Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368300 | YP_009141600.1 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 3.55e-143 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368300 | sp|Q9BBT5|RR4_LOTJA | 95.522 | 201 | 9 | 0 | 1 | 201 | 1 | 201 | 8.95e-140 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368300 | A0A0F6NLD0 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 1.70e-143 | 407 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095150 | Msa1368300 | 0.813090 | 3.052688e-51 | -8.615850e-47 |
| Msa0095170 | Msa1368300 | 0.824218 | 9.092885e-54 | -8.615850e-47 |
| Msa0095190 | Msa1368300 | 0.836828 | 7.442416e-57 | -8.615850e-47 |
| Msa0095210 | Msa1368300 | 0.850168 | 2.021844e-60 | -8.615850e-47 |
| Msa0095290 | Msa1368300 | 0.835530 | 1.590484e-56 | -8.615850e-47 |
| Msa1354320 | Msa1368300 | 0.831994 | 1.217346e-55 | -8.615850e-47 |
| Msa1354330 | Msa1368300 | 0.808722 | 2.693174e-50 | -8.615850e-47 |
| Msa1354340 | Msa1368300 | 0.809983 | 1.444907e-50 | -8.615850e-47 |
| Msa1354350 | Msa1368300 | 0.898118 | 7.253804e-77 | -8.615850e-47 |
| Msa1354380 | Msa1368300 | 0.901804 | 1.849895e-78 | -8.615850e-47 |
| Msa1354390 | Msa1368300 | 0.883264 | 5.200067e-71 | -8.615850e-47 |
| Msa1354860 | Msa1368300 | 0.801896 | 7.253747e-49 | -8.615850e-47 |
| Msa1354880 | Msa1368300 | 0.835560 | 1.562740e-56 | -8.615850e-47 |
| Msa1354900 | Msa1368300 | 0.867649 | 1.171697e-65 | -8.615850e-47 |
| Msa1354910 | Msa1368300 | 0.819432 | 1.165027e-52 | -8.615850e-47 |
| Msa1354920 | Msa1368300 | 0.818347 | 2.055728e-52 | -8.615850e-47 |
| Msa1354930 | Msa1368300 | 0.856025 | 4.251939e-62 | -8.615850e-47 |
| Msa1354950 | Msa1368300 | 0.877719 | 5.013361e-69 | -8.615850e-47 |
| Msa1355050 | Msa1368300 | 0.835350 | 1.766301e-56 | -8.615850e-47 |
| Msa1355070 | Msa1368300 | 0.859787 | 3.247067e-63 | -8.615850e-47 |
| Msa1355080 | Msa1368300 | 0.819873 | 9.241389e-53 | -8.615850e-47 |
| Msa1355090 | Msa1368300 | 0.823701 | 1.201889e-53 | -8.615850e-47 |
| Msa1355100 | Msa1368300 | 0.861241 | 1.178469e-63 | -8.615850e-47 |
| Msa1366000 | Msa1368300 | 0.818230 | 2.184638e-52 | -8.615850e-47 |
| Msa1366010 | Msa1368300 | 0.866456 | 2.813069e-65 | -8.615850e-47 |
| Msa1366040 | Msa1368300 | 0.812668 | 3.775931e-51 | -8.615850e-47 |
| Msa1366050 | Msa1368300 | 0.909517 | 5.216283e-82 | -8.615850e-47 |
| Msa1368270 | Msa1368300 | 0.888943 | 3.770246e-73 | -8.615850e-47 |
| Msa1368280 | Msa1368300 | 0.898980 | 3.114451e-77 | -8.615850e-47 |
| Msa1368290 | Msa1368300 | 0.893314 | 7.055573e-75 | -8.615850e-47 |
| Msa1368300 | Msa1368310 | 0.809444 | 1.886155e-50 | -8.615850e-47 |
| Msa1368300 | Msa1374610 | 0.802501 | 5.445171e-49 | -8.615850e-47 |
| Msa1368300 | Msa1380570 | 0.842808 | 2.062558e-58 | -8.615850e-47 |
