Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380640 | YP_009141600.1 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 3.55e-143 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380640 | sp|Q9BBT5|RR4_LOTJA | 95.522 | 201 | 9 | 0 | 1 | 201 | 1 | 201 | 8.95e-140 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380640 | A0A0F6NLD0 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 1.70e-143 | 407 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030710 | Msa1380640 | 0.815912 | 7.249867e-52 | -8.615850e-47 |
| Msa0095150 | Msa1380640 | 0.810305 | 1.231172e-50 | -8.615850e-47 |
| Msa0095170 | Msa1380640 | 0.841258 | 5.299003e-58 | -8.615850e-47 |
| Msa0095190 | Msa1380640 | 0.824487 | 7.858033e-54 | -8.615850e-47 |
| Msa0095210 | Msa1380640 | 0.835407 | 1.708078e-56 | -8.615850e-47 |
| Msa0095290 | Msa1380640 | 0.824289 | 8.750238e-54 | -8.615850e-47 |
| Msa1354320 | Msa1380640 | 0.821333 | 4.269228e-53 | -8.615850e-47 |
| Msa1354330 | Msa1380640 | 0.825332 | 4.967479e-54 | -8.615850e-47 |
| Msa1354340 | Msa1380640 | 0.808238 | 3.415796e-50 | -8.615850e-47 |
| Msa1354350 | Msa1380640 | 0.897560 | 1.249537e-76 | -8.615850e-47 |
| Msa1354380 | Msa1380640 | 0.901710 | 2.034232e-78 | -8.615850e-47 |
| Msa1354390 | Msa1380640 | 0.910570 | 1.616492e-82 | -8.615850e-47 |
| Msa1354880 | Msa1380640 | 0.830248 | 3.268096e-55 | -8.615850e-47 |
| Msa1354900 | Msa1380640 | 0.848830 | 4.772309e-60 | -8.615850e-47 |
| Msa1354910 | Msa1380640 | 0.816134 | 6.468078e-52 | -8.615850e-47 |
| Msa1354920 | Msa1380640 | 0.802855 | 4.601894e-49 | -8.615850e-47 |
| Msa1354930 | Msa1380640 | 0.837850 | 4.074276e-57 | -8.615850e-47 |
| Msa1354950 | Msa1380640 | 0.863244 | 2.858711e-64 | -8.615850e-47 |
| Msa1355050 | Msa1380640 | 0.830440 | 2.932691e-55 | -8.615850e-47 |
| Msa1355070 | Msa1380640 | 0.846995 | 1.529817e-59 | -8.615850e-47 |
| Msa1355080 | Msa1380640 | 0.818327 | 2.077249e-52 | -8.615850e-47 |
| Msa1355090 | Msa1380640 | 0.801366 | 9.314061e-49 | -8.615850e-47 |
| Msa1355100 | Msa1380640 | 0.834415 | 3.036994e-56 | -8.615850e-47 |
| Msa1366000 | Msa1380640 | 0.874621 | 5.853397e-68 | -8.615850e-47 |
| Msa1366010 | Msa1380640 | 0.890140 | 1.289752e-73 | -8.615850e-47 |
| Msa1366040 | Msa1380640 | 0.848025 | 7.969705e-60 | -8.615850e-47 |
| Msa1366050 | Msa1380640 | 0.903660 | 2.755852e-79 | -8.615850e-47 |
| Msa1368270 | Msa1380640 | 0.884113 | 2.530171e-71 | -8.615850e-47 |
| Msa1368280 | Msa1380640 | 0.883460 | 4.403574e-71 | -8.615850e-47 |
| Msa1368290 | Msa1380640 | 0.884058 | 2.650993e-71 | -8.615850e-47 |
| Msa1368300 | Msa1380640 | 0.878807 | 2.082737e-69 | -8.615850e-47 |
