Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398700 | YP_009141600.1 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 3.55e-143 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398700 | sp|Q9BBT5|RR4_LOTJA | 95.522 | 201 | 9 | 0 | 1 | 201 | 1 | 201 | 8.95e-140 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398700 | A0A0F6NLD0 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 1.70e-143 | 407 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095170 | Msa1398700 | 0.803219 | 3.869668e-49 | -8.615850e-47 |
| Msa0095190 | Msa1398700 | 0.827310 | 1.678773e-54 | -8.615850e-47 |
| Msa1354320 | Msa1398700 | 0.801804 | 7.575467e-49 | -8.615850e-47 |
| Msa1354330 | Msa1398700 | 0.813112 | 3.017966e-51 | -8.615850e-47 |
| Msa1354340 | Msa1398700 | 0.804122 | 2.513596e-49 | -8.615850e-47 |
| Msa1354350 | Msa1398700 | 0.863336 | 2.676840e-64 | -8.615850e-47 |
| Msa1354380 | Msa1398700 | 0.865994 | 3.943174e-65 | -8.615850e-47 |
| Msa1354390 | Msa1398700 | 0.865936 | 4.112754e-65 | -8.615850e-47 |
| Msa1354900 | Msa1398700 | 0.844687 | 6.480811e-59 | -8.615850e-47 |
| Msa1354910 | Msa1398700 | 0.820807 | 5.642792e-53 | -8.615850e-47 |
| Msa1354930 | Msa1398700 | 0.845961 | 2.929414e-59 | -8.615850e-47 |
| Msa1354950 | Msa1398700 | 0.859255 | 4.693310e-63 | -8.615850e-47 |
| Msa1355070 | Msa1398700 | 0.850355 | 1.791492e-60 | -8.615850e-47 |
| Msa1355080 | Msa1398700 | 0.824700 | 7.004175e-54 | -8.615850e-47 |
| Msa1355100 | Msa1398700 | 0.833888 | 4.117036e-56 | -8.615850e-47 |
| Msa1366000 | Msa1398700 | 0.817288 | 3.564180e-52 | -8.615850e-47 |
| Msa1366010 | Msa1398700 | 0.831818 | 1.345157e-55 | -8.615850e-47 |
| Msa1366040 | Msa1398700 | 0.830217 | 3.325712e-55 | -8.615850e-47 |
| Msa1366050 | Msa1398700 | 0.825181 | 5.392465e-54 | -8.615850e-47 |
| Msa1368270 | Msa1398700 | 0.855811 | 4.908776e-62 | -8.615850e-47 |
| Msa1368280 | Msa1398700 | 0.848799 | 4.868830e-60 | -8.615850e-47 |
| Msa1368290 | Msa1398700 | 0.868917 | 4.570359e-66 | -8.615850e-47 |
| Msa1368300 | Msa1398700 | 0.848691 | 5.217513e-60 | -8.615850e-47 |
| Msa1380590 | Msa1398700 | 0.822222 | 2.659416e-53 | -8.615850e-47 |
| Msa1380600 | Msa1398700 | 0.837453 | 5.153002e-57 | -8.615850e-47 |
| Msa1380620 | Msa1398700 | 0.813134 | 2.985119e-51 | -8.615850e-47 |
| Msa1380640 | Msa1398700 | 0.860430 | 2.077553e-63 | -8.615850e-47 |
| Msa1380710 | Msa1398700 | 0.825786 | 3.877636e-54 | -8.615850e-47 |
| Msa1385370 | Msa1398700 | 0.837933 | 3.878592e-57 | -8.615850e-47 |