| Msa1368300 | Msa1380590 | 0.850937 | 1.229356e-60 | -8.615850e-47 |
| Msa1368300 | Msa1380600 | 0.826766 | 2.265361e-54 | -8.615850e-47 |
| Msa1368300 | Msa1380610 | 0.828366 | 9.358362e-55 | -8.615850e-47 |
| Msa1368300 | Msa1380620 | 0.851663 | 7.661917e-61 | -8.615850e-47 |
| Msa1368300 | Msa1380640 | 0.878807 | 2.082737e-69 | -8.615850e-47 |
| Msa1368300 | Msa1380650 | 0.828451 | 8.926907e-55 | -8.615850e-47 |
| Msa1368300 | Msa1380690 | 0.816419 | 5.584453e-52 | -8.615850e-47 |
| Msa1368300 | Msa1380710 | 0.880420 | 5.572151e-70 | -8.615850e-47 |
| Msa1368300 | Msa1385370 | 0.833625 | 4.790663e-56 | -8.615850e-47 |
| Msa1368300 | Msa1385380 | 0.817736 | 2.824767e-52 | -8.615850e-47 |
| Msa1368300 | Msa1394030 | 0.811786 | 5.880611e-51 | -8.615850e-47 |
| Msa1368300 | Msa1394040 | 0.840785 | 7.053136e-58 | -8.615850e-47 |
| Msa1368300 | Msa1394060 | 0.859438 | 4.136428e-63 | -8.615850e-47 |
| Msa1368300 | Msa1394130 | 0.841765 | 3.895810e-58 | -8.615850e-47 |
| Msa1368300 | Msa1394150 | 0.836335 | 9.940413e-57 | -8.615850e-47 |
| Msa1368300 | Msa1394160 | 0.832412 | 9.594015e-56 | -8.615850e-47 |
| Msa1368300 | Msa1394170 | 0.800551 | 1.366545e-48 | -8.615850e-47 |
| Msa1368300 | Msa1394210 | 0.822861 | 1.888463e-53 | -8.615850e-47 |
| Msa1368300 | Msa1394220 | 0.832364 | 9.862107e-56 | -8.615850e-47 |
| Msa1368300 | Msa1394230 | 0.862584 | 4.568306e-64 | -8.615850e-47 |
| Msa1368300 | Msa1394250 | 0.838543 | 2.702425e-57 | -8.615850e-47 |
| Msa1368300 | Msa1398700 | 0.848691 | 5.217513e-60 | -8.615850e-47 |
| Msa1368300 | Msa1398710 | 0.817795 | 2.739253e-52 | -8.615850e-47 |
| Msa1368300 | Msa1398720 | 0.891287 | 4.559915e-74 | -8.615850e-47 |
| Msa1368300 | Msa1400330 | 0.814673 | 1.366706e-51 | -8.615850e-47 |
| Msa0139800 | Msa1368300 | 0.824422 | 8.143078e-54 | -8.615850e-47 |
| Msa0139810 | Msa1368300 | 0.831086 | 2.037280e-55 | -8.615850e-47 |
| Msa0173880 | Msa1368300 | 0.823466 | 1.364036e-53 | -8.615850e-47 |
| Msa0202640 | Msa1368300 | 0.830883 | 2.284783e-55 | -8.615850e-47 |
| Msa0221840 | Msa1368300 | 0.818614 | 1.787949e-52 | -8.615850e-47 |
| Msa1267800 | Msa1368300 | 0.806044 | 9.956963e-50 | -8.615850e-47 |
| Msa1269400 | Msa1368300 | 0.850314 | 1.839262e-60 | -8.615850e-47 |
| Msa1269410 | Msa1368300 | 0.808770 | 2.630349e-50 | -8.615850e-47 |
| Msa1269420 | Msa1368300 | 0.869309 | 3.411299e-66 | -8.615850e-47 |
| Msa1305090 | Msa1368300 | 0.821752 | 3.415873e-53 | -8.615850e-47 |
| Msa0370210 | Msa1368300 | 0.815749 | 7.883564e-52 | -8.615850e-47 |
| Msa0398630 | Msa1368300 | 0.825818 | 3.808391e-54 | -8.615850e-47 |
| Msa0449920 | Msa1368300 | 0.820332 | 7.253177e-53 | -8.615850e-47 |
| Msa0983700 | Msa1368300 | 0.820423 | 6.914639e-53 | -8.615850e-47 |