| Msa1368310 | Msa1380640 | 0.817732 | 2.830239e-52 | -8.615850e-47 |
| Msa1380570 | Msa1380640 | 0.819852 | 9.340482e-53 | -8.615850e-47 |
| Msa1380590 | Msa1380640 | 0.837204 | 5.966563e-57 | -8.615850e-47 |
| Msa1380600 | Msa1380640 | 0.837923 | 3.903422e-57 | -8.615850e-47 |
| Msa1380610 | Msa1380640 | 0.819572 | 1.082246e-52 | -8.615850e-47 |
| Msa1380620 | Msa1380640 | 0.817425 | 3.319696e-52 | -8.615850e-47 |
| Msa1380640 | Msa1380650 | 0.836208 | 1.070874e-56 | -8.615850e-47 |
| Msa1380640 | Msa1380710 | 0.904504 | 1.145897e-79 | -8.615850e-47 |
| Msa1380640 | Msa1385370 | 0.810646 | 1.039466e-50 | -8.615850e-47 |
| Msa1380640 | Msa1385380 | 0.830456 | 2.906826e-55 | -8.615850e-47 |
| Msa1380640 | Msa1394030 | 0.811512 | 6.745654e-51 | -8.615850e-47 |
| Msa1380640 | Msa1394040 | 0.825761 | 3.930582e-54 | -8.615850e-47 |
| Msa1380640 | Msa1394060 | 0.845684 | 3.483115e-59 | -8.615850e-47 |
| Msa1380640 | Msa1394130 | 0.825166 | 5.436907e-54 | -8.615850e-47 |
| Msa1380640 | Msa1394150 | 0.828348 | 9.452267e-55 | -8.615850e-47 |
| Msa1380640 | Msa1394160 | 0.814127 | 1.805086e-51 | -8.615850e-47 |
| Msa1380640 | Msa1394170 | 0.816929 | 4.292443e-52 | -8.615850e-47 |
| Msa1380640 | Msa1394210 | 0.818271 | 2.138979e-52 | -8.615850e-47 |
| Msa1380640 | Msa1394220 | 0.835485 | 1.632939e-56 | -8.615850e-47 |
| Msa1380640 | Msa1394230 | 0.835491 | 1.627241e-56 | -8.615850e-47 |
| Msa1380640 | Msa1394250 | 0.837319 | 5.576145e-57 | -8.615850e-47 |
| Msa1380640 | Msa1398700 | 0.860430 | 2.077553e-63 | -8.615850e-47 |
| Msa1380640 | Msa1398710 | 0.827172 | 1.811585e-54 | -8.615850e-47 |
| Msa1380640 | Msa1398720 | 0.884838 | 1.362273e-71 | -8.615850e-47 |
| Msa1380640 | Msa1400330 | 0.822875 | 1.874876e-53 | -8.615850e-47 |
| Msa0704750 | Msa1380640 | 0.814353 | 1.608604e-51 | -8.615850e-47 |
| Msa0173880 | Msa1380640 | 0.846830 | 1.696996e-59 | -8.615850e-47 |
| Msa0202640 | Msa1380640 | 0.823239 | 1.541322e-53 | -8.615850e-47 |
| Msa0221840 | Msa1380640 | 0.815707 | 8.055023e-52 | -8.615850e-47 |
| Msa1269400 | Msa1380640 | 0.874869 | 4.818171e-68 | -8.615850e-47 |
| Msa1269410 | Msa1380640 | 0.831604 | 1.519510e-55 | -8.615850e-47 |
| Msa1269420 | Msa1380640 | 0.888091 | 8.028960e-73 | -8.615850e-47 |
| Msa1305090 | Msa1380640 | 0.811932 | 5.466538e-51 | -8.615850e-47 |
| Msa0370210 | Msa1380640 | 0.828800 | 7.348337e-55 | -8.615850e-47 |
| Msa0398630 | Msa1380640 | 0.822645 | 2.120886e-53 | -8.615850e-47 |
| Msa0449920 | Msa1380640 | 0.807754 | 4.331759e-50 | -8.615850e-47 |
| Msa0983700 | Msa1380640 | 0.837569 | 4.810786e-57 | -8.615850e-47 |
