Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354390 | YP_009141600.1 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 3.55e-143 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354390 | sp|Q9BBT5|RR4_LOTJA | 95.522 | 201 | 9 | 0 | 1 | 201 | 1 | 201 | 8.95e-140 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354390 | A0A0F6NLD0 | 100.000 | 201 | 0 | 0 | 1 | 201 | 1 | 201 | 1.70e-143 | 407 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095150 | Msa1354390 | 0.813493 | 2.489731e-51 | -8.615850e-47 |
| Msa0095170 | Msa1354390 | 0.824201 | 9.178682e-54 | -8.615850e-47 |
| Msa0095190 | Msa1354390 | 0.822062 | 2.896389e-53 | -8.615850e-47 |
| Msa0095210 | Msa1354390 | 0.837969 | 3.798018e-57 | -8.615850e-47 |
| Msa0095290 | Msa1354390 | 0.815040 | 1.133292e-51 | -8.615850e-47 |
| Msa1354320 | Msa1354390 | 0.809082 | 2.256222e-50 | -8.615850e-47 |
| Msa1354330 | Msa1354390 | 0.862035 | 6.739668e-64 | -8.615850e-47 |
| Msa1354340 | Msa1354390 | 0.814363 | 1.600537e-51 | -8.615850e-47 |
| Msa1354350 | Msa1354390 | 0.932287 | 1.067301e-94 | -8.615850e-47 |
| Msa1354380 | Msa1354390 | 0.902142 | 1.310684e-78 | -8.615850e-47 |
| Msa1354390 | Msa1354880 | 0.803711 | 3.060277e-49 | -8.615850e-47 |
| Msa1354390 | Msa1354900 | 0.838162 | 3.386625e-57 | -8.615850e-47 |
| Msa1354390 | Msa1354910 | 0.835077 | 2.069998e-56 | -8.615850e-47 |
| Msa1354390 | Msa1354920 | 0.805970 | 1.032088e-49 | -8.615850e-47 |
| Msa1354390 | Msa1354930 | 0.840419 | 8.795324e-58 | -8.615850e-47 |
| Msa1354390 | Msa1354950 | 0.901173 | 3.500540e-78 | -8.615850e-47 |
| Msa1354390 | Msa1355050 | 0.814862 | 1.241275e-51 | -8.615850e-47 |
| Msa1354390 | Msa1355070 | 0.841297 | 5.174787e-58 | -8.615850e-47 |
| Msa1354390 | Msa1355080 | 0.822047 | 2.919011e-53 | -8.615850e-47 |
| Msa1354390 | Msa1355090 | 0.815523 | 8.851090e-52 | -8.615850e-47 |
| Msa1354390 | Msa1355100 | 0.843769 | 1.142611e-58 | -8.615850e-47 |
| Msa1354390 | Msa1366000 | 0.842706 | 2.194793e-58 | -8.615850e-47 |
| Msa1354390 | Msa1366010 | 0.883877 | 3.092175e-71 | -8.615850e-47 |
| Msa1354390 | Msa1366040 | 0.841290 | 5.196532e-58 | -8.615850e-47 |
| Msa1354390 | Msa1366050 | 0.907497 | 4.755211e-81 | -8.615850e-47 |
| Msa1354390 | Msa1368270 | 0.897758 | 1.030895e-76 | -8.615850e-47 |
| Msa1354390 | Msa1368280 | 0.858073 | 1.058336e-62 | -8.615850e-47 |
| Msa1354390 | Msa1368290 | 0.891637 | 3.311136e-74 | -8.615850e-47 |
| Msa1354390 | Msa1368300 | 0.883264 | 5.200067e-71 | -8.615850e-47 |
| Msa1354390 | Msa1368310 | 0.810063 | 1.388503e-50 | -8.615850e-47 |
| Msa1354390 | Msa1380570 | 0.815092 | 1.103611e-51 | -8.615850e-47 |