| Msa0983720 | Msa1368300 | 0.865883 | 4.273153e-65 | -8.615850e-47 |
| Msa1064410 | Msa1368300 | 0.802438 | 5.611408e-49 | -8.615850e-47 |
| Msa1084630 | Msa1368300 | 0.812125 | 4.962281e-51 | -8.615850e-47 |
| Msa1086050 | Msa1368300 | 0.840273 | 9.603513e-58 | -8.615850e-47 |
| Msa1086070 | Msa1368300 | 0.860259 | 2.339077e-63 | -8.615850e-47 |
| Msa1086080 | Msa1368300 | 0.811822 | 5.776229e-51 | -8.615850e-47 |
| Msa1086090 | Msa1368300 | 0.814337 | 1.621775e-51 | -8.615850e-47 |
| Msa1086100 | Msa1368300 | 0.855872 | 4.714192e-62 | -8.615850e-47 |
| Msa1086140 | Msa1368300 | 0.852505 | 4.417738e-61 | -8.615850e-47 |
| Msa1086150 | Msa1368300 | 0.850757 | 1.380969e-60 | -8.615850e-47 |
| Msa1086180 | Msa1368300 | 0.858223 | 9.544058e-63 | -8.615850e-47 |
| Msa1086190 | Msa1368300 | 0.814142 | 1.790630e-51 | -8.615850e-47 |
| Msa1086200 | Msa1368300 | 0.814571 | 1.439407e-51 | -8.615850e-47 |
| Msa1086210 | Msa1368300 | 0.848861 | 4.679709e-60 | -8.615850e-47 |
| Msa1086250 | Msa1368300 | 0.838235 | 3.244868e-57 | -8.615850e-47 |
| Msa1086260 | Msa1368300 | 0.801889 | 7.276530e-49 | -8.615850e-47 |
| Msa1086270 | Msa1368300 | 0.829472 | 5.051803e-55 | -8.615850e-47 |
| Msa1086280 | Msa1368300 | 0.858476 | 8.026893e-63 | -8.615850e-47 |
| Msa1086300 | Msa1368300 | 0.836060 | 1.167512e-56 | -8.615850e-47 |
| Msa1086360 | Msa1368300 | 0.832665 | 8.304245e-56 | -8.615850e-47 |
| Msa1086380 | Msa1368300 | 0.861966 | 7.074192e-64 | -8.615850e-47 |
| Msa1086430 | Msa1368300 | 0.826734 | 2.305906e-54 | -8.615850e-47 |
| Msa1086450 | Msa1368300 | 0.868972 | 4.387808e-66 | -8.615850e-47 |
| Msa1086470 | Msa1368300 | 0.860919 | 1.475885e-63 | -8.615850e-47 |
| Msa1086660 | Msa1368300 | 0.851254 | 1.000246e-60 | -8.615850e-47 |
| Msa1086860 | Msa1368300 | 0.842777 | 2.102295e-58 | -8.615850e-47 |
| Msa1086880 | Msa1368300 | 0.861816 | 7.865615e-64 | -8.615850e-47 |
| Msa1086890 | Msa1368300 | 0.813903 | 2.022243e-51 | -8.615850e-47 |
| Msa1086900 | Msa1368300 | 0.820530 | 6.534747e-53 | -8.615850e-47 |
| Msa1086910 | Msa1368300 | 0.865636 | 5.114870e-65 | -8.615850e-47 |
| Msa1091700 | Msa1368300 | 0.809639 | 1.712746e-50 | -8.615850e-47 |
| Msa0268170 | Msa1368300 | 0.852917 | 3.370176e-61 | -8.615850e-47 |
| Msa0268190 | Msa1368300 | 0.849513 | 3.080916e-60 | -8.615850e-47 |
| Msa0268370 | Msa1368300 | 0.839341 | 1.678988e-57 | -8.615850e-47 |
| Msa0268390 | Msa1368300 | 0.864381 | 1.267141e-64 | -8.615850e-47 |
| Msa0268400 | Msa1368300 | 0.832928 | 7.144227e-56 | -8.615850e-47 |
| Msa0268410 | Msa1368300 | 0.857694 | 1.370402e-62 | -8.615850e-47 |
| Msa0268430 | Msa1368300 | 0.848462 | 6.037279e-60 | -8.615850e-47 |
| Msa0268530 | Msa1368300 | 0.840563 | 8.062510e-58 | -8.615850e-47 |
