Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368280 | YP_009141600.1 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 3.55e-143 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368280 | sp|Q9BBT5|RR4_LOTJA | 95.522 | 201 | 9 | 0 | 1 | 201 | 1 | 201 | 8.95e-140 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368280 | A0A0F6NLD0 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 1.70e-143 | 407 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028410 | Msa1368280 | 0.809138 | 2.194555e-50 | -8.615850e-47 |
| Msa0028450 | Msa1368280 | 0.811728 | 6.053709e-51 | -8.615850e-47 |
| Msa0030710 | Msa1368280 | 0.837005 | 6.709631e-57 | -8.615850e-47 |
| Msa0078110 | Msa1368280 | 0.805614 | 1.226265e-49 | -8.615850e-47 |
| Msa0095170 | Msa1368280 | 0.830853 | 2.323874e-55 | -8.615850e-47 |
| Msa0095190 | Msa1368280 | 0.843834 | 1.098291e-58 | -8.615850e-47 |
| Msa0095210 | Msa1368280 | 0.838062 | 3.593351e-57 | -8.615850e-47 |
| Msa0095290 | Msa1368280 | 0.848802 | 4.859759e-60 | -8.615850e-47 |
| Msa0102290 | Msa1368280 | 0.816926 | 4.298134e-52 | -8.615850e-47 |
| Msa1354320 | Msa1368280 | 0.817986 | 2.480735e-52 | -8.615850e-47 |
| Msa1354330 | Msa1368280 | 0.835541 | 1.579942e-56 | -8.615850e-47 |
| Msa1354340 | Msa1368280 | 0.805349 | 1.393505e-49 | -8.615850e-47 |
| Msa1354350 | Msa1368280 | 0.864827 | 9.189815e-65 | -8.615850e-47 |
| Msa1354380 | Msa1368280 | 0.900046 | 1.083742e-77 | -8.615850e-47 |
| Msa1354390 | Msa1368280 | 0.858073 | 1.058336e-62 | -8.615850e-47 |
| Msa1354880 | Msa1368280 | 0.833828 | 4.260948e-56 | -8.615850e-47 |
| Msa1354900 | Msa1368280 | 0.852669 | 3.966471e-61 | -8.615850e-47 |
| Msa1354910 | Msa1368280 | 0.821758 | 3.404641e-53 | -8.615850e-47 |
| Msa1354920 | Msa1368280 | 0.801175 | 1.019406e-48 | -8.615850e-47 |
| Msa1354930 | Msa1368280 | 0.836625 | 8.384202e-57 | -8.615850e-47 |
| Msa1354950 | Msa1368280 | 0.839557 | 1.475457e-57 | -8.615850e-47 |
| Msa1355050 | Msa1368280 | 0.836381 | 9.676902e-57 | -8.615850e-47 |
| Msa1355070 | Msa1368280 | 0.849468 | 3.172458e-60 | -8.615850e-47 |
| Msa1355080 | Msa1368280 | 0.831821 | 1.343193e-55 | -8.615850e-47 |
| Msa1355090 | Msa1368280 | 0.810148 | 1.330941e-50 | -8.615850e-47 |
| Msa1355100 | Msa1368280 | 0.840650 | 7.654459e-58 | -8.615850e-47 |
| Msa1365960 | Msa1368280 | 0.810020 | 1.418731e-50 | -8.615850e-47 |
| Msa1366000 | Msa1368280 | 0.849333 | 3.458664e-60 | -8.615850e-47 |
| Msa1366010 | Msa1368280 | 0.833265 | 5.890501e-56 | -8.615850e-47 |
| Msa1366040 | Msa1368280 | 0.824715 | 6.946598e-54 | -8.615850e-47 |
| Msa1366050 | Msa1368280 | 0.884140 | 2.471960e-71 | -8.615850e-47 |
| Msa1368270 | Msa1368280 | 0.857443 | 1.626773e-62 | -8.615850e-47 |
| Msa1368280 | Msa1368290 | 0.876455 | 1.377264e-68 | -8.615850e-47 |
| Msa1368280 | Msa1368300 | 0.898980 | 3.114451e-77 | -8.615850e-47 |
