Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351450 | XP_039684350.1 | 93.220 | 177 | 12 | 0 | 1 | 177 | 43 | 219 | 2.54e-117 | 341 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351450 | sp|P49332|GSTXC_TOBAC | 62.921 | 178 | 65 | 1 | 1 | 177 | 44 | 221 | 2.63e-78 | 235 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351450 | B7FGX6 | 93.220 | 177 | 12 | 0 | 1 | 177 | 43 | 219 | 1.22e-117 | 341 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1351450 | 0.830871 | 2.301032e-55 | -8.615850e-47 |
| Msa0044020 | Msa1351450 | 0.801401 | 9.162658e-49 | -8.615850e-47 |
| Msa0053780 | Msa1351450 | 0.806422 | 8.291413e-50 | -8.615850e-47 |
| Msa0078650 | Msa1351450 | 0.802799 | 4.725316e-49 | -8.615850e-47 |
| Msa0110970 | Msa1351450 | 0.841837 | 3.729905e-58 | -8.615850e-47 |
| Msa1351450 | Msa1373330 | 0.807198 | 5.683511e-50 | -8.615850e-47 |
| Msa1351450 | Msa1409870 | 0.808750 | 2.656714e-50 | -8.615850e-47 |
| Msa1351450 | Msa1424680 | 0.805154 | 1.530923e-49 | -8.615850e-47 |
| Msa1351450 | Msa1459180 | 0.823258 | 1.525638e-53 | -8.615850e-47 |
| Msa1351450 | Msa1460020 | 0.812600 | 3.908296e-51 | -8.615850e-47 |
| Msa0638070 | Msa1351450 | 0.826885 | 2.121991e-54 | -8.615850e-47 |
| Msa0647130 | Msa1351450 | 0.809585 | 1.759124e-50 | -8.615850e-47 |
| Msa0657970 | Msa1351450 | 0.808317 | 3.286262e-50 | -8.615850e-47 |
| Msa0682550 | Msa1351450 | 0.826565 | 2.529544e-54 | -8.615850e-47 |
| Msa0684500 | Msa1351450 | 0.812512 | 4.084036e-51 | -8.615850e-47 |
| Msa0693380 | Msa1351450 | 0.811233 | 7.755512e-51 | -8.615850e-47 |
| Msa0124340 | Msa1351450 | 0.804279 | 2.331361e-49 | -8.615850e-47 |
| Msa0140780 | Msa1351450 | 0.813473 | 2.514045e-51 | -8.615850e-47 |
| Msa0148100 | Msa1351450 | 0.815258 | 1.013517e-51 | -8.615850e-47 |
| Msa0157290 | Msa1351450 | 0.831759 | 1.391178e-55 | -8.615850e-47 |
| Msa0197930 | Msa1351450 | 0.803376 | 3.589825e-49 | -8.615850e-47 |
| Msa0205840 | Msa1351450 | 0.804432 | 2.166299e-49 | -8.615850e-47 |
| Msa0205850 | Msa1351450 | 0.800729 | 1.257194e-48 | -8.615850e-47 |
| Msa1233890 | Msa1351450 | 0.805098 | 1.572363e-49 | -8.615850e-47 |
| Msa1238470 | Msa1351450 | 0.801719 | 7.885083e-49 | -8.615850e-47 |
| Msa1243040 | Msa1351450 | 0.834434 | 3.003810e-56 | -8.615850e-47 |
| Msa1343070 | Msa1351450 | 0.802765 | 4.802341e-49 | -8.615850e-47 |
| Msa0369850 | Msa1351450 | 0.809893 | 1.511046e-50 | -8.615850e-47 |
| Msa0410650 | Msa1351450 | 0.807053 | 6.099593e-50 | -8.615850e-47 |
| Msa0417880 | Msa1351450 | 0.819303 | 1.246598e-52 | -8.615850e-47 |
| Msa0426330 | Msa1351450 | 0.803522 | 3.349599e-49 | -8.615850e-47 |
| Msa0452960 | Msa1351450 | 0.804238 | 2.377727e-49 | -8.615850e-47 |
| Msa0990350 | Msa1351450 | 0.813275 | 2.779723e-51 | -8.615850e-47 |