| Msa1354390 | Msa1380590 | 0.834535 | 2.833094e-56 | -8.615850e-47 |
| Msa1354390 | Msa1380600 | 0.831489 | 1.621442e-55 | -8.615850e-47 |
| Msa1354390 | Msa1380610 | 0.813008 | 3.181142e-51 | -8.615850e-47 |
| Msa1354390 | Msa1380620 | 0.829993 | 3.771657e-55 | -8.615850e-47 |
| Msa1354390 | Msa1380640 | 0.910570 | 1.616492e-82 | -8.615850e-47 |
| Msa1354390 | Msa1380650 | 0.834203 | 3.433708e-56 | -8.615850e-47 |
| Msa1354390 | Msa1380710 | 0.868828 | 4.883657e-66 | -8.615850e-47 |
| Msa1354390 | Msa1385370 | 0.842461 | 2.549659e-58 | -8.615850e-47 |
| Msa1354390 | Msa1385380 | 0.805512 | 1.287930e-49 | -8.615850e-47 |
| Msa1354390 | Msa1389990 | 0.800018 | 1.754231e-48 | -8.615850e-47 |
| Msa1354390 | Msa1391160 | 0.804902 | 1.728788e-49 | -8.615850e-47 |
| Msa1354390 | Msa1394030 | 0.819173 | 1.334697e-52 | -8.615850e-47 |
| Msa1354390 | Msa1394040 | 0.840702 | 7.418084e-58 | -8.615850e-47 |
| Msa1354390 | Msa1394060 | 0.837855 | 4.062497e-57 | -8.615850e-47 |
| Msa1354390 | Msa1394130 | 0.814789 | 1.288150e-51 | -8.615850e-47 |
| Msa1354390 | Msa1394150 | 0.821894 | 3.168167e-53 | -8.615850e-47 |
| Msa1354390 | Msa1394160 | 0.821999 | 2.995496e-53 | -8.615850e-47 |
| Msa1354390 | Msa1394210 | 0.829005 | 6.555971e-55 | -8.615850e-47 |
| Msa1354390 | Msa1394220 | 0.827918 | 1.199442e-54 | -8.615850e-47 |
| Msa1354390 | Msa1394230 | 0.853597 | 2.151580e-61 | -8.615850e-47 |
| Msa1354390 | Msa1394250 | 0.835925 | 1.263406e-56 | -8.615850e-47 |
| Msa1354390 | Msa1398700 | 0.865936 | 4.112754e-65 | -8.615850e-47 |
| Msa1354390 | Msa1398710 | 0.848388 | 6.326979e-60 | -8.615850e-47 |
| Msa1354390 | Msa1398720 | 0.870712 | 1.185726e-66 | -8.615850e-47 |
| Msa0139810 | Msa1354390 | 0.818923 | 1.520959e-52 | -8.615850e-47 |
| Msa0173880 | Msa1354390 | 0.814640 | 1.390254e-51 | -8.615850e-47 |
| Msa0202640 | Msa1354390 | 0.840089 | 1.072361e-57 | -8.615850e-47 |
| Msa1269400 | Msa1354390 | 0.861289 | 1.138675e-63 | -8.615850e-47 |
| Msa1269410 | Msa1354390 | 0.839754 | 1.311487e-57 | -8.615850e-47 |
| Msa1269420 | Msa1354390 | 0.875232 | 3.623825e-68 | -8.615850e-47 |
| Msa1305090 | Msa1354390 | 0.819478 | 1.137472e-52 | -8.615850e-47 |
| Msa0370210 | Msa1354390 | 0.828035 | 1.124254e-54 | -8.615850e-47 |
| Msa0983700 | Msa1354390 | 0.804048 | 2.603762e-49 | -8.615850e-47 |
| Msa0983720 | Msa1354390 | 0.856948 | 2.277828e-62 | -8.615850e-47 |
| Msa1086050 | Msa1354390 | 0.822007 | 2.982541e-53 | -8.615850e-47 |
| Msa1086070 | Msa1354390 | 0.836249 | 1.045420e-56 | -8.615850e-47 |
| Msa1086080 | Msa1354390 | 0.819389 | 1.191348e-52 | -8.615850e-47 |