| Msa0268550 | Msa1368300 | 0.857081 | 2.080451e-62 | -8.615850e-47 |
| Msa0268560 | Msa1368300 | 0.823427 | 1.393582e-53 | -8.615850e-47 |
| Msa0268570 | Msa1368300 | 0.816244 | 6.110650e-52 | -8.615850e-47 |
| Msa0268580 | Msa1368300 | 0.854990 | 8.517910e-62 | -8.615850e-47 |
| Msa0268630 | Msa1368300 | 0.837118 | 6.277432e-57 | -8.615850e-47 |
| Msa0268640 | Msa1368300 | 0.839271 | 1.751093e-57 | -8.615850e-47 |
| Msa0268720 | Msa1368300 | 0.853449 | 2.371609e-61 | -8.615850e-47 |
| Msa0268740 | Msa1368300 | 0.846292 | 2.380458e-59 | -8.615850e-47 |
| Msa0268750 | Msa1368300 | 0.826702 | 2.347294e-54 | -8.615850e-47 |
| Msa0268760 | Msa1368300 | 0.817108 | 3.913375e-52 | -8.615850e-47 |
| Msa0268830 | Msa1368300 | 0.837461 | 5.128808e-57 | -8.615850e-47 |
| Msa0268840 | Msa1368300 | 0.860639 | 1.795462e-63 | -8.615850e-47 |
| Msa0268860 | Msa1368300 | 0.840182 | 1.014312e-57 | -8.615850e-47 |
| Msa0268920 | Msa1368300 | 0.845113 | 4.973059e-59 | -8.615850e-47 |
| Msa0268940 | Msa1368300 | 0.863585 | 2.240970e-64 | -8.615850e-47 |
| Msa0268950 | Msa1368300 | 0.826602 | 2.479472e-54 | -8.615850e-47 |
| Msa0268960 | Msa1368300 | 0.829666 | 4.530835e-55 | -8.615850e-47 |
| Msa0269040 | Msa1368300 | 0.838428 | 2.892511e-57 | -8.615850e-47 |
| Msa0269050 | Msa1368300 | 0.857345 | 1.738738e-62 | -8.615850e-47 |
| Msa0269070 | Msa1368300 | 0.844572 | 6.956136e-59 | -8.615850e-47 |
| Msa0344180 | Msa1368300 | 0.834787 | 2.449138e-56 | -8.615850e-47 |
| Msa0344190 | Msa1368300 | 0.849425 | 3.259872e-60 | -8.615850e-47 |
| Msa0344210 | Msa1368300 | 0.812154 | 4.890833e-51 | -8.615850e-47 |
| Msa0344280 | Msa1368300 | 0.832985 | 6.914321e-56 | -8.615850e-47 |
| Msa0344300 | Msa1368300 | 0.849320 | 3.487440e-60 | -8.615850e-47 |
| Msa0344310 | Msa1368300 | 0.844670 | 6.549527e-59 | -8.615850e-47 |
| Msa0344330 | Msa1368300 | 0.849865 | 2.457265e-60 | -8.615850e-47 |
| Msa1143120 | Msa1368300 | 0.845433 | 4.074823e-59 | -8.615850e-47 |
| Msa1143130 | Msa1368300 | 0.857835 | 1.245163e-62 | -8.615850e-47 |
| Msa1143160 | Msa1368300 | 0.833768 | 4.411529e-56 | -8.615850e-47 |
| Msa1143170 | Msa1368300 | 0.807115 | 5.916327e-50 | -8.615850e-47 |
| Msa1143180 | Msa1368300 | 0.841064 | 5.960070e-58 | -8.615850e-47 |
| Msa0483990 | Msa1368300 | 0.810162 | 1.322019e-50 | -8.615850e-47 |
| Msa0484040 | Msa1368300 | 0.803120 | 4.056867e-49 | -8.615850e-47 |
| Msa0495270 | Msa1368300 | 0.821583 | 3.737805e-53 | -8.615850e-47 |
| Msa0574230 | Msa1368300 | 0.803826 | 2.896264e-49 | -8.615850e-47 |
| Msa0576510 | Msa1368300 | 0.804906 | 1.724850e-49 | -8.615850e-47 |
| Msa0582510 | Msa1368300 | 0.845420 | 4.106804e-59 | -8.615850e-47 |
| Msa0582520 | Msa1368300 | 0.853218 | 2.764009e-61 | -8.615850e-47 |