| Msa1082500 | Msa1351450 | 0.827952 | 1.177058e-54 | -8.615850e-47 |
| Msa1085200 | Msa1351450 | 0.804023 | 2.635588e-49 | -8.615850e-47 |
| Msa0243100 | Msa1351450 | 0.806385 | 8.441252e-50 | -8.615850e-47 |
| Msa0243710 | Msa1351450 | 0.810459 | 1.140938e-50 | -8.615850e-47 |
| Msa0244860 | Msa1351450 | 0.805194 | 1.501285e-49 | -8.615850e-47 |
| Msa0248970 | Msa1351450 | 0.809853 | 1.540560e-50 | -8.615850e-47 |
| Msa0276920 | Msa1351450 | 0.817857 | 2.652438e-52 | -8.615850e-47 |
| Msa0283450 | Msa1351450 | 0.807645 | 4.568209e-50 | -8.615850e-47 |
| Msa0283520 | Msa1351450 | 0.811616 | 6.403176e-51 | -8.615850e-47 |
| Msa0287650 | Msa1351450 | 0.824120 | 9.587505e-54 | -8.615850e-47 |
| Msa0316800 | Msa1351450 | 0.814559 | 1.448471e-51 | -8.615850e-47 |
| Msa0316850 | Msa1351450 | 0.813146 | 2.966704e-51 | -8.615850e-47 |
| Msa0323610 | Msa1351450 | 0.800607 | 1.331413e-48 | -8.615850e-47 |
| Msa0332000 | Msa1351450 | 0.806365 | 8.521571e-50 | -8.615850e-47 |
| Msa0333920 | Msa1351450 | 0.823670 | 1.222187e-53 | -8.615850e-47 |
| Msa0333930 | Msa1351450 | 0.801185 | 1.014211e-48 | -8.615850e-47 |
| Msa0334040 | Msa1351450 | 0.830949 | 2.201908e-55 | -8.615850e-47 |
| Msa0335040 | Msa1351450 | 0.802545 | 5.332707e-49 | -8.615850e-47 |
| Msa1139810 | Msa1351450 | 0.813622 | 2.332348e-51 | -8.615850e-47 |
| Msa1151910 | Msa1351450 | 0.802586 | 5.229296e-49 | -8.615850e-47 |
| Msa1172670 | Msa1351450 | 0.805555 | 1.261666e-49 | -8.615850e-47 |
| Msa0484780 | Msa1351450 | 0.805183 | 1.509441e-49 | -8.615850e-47 |
| Msa0495320 | Msa1351450 | 0.805529 | 1.277271e-49 | -8.615850e-47 |
| Msa0507680 | Msa1351450 | 0.804904 | 1.727116e-49 | -8.615850e-47 |
| Msa0509610 | Msa1351450 | 0.807914 | 4.004508e-50 | -8.615850e-47 |
| Msa0574890 | Msa1351450 | 0.806488 | 8.026981e-50 | -8.615850e-47 |
| Msa0587940 | Msa1351450 | 0.815483 | 9.035705e-52 | -8.615850e-47 |
| Msa0844240 | Msa1351450 | 0.806622 | 7.521494e-50 | -8.615850e-47 |
| Msa0880140 | Msa1351450 | 0.830293 | 3.186056e-55 | -8.615850e-47 |
| Msa0908050 | Msa1351450 | 0.806847 | 6.742940e-50 | -8.615850e-47 |
| Msa0930780 | Msa1351450 | 0.802444 | 5.594418e-49 | -8.615850e-47 |
| Msa0953550 | Msa1351450 | 0.805497 | 1.297268e-49 | -8.615850e-47 |
| Msa0954130 | Msa1351450 | 0.800918 | 1.150106e-48 | -8.615850e-47 |
| Msa0954550 | Msa1351450 | 0.816138 | 6.453119e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351450 | MtrunA17_Chr8g0357211 | 93.220 | 177 | 12 | 0 | 1 | 177 | 43 | 219 | 2.34e-121 | 341 |
| Msa1351450 | MtrunA17_Chr8g0357241 | 90.960 | 177 | 16 | 0 | 1 | 177 | 43 | 219 | 1.80e-119 | 336 |
| Msa1351450 | MtrunA17_Chr2g0312681 | 61.017 | 177 | 69 | 0 | 1 | 177 | 43 | 219 | 6.04e-77 | 229 |