| Msa1086090 | Msa1354390 | 0.806115 | 9.619839e-50 | -8.615850e-47 |
| Msa1086100 | Msa1354390 | 0.825659 | 4.154243e-54 | -8.615850e-47 |
| Msa1086140 | Msa1354390 | 0.843436 | 1.402881e-58 | -8.615850e-47 |
| Msa1086150 | Msa1354390 | 0.829076 | 6.300847e-55 | -8.615850e-47 |
| Msa1086180 | Msa1354390 | 0.846919 | 1.604998e-59 | -8.615850e-47 |
| Msa1086190 | Msa1354390 | 0.811419 | 7.067430e-51 | -8.615850e-47 |
| Msa1086200 | Msa1354390 | 0.813444 | 2.551826e-51 | -8.615850e-47 |
| Msa1086210 | Msa1354390 | 0.829538 | 4.867101e-55 | -8.615850e-47 |
| Msa1086250 | Msa1354390 | 0.819438 | 1.161199e-52 | -8.615850e-47 |
| Msa1086260 | Msa1354390 | 0.815777 | 7.768531e-52 | -8.615850e-47 |
| Msa1086270 | Msa1354390 | 0.824727 | 6.899308e-54 | -8.615850e-47 |
| Msa1086280 | Msa1354390 | 0.845899 | 3.044823e-59 | -8.615850e-47 |
| Msa1086300 | Msa1354390 | 0.804432 | 2.166819e-49 | -8.615850e-47 |
| Msa1086360 | Msa1354390 | 0.822719 | 2.037743e-53 | -8.615850e-47 |
| Msa1086380 | Msa1354390 | 0.849916 | 2.378303e-60 | -8.615850e-47 |
| Msa1086430 | Msa1354390 | 0.813026 | 3.152675e-51 | -8.615850e-47 |
| Msa1086450 | Msa1354390 | 0.847828 | 9.032674e-60 | -8.615850e-47 |
| Msa1086470 | Msa1354390 | 0.833412 | 5.412152e-56 | -8.615850e-47 |
| Msa1086660 | Msa1354390 | 0.815014 | 1.148672e-51 | -8.615850e-47 |
| Msa1086860 | Msa1354390 | 0.820314 | 7.322375e-53 | -8.615850e-47 |
| Msa1086880 | Msa1354390 | 0.832952 | 7.046171e-56 | -8.615850e-47 |
| Msa1086890 | Msa1354390 | 0.818783 | 1.636659e-52 | -8.615850e-47 |
| Msa1086900 | Msa1354390 | 0.806857 | 6.708865e-50 | -8.615850e-47 |
| Msa1086910 | Msa1354390 | 0.832029 | 1.193465e-55 | -8.615850e-47 |
| Msa1091700 | Msa1354390 | 0.805724 | 1.162485e-49 | -8.615850e-47 |
| Msa0268170 | Msa1354390 | 0.846053 | 2.765921e-59 | -8.615850e-47 |
| Msa0268190 | Msa1354390 | 0.828264 | 9.902839e-55 | -8.615850e-47 |
| Msa0268300 | Msa1354390 | 0.806588 | 7.647279e-50 | -8.615850e-47 |
| Msa0268370 | Msa1354390 | 0.822337 | 2.499898e-53 | -8.615850e-47 |
| Msa0268390 | Msa1354390 | 0.839398 | 1.622899e-57 | -8.615850e-47 |
| Msa0268400 | Msa1354390 | 0.846671 | 1.875881e-59 | -8.615850e-47 |
| Msa0268410 | Msa1354390 | 0.846362 | 2.278067e-59 | -8.615850e-47 |
| Msa0268430 | Msa1354390 | 0.824059 | 9.906327e-54 | -8.615850e-47 |
| Msa0268530 | Msa1354390 | 0.815989 | 6.967313e-52 | -8.615850e-47 |
| Msa0268550 | Msa1354390 | 0.857110 | 2.040631e-62 | -8.615850e-47 |
| Msa0268560 | Msa1354390 | 0.838417 | 2.912361e-57 | -8.615850e-47 |
| Msa0268570 | Msa1354390 | 0.805027 | 1.627394e-49 | -8.615850e-47 |
| Msa0268580 | Msa1354390 | 0.842044 | 3.288634e-58 | -8.615850e-47 |