| Msa0582540 | Msa1368300 | 0.832882 | 7.336477e-56 | -8.615850e-47 |
| Msa0582610 | Msa1368300 | 0.837818 | 4.152750e-57 | -8.615850e-47 |
| Msa0582630 | Msa1368300 | 0.847059 | 1.468889e-59 | -8.615850e-47 |
| Msa0582640 | Msa1368300 | 0.802431 | 5.629118e-49 | -8.615850e-47 |
| Msa0582650 | Msa1368300 | 0.829974 | 3.811349e-55 | -8.615850e-47 |
| Msa0582660 | Msa1368300 | 0.857251 | 1.854242e-62 | -8.615850e-47 |
| Msa0582690 | Msa1368300 | 0.857856 | 1.226972e-62 | -8.615850e-47 |
| Msa0582700 | Msa1368300 | 0.858880 | 6.080349e-63 | -8.615850e-47 |
| Msa0582720 | Msa1368300 | 0.847522 | 1.096726e-59 | -8.615850e-47 |
| Msa0582730 | Msa1368300 | 0.809189 | 2.139696e-50 | -8.615850e-47 |
| Msa0582750 | Msa1368300 | 0.865599 | 5.254043e-65 | -8.615850e-47 |
| Msa0582760 | Msa1368300 | 0.827429 | 1.572043e-54 | -8.615850e-47 |
| Msa0582770 | Msa1368300 | 0.829911 | 3.950157e-55 | -8.615850e-47 |
| Msa0582780 | Msa1368300 | 0.856368 | 3.373675e-62 | -8.615850e-47 |
| Msa0582810 | Msa1368300 | 0.841583 | 4.351254e-58 | -8.615850e-47 |
| Msa0582820 | Msa1368300 | 0.854623 | 1.087846e-61 | -8.615850e-47 |
| Msa0582840 | Msa1368300 | 0.827766 | 1.304673e-54 | -8.615850e-47 |
| Msa0582890 | Msa1368300 | 0.839145 | 1.887663e-57 | -8.615850e-47 |
| Msa0582910 | Msa1368300 | 0.855780 | 5.014496e-62 | -8.615850e-47 |
| Msa0582920 | Msa1368300 | 0.822178 | 2.721830e-53 | -8.615850e-47 |
| Msa0582930 | Msa1368300 | 0.844548 | 7.061336e-59 | -8.615850e-47 |
| Msa0591380 | Msa1368300 | 0.820259 | 7.537927e-53 | -8.615850e-47 |
| Msa0867640 | Msa1368300 | 0.852911 | 3.382071e-61 | -8.615850e-47 |
| Msa0867650 | Msa1368300 | 0.844190 | 8.813047e-59 | -8.615850e-47 |
| Msa0880370 | Msa1368300 | 0.800287 | 1.547077e-48 | -8.615850e-47 |
| Msa0883880 | Msa1368300 | 0.814194 | 1.744159e-51 | -8.615850e-47 |
| Msa0908480 | Msa1368300 | 0.800141 | 1.656083e-48 | -8.615850e-47 |
| Msa0924850 | Msa1368300 | 0.825295 | 5.066107e-54 | -8.615850e-47 |
| Msa0924870 | Msa1368300 | 0.833821 | 4.278903e-56 | -8.615850e-47 |
| Msa0924880 | Msa1368300 | 0.829607 | 4.683959e-55 | -8.615850e-47 |
| Msa0924990 | Msa1368300 | 0.846467 | 2.133080e-59 | -8.615850e-47 |
| Msa0925040 | Msa1368300 | 0.849470 | 3.168576e-60 | -8.615850e-47 |
| Msa0931070 | Msa1368300 | 0.840046 | 1.100794e-57 | -8.615850e-47 |
| Msa0931080 | Msa1368300 | 0.856782 | 2.549362e-62 | -8.615850e-47 |
| Msa0931100 | Msa1368300 | 0.841541 | 4.462859e-58 | -8.615850e-47 |
| Msa0931110 | Msa1368300 | 0.822284 | 2.572061e-53 | -8.615850e-47 |
| Msa0931130 | Msa1368300 | 0.849300 | 3.532116e-60 | -8.615850e-47 |
| Msa0931140 | Msa1368300 | 0.854691 | 1.039758e-61 | -8.615850e-47 |
| Msa0931160 | Msa1368300 | 0.841595 | 4.318914e-58 | -8.615850e-47 |
| Msa0931190 | Msa1368300 | 0.855514 | 5.995031e-62 | -8.615850e-47 |
