Msa1380710-mRNA-1 |
tig0020386 | CDS | 131624 | 132229 | 131624 | ID=Msa1380710-mRNA-1:cds;Parent=Msa1380710-mRNA-1 |
Gene Sequence |
Protein sequence |