| Msa0268610 | Msa1354390 | 0.806067 | 9.848955e-50 | -8.615850e-47 |
| Msa0268630 | Msa1354390 | 0.829415 | 5.214711e-55 | -8.615850e-47 |
| Msa0268640 | Msa1354390 | 0.839470 | 1.554476e-57 | -8.615850e-47 |
| Msa0268720 | Msa1354390 | 0.836869 | 7.266261e-57 | -8.615850e-47 |
| Msa0268740 | Msa1354390 | 0.834305 | 3.235829e-56 | -8.615850e-47 |
| Msa0268750 | Msa1354390 | 0.813560 | 2.405959e-51 | -8.615850e-47 |
| Msa0268760 | Msa1354390 | 0.806210 | 9.185917e-50 | -8.615850e-47 |
| Msa0268830 | Msa1354390 | 0.835753 | 1.396965e-56 | -8.615850e-47 |
| Msa0268840 | Msa1354390 | 0.828477 | 8.795673e-55 | -8.615850e-47 |
| Msa0268860 | Msa1354390 | 0.813571 | 2.393100e-51 | -8.615850e-47 |
| Msa0268920 | Msa1354390 | 0.828041 | 1.120547e-54 | -8.615850e-47 |
| Msa0268940 | Msa1354390 | 0.842560 | 2.400278e-58 | -8.615850e-47 |
| Msa0268950 | Msa1354390 | 0.821259 | 4.440744e-53 | -8.615850e-47 |
| Msa0268960 | Msa1354390 | 0.819847 | 9.367443e-53 | -8.615850e-47 |
| Msa0269040 | Msa1354390 | 0.834228 | 3.383679e-56 | -8.615850e-47 |
| Msa0269050 | Msa1354390 | 0.841563 | 4.405450e-58 | -8.615850e-47 |
| Msa0269070 | Msa1354390 | 0.830267 | 3.233107e-55 | -8.615850e-47 |
| Msa0344180 | Msa1354390 | 0.831692 | 1.445057e-55 | -8.615850e-47 |
| Msa0344190 | Msa1354390 | 0.849470 | 3.167494e-60 | -8.615850e-47 |
| Msa0344280 | Msa1354390 | 0.831403 | 1.702673e-55 | -8.615850e-47 |
| Msa0344300 | Msa1354390 | 0.846074 | 2.729003e-59 | -8.615850e-47 |
| Msa0344310 | Msa1354390 | 0.828221 | 1.014167e-54 | -8.615850e-47 |
| Msa0344330 | Msa1354390 | 0.863052 | 3.277660e-64 | -8.615850e-47 |
| Msa1143120 | Msa1354390 | 0.826543 | 2.560649e-54 | -8.615850e-47 |
| Msa1143130 | Msa1354390 | 0.844193 | 8.799952e-59 | -8.615850e-47 |
| Msa1143160 | Msa1354390 | 0.833633 | 4.766469e-56 | -8.615850e-47 |
| Msa1143180 | Msa1354390 | 0.823364 | 1.441158e-53 | -8.615850e-47 |
| Msa0483990 | Msa1354390 | 0.842664 | 2.252746e-58 | -8.615850e-47 |
| Msa0495270 | Msa1354390 | 0.803844 | 2.870771e-49 | -8.615850e-47 |
| Msa0582510 | Msa1354390 | 0.832611 | 8.564060e-56 | -8.615850e-47 |
| Msa0582520 | Msa1354390 | 0.840093 | 1.070184e-57 | -8.615850e-47 |
| Msa0582540 | Msa1354390 | 0.813398 | 2.611478e-51 | -8.615850e-47 |
| Msa0582610 | Msa1354390 | 0.819950 | 8.874837e-53 | -8.615850e-47 |
| Msa0582630 | Msa1354390 | 0.837559 | 4.840535e-57 | -8.615850e-47 |
| Msa0582640 | Msa1354390 | 0.816524 | 5.289861e-52 | -8.615850e-47 |
| Msa0582650 | Msa1354390 | 0.812927 | 3.314051e-51 | -8.615850e-47 |
| Msa0582660 | Msa1354390 | 0.829596 | 4.711966e-55 | -8.615850e-47 |