| Msa0931210 | Msa1368300 | 0.840078 | 1.079401e-57 | -8.615850e-47 |
| Msa0931220 | Msa1368300 | 0.810211 | 1.290227e-50 | -8.615850e-47 |
| Msa0931230 | Msa1368300 | 0.813366 | 2.654155e-51 | -8.615850e-47 |
| Msa0931240 | Msa1368300 | 0.856947 | 2.278801e-62 | -8.615850e-47 |
| Msa0931260 | Msa1368300 | 0.835955 | 1.241156e-56 | -8.615850e-47 |
| Msa0931270 | Msa1368300 | 0.829418 | 5.204304e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368300 | MtrunA17_Chr7g0229301 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1368300 | MtrunA17_Chr6g0454441 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1368300 | MtrunA17_Chr4g0016451 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1368300 | MtrunA17_Chr6g0466281 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1368300 | MtrunA17_CPg0493311 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1368300 | MtrunA17_Chr7g0229661 | 84.080 | 201 | 13 | 1 | 1 | 201 | 1 | 182 | 1.89e-115 | 327 |
| Msa1368300 | MtrunA17_Chr4g0015291 | 97.436 | 156 | 4 | 0 | 1 | 156 | 1 | 156 | 3.32e-108 | 307 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1368300 | ATCG00380.1 | 88.060 | 201 | 24 | 0 | 1 | 201 | 1 | 201 | 2.12e-126 | 355 |
Find 33 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATAATAGATAGTAAA+TGG | 0.189787 | tig0018631:-162753 | Msa1368300:CDS |
| GATTGACTAATCCTTTATAT+TGG | 0.284280 | tig0018631:+162773 | None:intergenic |
| CTTGATCCATTCCAATATAA+AGG | 0.291752 | tig0018631:-162784 | Msa1368300:CDS |
| CTTAAATACGTTCGTATCGC+TGG | 0.342652 | tig0018631:-163084 | Msa1368300:CDS |
| ACAATTACTTGAAATGCGTT+TGG | 0.359489 | tig0018631:-163028 | Msa1368300:CDS |
| TTTGAAAATTAATGAATTGC+TGG | 0.365999 | tig0018631:-162725 | Msa1368300:CDS |
| ATGGATTGGCAATTCTTCGC+GGG | 0.450528 | tig0018631:+162813 | None:intergenic |
| TACCAGGACTAACTAGTAAA+CGG | 0.463029 | tig0018631:-163227 | Msa1368300:CDS |
| TGAGGTTTGCAACGATAACT+TGG | 0.468099 | tig0018631:+162904 | None:intergenic |
| ACTAATCCTTTATATTGGAA+TGG | 0.475526 | tig0018631:+162778 | None:intergenic |
| GTCTGTGGTTAACTAATTGA+CGG | 0.477609 | tig0018631:+162959 | None:intergenic |
| TCAAATAATAGATAGTAAAT+GGG | 0.487910 | tig0018631:-162752 | Msa1368300:CDS |
| ATAATAGATAGTAAATGGGT+TGG | 0.504615 | tig0018631:-162748 | Msa1368300:CDS |
| CTAAGTTCGCTTCCAACTGT+AGG | 0.508663 | tig0018631:+163204 | None:intergenic |
| GGATCAAGAGTCAAATGGAT+TGG | 0.511159 | tig0018631:+162799 | None:intergenic |
| GGAAAAGCGAAAGGTTCAAC+CGG | 0.516182 | tig0018631:-163063 | Msa1368300:CDS |
| TCTGTGGTTAACTAATTGAC+GGG | 0.521261 | tig0018631:+162960 | None:intergenic |
| GGCCGTTTACTAGTTAGTCC+TGG | 0.527000 | tig0018631:+163225 | None:intergenic |
| AATGGATTGGCAATTCTTCG+CGG | 0.545268 | tig0018631:+162812 | None:intergenic |
