Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368270 | YP_009141600.1 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 3.55e-143 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368270 | sp|Q9BBT5|RR4_LOTJA | 95.522 | 201 | 9 | 0 | 1 | 201 | 1 | 201 | 8.95e-140 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368270 | A0A0F6NLD0 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 1.70e-143 | 407 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030710 | Msa1368270 | 0.823722 | 1.188536e-53 | -8.615850e-47 |
| Msa0078110 | Msa1368270 | 0.804049 | 2.603565e-49 | -8.615850e-47 |
| Msa0095150 | Msa1368270 | 0.822418 | 2.394647e-53 | -8.615850e-47 |
| Msa0095170 | Msa1368270 | 0.836567 | 8.675065e-57 | -8.615850e-47 |
| Msa0095190 | Msa1368270 | 0.824657 | 7.166149e-54 | -8.615850e-47 |
| Msa0095210 | Msa1368270 | 0.847963 | 8.291111e-60 | -8.615850e-47 |
| Msa0095290 | Msa1368270 | 0.828188 | 1.032835e-54 | -8.615850e-47 |
| Msa1354320 | Msa1368270 | 0.833826 | 4.267690e-56 | -8.615850e-47 |
| Msa1354330 | Msa1368270 | 0.849845 | 2.489549e-60 | -8.615850e-47 |
| Msa1354340 | Msa1368270 | 0.829738 | 4.352452e-55 | -8.615850e-47 |
| Msa1354350 | Msa1368270 | 0.912855 | 1.206009e-83 | -8.615850e-47 |
| Msa1354380 | Msa1368270 | 0.893317 | 7.035837e-75 | -8.615850e-47 |
| Msa1354390 | Msa1368270 | 0.897758 | 1.030895e-76 | -8.615850e-47 |
| Msa1354860 | Msa1368270 | 0.811022 | 8.618529e-51 | -8.615850e-47 |
| Msa1354880 | Msa1368270 | 0.829360 | 5.376397e-55 | -8.615850e-47 |
| Msa1354900 | Msa1368270 | 0.856503 | 3.078321e-62 | -8.615850e-47 |
| Msa1354910 | Msa1368270 | 0.815173 | 1.058519e-51 | -8.615850e-47 |
| Msa1354920 | Msa1368270 | 0.818312 | 2.093685e-52 | -8.615850e-47 |
| Msa1354930 | Msa1368270 | 0.832618 | 8.531818e-56 | -8.615850e-47 |
| Msa1354950 | Msa1368270 | 0.935889 | 4.157607e-97 | -8.615850e-47 |
| Msa1355050 | Msa1368270 | 0.834976 | 2.195165e-56 | -8.615850e-47 |
| Msa1355070 | Msa1368270 | 0.846582 | 1.983518e-59 | -8.615850e-47 |
| Msa1355080 | Msa1368270 | 0.807129 | 5.876038e-50 | -8.615850e-47 |
| Msa1355090 | Msa1368270 | 0.825951 | 3.541287e-54 | -8.615850e-47 |
| Msa1355100 | Msa1368270 | 0.816260 | 6.062131e-52 | -8.615850e-47 |
| Msa1366000 | Msa1368270 | 0.867438 | 1.368768e-65 | -8.615850e-47 |
| Msa1366010 | Msa1368270 | 0.893987 | 3.764162e-75 | -8.615850e-47 |
| Msa1366040 | Msa1368270 | 0.821430 | 4.054144e-53 | -8.615850e-47 |
| Msa1366050 | Msa1368270 | 0.907560 | 4.442655e-81 | -8.615850e-47 |
| Msa1368270 | Msa1368280 | 0.857443 | 1.626773e-62 | -8.615850e-47 |
| Msa1368270 | Msa1368290 | 0.928937 | 1.421485e-92 | -8.615850e-47 |
| Msa1368270 | Msa1368300 | 0.888943 | 3.770246e-73 | -8.615850e-47 |
| Msa1368270 | Msa1368310 | 0.834236 | 3.368082e-56 | -8.615850e-47 |