| Msa1385380 | Msa1398700 | 0.801387 | 9.221080e-49 | -8.615850e-47 |
| Msa1394040 | Msa1398700 | 0.835451 | 1.665096e-56 | -8.615850e-47 |
| Msa1394060 | Msa1398700 | 0.804823 | 1.795178e-49 | -8.615850e-47 |
| Msa1394150 | Msa1398700 | 0.828930 | 6.835764e-55 | -8.615850e-47 |
| Msa1394210 | Msa1398700 | 0.808177 | 3.520719e-50 | -8.615850e-47 |
| Msa1394220 | Msa1398700 | 0.830741 | 2.475787e-55 | -8.615850e-47 |
| Msa1394230 | Msa1398700 | 0.838427 | 2.895393e-57 | -8.615850e-47 |
| Msa1394250 | Msa1398700 | 0.803194 | 3.916442e-49 | -8.615850e-47 |
| Msa1398700 | Msa1398710 | 0.831180 | 1.931387e-55 | -8.615850e-47 |
| Msa1398700 | Msa1398720 | 0.894613 | 2.092035e-75 | -8.615850e-47 |
| Msa1398700 | Msa1400330 | 0.816874 | 4.416601e-52 | -8.615850e-47 |
| Msa0704750 | Msa1398700 | 0.818970 | 1.484644e-52 | -8.615850e-47 |
| Msa0186750 | Msa1398700 | 0.805501 | 1.295171e-49 | -8.615850e-47 |
| Msa0202640 | Msa1398700 | 0.817303 | 3.537134e-52 | -8.615850e-47 |
| Msa1269400 | Msa1398700 | 0.832553 | 8.854388e-56 | -8.615850e-47 |
| Msa1269410 | Msa1398700 | 0.802318 | 5.938799e-49 | -8.615850e-47 |
| Msa1269420 | Msa1398700 | 0.871091 | 8.895273e-67 | -8.615850e-47 |
| Msa1305090 | Msa1398700 | 0.810743 | 9.903703e-51 | -8.615850e-47 |
| Msa0370210 | Msa1398700 | 0.811318 | 7.434613e-51 | -8.615850e-47 |
| Msa0398630 | Msa1398700 | 0.807433 | 5.067469e-50 | -8.615850e-47 |
| Msa0983720 | Msa1398700 | 0.836757 | 7.762004e-57 | -8.615850e-47 |
| Msa1084630 | Msa1398700 | 0.818109 | 2.327024e-52 | -8.615850e-47 |
| Msa1086070 | Msa1398700 | 0.845544 | 3.801422e-59 | -8.615850e-47 |
| Msa1086080 | Msa1398700 | 0.814256 | 1.690337e-51 | -8.615850e-47 |
| Msa1086100 | Msa1398700 | 0.833288 | 5.812673e-56 | -8.615850e-47 |
| Msa1086140 | Msa1398700 | 0.817849 | 2.663553e-52 | -8.615850e-47 |
| Msa1086150 | Msa1398700 | 0.830994 | 2.145765e-55 | -8.615850e-47 |
| Msa1086180 | Msa1398700 | 0.848227 | 7.009662e-60 | -8.615850e-47 |
| Msa1086190 | Msa1398700 | 0.816297 | 5.947703e-52 | -8.615850e-47 |
| Msa1086210 | Msa1398700 | 0.826779 | 2.249485e-54 | -8.615850e-47 |
| Msa1086250 | Msa1398700 | 0.803209 | 3.887398e-49 | -8.615850e-47 |
| Msa1086260 | Msa1398700 | 0.822497 | 2.295598e-53 | -8.615850e-47 |
| Msa1086270 | Msa1398700 | 0.808272 | 3.359942e-50 | -8.615850e-47 |
| Msa1086280 | Msa1398700 | 0.839910 | 1.194635e-57 | -8.615850e-47 |
| Msa1086380 | Msa1398700 | 0.839833 | 1.250471e-57 | -8.615850e-47 |
| Msa1086430 | Msa1398700 | 0.801711 | 7.915595e-49 | -8.615850e-47 |