| TCAAGATATTATTACAGCGA+AGG | 0.559737 | tig0018631:-162884 | Msa1368300:CDS |
| TTCGCTGTAATAATATCTTG+AGG | 0.560954 | tig0018631:+162886 | None:intergenic |
| TAATTGTAGTAAAACTTGAC+CGG | 0.568250 | tig0018631:+163044 | None:intergenic |
| ACTAGTAAACGGCCTACAGT+TGG | 0.568372 | tig0018631:-163216 | Msa1368300:CDS |
| CAAGATATTATTACAGCGAA+GGG | 0.569002 | tig0018631:-162883 | Msa1368300:CDS |
| TTAACTAATTGACGGGCTTG+AGG | 0.581554 | tig0018631:+162967 | None:intergenic |
| GGAATGGATCAAGAGTCAAA+TGG | 0.582974 | tig0018631:+162794 | None:intergenic |
| GATTGGCAATTCTTCGCGGG+GGG | 0.584547 | tig0018631:+162816 | None:intergenic |
| TGGATTGGCAATTCTTCGCG+GGG | 0.610754 | tig0018631:+162814 | None:intergenic |
| TGTTTATGTCACGTTACAGA+GGG | 0.632465 | tig0018631:-163284 | None:intergenic |
| GTGTTTATGTCACGTTACAG+AGG | 0.633128 | tig0018631:-163285 | None:intergenic |
| CGTATCGCTGGAAAAGCGAA+AGG | 0.633501 | tig0018631:-163072 | Msa1368300:CDS |
| CATTAACTAAAACATGTCTG+TGG | 0.663264 | tig0018631:+162944 | None:intergenic |
| GGATTGGCAATTCTTCGCGG+GGG | 0.681198 | tig0018631:+162815 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAATAATAGATAGTAAA+TGG | - | tig0018631:163222-163241 | Msa1368300:CDS | 15.0% |
| !! | TCAAATAATAGATAGTAAAT+GGG | - | tig0018631:163223-163242 | Msa1368300:CDS | 15.0% |
| !! | TTTGAAAATTAATGAATTGC+TGG | - | tig0018631:163250-163269 | Msa1368300:CDS | 20.0% |
| !! | CAAAAATTGCGTTTTCATTA+TGG | - | tig0018631:162849-162868 | Msa1368300:CDS | 25.0% |
| ! | TAATTGTAGTAAAACTTGAC+CGG | + | tig0018631:162934-162953 | None:intergenic | 25.0% |
| !!! | GATAACATACTTTTTCGATT+GGG | - | tig0018631:162969-162988 | Msa1368300:CDS | 25.0% |
| ! | ACTAATCCTTTATATTGGAA+TGG | + | tig0018631:163200-163219 | None:intergenic | 25.0% |
| ! | GATTGACTAATCCTTTATAT+TGG | + | tig0018631:163205-163224 | None:intergenic | 25.0% |
| ! | ATAATAGATAGTAAATGGGT+TGG | - | tig0018631:163227-163246 | Msa1368300:CDS | 25.0% |
| TTTCAAAAAAATACGTCGTC+TGG | - | tig0018631:162719-162738 | Msa1368300:CDS | 30.0% | |
| TTCAAAAAAATACGTCGTCT+GGG | - | tig0018631:162720-162739 | Msa1368300:CDS | 30.0% | |
| ACAATTACTTGAAATGCGTT+TGG | - | tig0018631:162947-162966 | Msa1368300:CDS | 30.0% | |
| !!! | GGATAACATACTTTTTCGAT+TGG | - | tig0018631:162968-162987 | Msa1368300:CDS | 30.0% |
| CATTAACTAAAACATGTCTG+TGG | + | tig0018631:163034-163053 | None:intergenic | 30.0% | |
| !!! | CACAGACATGTTTTAGTTAA+TGG | - | tig0018631:163032-163051 | Msa1368300:CDS | 30.0% |
| TTCGCTGTAATAATATCTTG+AGG | + | tig0018631:163092-163111 | None:intergenic | 30.0% | |
| TCAAGATATTATTACAGCGA+AGG | - | tig0018631:163091-163110 | Msa1368300:CDS | 30.0% | |
| CAAGATATTATTACAGCGAA+GGG | - | tig0018631:163092-163111 | Msa1368300:CDS | 30.0% | |