| Msa1368270 | Msa1380570 | 0.845379 | 4.214347e-59 | -8.615850e-47 |
| Msa1368270 | Msa1380590 | 0.827965 | 1.168584e-54 | -8.615850e-47 |
| Msa1368270 | Msa1380600 | 0.837048 | 6.541764e-57 | -8.615850e-47 |
| Msa1368270 | Msa1380610 | 0.817856 | 2.654806e-52 | -8.615850e-47 |
| Msa1368270 | Msa1380620 | 0.815801 | 7.676138e-52 | -8.615850e-47 |
| Msa1368270 | Msa1380640 | 0.884113 | 2.530171e-71 | -8.615850e-47 |
| Msa1368270 | Msa1380650 | 0.830916 | 2.243344e-55 | -8.615850e-47 |
| Msa1368270 | Msa1380710 | 0.866354 | 3.032066e-65 | -8.615850e-47 |
| Msa1368270 | Msa1385370 | 0.863464 | 2.444156e-64 | -8.615850e-47 |
| Msa1368270 | Msa1385380 | 0.816687 | 4.864462e-52 | -8.615850e-47 |
| Msa1368270 | Msa1389990 | 0.816329 | 5.849780e-52 | -8.615850e-47 |
| Msa1368270 | Msa1394030 | 0.826956 | 2.040234e-54 | -8.615850e-47 |
| Msa1368270 | Msa1394040 | 0.843909 | 1.048294e-58 | -8.615850e-47 |
| Msa1368270 | Msa1394060 | 0.840396 | 8.919144e-58 | -8.615850e-47 |
| Msa1368270 | Msa1394130 | 0.851209 | 1.030267e-60 | -8.615850e-47 |
| Msa1368270 | Msa1394150 | 0.829672 | 4.515341e-55 | -8.615850e-47 |
| Msa1368270 | Msa1394160 | 0.836064 | 1.164607e-56 | -8.615850e-47 |
| Msa1368270 | Msa1394210 | 0.828783 | 7.419423e-55 | -8.615850e-47 |
| Msa1368270 | Msa1394220 | 0.859159 | 5.016846e-63 | -8.615850e-47 |
| Msa1368270 | Msa1394230 | 0.858053 | 1.072646e-62 | -8.615850e-47 |
| Msa1368270 | Msa1394250 | 0.853716 | 1.988632e-61 | -8.615850e-47 |
| Msa1368270 | Msa1398700 | 0.855811 | 4.908776e-62 | -8.615850e-47 |
| Msa1368270 | Msa1398710 | 0.842928 | 1.916756e-58 | -8.615850e-47 |
| Msa1368270 | Msa1398720 | 0.876167 | 1.731752e-68 | -8.615850e-47 |
| Msa1368270 | Msa1400330 | 0.820640 | 6.163289e-53 | -8.615850e-47 |
| Msa0694810 | Msa1368270 | 0.803924 | 2.763178e-49 | -8.615850e-47 |
| Msa0700430 | Msa1368270 | 0.810609 | 1.058865e-50 | -8.615850e-47 |
| Msa0704750 | Msa1368270 | 0.807750 | 4.340629e-50 | -8.615850e-47 |
| Msa0139800 | Msa1368270 | 0.811501 | 6.784423e-51 | -8.615850e-47 |
| Msa0141090 | Msa1368270 | 0.820667 | 6.076065e-53 | -8.615850e-47 |
| Msa0170550 | Msa1368270 | 0.800728 | 1.257707e-48 | -8.615850e-47 |
| Msa0173880 | Msa1368270 | 0.844765 | 6.173851e-59 | -8.615850e-47 |
| Msa0186750 | Msa1368270 | 0.804219 | 2.399974e-49 | -8.615850e-47 |
| Msa0202640 | Msa1368270 | 0.830908 | 2.252959e-55 | -8.615850e-47 |
| Msa0221840 | Msa1368270 | 0.833733 | 4.500234e-56 | -8.615850e-47 |
| Msa0225050 | Msa1368270 | 0.808899 | 2.468968e-50 | -8.615850e-47 |
| Msa1226330 | Msa1368270 | 0.800041 | 1.736084e-48 | -8.615850e-47 |
| Msa1264300 | Msa1368270 | 0.810556 | 1.086806e-50 | -8.615850e-47 |
| Msa1269400 | Msa1368270 | 0.841488 | 4.610275e-58 | -8.615850e-47 |
| Msa1269410 | Msa1368270 | 0.819513 | 1.116706e-52 | -8.615850e-47 |
| Msa1269420 | Msa1368270 | 0.876703 | 1.130413e-68 | -8.615850e-47 |