| Msa1086450 | Msa1398700 | 0.835914 | 1.271090e-56 | -8.615850e-47 |
| Msa1086470 | Msa1398700 | 0.831501 | 1.610410e-55 | -8.615850e-47 |
| Msa1086660 | Msa1398700 | 0.802067 | 6.688181e-49 | -8.615850e-47 |
| Msa1086880 | Msa1398700 | 0.835481 | 1.636566e-56 | -8.615850e-47 |
| Msa1086890 | Msa1398700 | 0.829652 | 4.566675e-55 | -8.615850e-47 |
| Msa1086910 | Msa1398700 | 0.828632 | 8.069696e-55 | -8.615850e-47 |
| Msa0268170 | Msa1398700 | 0.842221 | 2.951402e-58 | -8.615850e-47 |
| Msa0268390 | Msa1398700 | 0.844806 | 6.019089e-59 | -8.615850e-47 |
| Msa0268400 | Msa1398700 | 0.841041 | 6.041593e-58 | -8.615850e-47 |
| Msa0268410 | Msa1398700 | 0.839391 | 1.630047e-57 | -8.615850e-47 |
| Msa0268530 | Msa1398700 | 0.808898 | 2.470053e-50 | -8.615850e-47 |
| Msa0268550 | Msa1398700 | 0.853908 | 1.750847e-61 | -8.615850e-47 |
| Msa0268560 | Msa1398700 | 0.829245 | 5.735160e-55 | -8.615850e-47 |
| Msa0268580 | Msa1398700 | 0.829079 | 6.290761e-55 | -8.615850e-47 |
| Msa0268630 | Msa1398700 | 0.815953 | 7.097418e-52 | -8.615850e-47 |
| Msa0268640 | Msa1398700 | 0.841612 | 4.275597e-58 | -8.615850e-47 |
| Msa0268720 | Msa1398700 | 0.809342 | 1.983675e-50 | -8.615850e-47 |
| Msa0268740 | Msa1398700 | 0.841084 | 5.887490e-58 | -8.615850e-47 |
| Msa0268760 | Msa1398700 | 0.807676 | 4.500195e-50 | -8.615850e-47 |
| Msa0268830 | Msa1398700 | 0.818043 | 2.408354e-52 | -8.615850e-47 |
| Msa0268840 | Msa1398700 | 0.826016 | 3.419254e-54 | -8.615850e-47 |
| Msa0268920 | Msa1398700 | 0.805586 | 1.242600e-49 | -8.615850e-47 |
| Msa0268940 | Msa1398700 | 0.842777 | 2.102409e-58 | -8.615850e-47 |
| Msa0268950 | Msa1398700 | 0.818989 | 1.469485e-52 | -8.615850e-47 |
| Msa0269040 | Msa1398700 | 0.821350 | 4.231379e-53 | -8.615850e-47 |
| Msa0269050 | Msa1398700 | 0.835734 | 1.412252e-56 | -8.615850e-47 |
| Msa0307490 | Msa1398700 | 0.821803 | 3.325042e-53 | -8.615850e-47 |
| Msa0344180 | Msa1398700 | 0.802388 | 5.744504e-49 | -8.615850e-47 |
| Msa0344190 | Msa1398700 | 0.839540 | 1.490350e-57 | -8.615850e-47 |
| Msa0344280 | Msa1398700 | 0.800816 | 1.206751e-48 | -8.615850e-47 |
| Msa0344300 | Msa1398700 | 0.835275 | 1.844742e-56 | -8.615850e-47 |
| Msa0344310 | Msa1398700 | 0.813596 | 2.362219e-51 | -8.615850e-47 |
| Msa1143120 | Msa1398700 | 0.815144 | 1.074822e-51 | -8.615850e-47 |
| Msa1143130 | Msa1398700 | 0.827025 | 1.964792e-54 | -8.615850e-47 |
| Msa1143160 | Msa1398700 | 0.849478 | 3.151475e-60 | -8.615850e-47 |
| Msa1143180 | Msa1398700 | 0.814873 | 1.234210e-51 | -8.615850e-47 |