| Msa0983720 | Msa1380640 | 0.839079 | 1.963729e-57 | -8.615850e-47 |
| Msa1084630 | Msa1380640 | 0.821868 | 3.211821e-53 | -8.615850e-47 |
| Msa1086050 | Msa1380640 | 0.837657 | 4.567194e-57 | -8.615850e-47 |
| Msa1086070 | Msa1380640 | 0.833209 | 6.083289e-56 | -8.615850e-47 |
| Msa1086080 | Msa1380640 | 0.810335 | 1.213037e-50 | -8.615850e-47 |
| Msa1086100 | Msa1380640 | 0.836281 | 1.026153e-56 | -8.615850e-47 |
| Msa1086140 | Msa1380640 | 0.840197 | 1.005326e-57 | -8.615850e-47 |
| Msa1086150 | Msa1380640 | 0.832534 | 8.950820e-56 | -8.615850e-47 |
| Msa1086180 | Msa1380640 | 0.827336 | 1.655138e-54 | -8.615850e-47 |
| Msa1086190 | Msa1380640 | 0.815328 | 9.778609e-52 | -8.615850e-47 |
| Msa1086200 | Msa1380640 | 0.801101 | 1.055493e-48 | -8.615850e-47 |
| Msa1086210 | Msa1380640 | 0.827899 | 1.212603e-54 | -8.615850e-47 |
| Msa1086250 | Msa1380640 | 0.809435 | 1.894898e-50 | -8.615850e-47 |
| Msa1086260 | Msa1380640 | 0.830601 | 2.678994e-55 | -8.615850e-47 |
| Msa1086270 | Msa1380640 | 0.814477 | 1.510651e-51 | -8.615850e-47 |
| Msa1086280 | Msa1380640 | 0.837465 | 5.117116e-57 | -8.615850e-47 |
| Msa1086300 | Msa1380640 | 0.823594 | 1.273797e-53 | -8.615850e-47 |
| Msa1086360 | Msa1380640 | 0.831142 | 1.973557e-55 | -8.615850e-47 |
| Msa1086380 | Msa1380640 | 0.831214 | 1.895386e-55 | -8.615850e-47 |
| Msa1086430 | Msa1380640 | 0.835083 | 2.062418e-56 | -8.615850e-47 |
| Msa1086450 | Msa1380640 | 0.845426 | 4.092350e-59 | -8.615850e-47 |
| Msa1086470 | Msa1380640 | 0.832605 | 8.592250e-56 | -8.615850e-47 |
| Msa1086660 | Msa1380640 | 0.828204 | 1.023660e-54 | -8.615850e-47 |
| Msa1086860 | Msa1380640 | 0.836337 | 9.930346e-57 | -8.615850e-47 |
| Msa1086880 | Msa1380640 | 0.834294 | 3.256909e-56 | -8.615850e-47 |
| Msa1086890 | Msa1380640 | 0.819836 | 9.423819e-53 | -8.615850e-47 |
| Msa1086900 | Msa1380640 | 0.806441 | 8.213699e-50 | -8.615850e-47 |
| Msa1086910 | Msa1380640 | 0.835424 | 1.692047e-56 | -8.615850e-47 |
| Msa0268170 | Msa1380640 | 0.841047 | 6.022513e-58 | -8.615850e-47 |
| Msa0268190 | Msa1380640 | 0.836958 | 6.897748e-57 | -8.615850e-47 |
| Msa0268370 | Msa1380640 | 0.830015 | 3.726186e-55 | -8.615850e-47 |
| Msa0268390 | Msa1380640 | 0.834352 | 3.150780e-56 | -8.615850e-47 |
| Msa0268400 | Msa1380640 | 0.829034 | 6.450105e-55 | -8.615850e-47 |
| Msa0268410 | Msa1380640 | 0.839115 | 1.922006e-57 | -8.615850e-47 |
| Msa0268430 | Msa1380640 | 0.835273 | 1.847021e-56 | -8.615850e-47 |
| Msa0268530 | Msa1380640 | 0.826992 | 2.001168e-54 | -8.615850e-47 |
| Msa0268550 | Msa1380640 | 0.838655 | 2.527804e-57 | -8.615850e-47 |
| Msa0268560 | Msa1380640 | 0.818796 | 1.625958e-52 | -8.615850e-47 |