| Msa1305090 | Msa1368270 | 0.802220 | 6.222054e-49 | -8.615850e-47 |
| Msa0370210 | Msa1368270 | 0.829608 | 4.679362e-55 | -8.615850e-47 |
| Msa0374840 | Msa1368270 | 0.819278 | 1.262805e-52 | -8.615850e-47 |
| Msa0375100 | Msa1368270 | 0.822301 | 2.549022e-53 | -8.615850e-47 |
| Msa0398630 | Msa1368270 | 0.831687 | 1.449636e-55 | -8.615850e-47 |
| Msa0449920 | Msa1368270 | 0.843714 | 1.182613e-58 | -8.615850e-47 |
| Msa0470850 | Msa1368270 | 0.802123 | 6.512729e-49 | -8.615850e-47 |
| Msa0983680 | Msa1368270 | 0.809245 | 2.081849e-50 | -8.615850e-47 |
| Msa0983700 | Msa1368270 | 0.840331 | 9.273280e-58 | -8.615850e-47 |
| Msa0983720 | Msa1368270 | 0.862831 | 3.834664e-64 | -8.615850e-47 |
| Msa1044520 | Msa1368270 | 0.807293 | 5.425614e-50 | -8.615850e-47 |
| Msa1064410 | Msa1368270 | 0.804644 | 1.956341e-49 | -8.615850e-47 |
| Msa1084630 | Msa1368270 | 0.819010 | 1.453479e-52 | -8.615850e-47 |
| Msa1086050 | Msa1368270 | 0.842264 | 2.874882e-58 | -8.615850e-47 |
| Msa1086070 | Msa1368270 | 0.851280 | 9.838913e-61 | -8.615850e-47 |
| Msa1086080 | Msa1368270 | 0.813518 | 2.458206e-51 | -8.615850e-47 |
| Msa1086090 | Msa1368270 | 0.809034 | 2.309353e-50 | -8.615850e-47 |
| Msa1086100 | Msa1368270 | 0.822931 | 1.818733e-53 | -8.615850e-47 |
| Msa1086140 | Msa1368270 | 0.837784 | 4.236040e-57 | -8.615850e-47 |
| Msa1086150 | Msa1368270 | 0.832644 | 8.404248e-56 | -8.615850e-47 |
| Msa1086180 | Msa1368270 | 0.851071 | 1.126516e-60 | -8.615850e-47 |
| Msa1086190 | Msa1368270 | 0.806608 | 7.572708e-50 | -8.615850e-47 |
| Msa1086200 | Msa1368270 | 0.811473 | 6.879341e-51 | -8.615850e-47 |
| Msa1086210 | Msa1368270 | 0.806810 | 6.865338e-50 | -8.615850e-47 |
| Msa1086260 | Msa1368270 | 0.822833 | 1.917413e-53 | -8.615850e-47 |
| Msa1086270 | Msa1368270 | 0.820608 | 6.269840e-53 | -8.615850e-47 |
| Msa1086280 | Msa1368270 | 0.838469 | 2.822682e-57 | -8.615850e-47 |
| Msa1086300 | Msa1368270 | 0.832286 | 1.030606e-55 | -8.615850e-47 |
| Msa1086360 | Msa1368270 | 0.837915 | 3.921489e-57 | -8.615850e-47 |
| Msa1086380 | Msa1368270 | 0.845269 | 4.512919e-59 | -8.615850e-47 |
| Msa1086430 | Msa1368270 | 0.835521 | 1.599222e-56 | -8.615850e-47 |
| Msa1086450 | Msa1368270 | 0.843290 | 1.534631e-58 | -8.615850e-47 |
| Msa1086470 | Msa1368270 | 0.840421 | 8.784411e-58 | -8.615850e-47 |
| Msa1086660 | Msa1368270 | 0.848000 | 8.096271e-60 | -8.615850e-47 |
| Msa1086860 | Msa1368270 | 0.828824 | 7.252060e-55 | -8.615850e-47 |
| Msa1086880 | Msa1368270 | 0.845147 | 4.868324e-59 | -8.615850e-47 |
| Msa1086890 | Msa1368270 | 0.814966 | 1.176800e-51 | -8.615850e-47 |
| Msa1086900 | Msa1368270 | 0.823755 | 1.167821e-53 | -8.615850e-47 |
| Msa1086910 | Msa1368270 | 0.820467 | 6.755157e-53 | -8.615850e-47 |
| Msa1091700 | Msa1368270 | 0.823316 | 1.478826e-53 | -8.615850e-47 |