| Msa1197210 | Msa1398700 | 0.803024 | 4.247338e-49 | -8.615850e-47 |
| Msa0483990 | Msa1398700 | 0.815416 | 9.348067e-52 | -8.615850e-47 |
| Msa0577140 | Msa1398700 | 0.820084 | 8.269850e-53 | -8.615850e-47 |
| Msa0582510 | Msa1398700 | 0.818682 | 1.725855e-52 | -8.615850e-47 |
| Msa0582520 | Msa1398700 | 0.836344 | 9.884673e-57 | -8.615850e-47 |
| Msa0582630 | Msa1398700 | 0.839646 | 1.398895e-57 | -8.615850e-47 |
| Msa0582640 | Msa1398700 | 0.818532 | 1.866294e-52 | -8.615850e-47 |
| Msa0582660 | Msa1398700 | 0.823216 | 1.560836e-53 | -8.615850e-47 |
| Msa0582690 | Msa1398700 | 0.812435 | 4.246934e-51 | -8.615850e-47 |
| Msa0582700 | Msa1398700 | 0.842892 | 1.958658e-58 | -8.615850e-47 |
| Msa0582720 | Msa1398700 | 0.806223 | 9.128494e-50 | -8.615850e-47 |
| Msa0582750 | Msa1398700 | 0.847757 | 9.446853e-60 | -8.615850e-47 |
| Msa0582760 | Msa1398700 | 0.830974 | 2.170438e-55 | -8.615850e-47 |
| Msa0582780 | Msa1398700 | 0.826069 | 3.320715e-54 | -8.615850e-47 |
| Msa0582810 | Msa1398700 | 0.814457 | 1.525680e-51 | -8.615850e-47 |
| Msa0582820 | Msa1398700 | 0.822775 | 1.977648e-53 | -8.615850e-47 |
| Msa0582890 | Msa1398700 | 0.800843 | 1.191470e-48 | -8.615850e-47 |
| Msa0582910 | Msa1398700 | 0.832785 | 7.755294e-56 | -8.615850e-47 |
| Msa0582930 | Msa1398700 | 0.818451 | 1.947160e-52 | -8.615850e-47 |
| Msa0591370 | Msa1398700 | 0.820557 | 6.440830e-53 | -8.615850e-47 |
| Msa0591380 | Msa1398700 | 0.803414 | 3.525372e-49 | -8.615850e-47 |
| Msa0867640 | Msa1398700 | 0.831355 | 1.749337e-55 | -8.615850e-47 |
| Msa0867650 | Msa1398700 | 0.820813 | 5.624541e-53 | -8.615850e-47 |
| Msa0924850 | Msa1398700 | 0.801172 | 1.020709e-48 | -8.615850e-47 |
| Msa0924870 | Msa1398700 | 0.833667 | 4.676197e-56 | -8.615850e-47 |
| Msa0924890 | Msa1398700 | 0.802709 | 4.933736e-49 | -8.615850e-47 |
| Msa0924990 | Msa1398700 | 0.807103 | 5.951352e-50 | -8.615850e-47 |
| Msa0925040 | Msa1398700 | 0.819744 | 9.889379e-53 | -8.615850e-47 |
| Msa0931070 | Msa1398700 | 0.824520 | 7.721339e-54 | -8.615850e-47 |
| Msa0931080 | Msa1398700 | 0.848114 | 7.534714e-60 | -8.615850e-47 |
| Msa0931100 | Msa1398700 | 0.809852 | 1.541366e-50 | -8.615850e-47 |
| Msa0931130 | Msa1398700 | 0.816832 | 4.512281e-52 | -8.615850e-47 |
| Msa0931140 | Msa1398700 | 0.846167 | 2.574375e-59 | -8.615850e-47 |
| Msa0931210 | Msa1398700 | 0.817054 | 4.022940e-52 | -8.615850e-47 |
| Msa0931240 | Msa1398700 | 0.834252 | 3.336754e-56 | -8.615850e-47 |
| Msa0931260 | Msa1398700 | 0.813125 | 2.998372e-51 | -8.615850e-47 |