| Msa1351450 | MtrunA17_Chr2g0312771 | 60.452 | 177 | 70 | 0 | 1 | 177 | 43 | 219 | 1.30e-76 | 228 |
| Msa1351450 | MtrunA17_Chr2g0312691 | 62.712 | 177 | 66 | 0 | 1 | 177 | 43 | 219 | 1.37e-76 | 228 |
| Msa1351450 | MtrunA17_Chr2g0312751 | 60.452 | 177 | 70 | 0 | 1 | 177 | 43 | 219 | 2.58e-76 | 227 |
| Msa1351450 | MtrunA17_Chr3g0107731 | 55.367 | 177 | 79 | 0 | 1 | 177 | 48 | 224 | 1.68e-73 | 220 |
| Msa1351450 | MtrunA17_Chr2g0312791 | 61.714 | 175 | 65 | 2 | 2 | 174 | 44 | 218 | 2.47e-73 | 219 |
| Msa1351450 | MtrunA17_Chr2g0312781 | 59.884 | 172 | 69 | 0 | 1 | 172 | 60 | 231 | 6.76e-73 | 219 |
| Msa1351450 | MtrunA17_Chr3g0107741 | 55.932 | 177 | 78 | 0 | 1 | 177 | 48 | 224 | 1.23e-72 | 218 |
| Msa1351450 | MtrunA17_Chr2g0312731 | 55.367 | 177 | 79 | 0 | 1 | 177 | 43 | 219 | 6.41e-72 | 216 |
| Msa1351450 | MtrunA17_Chr2g0312811 | 54.802 | 177 | 80 | 0 | 1 | 177 | 45 | 221 | 2.96e-70 | 212 |
| Msa1351450 | MtrunA17_Chr2g0312711 | 58.757 | 177 | 72 | 1 | 1 | 177 | 43 | 218 | 1.55e-69 | 210 |
| Msa1351450 | MtrunA17_Chr2g0312721 | 55.689 | 167 | 74 | 0 | 1 | 167 | 43 | 209 | 9.91e-65 | 197 |
| Msa1351450 | MtrunA17_Chr4g0069471 | 63.571 | 140 | 49 | 1 | 1 | 140 | 65 | 202 | 4.71e-61 | 188 |
| Msa1351450 | MtrunA17_Chr5g0433801 | 52.326 | 172 | 81 | 1 | 1 | 172 | 46 | 216 | 2.56e-60 | 187 |
| Msa1351450 | MtrunA17_Chr7g0240691 | 41.176 | 170 | 94 | 4 | 1 | 166 | 76 | 243 | 1.43e-33 | 119 |
| Msa1351450 | MtrunA17_Chr7g0240681 | 38.235 | 170 | 99 | 4 | 1 | 166 | 46 | 213 | 3.22e-33 | 117 |
| Msa1351450 | MtrunA17_Chr1g0196661 | 38.012 | 171 | 101 | 3 | 1 | 167 | 42 | 211 | 1.11e-32 | 116 |
| Msa1351450 | MtrunA17_Chr7g0240641 | 38.690 | 168 | 98 | 4 | 2 | 166 | 47 | 212 | 1.12e-32 | 116 |
| Msa1351450 | MtrunA17_Chr7g0240631 | 36.686 | 169 | 102 | 4 | 1 | 166 | 46 | 212 | 7.41e-32 | 114 |
| Msa1351450 | MtrunA17_Chr7g0240541 | 39.326 | 178 | 100 | 5 | 1 | 175 | 46 | 218 | 9.66e-32 | 114 |
| Msa1351450 | MtrunA17_Chr4g0029341 | 39.412 | 170 | 98 | 3 | 2 | 167 | 44 | 212 | 1.46e-31 | 113 |
| Msa1351450 | MtrunA17_Chr7g0240611 | 44.828 | 145 | 75 | 5 | 2 | 145 | 47 | 187 | 5.93e-31 | 112 |
| Msa1351450 | MtrunA17_Chr4g0008781 | 35.714 | 168 | 103 | 4 | 2 | 166 | 48 | 213 | 6.52e-31 | 111 |
| Msa1351450 | MtrunA17_Chr8g0379581 | 36.478 | 159 | 98 | 2 | 1 | 157 | 44 | 201 | 1.47e-30 | 110 |
| Msa1351450 | MtrunA17_Chr7g0240531 | 40.223 | 179 | 97 | 6 | 1 | 175 | 46 | 218 | 2.44e-30 | 110 |
| Msa1351450 | MtrunA17_Chr8g0363751 | 40.625 | 160 | 88 | 4 | 1 | 153 | 46 | 205 | 4.06e-30 | 110 |
| Msa1351450 | MtrunA17_Chr4g0008791 | 37.500 | 160 | 95 | 4 | 1 | 157 | 46 | 203 | 4.54e-30 | 109 |
| Msa1351450 | MtrunA17_Chr7g0240511 | 40.113 | 177 | 93 | 7 | 2 | 175 | 47 | 213 | 9.58e-30 | 108 |