| Msa1368280 | Msa1374610 | 0.804500 | 2.096501e-49 | -8.615850e-47 |
| Msa1368280 | Msa1380570 | 0.841086 | 5.879582e-58 | -8.615850e-47 |
| Msa1368280 | Msa1380590 | 0.829885 | 4.007614e-55 | -8.615850e-47 |
| Msa1368280 | Msa1380600 | 0.830825 | 2.361393e-55 | -8.615850e-47 |
| Msa1368280 | Msa1380610 | 0.818637 | 1.766851e-52 | -8.615850e-47 |
| Msa1368280 | Msa1380620 | 0.824661 | 7.151893e-54 | -8.615850e-47 |
| Msa1368280 | Msa1380640 | 0.883460 | 4.403574e-71 | -8.615850e-47 |
| Msa1368280 | Msa1380710 | 0.872371 | 3.348699e-67 | -8.615850e-47 |
| Msa1368280 | Msa1389990 | 0.811552 | 6.611418e-51 | -8.615850e-47 |
| Msa1368280 | Msa1394030 | 0.801693 | 7.982267e-49 | -8.615850e-47 |
| Msa1368280 | Msa1394040 | 0.826160 | 3.160086e-54 | -8.615850e-47 |
| Msa1368280 | Msa1394060 | 0.855313 | 6.858088e-62 | -8.615850e-47 |
| Msa1368280 | Msa1394130 | 0.817466 | 3.250350e-52 | -8.615850e-47 |
| Msa1368280 | Msa1394150 | 0.832185 | 1.091645e-55 | -8.615850e-47 |
| Msa1368280 | Msa1394160 | 0.803395 | 3.558428e-49 | -8.615850e-47 |
| Msa1368280 | Msa1394170 | 0.817066 | 3.998011e-52 | -8.615850e-47 |
| Msa1368280 | Msa1394210 | 0.827009 | 1.982336e-54 | -8.615850e-47 |
| Msa1368280 | Msa1394220 | 0.864064 | 1.591162e-64 | -8.615850e-47 |
| Msa1368280 | Msa1394230 | 0.843662 | 1.221035e-58 | -8.615850e-47 |
| Msa1368280 | Msa1394250 | 0.835050 | 2.102424e-56 | -8.615850e-47 |
| Msa1368280 | Msa1398700 | 0.848799 | 4.868830e-60 | -8.615850e-47 |
| Msa1368280 | Msa1398710 | 0.837109 | 6.310472e-57 | -8.615850e-47 |
| Msa1368280 | Msa1398720 | 0.882507 | 9.831685e-71 | -8.615850e-47 |
| Msa1368280 | Msa1400330 | 0.835900 | 1.282054e-56 | -8.615850e-47 |
| Msa0616570 | Msa1368280 | 0.801066 | 1.073161e-48 | -8.615850e-47 |
| Msa0699900 | Msa1368280 | 0.801850 | 7.412009e-49 | -8.615850e-47 |
| Msa0704750 | Msa1368280 | 0.826490 | 2.637161e-54 | -8.615850e-47 |
| Msa0707870 | Msa1368280 | 0.809839 | 1.551425e-50 | -8.615850e-47 |
| Msa0708120 | Msa1368280 | 0.814085 | 1.843796e-51 | -8.615850e-47 |
| Msa0727020 | Msa1368280 | 0.808429 | 3.110104e-50 | -8.615850e-47 |
| Msa0811710 | Msa1368280 | 0.804841 | 1.779967e-49 | -8.615850e-47 |
| Msa0822380 | Msa1368280 | 0.807595 | 4.682444e-50 | -8.615850e-47 |
| Msa0124070 | Msa1368280 | 0.817563 | 3.090079e-52 | -8.615850e-47 |
| Msa0147070 | Msa1368280 | 0.804459 | 2.138961e-49 | -8.615850e-47 |
| Msa0170550 | Msa1368280 | 0.815472 | 9.085001e-52 | -8.615850e-47 |
| Msa0173880 | Msa1368280 | 0.822996 | 1.756694e-53 | -8.615850e-47 |
| Msa0186750 | Msa1368280 | 0.803188 | 3.927435e-49 | -8.615850e-47 |
| Msa0202640 | Msa1368280 | 0.817270 | 3.598160e-52 | -8.615850e-47 |
| Msa0221840 | Msa1368280 | 0.816850 | 4.471374e-52 | -8.615850e-47 |
| Msa0225050 | Msa1368280 | 0.807060 | 6.076761e-50 | -8.615850e-47 |
| Msa1251890 | Msa1368280 | 0.803500 | 3.384141e-49 | -8.615850e-47 |