| Msa0931270 | Msa1398700 | 0.832741 | 7.952346e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398700 | MtrunA17_Chr7g0229301 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1398700 | MtrunA17_Chr6g0454441 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1398700 | MtrunA17_Chr4g0016451 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1398700 | MtrunA17_Chr6g0466281 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1398700 | MtrunA17_CPg0493311 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1398700 | MtrunA17_Chr7g0229661 | 84.080 | 201 | 13 | 1 | 1 | 201 | 1 | 182 | 1.89e-115 | 327 |
| Msa1398700 | MtrunA17_Chr4g0015291 | 97.436 | 156 | 4 | 0 | 1 | 156 | 1 | 156 | 3.32e-108 | 307 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398700 | ATCG00380.1 | 88.060 | 201 | 24 | 0 | 1 | 201 | 1 | 201 | 2.12e-126 | 355 |
Find 33 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATAATAGATAGTAAA+TGG | 0.189787 | tig0022279:-8362 | Msa1398700:CDS |
| GATTGACTAATCCTTTATAT+TGG | 0.284280 | tig0022279:+8382 | None:intergenic |
| CTTGATCCATTCCAATATAA+AGG | 0.291752 | tig0022279:-8393 | Msa1398700:CDS |
| CTTAAATACGTTCGTATCGC+TGG | 0.342652 | tig0022279:-8693 | Msa1398700:CDS |
| ACAATTACTTGAAATGCGTT+TGG | 0.359489 | tig0022279:-8637 | Msa1398700:CDS |
| TTTGAAAATTAATGAATTGC+TGG | 0.365999 | tig0022279:-8334 | Msa1398700:CDS |
| ATGGATTGGCAATTCTTCGC+GGG | 0.450528 | tig0022279:+8422 | None:intergenic |
| TACCAGGACTAACTAGTAAA+CGG | 0.463029 | tig0022279:-8836 | Msa1398700:CDS |
| TGAGGTTTGCAACGATAACT+TGG | 0.468099 | tig0022279:+8513 | None:intergenic |
| ACTAATCCTTTATATTGGAA+TGG | 0.475526 | tig0022279:+8387 | None:intergenic |
| GTCTGTGGTTAACTAATTGA+CGG | 0.477609 | tig0022279:+8568 | None:intergenic |
| TCAAATAATAGATAGTAAAT+GGG | 0.487910 | tig0022279:-8361 | Msa1398700:CDS |
| ATAATAGATAGTAAATGGGT+TGG | 0.504615 | tig0022279:-8357 | Msa1398700:CDS |
| CTAAGTTCGCTTCCAACTGT+AGG | 0.508663 | tig0022279:+8813 | None:intergenic |
| GGATCAAGAGTCAAATGGAT+TGG | 0.511159 | tig0022279:+8408 | None:intergenic |
| GGAAAAGCGAAAGGTTCAAC+CGG | 0.516182 | tig0022279:-8672 | Msa1398700:CDS |
| TCTGTGGTTAACTAATTGAC+GGG | 0.521261 | tig0022279:+8569 | None:intergenic |
| GGCCGTTTACTAGTTAGTCC+TGG | 0.527000 | tig0022279:+8834 | None:intergenic |
| AATGGATTGGCAATTCTTCG+CGG | 0.545268 | tig0022279:+8421 | None:intergenic |
| TCAAGATATTATTACAGCGA+AGG | 0.559737 | tig0022279:-8493 | Msa1398700:CDS |
| TTCGCTGTAATAATATCTTG+AGG | 0.560954 | tig0022279:+8495 | None:intergenic |
| TAATTGTAGTAAAACTTGAC+CGG | 0.568250 | tig0022279:+8653 | None:intergenic |