| Msa0268570 | Msa1380640 | 0.809773 | 1.602912e-50 | -8.615850e-47 |
| Msa0268580 | Msa1380640 | 0.835765 | 1.387293e-56 | -8.615850e-47 |
| Msa0268630 | Msa1380640 | 0.825785 | 3.878591e-54 | -8.615850e-47 |
| Msa0268640 | Msa1380640 | 0.825319 | 5.000382e-54 | -8.615850e-47 |
| Msa0268720 | Msa1380640 | 0.853731 | 1.968586e-61 | -8.615850e-47 |
| Msa0268740 | Msa1380640 | 0.825691 | 4.083568e-54 | -8.615850e-47 |
| Msa0268750 | Msa1380640 | 0.809512 | 1.824216e-50 | -8.615850e-47 |
| Msa0268760 | Msa1380640 | 0.823904 | 1.077621e-53 | -8.615850e-47 |
| Msa0268830 | Msa1380640 | 0.825221 | 5.274880e-54 | -8.615850e-47 |
| Msa0268840 | Msa1380640 | 0.828112 | 1.077150e-54 | -8.615850e-47 |
| Msa0268860 | Msa1380640 | 0.827385 | 1.610846e-54 | -8.615850e-47 |
| Msa0268920 | Msa1380640 | 0.830493 | 2.847750e-55 | -8.615850e-47 |
| Msa0268940 | Msa1380640 | 0.832215 | 1.073361e-55 | -8.615850e-47 |
| Msa0268950 | Msa1380640 | 0.811721 | 6.077738e-51 | -8.615850e-47 |
| Msa0268960 | Msa1380640 | 0.814440 | 1.539039e-51 | -8.615850e-47 |
| Msa0269040 | Msa1380640 | 0.823671 | 1.221652e-53 | -8.615850e-47 |
| Msa0269050 | Msa1380640 | 0.838126 | 3.460936e-57 | -8.615850e-47 |
| Msa0269070 | Msa1380640 | 0.826998 | 1.994134e-54 | -8.615850e-47 |
| Msa0307490 | Msa1380640 | 0.820342 | 7.214427e-53 | -8.615850e-47 |
| Msa0344180 | Msa1380640 | 0.836009 | 1.202655e-56 | -8.615850e-47 |
| Msa0344190 | Msa1380640 | 0.842971 | 1.866559e-58 | -8.615850e-47 |
| Msa0344210 | Msa1380640 | 0.811257 | 7.662030e-51 | -8.615850e-47 |
| Msa0344280 | Msa1380640 | 0.836272 | 1.031427e-56 | -8.615850e-47 |
| Msa0344300 | Msa1380640 | 0.833110 | 6.436102e-56 | -8.615850e-47 |
| Msa0344310 | Msa1380640 | 0.829435 | 5.155986e-55 | -8.615850e-47 |
| Msa0344330 | Msa1380640 | 0.841144 | 5.678967e-58 | -8.615850e-47 |
| Msa1143120 | Msa1380640 | 0.826681 | 2.373299e-54 | -8.615850e-47 |
| Msa1143130 | Msa1380640 | 0.825298 | 5.060348e-54 | -8.615850e-47 |
| Msa1143160 | Msa1380640 | 0.829542 | 4.855613e-55 | -8.615850e-47 |
| Msa1143180 | Msa1380640 | 0.821601 | 3.702059e-53 | -8.615850e-47 |
| Msa1197210 | Msa1380640 | 0.803750 | 3.003276e-49 | -8.615850e-47 |
| Msa0483990 | Msa1380640 | 0.836099 | 1.141467e-56 | -8.615850e-47 |
| Msa0495270 | Msa1380640 | 0.822281 | 2.576396e-53 | -8.615850e-47 |
| Msa0577140 | Msa1380640 | 0.821831 | 3.275521e-53 | -8.615850e-47 |
| Msa0582510 | Msa1380640 | 0.829012 | 6.528902e-55 | -8.615850e-47 |
| Msa0582520 | Msa1380640 | 0.834510 | 2.874404e-56 | -8.615850e-47 |
| Msa0582540 | Msa1380640 | 0.825012 | 5.911186e-54 | -8.615850e-47 |