| Msa1267800 | Msa1368280 | 0.816886 | 4.387838e-52 | -8.615850e-47 |
| Msa1269400 | Msa1368280 | 0.843566 | 1.294963e-58 | -8.615850e-47 |
| Msa1269420 | Msa1368280 | 0.856226 | 3.712244e-62 | -8.615850e-47 |
| Msa1305090 | Msa1368280 | 0.812161 | 4.872754e-51 | -8.615850e-47 |
| Msa0370210 | Msa1368280 | 0.821133 | 4.747225e-53 | -8.615850e-47 |
| Msa0398630 | Msa1368280 | 0.817025 | 4.084999e-52 | -8.615850e-47 |
| Msa0449920 | Msa1368280 | 0.812676 | 3.759954e-51 | -8.615850e-47 |
| Msa0481580 | Msa1368280 | 0.801009 | 1.102225e-48 | -8.615850e-47 |
| Msa0983700 | Msa1368280 | 0.822256 | 2.610357e-53 | -8.615850e-47 |
| Msa0983720 | Msa1368280 | 0.849956 | 2.317376e-60 | -8.615850e-47 |
| Msa1084630 | Msa1368280 | 0.834083 | 3.680158e-56 | -8.615850e-47 |
| Msa1086050 | Msa1368280 | 0.829532 | 4.883273e-55 | -8.615850e-47 |
| Msa1086070 | Msa1368280 | 0.842361 | 2.709710e-58 | -8.615850e-47 |
| Msa1086080 | Msa1368280 | 0.827767 | 1.304345e-54 | -8.615850e-47 |
| Msa1086100 | Msa1368280 | 0.838583 | 2.638491e-57 | -8.615850e-47 |
| Msa1086140 | Msa1368280 | 0.837736 | 4.360232e-57 | -8.615850e-47 |
| Msa1086150 | Msa1368280 | 0.843601 | 1.267320e-58 | -8.615850e-47 |
| Msa1086180 | Msa1368280 | 0.842780 | 2.098508e-58 | -8.615850e-47 |
| Msa1086190 | Msa1368280 | 0.827920 | 1.198266e-54 | -8.615850e-47 |
| Msa1086200 | Msa1368280 | 0.801586 | 8.395814e-49 | -8.615850e-47 |
| Msa1086210 | Msa1368280 | 0.839197 | 1.830211e-57 | -8.615850e-47 |
| Msa1086250 | Msa1368280 | 0.800779 | 1.228045e-48 | -8.615850e-47 |
| Msa1086260 | Msa1368280 | 0.830611 | 2.664161e-55 | -8.615850e-47 |
| Msa1086270 | Msa1368280 | 0.824116 | 9.607873e-54 | -8.615850e-47 |
| Msa1086280 | Msa1368280 | 0.839019 | 2.034605e-57 | -8.615850e-47 |
| Msa1086300 | Msa1368280 | 0.813626 | 2.327279e-51 | -8.615850e-47 |
| Msa1086360 | Msa1368280 | 0.820968 | 5.182545e-53 | -8.615850e-47 |
| Msa1086380 | Msa1368280 | 0.844950 | 5.501133e-59 | -8.615850e-47 |
| Msa1086430 | Msa1368280 | 0.812920 | 3.324732e-51 | -8.615850e-47 |
| Msa1086450 | Msa1368280 | 0.848230 | 6.995305e-60 | -8.615850e-47 |
| Msa1086470 | Msa1368280 | 0.837448 | 5.168007e-57 | -8.615850e-47 |
| Msa1086660 | Msa1368280 | 0.820875 | 5.444660e-53 | -8.615850e-47 |
| Msa1086830 | Msa1368280 | 0.800454 | 1.430646e-48 | -8.615850e-47 |
| Msa1086860 | Msa1368280 | 0.828387 | 9.247953e-55 | -8.615850e-47 |
| Msa1086880 | Msa1368280 | 0.852067 | 5.888129e-61 | -8.615850e-47 |
| Msa1086890 | Msa1368280 | 0.832556 | 8.839047e-56 | -8.615850e-47 |
| Msa1086900 | Msa1368280 | 0.806201 | 9.227367e-50 | -8.615850e-47 |
| Msa1086910 | Msa1368280 | 0.843482 | 1.363929e-58 | -8.615850e-47 |
| Msa0268170 | Msa1368280 | 0.840565 | 8.054531e-58 | -8.615850e-47 |
| Msa0268190 | Msa1368280 | 0.828307 | 9.666546e-55 | -8.615850e-47 |
| Msa0268370 | Msa1368280 | 0.826012 | 3.425608e-54 | -8.615850e-47 |