| Msa0268170 | Msa1368270 | 0.842249 | 2.902097e-58 | -8.615850e-47 |
| Msa0268190 | Msa1368270 | 0.834874 | 2.328036e-56 | -8.615850e-47 |
| Msa0268370 | Msa1368270 | 0.842954 | 1.886254e-58 | -8.615850e-47 |
| Msa0268390 | Msa1368270 | 0.839964 | 1.156449e-57 | -8.615850e-47 |
| Msa0268400 | Msa1368270 | 0.825691 | 4.083508e-54 | -8.615850e-47 |
| Msa0268410 | Msa1368270 | 0.843061 | 1.766600e-58 | -8.615850e-47 |
| Msa0268430 | Msa1368270 | 0.827587 | 1.441114e-54 | -8.615850e-47 |
| Msa0268530 | Msa1368270 | 0.832049 | 1.179736e-55 | -8.615850e-47 |
| Msa0268550 | Msa1368270 | 0.852849 | 3.522780e-61 | -8.615850e-47 |
| Msa0268560 | Msa1368270 | 0.818349 | 2.053409e-52 | -8.615850e-47 |
| Msa0268570 | Msa1368270 | 0.820098 | 8.207190e-53 | -8.615850e-47 |
| Msa0268580 | Msa1368270 | 0.842844 | 2.017372e-58 | -8.615850e-47 |
| Msa0268630 | Msa1368270 | 0.838666 | 2.511341e-57 | -8.615850e-47 |
| Msa0268640 | Msa1368270 | 0.837644 | 4.603598e-57 | -8.615850e-47 |
| Msa0268720 | Msa1368270 | 0.838874 | 2.219204e-57 | -8.615850e-47 |
| Msa0268740 | Msa1368270 | 0.827652 | 1.390055e-54 | -8.615850e-47 |
| Msa0268750 | Msa1368270 | 0.819388 | 1.192496e-52 | -8.615850e-47 |
| Msa0268760 | Msa1368270 | 0.825969 | 3.507128e-54 | -8.615850e-47 |
| Msa0268830 | Msa1368270 | 0.833036 | 6.716391e-56 | -8.615850e-47 |
| Msa0268840 | Msa1368270 | 0.849516 | 3.075400e-60 | -8.615850e-47 |
| Msa0268860 | Msa1368270 | 0.817269 | 3.599043e-52 | -8.615850e-47 |
| Msa0268920 | Msa1368270 | 0.832243 | 1.056278e-55 | -8.615850e-47 |
| Msa0268940 | Msa1368270 | 0.842323 | 2.774314e-58 | -8.615850e-47 |
| Msa0268950 | Msa1368270 | 0.807293 | 5.424865e-50 | -8.615850e-47 |
| Msa0268960 | Msa1368270 | 0.828447 | 8.943352e-55 | -8.615850e-47 |
| Msa0269040 | Msa1368270 | 0.830397 | 3.006124e-55 | -8.615850e-47 |
| Msa0269050 | Msa1368270 | 0.852841 | 3.543420e-61 | -8.615850e-47 |
| Msa0269070 | Msa1368270 | 0.831037 | 2.094572e-55 | -8.615850e-47 |
| Msa0307490 | Msa1368270 | 0.817893 | 2.602988e-52 | -8.615850e-47 |
| Msa0344180 | Msa1368270 | 0.839528 | 1.501466e-57 | -8.615850e-47 |
| Msa0344190 | Msa1368270 | 0.834359 | 3.137597e-56 | -8.615850e-47 |
| Msa0344210 | Msa1368270 | 0.821115 | 4.793986e-53 | -8.615850e-47 |
| Msa0344280 | Msa1368270 | 0.857595 | 1.466609e-62 | -8.615850e-47 |
| Msa0344300 | Msa1368270 | 0.861796 | 7.973533e-64 | -8.615850e-47 |
| Msa0344310 | Msa1368270 | 0.808946 | 2.411641e-50 | -8.615850e-47 |
| Msa0344330 | Msa1368270 | 0.805871 | 1.082602e-49 | -8.615850e-47 |
| Msa1143120 | Msa1368270 | 0.835793 | 1.364451e-56 | -8.615850e-47 |
| Msa1143130 | Msa1368270 | 0.852665 | 3.977156e-61 | -8.615850e-47 |
| Msa1143160 | Msa1368270 | 0.834666 | 2.627055e-56 | -8.615850e-47 |
| Msa1143170 | Msa1368270 | 0.806337 | 8.639286e-50 | -8.615850e-47 |