| CTTGATCCATTCCAATATAA+AGG | - | tig0018631:163191-163210 | Msa1368300:CDS | 30.0% | |
| !!! | CGACGTATTTTTTTGAAACG+AGG | + | tig0018631:162717-162736 | None:intergenic | 35.0% |
| TCAAAAAAATACGTCGTCTG+GGG | - | tig0018631:162721-162740 | Msa1368300:CDS | 35.0% | |
| TACCAGGACTAACTAGTAAA+CGG | - | tig0018631:162748-162767 | Msa1368300:CDS | 35.0% | |
| !!! | CATACTTTTTCGATTGGGTA+TGG | - | tig0018631:162974-162993 | Msa1368300:CDS | 35.0% |
| TCTGTGGTTAACTAATTGAC+GGG | + | tig0018631:163018-163037 | None:intergenic | 35.0% | |
| GTCTGTGGTTAACTAATTGA+CGG | + | tig0018631:163019-163038 | None:intergenic | 35.0% | |
| CAAAAAAATACGTCGTCTGG+GGG | - | tig0018631:162722-162741 | Msa1368300:CDS | 40.0% | |
| !!! | ATTTTTTACTCGAGCGCGAT+TGG | + | tig0018631:162800-162819 | None:intergenic | 40.0% |
| CTTAAATACGTTCGTATCGC+TGG | - | tig0018631:162891-162910 | Msa1368300:CDS | 40.0% | |
| !! | TTAACTAATTGACGGGCTTG+AGG | + | tig0018631:163011-163030 | None:intergenic | 40.0% |
| TGAGGTTTGCAACGATAACT+TGG | + | tig0018631:163074-163093 | None:intergenic | 40.0% | |
| !! | AATGGATTGGCAATTCTTCG+CGG | + | tig0018631:163166-163185 | None:intergenic | 40.0% |
| GGATCAAGAGTCAAATGGAT+TGG | + | tig0018631:163179-163198 | None:intergenic | 40.0% | |
| GGAATGGATCAAGAGTCAAA+TGG | + | tig0018631:163184-163203 | None:intergenic | 40.0% | |
| ACTAGTAAACGGCCTACAGT+TGG | - | tig0018631:162759-162778 | Msa1368300:CDS | 45.0% | |
| CTAAGTTCGCTTCCAACTGT+AGG | + | tig0018631:162774-162793 | None:intergenic | 45.0% | |
| GGAAAAGCGAAAGGTTCAAC+CGG | - | tig0018631:162912-162931 | Msa1368300:CDS | 45.0% | |
| !! | ATGGATTGGCAATTCTTCGC+GGG | + | tig0018631:163165-163184 | None:intergenic | 45.0% |
| GGCCGTTTACTAGTTAGTCC+TGG | + | tig0018631:162753-162772 | None:intergenic | 50.0% | |
| CGTATCGCTGGAAAAGCGAA+AGG | - | tig0018631:162903-162922 | Msa1368300:CDS | 50.0% | |
| !! | TGGATTGGCAATTCTTCGCG+GGG | + | tig0018631:163164-163183 | None:intergenic | 50.0% |
| GATTGGCAATTCTTCGCGGG+GGG | + | tig0018631:163162-163181 | None:intergenic | 55.0% | |
| ! | GGATTGGCAATTCTTCGCGG+GGG | + | tig0018631:163163-163182 | None:intergenic | 55.0% |
| CGTCGTCTGGGGGCTTTACC+AGG | - | tig0018631:162732-162751 | Msa1368300:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018631 | gene | 162696 | 163301 | 162696 | ID=Msa1368300;Name=Msa1368300 |
| tig0018631 | mRNA | 162696 | 163301 | 162696 | ID=Msa1368300-mRNA-1;Parent=Msa1368300;Name=Msa1368300-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|201 |
| tig0018631 | exon | 162696 | 163301 | 162696 | ID=Msa1368300-mRNA-1:exon:402;Parent=Msa1368300-mRNA-1 |
| tig0018631 | CDS | 162696 | 163301 | 162696 | ID=Msa1368300-mRNA-1:cds;Parent=Msa1368300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