| Msa0268390 | Msa1368280 | 0.851644 | 7.757543e-61 | -8.615850e-47 |
| Msa0268400 | Msa1368280 | 0.831598 | 1.524447e-55 | -8.615850e-47 |
| Msa0268410 | Msa1368280 | 0.840654 | 7.635665e-58 | -8.615850e-47 |
| Msa0268430 | Msa1368280 | 0.825306 | 5.037412e-54 | -8.615850e-47 |
| Msa0268530 | Msa1368280 | 0.825945 | 3.554747e-54 | -8.615850e-47 |
| Msa0268550 | Msa1368280 | 0.839646 | 1.399201e-57 | -8.615850e-47 |
| Msa0268560 | Msa1368280 | 0.813950 | 1.974089e-51 | -8.615850e-47 |
| Msa0268570 | Msa1368280 | 0.806062 | 9.873121e-50 | -8.615850e-47 |
| Msa0268580 | Msa1368280 | 0.844201 | 8.753804e-59 | -8.615850e-47 |
| Msa0268630 | Msa1368280 | 0.835848 | 1.321036e-56 | -8.615850e-47 |
| Msa0268640 | Msa1368280 | 0.840355 | 9.143443e-58 | -8.615850e-47 |
| Msa0268720 | Msa1368280 | 0.850881 | 1.274818e-60 | -8.615850e-47 |
| Msa0268740 | Msa1368280 | 0.839235 | 1.788883e-57 | -8.615850e-47 |
| Msa0268750 | Msa1368280 | 0.804243 | 2.371570e-49 | -8.615850e-47 |
| Msa0268760 | Msa1368280 | 0.818924 | 1.520542e-52 | -8.615850e-47 |
| Msa0268830 | Msa1368280 | 0.826059 | 3.338181e-54 | -8.615850e-47 |
| Msa0268840 | Msa1368280 | 0.835878 | 1.298639e-56 | -8.615850e-47 |
| Msa0268860 | Msa1368280 | 0.820045 | 8.441272e-53 | -8.615850e-47 |
| Msa0268920 | Msa1368280 | 0.829449 | 5.116721e-55 | -8.615850e-47 |
| Msa0268940 | Msa1368280 | 0.844246 | 8.513962e-59 | -8.615850e-47 |
| Msa0268950 | Msa1368280 | 0.832342 | 9.987142e-56 | -8.615850e-47 |
| Msa0268960 | Msa1368280 | 0.832382 | 9.757530e-56 | -8.615850e-47 |
| Msa0269040 | Msa1368280 | 0.827348 | 1.643800e-54 | -8.615850e-47 |
| Msa0269050 | Msa1368280 | 0.845239 | 4.596336e-59 | -8.615850e-47 |
| Msa0269070 | Msa1368280 | 0.824086 | 9.763830e-54 | -8.615850e-47 |
| Msa0284980 | Msa1368280 | 0.804185 | 2.438305e-49 | -8.615850e-47 |
| Msa0307490 | Msa1368280 | 0.829802 | 4.198915e-55 | -8.615850e-47 |
| Msa0344180 | Msa1368280 | 0.841882 | 3.629244e-58 | -8.615850e-47 |
| Msa0344190 | Msa1368280 | 0.838932 | 2.143202e-57 | -8.615850e-47 |
| Msa0344210 | Msa1368280 | 0.812400 | 4.320498e-51 | -8.615850e-47 |
| Msa0344280 | Msa1368280 | 0.817551 | 3.109823e-52 | -8.615850e-47 |
| Msa0344300 | Msa1368280 | 0.848589 | 5.568067e-60 | -8.615850e-47 |
| Msa0344310 | Msa1368280 | 0.836204 | 1.073007e-56 | -8.615850e-47 |
| Msa0344330 | Msa1368280 | 0.811743 | 6.011055e-51 | -8.615850e-47 |
| Msa1143120 | Msa1368280 | 0.833705 | 4.572916e-56 | -8.615850e-47 |
| Msa1143130 | Msa1368280 | 0.832907 | 7.230222e-56 | -8.615850e-47 |
| Msa1143160 | Msa1368280 | 0.839406 | 1.615218e-57 | -8.615850e-47 |
| Msa1143170 | Msa1368280 | 0.801643 | 8.173526e-49 | -8.615850e-47 |
| Msa1143180 | Msa1368280 | 0.822420 | 2.391386e-53 | -8.615850e-47 |
| Msa1197210 | Msa1368280 | 0.830704 | 2.528475e-55 | -8.615850e-47 |
| Msa1199690 | Msa1368280 | 0.811871 | 5.637663e-51 | -8.615850e-47 |