| Msa1143180 | Msa1368270 | 0.817779 | 2.763272e-52 | -8.615850e-47 |
| Msa0483990 | Msa1368270 | 0.874088 | 8.871427e-68 | -8.615850e-47 |
| Msa0495270 | Msa1368270 | 0.818690 | 1.718340e-52 | -8.615850e-47 |
| Msa0516340 | Msa1368270 | 0.803461 | 3.447373e-49 | -8.615850e-47 |
| Msa0577140 | Msa1368270 | 0.818219 | 2.196757e-52 | -8.615850e-47 |
| Msa0582510 | Msa1368270 | 0.838098 | 3.519022e-57 | -8.615850e-47 |
| Msa0582520 | Msa1368270 | 0.845583 | 3.709175e-59 | -8.615850e-47 |
| Msa0582540 | Msa1368270 | 0.815180 | 1.054805e-51 | -8.615850e-47 |
| Msa0582610 | Msa1368270 | 0.824281 | 8.786157e-54 | -8.615850e-47 |
| Msa0582630 | Msa1368270 | 0.836861 | 7.300306e-57 | -8.615850e-47 |
| Msa0582640 | Msa1368270 | 0.819728 | 9.972423e-53 | -8.615850e-47 |
| Msa0582650 | Msa1368270 | 0.824084 | 9.774484e-54 | -8.615850e-47 |
| Msa0582660 | Msa1368270 | 0.820067 | 8.341674e-53 | -8.615850e-47 |
| Msa0582690 | Msa1368270 | 0.831031 | 2.102093e-55 | -8.615850e-47 |
| Msa0582700 | Msa1368270 | 0.844648 | 6.636109e-59 | -8.615850e-47 |
| Msa0582720 | Msa1368270 | 0.839085 | 1.956130e-57 | -8.615850e-47 |
| Msa0582750 | Msa1368270 | 0.845479 | 3.957882e-59 | -8.615850e-47 |
| Msa0582760 | Msa1368270 | 0.828522 | 8.582085e-55 | -8.615850e-47 |
| Msa0582770 | Msa1368270 | 0.811738 | 6.023589e-51 | -8.615850e-47 |
| Msa0582780 | Msa1368270 | 0.819889 | 9.163311e-53 | -8.615850e-47 |
| Msa0582810 | Msa1368270 | 0.830308 | 3.160131e-55 | -8.615850e-47 |
| Msa0582820 | Msa1368270 | 0.844137 | 9.109719e-59 | -8.615850e-47 |
| Msa0582840 | Msa1368270 | 0.832675 | 8.258544e-56 | -8.615850e-47 |
| Msa0582890 | Msa1368270 | 0.845095 | 5.027571e-59 | -8.615850e-47 |
| Msa0582910 | Msa1368270 | 0.835860 | 1.311799e-56 | -8.615850e-47 |
| Msa0582920 | Msa1368270 | 0.828596 | 8.235015e-55 | -8.615850e-47 |
| Msa0582930 | Msa1368270 | 0.807517 | 4.862288e-50 | -8.615850e-47 |
| Msa0591370 | Msa1368270 | 0.805785 | 1.129021e-49 | -8.615850e-47 |
| Msa0591380 | Msa1368270 | 0.800525 | 1.383608e-48 | -8.615850e-47 |
| Msa0867640 | Msa1368270 | 0.875192 | 3.739555e-68 | -8.615850e-47 |
| Msa0867650 | Msa1368270 | 0.856873 | 2.396773e-62 | -8.615850e-47 |
| Msa0883880 | Msa1368270 | 0.813172 | 2.928274e-51 | -8.615850e-47 |
| Msa0924830 | Msa1368270 | 0.802480 | 5.500328e-49 | -8.615850e-47 |
| Msa0924850 | Msa1368270 | 0.838058 | 3.603382e-57 | -8.615850e-47 |
| Msa0924870 | Msa1368270 | 0.818231 | 2.183186e-52 | -8.615850e-47 |
| Msa0924880 | Msa1368270 | 0.828809 | 7.312778e-55 | -8.615850e-47 |
| Msa0924990 | Msa1368270 | 0.852411 | 4.699838e-61 | -8.615850e-47 |
| Msa0925040 | Msa1368270 | 0.843447 | 1.393134e-58 | -8.615850e-47 |
| Msa0931070 | Msa1368270 | 0.837046 | 6.547168e-57 | -8.615850e-47 |
| Msa0931080 | Msa1368270 | 0.841726 | 3.988811e-58 | -8.615850e-47 |