| Msa0582690 | Msa1354390 | 0.832066 | 1.168746e-55 | -8.615850e-47 |
| Msa0582700 | Msa1354390 | 0.849809 | 2.547468e-60 | -8.615850e-47 |
| Msa0582720 | Msa1354390 | 0.824520 | 7.721871e-54 | -8.615850e-47 |
| Msa0582750 | Msa1354390 | 0.847536 | 1.086531e-59 | -8.615850e-47 |
| Msa0582760 | Msa1354390 | 0.827635 | 1.403124e-54 | -8.615850e-47 |
| Msa0582770 | Msa1354390 | 0.804194 | 2.427861e-49 | -8.615850e-47 |
| Msa0582780 | Msa1354390 | 0.841992 | 3.394412e-58 | -8.615850e-47 |
| Msa0582810 | Msa1354390 | 0.830537 | 2.776986e-55 | -8.615850e-47 |
| Msa0582820 | Msa1354390 | 0.843180 | 1.641611e-58 | -8.615850e-47 |
| Msa0582840 | Msa1354390 | 0.818039 | 2.412673e-52 | -8.615850e-47 |
| Msa0582890 | Msa1354390 | 0.825896 | 3.649901e-54 | -8.615850e-47 |
| Msa0582910 | Msa1354390 | 0.833312 | 5.731839e-56 | -8.615850e-47 |
| Msa0582920 | Msa1354390 | 0.820948 | 5.237537e-53 | -8.615850e-47 |
| Msa0582930 | Msa1354390 | 0.822031 | 2.944603e-53 | -8.615850e-47 |
| Msa0591370 | Msa1354390 | 0.802708 | 4.934181e-49 | -8.615850e-47 |
| Msa0591380 | Msa1354390 | 0.818247 | 2.165313e-52 | -8.615850e-47 |
| Msa0867640 | Msa1354390 | 0.868780 | 5.063611e-66 | -8.615850e-47 |
| Msa0867650 | Msa1354390 | 0.867657 | 1.164162e-65 | -8.615850e-47 |
| Msa0924850 | Msa1354390 | 0.818278 | 2.130876e-52 | -8.615850e-47 |
| Msa0924870 | Msa1354390 | 0.820579 | 6.366271e-53 | -8.615850e-47 |
| Msa0924880 | Msa1354390 | 0.815737 | 7.930354e-52 | -8.615850e-47 |
| Msa0924890 | Msa1354390 | 0.804017 | 2.643780e-49 | -8.615850e-47 |
| Msa0924990 | Msa1354390 | 0.833087 | 6.522644e-56 | -8.615850e-47 |
| Msa0925040 | Msa1354390 | 0.822035 | 2.938280e-53 | -8.615850e-47 |
| Msa0931070 | Msa1354390 | 0.841158 | 5.629590e-58 | -8.615850e-47 |
| Msa0931080 | Msa1354390 | 0.847364 | 1.211807e-59 | -8.615850e-47 |
| Msa0931100 | Msa1354390 | 0.826859 | 2.152670e-54 | -8.615850e-47 |
| Msa0931110 | Msa1354390 | 0.809604 | 1.743453e-50 | -8.615850e-47 |
| Msa0931130 | Msa1354390 | 0.843243 | 1.579302e-58 | -8.615850e-47 |
| Msa0931140 | Msa1354390 | 0.843884 | 1.064826e-58 | -8.615850e-47 |
| Msa0931160 | Msa1354390 | 0.815182 | 1.053763e-51 | -8.615850e-47 |
| Msa0931190 | Msa1354390 | 0.820837 | 5.553849e-53 | -8.615850e-47 |
| Msa0931210 | Msa1354390 | 0.831810 | 1.351956e-55 | -8.615850e-47 |
| Msa0931220 | Msa1354390 | 0.800158 | 1.643613e-48 | -8.615850e-47 |
| Msa0931230 | Msa1354390 | 0.802835 | 4.645729e-49 | -8.615850e-47 |
| Msa0931240 | Msa1354390 | 0.836130 | 1.120326e-56 | -8.615850e-47 |
| Msa0931260 | Msa1354390 | 0.835064 | 2.085616e-56 | -8.615850e-47 |