| Msa0483990 | Msa1368280 | 0.800189 | 1.619590e-48 | -8.615850e-47 |
| Msa0484040 | Msa1368280 | 0.803745 | 3.010267e-49 | -8.615850e-47 |
| Msa0495270 | Msa1368280 | 0.827241 | 1.744266e-54 | -8.615850e-47 |
| Msa0571220 | Msa1368280 | 0.813500 | 2.480933e-51 | -8.615850e-47 |
| Msa0574230 | Msa1368280 | 0.807749 | 4.342544e-50 | -8.615850e-47 |
| Msa0576510 | Msa1368280 | 0.806535 | 7.846876e-50 | -8.615850e-47 |
| Msa0577140 | Msa1368280 | 0.831200 | 1.910377e-55 | -8.615850e-47 |
| Msa0577910 | Msa1368280 | 0.814182 | 1.754814e-51 | -8.615850e-47 |
| Msa0582510 | Msa1368280 | 0.836931 | 7.008021e-57 | -8.615850e-47 |
| Msa0582520 | Msa1368280 | 0.846491 | 2.100783e-59 | -8.615850e-47 |
| Msa0582540 | Msa1368280 | 0.812890 | 3.376153e-51 | -8.615850e-47 |
| Msa0582610 | Msa1368280 | 0.826487 | 2.641274e-54 | -8.615850e-47 |
| Msa0582630 | Msa1368280 | 0.845992 | 2.873478e-59 | -8.615850e-47 |
| Msa0582640 | Msa1368280 | 0.813839 | 2.088973e-51 | -8.615850e-47 |
| Msa0582650 | Msa1368280 | 0.807414 | 5.115331e-50 | -8.615850e-47 |
| Msa0582660 | Msa1368280 | 0.842958 | 1.881514e-58 | -8.615850e-47 |
| Msa0582690 | Msa1368280 | 0.830738 | 2.480443e-55 | -8.615850e-47 |
| Msa0582700 | Msa1368280 | 0.840958 | 6.355259e-58 | -8.615850e-47 |
| Msa0582720 | Msa1368280 | 0.843521 | 1.331379e-58 | -8.615850e-47 |
| Msa0582750 | Msa1368280 | 0.843117 | 1.706310e-58 | -8.615850e-47 |
| Msa0582760 | Msa1368280 | 0.833337 | 5.652438e-56 | -8.615850e-47 |
| Msa0582770 | Msa1368280 | 0.806330 | 8.668500e-50 | -8.615850e-47 |
| Msa0582780 | Msa1368280 | 0.847446 | 1.150239e-59 | -8.615850e-47 |
| Msa0582810 | Msa1368280 | 0.826781 | 2.247020e-54 | -8.615850e-47 |
| Msa0582820 | Msa1368280 | 0.848390 | 6.321401e-60 | -8.615850e-47 |
| Msa0582840 | Msa1368280 | 0.831439 | 1.668645e-55 | -8.615850e-47 |
| Msa0582890 | Msa1368280 | 0.836276 | 1.029068e-56 | -8.615850e-47 |
| Msa0582910 | Msa1368280 | 0.832558 | 8.827085e-56 | -8.615850e-47 |
| Msa0582920 | Msa1368280 | 0.811302 | 7.492807e-51 | -8.615850e-47 |
| Msa0582930 | Msa1368280 | 0.853412 | 2.431022e-61 | -8.615850e-47 |
| Msa0591370 | Msa1368280 | 0.812374 | 4.377657e-51 | -8.615850e-47 |
| Msa0591380 | Msa1368280 | 0.816741 | 4.728766e-52 | -8.615850e-47 |
| Msa0867640 | Msa1368280 | 0.838429 | 2.890670e-57 | -8.615850e-47 |
| Msa0867650 | Msa1368280 | 0.814072 | 1.856007e-51 | -8.615850e-47 |
| Msa0880200 | Msa1368280 | 0.806691 | 7.274002e-50 | -8.615850e-47 |
| Msa0883880 | Msa1368280 | 0.808592 | 2.871687e-50 | -8.615850e-47 |
| Msa0924850 | Msa1368280 | 0.812675 | 3.762861e-51 | -8.615850e-47 |
| Msa0924870 | Msa1368280 | 0.832548 | 8.875722e-56 | -8.615850e-47 |
| Msa0924880 | Msa1368280 | 0.806536 | 7.843665e-50 | -8.615850e-47 |
| Msa0924890 | Msa1368280 | 0.824292 | 8.736315e-54 | -8.615850e-47 |
| Msa0924990 | Msa1368280 | 0.840632 | 7.736511e-58 | -8.615850e-47 |