| ACTAGTAAACGGCCTACAGT+TGG | 0.568372 | tig0022279:-8825 | Msa1398700:CDS |
| CAAGATATTATTACAGCGAA+GGG | 0.569002 | tig0022279:-8492 | Msa1398700:CDS |
| TTAACTAATTGACGGGCTTG+AGG | 0.581554 | tig0022279:+8576 | None:intergenic |
| GGAATGGATCAAGAGTCAAA+TGG | 0.582974 | tig0022279:+8403 | None:intergenic |
| GATTGGCAATTCTTCGCGGG+GGG | 0.584547 | tig0022279:+8425 | None:intergenic |
| TGGATTGGCAATTCTTCGCG+GGG | 0.610754 | tig0022279:+8423 | None:intergenic |
| TGTTTATGTCACGTTACAGA+GGG | 0.632465 | tig0022279:-8893 | None:intergenic |
| GTGTTTATGTCACGTTACAG+AGG | 0.633128 | tig0022279:-8894 | None:intergenic |
| CGTATCGCTGGAAAAGCGAA+AGG | 0.633501 | tig0022279:-8681 | Msa1398700:CDS |
| CATTAACTAAAACATGTCTG+TGG | 0.663264 | tig0022279:+8553 | None:intergenic |
| GGATTGGCAATTCTTCGCGG+GGG | 0.681198 | tig0022279:+8424 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAATAATAGATAGTAAA+TGG | - | tig0022279:8831-8850 | Msa1398700:CDS | 15.0% |
| !! | TCAAATAATAGATAGTAAAT+GGG | - | tig0022279:8832-8851 | Msa1398700:CDS | 15.0% |
| !! | TTTGAAAATTAATGAATTGC+TGG | - | tig0022279:8859-8878 | Msa1398700:CDS | 20.0% |
| !! | CAAAAATTGCGTTTTCATTA+TGG | - | tig0022279:8458-8477 | Msa1398700:CDS | 25.0% |
| ! | TAATTGTAGTAAAACTTGAC+CGG | + | tig0022279:8543-8562 | None:intergenic | 25.0% |
| !!! | GATAACATACTTTTTCGATT+GGG | - | tig0022279:8578-8597 | Msa1398700:CDS | 25.0% |
| ! | ACTAATCCTTTATATTGGAA+TGG | + | tig0022279:8809-8828 | None:intergenic | 25.0% |
| ! | GATTGACTAATCCTTTATAT+TGG | + | tig0022279:8814-8833 | None:intergenic | 25.0% |
| ! | ATAATAGATAGTAAATGGGT+TGG | - | tig0022279:8836-8855 | Msa1398700:CDS | 25.0% |
| TTTCAAAAAAATACGTCGTC+TGG | - | tig0022279:8328-8347 | Msa1398700:CDS | 30.0% | |
| TTCAAAAAAATACGTCGTCT+GGG | - | tig0022279:8329-8348 | Msa1398700:CDS | 30.0% | |
| ACAATTACTTGAAATGCGTT+TGG | - | tig0022279:8556-8575 | Msa1398700:CDS | 30.0% | |
| !!! | GGATAACATACTTTTTCGAT+TGG | - | tig0022279:8577-8596 | Msa1398700:CDS | 30.0% |
| CATTAACTAAAACATGTCTG+TGG | + | tig0022279:8643-8662 | None:intergenic | 30.0% | |
| !!! | CACAGACATGTTTTAGTTAA+TGG | - | tig0022279:8641-8660 | Msa1398700:CDS | 30.0% |
| TTCGCTGTAATAATATCTTG+AGG | + | tig0022279:8701-8720 | None:intergenic | 30.0% | |
| TCAAGATATTATTACAGCGA+AGG | - | tig0022279:8700-8719 | Msa1398700:CDS | 30.0% | |
| CAAGATATTATTACAGCGAA+GGG | - | tig0022279:8701-8720 | Msa1398700:CDS | 30.0% | |
| CTTGATCCATTCCAATATAA+AGG | - | tig0022279:8800-8819 | Msa1398700:CDS | 30.0% | |