| Msa0931270 | Msa1354390 | 0.820322 | 7.291201e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354390 | MtrunA17_Chr7g0229301 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1354390 | MtrunA17_Chr6g0454441 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1354390 | MtrunA17_Chr4g0016451 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1354390 | MtrunA17_Chr6g0466281 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1354390 | MtrunA17_CPg0493311 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 1.37e-143 | 398 |
| Msa1354390 | MtrunA17_Chr7g0229661 | 84.080 | 201 | 13 | 1 | 1 | 201 | 1 | 182 | 1.89e-115 | 327 |
| Msa1354390 | MtrunA17_Chr4g0015291 | 97.436 | 156 | 4 | 0 | 1 | 156 | 1 | 156 | 3.32e-108 | 307 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1354390 | ATCG00380.1 | 88.060 | 201 | 24 | 0 | 1 | 201 | 1 | 201 | 2.12e-126 | 355 |
Find 33 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATAATAGATAGTAAA+TGG | 0.189787 | tig0014543:-224446 | Msa1354390:CDS |
| GATTGACTAATCCTTTATAT+TGG | 0.284280 | tig0014543:+224466 | None:intergenic |
| CTTGATCCATTCCAATATAA+AGG | 0.291752 | tig0014543:-224477 | Msa1354390:CDS |
| CTTAAATACGTTCGTATCGC+TGG | 0.342652 | tig0014543:-224777 | Msa1354390:CDS |
| ACAATTACTTGAAATGCGTT+TGG | 0.359489 | tig0014543:-224721 | Msa1354390:CDS |
| TTTGAAAATTAATGAATTGC+TGG | 0.365999 | tig0014543:-224418 | Msa1354390:CDS |
| ATGGATTGGCAATTCTTCGC+GGG | 0.450528 | tig0014543:+224506 | None:intergenic |
| TACCAGGACTAACTAGTAAA+CGG | 0.463029 | tig0014543:-224920 | Msa1354390:CDS |
| TGAGGTTTGCAACGATAACT+TGG | 0.468099 | tig0014543:+224597 | None:intergenic |
| ACTAATCCTTTATATTGGAA+TGG | 0.475526 | tig0014543:+224471 | None:intergenic |
| GTCTGTGGTTAACTAATTGA+CGG | 0.477609 | tig0014543:+224652 | None:intergenic |
| TCAAATAATAGATAGTAAAT+GGG | 0.487910 | tig0014543:-224445 | Msa1354390:CDS |
| ATAATAGATAGTAAATGGGT+TGG | 0.504615 | tig0014543:-224441 | Msa1354390:CDS |
| CTAAGTTCGCTTCCAACTGT+AGG | 0.508663 | tig0014543:+224897 | None:intergenic |
| GGATCAAGAGTCAAATGGAT+TGG | 0.511159 | tig0014543:+224492 | None:intergenic |
| GGAAAAGCGAAAGGTTCAAC+CGG | 0.516182 | tig0014543:-224756 | Msa1354390:CDS |
| TCTGTGGTTAACTAATTGAC+GGG | 0.521261 | tig0014543:+224653 | None:intergenic |
| GGCCGTTTACTAGTTAGTCC+TGG | 0.527000 | tig0014543:+224918 | None:intergenic |
| AATGGATTGGCAATTCTTCG+CGG | 0.545268 | tig0014543:+224505 | None:intergenic |
| TCAAGATATTATTACAGCGA+AGG | 0.559737 | tig0014543:-224577 | Msa1354390:CDS |
| TTCGCTGTAATAATATCTTG+AGG | 0.560954 | tig0014543:+224579 | None:intergenic |
| TAATTGTAGTAAAACTTGAC+CGG | 0.568250 | tig0014543:+224737 | None:intergenic |