| Msa0925040 | Msa1368280 | 0.840106 | 1.061925e-57 | -8.615850e-47 |
| Msa0931070 | Msa1368280 | 0.837685 | 4.491188e-57 | -8.615850e-47 |
| Msa0931080 | Msa1368280 | 0.843879 | 1.068268e-58 | -8.615850e-47 |
| Msa0931100 | Msa1368280 | 0.840102 | 1.064463e-57 | -8.615850e-47 |
| Msa0931110 | Msa1368280 | 0.819318 | 1.237116e-52 | -8.615850e-47 |
| Msa0931130 | Msa1368280 | 0.836376 | 9.703658e-57 | -8.615850e-47 |
| Msa0931140 | Msa1368280 | 0.846861 | 1.664791e-59 | -8.615850e-47 |
| Msa0931160 | Msa1368280 | 0.832361 | 9.878080e-56 | -8.615850e-47 |
| Msa0931190 | Msa1368280 | 0.834731 | 2.529579e-56 | -8.615850e-47 |
| Msa0931210 | Msa1368280 | 0.841613 | 4.274214e-58 | -8.615850e-47 |
| Msa0931220 | Msa1368280 | 0.824334 | 8.537094e-54 | -8.615850e-47 |
| Msa0931240 | Msa1368280 | 0.831285 | 1.820087e-55 | -8.615850e-47 |
| Msa0931260 | Msa1368280 | 0.820888 | 5.405090e-53 | -8.615850e-47 |
| Msa0931270 | Msa1368280 | 0.837294 | 5.658700e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368280 | MtrunA17_Chr7g0229301 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1368280 | MtrunA17_Chr6g0454441 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1368280 | MtrunA17_Chr4g0016451 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1368280 | MtrunA17_Chr6g0466281 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1368280 | MtrunA17_CPg0493311 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1368280 | MtrunA17_Chr7g0229661 | 84.080 | 201 | 13 | 1 | 1 | 201 | 1 | 182 | 1.89e-115 | 327 |
| Msa1368280 | MtrunA17_Chr4g0015291 | 97.436 | 156 | 4 | 0 | 1 | 156 | 1 | 156 | 3.32e-108 | 307 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368280 | ATCG00380.1 | 88.060 | 201 | 24 | 0 | 1 | 201 | 1 | 201 | 2.12e-126 | 355 |
Find 33 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATAATAGATAGTAAA+TGG | 0.189787 | tig0018631:-66235 | Msa1368280:CDS |
| GATTGACTAATCCTTTATAT+TGG | 0.284280 | tig0018631:+66255 | None:intergenic |
| CTTGATCCATTCCAATATAA+AGG | 0.291752 | tig0018631:-66266 | Msa1368280:CDS |
| CTTAAATACGTTCGTATCGC+TGG | 0.342652 | tig0018631:-66566 | Msa1368280:CDS |
| ACAATTACTTGAAATGCGTT+TGG | 0.359489 | tig0018631:-66510 | Msa1368280:CDS |
| TTTGAAAATTAATGAATTGC+TGG | 0.365999 | tig0018631:-66207 | Msa1368280:CDS |
| ATGGATTGGCAATTCTTCGC+GGG | 0.450528 | tig0018631:+66295 | None:intergenic |
| TACCAGGACTAACTAGTAAA+CGG | 0.463029 | tig0018631:-66709 | Msa1368280:CDS |
| TGAGGTTTGCAACGATAACT+TGG | 0.468099 | tig0018631:+66386 | None:intergenic |
| ACTAATCCTTTATATTGGAA+TGG | 0.475526 | tig0018631:+66260 | None:intergenic |
| GTCTGTGGTTAACTAATTGA+CGG | 0.477609 | tig0018631:+66441 | None:intergenic |
| TCAAATAATAGATAGTAAAT+GGG | 0.487910 | tig0018631:-66234 | Msa1368280:CDS |
| ATAATAGATAGTAAATGGGT+TGG | 0.504615 | tig0018631:-66230 | Msa1368280:CDS |
| CTAAGTTCGCTTCCAACTGT+AGG | 0.508663 | tig0018631:+66686 | None:intergenic |