| !!! | CGACGTATTTTTTTGAAACG+AGG | + | tig0022279:8326-8345 | None:intergenic | 35.0% |
| TCAAAAAAATACGTCGTCTG+GGG | - | tig0022279:8330-8349 | Msa1398700:CDS | 35.0% | |
| TACCAGGACTAACTAGTAAA+CGG | - | tig0022279:8357-8376 | Msa1398700:CDS | 35.0% | |
| !!! | CATACTTTTTCGATTGGGTA+TGG | - | tig0022279:8583-8602 | Msa1398700:CDS | 35.0% |
| TCTGTGGTTAACTAATTGAC+GGG | + | tig0022279:8627-8646 | None:intergenic | 35.0% | |
| GTCTGTGGTTAACTAATTGA+CGG | + | tig0022279:8628-8647 | None:intergenic | 35.0% | |
| CAAAAAAATACGTCGTCTGG+GGG | - | tig0022279:8331-8350 | Msa1398700:CDS | 40.0% | |
| !!! | ATTTTTTACTCGAGCGCGAT+TGG | + | tig0022279:8409-8428 | None:intergenic | 40.0% |
| CTTAAATACGTTCGTATCGC+TGG | - | tig0022279:8500-8519 | Msa1398700:CDS | 40.0% | |
| !! | TTAACTAATTGACGGGCTTG+AGG | + | tig0022279:8620-8639 | None:intergenic | 40.0% |
| TGAGGTTTGCAACGATAACT+TGG | + | tig0022279:8683-8702 | None:intergenic | 40.0% | |
| !! | AATGGATTGGCAATTCTTCG+CGG | + | tig0022279:8775-8794 | None:intergenic | 40.0% |
| GGATCAAGAGTCAAATGGAT+TGG | + | tig0022279:8788-8807 | None:intergenic | 40.0% | |
| GGAATGGATCAAGAGTCAAA+TGG | + | tig0022279:8793-8812 | None:intergenic | 40.0% | |
| ACTAGTAAACGGCCTACAGT+TGG | - | tig0022279:8368-8387 | Msa1398700:CDS | 45.0% | |
| CTAAGTTCGCTTCCAACTGT+AGG | + | tig0022279:8383-8402 | None:intergenic | 45.0% | |
| GGAAAAGCGAAAGGTTCAAC+CGG | - | tig0022279:8521-8540 | Msa1398700:CDS | 45.0% | |
| !! | ATGGATTGGCAATTCTTCGC+GGG | + | tig0022279:8774-8793 | None:intergenic | 45.0% |
| GGCCGTTTACTAGTTAGTCC+TGG | + | tig0022279:8362-8381 | None:intergenic | 50.0% | |
| CGTATCGCTGGAAAAGCGAA+AGG | - | tig0022279:8512-8531 | Msa1398700:CDS | 50.0% | |
| !! | TGGATTGGCAATTCTTCGCG+GGG | + | tig0022279:8773-8792 | None:intergenic | 50.0% |
| GATTGGCAATTCTTCGCGGG+GGG | + | tig0022279:8771-8790 | None:intergenic | 55.0% | |
| ! | GGATTGGCAATTCTTCGCGG+GGG | + | tig0022279:8772-8791 | None:intergenic | 55.0% |
| CGTCGTCTGGGGGCTTTACC+AGG | - | tig0022279:8341-8360 | Msa1398700:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022279 | gene | 8305 | 8910 | 8305 | ID=Msa1398700;Name=Msa1398700 |
| tig0022279 | mRNA | 8305 | 8910 | 8305 | ID=Msa1398700-mRNA-1;Parent=Msa1398700;Name=Msa1398700-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|201 |
| tig0022279 | exon | 8305 | 8910 | 8305 | ID=Msa1398700-mRNA-1:exon:16775;Parent=Msa1398700-mRNA-1 |
| tig0022279 | CDS | 8305 | 8910 | 8305 | ID=Msa1398700-mRNA-1:cds;Parent=Msa1398700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