| Msa0582610 | Msa1380640 | 0.828926 | 6.851589e-55 | -8.615850e-47 |
| Msa0582630 | Msa1380640 | 0.821385 | 4.153817e-53 | -8.615850e-47 |
| Msa0582640 | Msa1380640 | 0.813784 | 2.147746e-51 | -8.615850e-47 |
| Msa0582650 | Msa1380640 | 0.800345 | 1.505607e-48 | -8.615850e-47 |
| Msa0582660 | Msa1380640 | 0.828374 | 9.315193e-55 | -8.615850e-47 |
| Msa0582690 | Msa1380640 | 0.831188 | 1.923104e-55 | -8.615850e-47 |
| Msa0582700 | Msa1380640 | 0.847170 | 1.370151e-59 | -8.615850e-47 |
| Msa0582720 | Msa1380640 | 0.839285 | 1.735815e-57 | -8.615850e-47 |
| Msa0582750 | Msa1380640 | 0.833498 | 5.153439e-56 | -8.615850e-47 |
| Msa0582760 | Msa1380640 | 0.815969 | 7.037974e-52 | -8.615850e-47 |
| Msa0582780 | Msa1380640 | 0.831862 | 1.312435e-55 | -8.615850e-47 |
| Msa0582810 | Msa1380640 | 0.821268 | 4.419543e-53 | -8.615850e-47 |
| Msa0582820 | Msa1380640 | 0.832288 | 1.029904e-55 | -8.615850e-47 |
| Msa0582840 | Msa1380640 | 0.824350 | 8.466781e-54 | -8.615850e-47 |
| Msa0582890 | Msa1380640 | 0.842230 | 2.935300e-58 | -8.615850e-47 |
| Msa0582910 | Msa1380640 | 0.824816 | 6.575531e-54 | -8.615850e-47 |
| Msa0582920 | Msa1380640 | 0.808191 | 3.496757e-50 | -8.615850e-47 |
| Msa0582930 | Msa1380640 | 0.821116 | 4.789261e-53 | -8.615850e-47 |
| Msa0591370 | Msa1380640 | 0.820396 | 7.014193e-53 | -8.615850e-47 |
| Msa0867640 | Msa1380640 | 0.880478 | 5.312877e-70 | -8.615850e-47 |
| Msa0867650 | Msa1380640 | 0.840387 | 8.966278e-58 | -8.615850e-47 |
| Msa0924850 | Msa1380640 | 0.821147 | 4.711889e-53 | -8.615850e-47 |
| Msa0924870 | Msa1380640 | 0.828256 | 9.945552e-55 | -8.615850e-47 |
| Msa0924880 | Msa1380640 | 0.815102 | 1.097890e-51 | -8.615850e-47 |
| Msa0924890 | Msa1380640 | 0.805080 | 1.586554e-49 | -8.615850e-47 |
| Msa0924990 | Msa1380640 | 0.840869 | 6.704432e-58 | -8.615850e-47 |
| Msa0925040 | Msa1380640 | 0.836705 | 8.001699e-57 | -8.615850e-47 |
| Msa0931070 | Msa1380640 | 0.833491 | 5.174370e-56 | -8.615850e-47 |
| Msa0931080 | Msa1380640 | 0.837604 | 4.713498e-57 | -8.615850e-47 |
| Msa0931100 | Msa1380640 | 0.842638 | 2.288302e-58 | -8.615850e-47 |
| Msa0931110 | Msa1380640 | 0.811471 | 6.888014e-51 | -8.615850e-47 |
| Msa0931130 | Msa1380640 | 0.835301 | 1.817030e-56 | -8.615850e-47 |
| Msa0931140 | Msa1380640 | 0.840916 | 6.518144e-58 | -8.615850e-47 |
| Msa0931160 | Msa1380640 | 0.827848 | 1.246952e-54 | -8.615850e-47 |
| Msa0931190 | Msa1380640 | 0.842977 | 1.859893e-58 | -8.615850e-47 |
| Msa0931210 | Msa1380640 | 0.843044 | 1.784482e-58 | -8.615850e-47 |
| Msa0931220 | Msa1380640 | 0.810476 | 1.130847e-50 | -8.615850e-47 |
| Msa0931230 | Msa1380640 | 0.805962 | 1.036165e-49 | -8.615850e-47 |