| GGATCAAGAGTCAAATGGAT+TGG | 0.511159 | tig0018631:+66281 | None:intergenic |
| GGAAAAGCGAAAGGTTCAAC+CGG | 0.516182 | tig0018631:-66545 | Msa1368280:CDS |
| TCTGTGGTTAACTAATTGAC+GGG | 0.521261 | tig0018631:+66442 | None:intergenic |
| GGCCGTTTACTAGTTAGTCC+TGG | 0.527000 | tig0018631:+66707 | None:intergenic |
| AATGGATTGGCAATTCTTCG+CGG | 0.545268 | tig0018631:+66294 | None:intergenic |
| TCAAGATATTATTACAGCGA+AGG | 0.559737 | tig0018631:-66366 | Msa1368280:CDS |
| TTCGCTGTAATAATATCTTG+AGG | 0.560954 | tig0018631:+66368 | None:intergenic |
| TAATTGTAGTAAAACTTGAC+CGG | 0.568250 | tig0018631:+66526 | None:intergenic |
| ACTAGTAAACGGCCTACAGT+TGG | 0.568372 | tig0018631:-66698 | Msa1368280:CDS |
| CAAGATATTATTACAGCGAA+GGG | 0.569002 | tig0018631:-66365 | Msa1368280:CDS |
| TTAACTAATTGACGGGCTTG+AGG | 0.581554 | tig0018631:+66449 | None:intergenic |
| GGAATGGATCAAGAGTCAAA+TGG | 0.582974 | tig0018631:+66276 | None:intergenic |
| GATTGGCAATTCTTCGCGGG+GGG | 0.584547 | tig0018631:+66298 | None:intergenic |
| TGGATTGGCAATTCTTCGCG+GGG | 0.610754 | tig0018631:+66296 | None:intergenic |
| TGTTTATGTCACGTTACAGA+GGG | 0.632465 | tig0018631:-66766 | None:intergenic |
| GTGTTTATGTCACGTTACAG+AGG | 0.633128 | tig0018631:-66767 | None:intergenic |
| CGTATCGCTGGAAAAGCGAA+AGG | 0.633501 | tig0018631:-66554 | Msa1368280:CDS |
| CATTAACTAAAACATGTCTG+TGG | 0.663264 | tig0018631:+66426 | None:intergenic |
| GGATTGGCAATTCTTCGCGG+GGG | 0.681198 | tig0018631:+66297 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAATAATAGATAGTAAA+TGG | - | tig0018631:66704-66723 | Msa1368280:CDS | 15.0% |
| !! | TCAAATAATAGATAGTAAAT+GGG | - | tig0018631:66705-66724 | Msa1368280:CDS | 15.0% |
| !! | TTTGAAAATTAATGAATTGC+TGG | - | tig0018631:66732-66751 | Msa1368280:CDS | 20.0% |
| !! | CAAAAATTGCGTTTTCATTA+TGG | - | tig0018631:66331-66350 | Msa1368280:CDS | 25.0% |
| ! | TAATTGTAGTAAAACTTGAC+CGG | + | tig0018631:66416-66435 | None:intergenic | 25.0% |
| !!! | GATAACATACTTTTTCGATT+GGG | - | tig0018631:66451-66470 | Msa1368280:CDS | 25.0% |
| ! | ACTAATCCTTTATATTGGAA+TGG | + | tig0018631:66682-66701 | None:intergenic | 25.0% |
| ! | GATTGACTAATCCTTTATAT+TGG | + | tig0018631:66687-66706 | None:intergenic | 25.0% |
| ! | ATAATAGATAGTAAATGGGT+TGG | - | tig0018631:66709-66728 | Msa1368280:CDS | 25.0% |
| TTTCAAAAAAATACGTCGTC+TGG | - | tig0018631:66201-66220 | Msa1368280:CDS | 30.0% | |
| TTCAAAAAAATACGTCGTCT+GGG | - | tig0018631:66202-66221 | Msa1368280:CDS | 30.0% | |
| ACAATTACTTGAAATGCGTT+TGG | - | tig0018631:66429-66448 | Msa1368280:CDS | 30.0% | |
| !!! | GGATAACATACTTTTTCGAT+TGG | - | tig0018631:66450-66469 | Msa1368280:CDS | 30.0% |
| CATTAACTAAAACATGTCTG+TGG | + | tig0018631:66516-66535 | None:intergenic | 30.0% | |
| !!! | CACAGACATGTTTTAGTTAA+TGG | - | tig0018631:66514-66533 | Msa1368280:CDS | 30.0% |
| TTCGCTGTAATAATATCTTG+AGG | + | tig0018631:66574-66593 | None:intergenic | 30.0% | |