| Msa0931100 | Msa1368270 | 0.854794 | 9.707230e-62 | -8.615850e-47 |
| Msa0931110 | Msa1368270 | 0.809303 | 2.022679e-50 | -8.615850e-47 |
| Msa0931130 | Msa1368270 | 0.839578 | 1.457361e-57 | -8.615850e-47 |
| Msa0931140 | Msa1368270 | 0.841936 | 3.512239e-58 | -8.615850e-47 |
| Msa0931160 | Msa1368270 | 0.823589 | 1.277072e-53 | -8.615850e-47 |
| Msa0931190 | Msa1368270 | 0.845925 | 2.996488e-59 | -8.615850e-47 |
| Msa0931210 | Msa1368270 | 0.857880 | 1.207548e-62 | -8.615850e-47 |
| Msa0931230 | Msa1368270 | 0.821183 | 4.623335e-53 | -8.615850e-47 |
| Msa0931240 | Msa1368270 | 0.822382 | 2.440526e-53 | -8.615850e-47 |
| Msa0931260 | Msa1368270 | 0.832885 | 7.322538e-56 | -8.615850e-47 |
| Msa0931270 | Msa1368270 | 0.832735 | 7.976915e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368270 | MtrunA17_Chr7g0229301 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1368270 | MtrunA17_Chr6g0454441 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1368270 | MtrunA17_Chr4g0016451 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1368270 | MtrunA17_Chr6g0466281 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1368270 | MtrunA17_CPg0493311 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1368270 | MtrunA17_Chr7g0229661 | 84.080 | 201 | 13 | 1 | 1 | 201 | 1 | 182 | 1.89e-115 | 327 |
| Msa1368270 | MtrunA17_Chr4g0015291 | 97.436 | 156 | 4 | 0 | 1 | 156 | 1 | 156 | 3.32e-108 | 307 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368270 | ATCG00380.1 | 88.060 | 201 | 24 | 0 | 1 | 201 | 1 | 201 | 2.12e-126 | 355 |
Find 33 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATAATAGATAGTAAA+TGG | 0.189787 | tig0018631:+46456 | Msa1368270:CDS |
| GATTGACTAATCCTTTATAT+TGG | 0.284280 | tig0018631:-46436 | None:intergenic |
| CTTGATCCATTCCAATATAA+AGG | 0.291752 | tig0018631:+46425 | Msa1368270:CDS |
| CTTAAATACGTTCGTATCGC+TGG | 0.342652 | tig0018631:+46125 | Msa1368270:CDS |
| ACAATTACTTGAAATGCGTT+TGG | 0.359489 | tig0018631:+46181 | Msa1368270:CDS |
| TTTGAAAATTAATGAATTGC+TGG | 0.365999 | tig0018631:+46484 | Msa1368270:CDS |
| ATGGATTGGCAATTCTTCGC+GGG | 0.450528 | tig0018631:-46396 | None:intergenic |
| TACCAGGACTAACTAGTAAA+CGG | 0.463029 | tig0018631:+45982 | Msa1368270:CDS |
| TGAGGTTTGCAACGATAACT+TGG | 0.468099 | tig0018631:-46305 | None:intergenic |
| ACTAATCCTTTATATTGGAA+TGG | 0.475526 | tig0018631:-46431 | None:intergenic |
| GTCTGTGGTTAACTAATTGA+CGG | 0.477609 | tig0018631:-46250 | None:intergenic |
| TCAAATAATAGATAGTAAAT+GGG | 0.487910 | tig0018631:+46457 | Msa1368270:CDS |
| ATAATAGATAGTAAATGGGT+TGG | 0.504615 | tig0018631:+46461 | Msa1368270:CDS |
| CTAAGTTCGCTTCCAACTGT+AGG | 0.508663 | tig0018631:-46005 | None:intergenic |
| GGATCAAGAGTCAAATGGAT+TGG | 0.511159 | tig0018631:-46410 | None:intergenic |
| GGAAAAGCGAAAGGTTCAAC+CGG | 0.516182 | tig0018631:+46146 | Msa1368270:CDS |