| Msa0931240 | Msa1380640 | 0.839539 | 1.491501e-57 | -8.615850e-47 |
| Msa0931260 | Msa1380640 | 0.826708 | 2.338936e-54 | -8.615850e-47 |
| Msa0931270 | Msa1380640 | 0.825514 | 4.497763e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380640 | MtrunA17_Chr7g0229301 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1380640 | MtrunA17_Chr6g0454441 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1380640 | MtrunA17_Chr4g0016451 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1380640 | MtrunA17_Chr6g0466281 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1380640 | MtrunA17_CPg0493311 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1380640 | MtrunA17_Chr7g0229661 | 84.080 | 201 | 13 | 1 | 1 | 201 | 1 | 182 | 1.89e-115 | 327 |
| Msa1380640 | MtrunA17_Chr4g0015291 | 97.436 | 156 | 4 | 0 | 1 | 156 | 1 | 156 | 3.32e-108 | 307 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380640 | ATCG00380.1 | 88.060 | 201 | 24 | 0 | 1 | 201 | 1 | 201 | 2.12e-126 | 355 |
Find 33 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATAATAGATAGTAAA+TGG | 0.189787 | tig0020386:-56526 | Msa1380640:CDS |
| GATTGACTAATCCTTTATAT+TGG | 0.284280 | tig0020386:+56546 | None:intergenic |
| CTTGATCCATTCCAATATAA+AGG | 0.291752 | tig0020386:-56557 | Msa1380640:CDS |
| CTTAAATACGTTCGTATCGC+TGG | 0.342652 | tig0020386:-56857 | Msa1380640:CDS |
| ACAATTACTTGAAATGCGTT+TGG | 0.359489 | tig0020386:-56801 | Msa1380640:CDS |
| TTTGAAAATTAATGAATTGC+TGG | 0.365999 | tig0020386:-56498 | Msa1380640:CDS |
| ATGGATTGGCAATTCTTCGC+GGG | 0.450528 | tig0020386:+56586 | None:intergenic |
| TACCAGGACTAACTAGTAAA+CGG | 0.463029 | tig0020386:-57000 | Msa1380640:CDS |
| TGAGGTTTGCAACGATAACT+TGG | 0.468099 | tig0020386:+56677 | None:intergenic |
| ACTAATCCTTTATATTGGAA+TGG | 0.475526 | tig0020386:+56551 | None:intergenic |
| GTCTGTGGTTAACTAATTGA+CGG | 0.477609 | tig0020386:+56732 | None:intergenic |
| TCAAATAATAGATAGTAAAT+GGG | 0.487910 | tig0020386:-56525 | Msa1380640:CDS |
| ATAATAGATAGTAAATGGGT+TGG | 0.504615 | tig0020386:-56521 | Msa1380640:CDS |
| CTAAGTTCGCTTCCAACTGT+AGG | 0.508663 | tig0020386:+56977 | None:intergenic |
| GGATCAAGAGTCAAATGGAT+TGG | 0.511159 | tig0020386:+56572 | None:intergenic |
| GGAAAAGCGAAAGGTTCAAC+CGG | 0.516182 | tig0020386:-56836 | Msa1380640:CDS |
| TCTGTGGTTAACTAATTGAC+GGG | 0.521261 | tig0020386:+56733 | None:intergenic |
| GGCCGTTTACTAGTTAGTCC+TGG | 0.527000 | tig0020386:+56998 | None:intergenic |
| AATGGATTGGCAATTCTTCG+CGG | 0.545268 | tig0020386:+56585 | None:intergenic |
| TCAAGATATTATTACAGCGA+AGG | 0.559737 | tig0020386:-56657 | Msa1380640:CDS |