| TCAAGATATTATTACAGCGA+AGG | - | tig0018631:66573-66592 | Msa1368280:CDS | 30.0% | |
| CAAGATATTATTACAGCGAA+GGG | - | tig0018631:66574-66593 | Msa1368280:CDS | 30.0% | |
| CTTGATCCATTCCAATATAA+AGG | - | tig0018631:66673-66692 | Msa1368280:CDS | 30.0% | |
| !!! | CGACGTATTTTTTTGAAACG+AGG | + | tig0018631:66199-66218 | None:intergenic | 35.0% |
| TCAAAAAAATACGTCGTCTG+GGG | - | tig0018631:66203-66222 | Msa1368280:CDS | 35.0% | |
| TACCAGGACTAACTAGTAAA+CGG | - | tig0018631:66230-66249 | Msa1368280:CDS | 35.0% | |
| !!! | CATACTTTTTCGATTGGGTA+TGG | - | tig0018631:66456-66475 | Msa1368280:CDS | 35.0% |
| TCTGTGGTTAACTAATTGAC+GGG | + | tig0018631:66500-66519 | None:intergenic | 35.0% | |
| GTCTGTGGTTAACTAATTGA+CGG | + | tig0018631:66501-66520 | None:intergenic | 35.0% | |
| CAAAAAAATACGTCGTCTGG+GGG | - | tig0018631:66204-66223 | Msa1368280:CDS | 40.0% | |
| !!! | ATTTTTTACTCGAGCGCGAT+TGG | + | tig0018631:66282-66301 | None:intergenic | 40.0% |
| CTTAAATACGTTCGTATCGC+TGG | - | tig0018631:66373-66392 | Msa1368280:CDS | 40.0% | |
| !! | TTAACTAATTGACGGGCTTG+AGG | + | tig0018631:66493-66512 | None:intergenic | 40.0% |
| TGAGGTTTGCAACGATAACT+TGG | + | tig0018631:66556-66575 | None:intergenic | 40.0% | |
| !! | AATGGATTGGCAATTCTTCG+CGG | + | tig0018631:66648-66667 | None:intergenic | 40.0% |
| GGATCAAGAGTCAAATGGAT+TGG | + | tig0018631:66661-66680 | None:intergenic | 40.0% | |
| GGAATGGATCAAGAGTCAAA+TGG | + | tig0018631:66666-66685 | None:intergenic | 40.0% | |
| ACTAGTAAACGGCCTACAGT+TGG | - | tig0018631:66241-66260 | Msa1368280:CDS | 45.0% | |
| CTAAGTTCGCTTCCAACTGT+AGG | + | tig0018631:66256-66275 | None:intergenic | 45.0% | |
| GGAAAAGCGAAAGGTTCAAC+CGG | - | tig0018631:66394-66413 | Msa1368280:CDS | 45.0% | |
| !! | ATGGATTGGCAATTCTTCGC+GGG | + | tig0018631:66647-66666 | None:intergenic | 45.0% |
| GGCCGTTTACTAGTTAGTCC+TGG | + | tig0018631:66235-66254 | None:intergenic | 50.0% | |
| CGTATCGCTGGAAAAGCGAA+AGG | - | tig0018631:66385-66404 | Msa1368280:CDS | 50.0% | |
| !! | TGGATTGGCAATTCTTCGCG+GGG | + | tig0018631:66646-66665 | None:intergenic | 50.0% |
| GATTGGCAATTCTTCGCGGG+GGG | + | tig0018631:66644-66663 | None:intergenic | 55.0% | |
| ! | GGATTGGCAATTCTTCGCGG+GGG | + | tig0018631:66645-66664 | None:intergenic | 55.0% |
| CGTCGTCTGGGGGCTTTACC+AGG | - | tig0018631:66214-66233 | Msa1368280:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018631 | gene | 66178 | 66783 | 66178 | ID=Msa1368280;Name=Msa1368280 |
| tig0018631 | mRNA | 66178 | 66783 | 66178 | ID=Msa1368280-mRNA-1;Parent=Msa1368280;Name=Msa1368280-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|201 |
| tig0018631 | exon | 66178 | 66783 | 66178 | ID=Msa1368280-mRNA-1:exon:384;Parent=Msa1368280-mRNA-1 |
| tig0018631 | CDS | 66178 | 66783 | 66178 | ID=Msa1368280-mRNA-1:cds;Parent=Msa1368280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