| ACTAGTAAACGGCCTACAGT+TGG | 0.568372 | tig0014543:-224909 | Msa1354390:CDS |
| CAAGATATTATTACAGCGAA+GGG | 0.569002 | tig0014543:-224576 | Msa1354390:CDS |
| TTAACTAATTGACGGGCTTG+AGG | 0.581554 | tig0014543:+224660 | None:intergenic |
| GGAATGGATCAAGAGTCAAA+TGG | 0.582974 | tig0014543:+224487 | None:intergenic |
| GATTGGCAATTCTTCGCGGG+GGG | 0.584547 | tig0014543:+224509 | None:intergenic |
| TGGATTGGCAATTCTTCGCG+GGG | 0.610754 | tig0014543:+224507 | None:intergenic |
| TGTTTATGTCACGTTACAGA+GGG | 0.632465 | tig0014543:-224977 | None:intergenic |
| GTGTTTATGTCACGTTACAG+AGG | 0.633128 | tig0014543:-224978 | None:intergenic |
| CGTATCGCTGGAAAAGCGAA+AGG | 0.633501 | tig0014543:-224765 | Msa1354390:CDS |
| CATTAACTAAAACATGTCTG+TGG | 0.663264 | tig0014543:+224637 | None:intergenic |
| GGATTGGCAATTCTTCGCGG+GGG | 0.681198 | tig0014543:+224508 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAATAATAGATAGTAAA+TGG | - | tig0014543:224915-224934 | Msa1354390:CDS | 15.0% |
| !! | TCAAATAATAGATAGTAAAT+GGG | - | tig0014543:224916-224935 | Msa1354390:CDS | 15.0% |
| !! | TTTGAAAATTAATGAATTGC+TGG | - | tig0014543:224943-224962 | Msa1354390:CDS | 20.0% |
| !! | CAAAAATTGCGTTTTCATTA+TGG | - | tig0014543:224542-224561 | Msa1354390:CDS | 25.0% |
| ! | TAATTGTAGTAAAACTTGAC+CGG | + | tig0014543:224627-224646 | None:intergenic | 25.0% |
| !!! | GATAACATACTTTTTCGATT+GGG | - | tig0014543:224662-224681 | Msa1354390:CDS | 25.0% |
| ! | ACTAATCCTTTATATTGGAA+TGG | + | tig0014543:224893-224912 | None:intergenic | 25.0% |
| ! | GATTGACTAATCCTTTATAT+TGG | + | tig0014543:224898-224917 | None:intergenic | 25.0% |
| ! | ATAATAGATAGTAAATGGGT+TGG | - | tig0014543:224920-224939 | Msa1354390:CDS | 25.0% |
| TTTCAAAAAAATACGTCGTC+TGG | - | tig0014543:224412-224431 | Msa1354390:CDS | 30.0% | |
| TTCAAAAAAATACGTCGTCT+GGG | - | tig0014543:224413-224432 | Msa1354390:CDS | 30.0% | |
| ACAATTACTTGAAATGCGTT+TGG | - | tig0014543:224640-224659 | Msa1354390:CDS | 30.0% | |
| !!! | GGATAACATACTTTTTCGAT+TGG | - | tig0014543:224661-224680 | Msa1354390:CDS | 30.0% |
| CATTAACTAAAACATGTCTG+TGG | + | tig0014543:224727-224746 | None:intergenic | 30.0% | |
| !!! | CACAGACATGTTTTAGTTAA+TGG | - | tig0014543:224725-224744 | Msa1354390:CDS | 30.0% |
| TTCGCTGTAATAATATCTTG+AGG | + | tig0014543:224785-224804 | None:intergenic | 30.0% | |
| TCAAGATATTATTACAGCGA+AGG | - | tig0014543:224784-224803 | Msa1354390:CDS | 30.0% | |
| CAAGATATTATTACAGCGAA+GGG | - | tig0014543:224785-224804 | Msa1354390:CDS | 30.0% | |
| CTTGATCCATTCCAATATAA+AGG | - | tig0014543:224884-224903 | Msa1354390:CDS | 30.0% | |