| TTCGCTGTAATAATATCTTG+AGG | 0.560954 | tig0020386:+56659 | None:intergenic |
| TAATTGTAGTAAAACTTGAC+CGG | 0.568250 | tig0020386:+56817 | None:intergenic |
| ACTAGTAAACGGCCTACAGT+TGG | 0.568372 | tig0020386:-56989 | Msa1380640:CDS |
| CAAGATATTATTACAGCGAA+GGG | 0.569002 | tig0020386:-56656 | Msa1380640:CDS |
| TTAACTAATTGACGGGCTTG+AGG | 0.581554 | tig0020386:+56740 | None:intergenic |
| GGAATGGATCAAGAGTCAAA+TGG | 0.582974 | tig0020386:+56567 | None:intergenic |
| GATTGGCAATTCTTCGCGGG+GGG | 0.584547 | tig0020386:+56589 | None:intergenic |
| TGGATTGGCAATTCTTCGCG+GGG | 0.610754 | tig0020386:+56587 | None:intergenic |
| TGTTTATGTCACGTTACAGA+GGG | 0.632465 | tig0020386:-57057 | None:intergenic |
| GTGTTTATGTCACGTTACAG+AGG | 0.633128 | tig0020386:-57058 | None:intergenic |
| CGTATCGCTGGAAAAGCGAA+AGG | 0.633501 | tig0020386:-56845 | Msa1380640:CDS |
| CATTAACTAAAACATGTCTG+TGG | 0.663264 | tig0020386:+56717 | None:intergenic |
| GGATTGGCAATTCTTCGCGG+GGG | 0.681198 | tig0020386:+56588 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAATAATAGATAGTAAA+TGG | - | tig0020386:56995-57014 | Msa1380640:CDS | 15.0% |
| !! | TCAAATAATAGATAGTAAAT+GGG | - | tig0020386:56996-57015 | Msa1380640:CDS | 15.0% |
| !! | TTTGAAAATTAATGAATTGC+TGG | - | tig0020386:57023-57042 | Msa1380640:CDS | 20.0% |
| !! | CAAAAATTGCGTTTTCATTA+TGG | - | tig0020386:56622-56641 | Msa1380640:CDS | 25.0% |
| ! | TAATTGTAGTAAAACTTGAC+CGG | + | tig0020386:56707-56726 | None:intergenic | 25.0% |
| !!! | GATAACATACTTTTTCGATT+GGG | - | tig0020386:56742-56761 | Msa1380640:CDS | 25.0% |
| ! | ACTAATCCTTTATATTGGAA+TGG | + | tig0020386:56973-56992 | None:intergenic | 25.0% |
| ! | GATTGACTAATCCTTTATAT+TGG | + | tig0020386:56978-56997 | None:intergenic | 25.0% |
| ! | ATAATAGATAGTAAATGGGT+TGG | - | tig0020386:57000-57019 | Msa1380640:CDS | 25.0% |
| TTTCAAAAAAATACGTCGTC+TGG | - | tig0020386:56492-56511 | Msa1380640:CDS | 30.0% | |
| TTCAAAAAAATACGTCGTCT+GGG | - | tig0020386:56493-56512 | Msa1380640:CDS | 30.0% | |
| ACAATTACTTGAAATGCGTT+TGG | - | tig0020386:56720-56739 | Msa1380640:CDS | 30.0% | |
| !!! | GGATAACATACTTTTTCGAT+TGG | - | tig0020386:56741-56760 | Msa1380640:CDS | 30.0% |
| CATTAACTAAAACATGTCTG+TGG | + | tig0020386:56807-56826 | None:intergenic | 30.0% | |
| !!! | CACAGACATGTTTTAGTTAA+TGG | - | tig0020386:56805-56824 | Msa1380640:CDS | 30.0% |
| TTCGCTGTAATAATATCTTG+AGG | + | tig0020386:56865-56884 | None:intergenic | 30.0% | |
| TCAAGATATTATTACAGCGA+AGG | - | tig0020386:56864-56883 | Msa1380640:CDS | 30.0% | |
| CAAGATATTATTACAGCGAA+GGG | - | tig0020386:56865-56884 | Msa1380640:CDS | 30.0% | |
| CTTGATCCATTCCAATATAA+AGG | - | tig0020386:56964-56983 | Msa1380640:CDS | 30.0% | |