| TCTGTGGTTAACTAATTGAC+GGG | 0.521261 | tig0018631:-46249 | None:intergenic |
| GGCCGTTTACTAGTTAGTCC+TGG | 0.527000 | tig0018631:-45984 | None:intergenic |
| AATGGATTGGCAATTCTTCG+CGG | 0.545268 | tig0018631:-46397 | None:intergenic |
| TCAAGATATTATTACAGCGA+AGG | 0.559737 | tig0018631:+46325 | Msa1368270:CDS |
| TTCGCTGTAATAATATCTTG+AGG | 0.560954 | tig0018631:-46323 | None:intergenic |
| TAATTGTAGTAAAACTTGAC+CGG | 0.568250 | tig0018631:-46165 | None:intergenic |
| ACTAGTAAACGGCCTACAGT+TGG | 0.568372 | tig0018631:+45993 | Msa1368270:CDS |
| CAAGATATTATTACAGCGAA+GGG | 0.569002 | tig0018631:+46326 | Msa1368270:CDS |
| TTAACTAATTGACGGGCTTG+AGG | 0.581554 | tig0018631:-46242 | None:intergenic |
| GGAATGGATCAAGAGTCAAA+TGG | 0.582974 | tig0018631:-46415 | None:intergenic |
| GATTGGCAATTCTTCGCGGG+GGG | 0.584547 | tig0018631:-46393 | None:intergenic |
| TGGATTGGCAATTCTTCGCG+GGG | 0.610754 | tig0018631:-46395 | None:intergenic |
| TGTTTATGTCACGTTACAGA+GGG | 0.632465 | tig0018631:+45925 | None:intergenic |
| GTGTTTATGTCACGTTACAG+AGG | 0.633128 | tig0018631:+45924 | None:intergenic |
| CGTATCGCTGGAAAAGCGAA+AGG | 0.633501 | tig0018631:+46137 | Msa1368270:CDS |
| CATTAACTAAAACATGTCTG+TGG | 0.663264 | tig0018631:-46265 | None:intergenic |
| GGATTGGCAATTCTTCGCGG+GGG | 0.681198 | tig0018631:-46394 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAATAATAGATAGTAAA+TGG | + | tig0018631:46456-46475 | Msa1368270:CDS | 15.0% |
| !! | TCAAATAATAGATAGTAAAT+GGG | + | tig0018631:46457-46476 | Msa1368270:CDS | 15.0% |
| !! | TTTGAAAATTAATGAATTGC+TGG | + | tig0018631:46484-46503 | Msa1368270:CDS | 20.0% |
| !! | CAAAAATTGCGTTTTCATTA+TGG | + | tig0018631:46083-46102 | Msa1368270:CDS | 25.0% |
| ! | TAATTGTAGTAAAACTTGAC+CGG | - | tig0018631:46168-46187 | None:intergenic | 25.0% |
| !!! | GATAACATACTTTTTCGATT+GGG | + | tig0018631:46203-46222 | Msa1368270:CDS | 25.0% |
| ! | ACTAATCCTTTATATTGGAA+TGG | - | tig0018631:46434-46453 | None:intergenic | 25.0% |
| ! | GATTGACTAATCCTTTATAT+TGG | - | tig0018631:46439-46458 | None:intergenic | 25.0% |
| ! | ATAATAGATAGTAAATGGGT+TGG | + | tig0018631:46461-46480 | Msa1368270:CDS | 25.0% |
| TTTCAAAAAAATACGTCGTC+TGG | + | tig0018631:45953-45972 | Msa1368270:CDS | 30.0% | |
| TTCAAAAAAATACGTCGTCT+GGG | + | tig0018631:45954-45973 | Msa1368270:CDS | 30.0% | |
| ACAATTACTTGAAATGCGTT+TGG | + | tig0018631:46181-46200 | Msa1368270:CDS | 30.0% | |
| !!! | GGATAACATACTTTTTCGAT+TGG | + | tig0018631:46202-46221 | Msa1368270:CDS | 30.0% |
| CATTAACTAAAACATGTCTG+TGG | - | tig0018631:46268-46287 | None:intergenic | 30.0% | |
| !!! | CACAGACATGTTTTAGTTAA+TGG | + | tig0018631:46266-46285 | Msa1368270:CDS | 30.0% |
| TTCGCTGTAATAATATCTTG+AGG | - | tig0018631:46326-46345 | None:intergenic | 30.0% | |