| !!! | CGACGTATTTTTTTGAAACG+AGG | + | tig0014543:224410-224429 | None:intergenic | 35.0% |
| TCAAAAAAATACGTCGTCTG+GGG | - | tig0014543:224414-224433 | Msa1354390:CDS | 35.0% | |
| TACCAGGACTAACTAGTAAA+CGG | - | tig0014543:224441-224460 | Msa1354390:CDS | 35.0% | |
| !!! | CATACTTTTTCGATTGGGTA+TGG | - | tig0014543:224667-224686 | Msa1354390:CDS | 35.0% |
| TCTGTGGTTAACTAATTGAC+GGG | + | tig0014543:224711-224730 | None:intergenic | 35.0% | |
| GTCTGTGGTTAACTAATTGA+CGG | + | tig0014543:224712-224731 | None:intergenic | 35.0% | |
| CAAAAAAATACGTCGTCTGG+GGG | - | tig0014543:224415-224434 | Msa1354390:CDS | 40.0% | |
| !!! | ATTTTTTACTCGAGCGCGAT+TGG | + | tig0014543:224493-224512 | None:intergenic | 40.0% |
| CTTAAATACGTTCGTATCGC+TGG | - | tig0014543:224584-224603 | Msa1354390:CDS | 40.0% | |
| !! | TTAACTAATTGACGGGCTTG+AGG | + | tig0014543:224704-224723 | None:intergenic | 40.0% |
| TGAGGTTTGCAACGATAACT+TGG | + | tig0014543:224767-224786 | None:intergenic | 40.0% | |
| !! | AATGGATTGGCAATTCTTCG+CGG | + | tig0014543:224859-224878 | None:intergenic | 40.0% |
| GGATCAAGAGTCAAATGGAT+TGG | + | tig0014543:224872-224891 | None:intergenic | 40.0% | |
| GGAATGGATCAAGAGTCAAA+TGG | + | tig0014543:224877-224896 | None:intergenic | 40.0% | |
| ACTAGTAAACGGCCTACAGT+TGG | - | tig0014543:224452-224471 | Msa1354390:CDS | 45.0% | |
| CTAAGTTCGCTTCCAACTGT+AGG | + | tig0014543:224467-224486 | None:intergenic | 45.0% | |
| GGAAAAGCGAAAGGTTCAAC+CGG | - | tig0014543:224605-224624 | Msa1354390:CDS | 45.0% | |
| !! | ATGGATTGGCAATTCTTCGC+GGG | + | tig0014543:224858-224877 | None:intergenic | 45.0% |
| GGCCGTTTACTAGTTAGTCC+TGG | + | tig0014543:224446-224465 | None:intergenic | 50.0% | |
| CGTATCGCTGGAAAAGCGAA+AGG | - | tig0014543:224596-224615 | Msa1354390:CDS | 50.0% | |
| !! | TGGATTGGCAATTCTTCGCG+GGG | + | tig0014543:224857-224876 | None:intergenic | 50.0% |
| GATTGGCAATTCTTCGCGGG+GGG | + | tig0014543:224855-224874 | None:intergenic | 55.0% | |
| ! | GGATTGGCAATTCTTCGCGG+GGG | + | tig0014543:224856-224875 | None:intergenic | 55.0% |
| CGTCGTCTGGGGGCTTTACC+AGG | - | tig0014543:224425-224444 | Msa1354390:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0014543 | gene | 224389 | 224994 | 224389 | ID=Msa1354390;Name=Msa1354390 |
| tig0014543 | mRNA | 224389 | 224994 | 224389 | ID=Msa1354390-mRNA-1;Parent=Msa1354390;Name=Msa1354390-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|201 |
| tig0014543 | exon | 224389 | 224994 | 224389 | ID=Msa1354390-mRNA-1:exon:9113;Parent=Msa1354390-mRNA-1 |
| tig0014543 | CDS | 224389 | 224994 | 224389 | ID=Msa1354390-mRNA-1:cds;Parent=Msa1354390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