| !!! | CGACGTATTTTTTTGAAACG+AGG | + | tig0020386:56490-56509 | None:intergenic | 35.0% |
| TCAAAAAAATACGTCGTCTG+GGG | - | tig0020386:56494-56513 | Msa1380640:CDS | 35.0% | |
| TACCAGGACTAACTAGTAAA+CGG | - | tig0020386:56521-56540 | Msa1380640:CDS | 35.0% | |
| !!! | CATACTTTTTCGATTGGGTA+TGG | - | tig0020386:56747-56766 | Msa1380640:CDS | 35.0% |
| TCTGTGGTTAACTAATTGAC+GGG | + | tig0020386:56791-56810 | None:intergenic | 35.0% | |
| GTCTGTGGTTAACTAATTGA+CGG | + | tig0020386:56792-56811 | None:intergenic | 35.0% | |
| CAAAAAAATACGTCGTCTGG+GGG | - | tig0020386:56495-56514 | Msa1380640:CDS | 40.0% | |
| !!! | ATTTTTTACTCGAGCGCGAT+TGG | + | tig0020386:56573-56592 | None:intergenic | 40.0% |
| CTTAAATACGTTCGTATCGC+TGG | - | tig0020386:56664-56683 | Msa1380640:CDS | 40.0% | |
| !! | TTAACTAATTGACGGGCTTG+AGG | + | tig0020386:56784-56803 | None:intergenic | 40.0% |
| TGAGGTTTGCAACGATAACT+TGG | + | tig0020386:56847-56866 | None:intergenic | 40.0% | |
| !! | AATGGATTGGCAATTCTTCG+CGG | + | tig0020386:56939-56958 | None:intergenic | 40.0% |
| GGATCAAGAGTCAAATGGAT+TGG | + | tig0020386:56952-56971 | None:intergenic | 40.0% | |
| GGAATGGATCAAGAGTCAAA+TGG | + | tig0020386:56957-56976 | None:intergenic | 40.0% | |
| ACTAGTAAACGGCCTACAGT+TGG | - | tig0020386:56532-56551 | Msa1380640:CDS | 45.0% | |
| CTAAGTTCGCTTCCAACTGT+AGG | + | tig0020386:56547-56566 | None:intergenic | 45.0% | |
| GGAAAAGCGAAAGGTTCAAC+CGG | - | tig0020386:56685-56704 | Msa1380640:CDS | 45.0% | |
| !! | ATGGATTGGCAATTCTTCGC+GGG | + | tig0020386:56938-56957 | None:intergenic | 45.0% |
| GGCCGTTTACTAGTTAGTCC+TGG | + | tig0020386:56526-56545 | None:intergenic | 50.0% | |
| CGTATCGCTGGAAAAGCGAA+AGG | - | tig0020386:56676-56695 | Msa1380640:CDS | 50.0% | |
| !! | TGGATTGGCAATTCTTCGCG+GGG | + | tig0020386:56937-56956 | None:intergenic | 50.0% |
| GATTGGCAATTCTTCGCGGG+GGG | + | tig0020386:56935-56954 | None:intergenic | 55.0% | |
| ! | GGATTGGCAATTCTTCGCGG+GGG | + | tig0020386:56936-56955 | None:intergenic | 55.0% |
| CGTCGTCTGGGGGCTTTACC+AGG | - | tig0020386:56505-56524 | Msa1380640:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020386 | gene | 56469 | 57074 | 56469 | ID=Msa1380640;Name=Msa1380640 |
| tig0020386 | mRNA | 56469 | 57074 | 56469 | ID=Msa1380640-mRNA-1;Parent=Msa1380640;Name=Msa1380640-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|201 |
| tig0020386 | exon | 56469 | 57074 | 56469 | ID=Msa1380640-mRNA-1:exon:7180;Parent=Msa1380640-mRNA-1 |
| tig0020386 | CDS | 56469 | 57074 | 56469 | ID=Msa1380640-mRNA-1:cds;Parent=Msa1380640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