| TCAAGATATTATTACAGCGA+AGG | + | tig0018631:46325-46344 | Msa1368270:CDS | 30.0% | |
| CAAGATATTATTACAGCGAA+GGG | + | tig0018631:46326-46345 | Msa1368270:CDS | 30.0% | |
| CTTGATCCATTCCAATATAA+AGG | + | tig0018631:46425-46444 | Msa1368270:CDS | 30.0% | |
| !!! | CGACGTATTTTTTTGAAACG+AGG | - | tig0018631:45951-45970 | None:intergenic | 35.0% |
| TCAAAAAAATACGTCGTCTG+GGG | + | tig0018631:45955-45974 | Msa1368270:CDS | 35.0% | |
| TACCAGGACTAACTAGTAAA+CGG | + | tig0018631:45982-46001 | Msa1368270:CDS | 35.0% | |
| !!! | CATACTTTTTCGATTGGGTA+TGG | + | tig0018631:46208-46227 | Msa1368270:CDS | 35.0% |
| TCTGTGGTTAACTAATTGAC+GGG | - | tig0018631:46252-46271 | None:intergenic | 35.0% | |
| GTCTGTGGTTAACTAATTGA+CGG | - | tig0018631:46253-46272 | None:intergenic | 35.0% | |
| CAAAAAAATACGTCGTCTGG+GGG | + | tig0018631:45956-45975 | Msa1368270:CDS | 40.0% | |
| !!! | ATTTTTTACTCGAGCGCGAT+TGG | - | tig0018631:46034-46053 | None:intergenic | 40.0% |
| CTTAAATACGTTCGTATCGC+TGG | + | tig0018631:46125-46144 | Msa1368270:CDS | 40.0% | |
| !! | TTAACTAATTGACGGGCTTG+AGG | - | tig0018631:46245-46264 | None:intergenic | 40.0% |
| TGAGGTTTGCAACGATAACT+TGG | - | tig0018631:46308-46327 | None:intergenic | 40.0% | |
| !! | AATGGATTGGCAATTCTTCG+CGG | - | tig0018631:46400-46419 | None:intergenic | 40.0% |
| GGATCAAGAGTCAAATGGAT+TGG | - | tig0018631:46413-46432 | None:intergenic | 40.0% | |
| GGAATGGATCAAGAGTCAAA+TGG | - | tig0018631:46418-46437 | None:intergenic | 40.0% | |
| ACTAGTAAACGGCCTACAGT+TGG | + | tig0018631:45993-46012 | Msa1368270:CDS | 45.0% | |
| CTAAGTTCGCTTCCAACTGT+AGG | - | tig0018631:46008-46027 | None:intergenic | 45.0% | |
| GGAAAAGCGAAAGGTTCAAC+CGG | + | tig0018631:46146-46165 | Msa1368270:CDS | 45.0% | |
| !! | ATGGATTGGCAATTCTTCGC+GGG | - | tig0018631:46399-46418 | None:intergenic | 45.0% |
| GGCCGTTTACTAGTTAGTCC+TGG | - | tig0018631:45987-46006 | None:intergenic | 50.0% | |
| CGTATCGCTGGAAAAGCGAA+AGG | + | tig0018631:46137-46156 | Msa1368270:CDS | 50.0% | |
| !! | TGGATTGGCAATTCTTCGCG+GGG | - | tig0018631:46398-46417 | None:intergenic | 50.0% |
| GATTGGCAATTCTTCGCGGG+GGG | - | tig0018631:46396-46415 | None:intergenic | 55.0% | |
| ! | GGATTGGCAATTCTTCGCGG+GGG | - | tig0018631:46397-46416 | None:intergenic | 55.0% |
| CGTCGTCTGGGGGCTTTACC+AGG | + | tig0018631:45966-45985 | Msa1368270:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018631 | gene | 45930 | 46535 | 45930 | ID=Msa1368270;Name=Msa1368270 |
| tig0018631 | mRNA | 45930 | 46535 | 45930 | ID=Msa1368270-mRNA-1;Parent=Msa1368270;Name=Msa1368270-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|201 |
| tig0018631 | exon | 45930 | 46535 | 45930 | ID=Msa1368270-mRNA-1:exon:383;Parent=Msa1368270-mRNA-1 |
| tig0018631 | CDS | 45930 | 46535 | 45930 | ID=Msa1368270-mRNA-1:cds;Parent=Msa1368270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