| Msa1351450 | MtrunA17_Chr6g0483141 | 37.017 | 181 | 104 | 5 | 1 | 174 | 42 | 219 | 1.08e-29 | 108 |
| Msa1351450 | MtrunA17_Chr3g0132581 | 47.244 | 127 | 66 | 1 | 1 | 127 | 44 | 169 | 1.78e-29 | 108 |
| Msa1351450 | MtrunA17_Chr5g0415411 | 39.444 | 180 | 94 | 6 | 1 | 168 | 44 | 220 | 2.05e-29 | 108 |
| Msa1351450 | MtrunA17_Chr8g0379561 | 38.621 | 145 | 86 | 2 | 1 | 143 | 45 | 188 | 3.29e-29 | 107 |
| Msa1351450 | MtrunA17_Chr7g0240671 | 49.138 | 116 | 56 | 3 | 2 | 116 | 44 | 157 | 3.42e-29 | 107 |
| Msa1351450 | MtrunA17_Chr1g0196721 | 38.824 | 170 | 99 | 3 | 1 | 166 | 41 | 209 | 7.13e-29 | 106 |
| Msa1351450 | MtrunA17_Chr7g0240551 | 37.079 | 178 | 104 | 5 | 1 | 175 | 46 | 218 | 8.88e-29 | 106 |
| Msa1351450 | MtrunA17_Chr7g0240561 | 40.268 | 149 | 82 | 5 | 1 | 145 | 46 | 191 | 1.57e-27 | 103 |
| Msa1351450 | MtrunA17_Chr7g0240581 | 40.136 | 147 | 83 | 4 | 2 | 145 | 47 | 191 | 1.59e-27 | 103 |
| Msa1351450 | MtrunA17_Chr5g0417011 | 31.902 | 163 | 104 | 2 | 2 | 157 | 47 | 209 | 1.79e-27 | 102 |
| Msa1351450 | MtrunA17_Chr1g0196771 | 47.458 | 118 | 56 | 4 | 1 | 115 | 42 | 156 | 3.82e-27 | 102 |
| Msa1351450 | MtrunA17_Chr1g0196691 | 37.143 | 175 | 96 | 5 | 2 | 167 | 68 | 237 | 7.76e-27 | 102 |
| Msa1351450 | MtrunA17_Chr2g0313561 | 61.111 | 72 | 28 | 0 | 5 | 76 | 1 | 72 | 1.11e-26 | 96.7 |
| Msa1351450 | MtrunA17_Chr1g0212301 | 36.747 | 166 | 95 | 4 | 1 | 159 | 42 | 204 | 2.82e-26 | 99.8 |
| Msa1351450 | MtrunA17_Chr7g0240651 | 48.276 | 116 | 57 | 3 | 2 | 116 | 47 | 160 | 7.04e-26 | 98.6 |
| Msa1351450 | MtrunA17_Chr7g0240661 | 50.000 | 114 | 54 | 3 | 2 | 114 | 47 | 158 | 2.13e-25 | 97.4 |
| Msa1351450 | MtrunA17_Chr1g0196711 | 36.095 | 169 | 103 | 3 | 2 | 166 | 43 | 210 | 1.31e-24 | 95.5 |
| Msa1351450 | MtrunA17_Chr7g0240521 | 38.095 | 147 | 86 | 4 | 2 | 145 | 54 | 198 | 5.14e-24 | 94.0 |
| Msa1351450 | MtrunA17_Chr8g0391631 | 41.228 | 114 | 62 | 3 | 1 | 109 | 62 | 175 | 2.31e-21 | 85.9 |
| Msa1351450 | MtrunA17_Chr7g0263221 | 30.588 | 170 | 100 | 8 | 10 | 174 | 76 | 232 | 4.24e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1351450 | AT1G78380.1 | 60.920 | 174 | 68 | 0 | 1 | 174 | 43 | 216 | 2.76e-74 | 222 |
| Msa1351450 | AT1G17180.1 | 58.757 | 177 | 73 | 0 | 1 | 177 | 43 | 219 | 1.32e-73 | 221 |
| Msa1351450 | AT1G78370.1 | 57.803 | 173 | 73 | 0 | 1 | 173 | 43 | 215 | 2.11e-73 | 220 |
| Msa1351450 | AT1G78340.1 | 59.884 | 172 | 69 | 0 | 1 | 172 | 43 | 214 | 2.78e-72 | 217 |
| Msa1351450 | AT1G17170.1 | 58.192 | 177 | 73 | 1 | 1 | 177 | 43 | 218 | 3.99e-72 | 217 |
| Msa1351450 | AT1G78360.1 | 57.558 | 172 | 73 | 0 | 1 | 172 | 44 | 215 | 2.98e-70 | 212 |
| Msa1351450 | AT1G53680.1 | 54.023 | 174 | 78 | 2 | 1 | 172 | 46 | 219 | 3.15e-66 | 202 |
| Msa1351450 | AT1G17190.1 | 52.874 | 174 | 82 | 0 | 1 | 174 | 44 | 217 | 4.20e-65 | 199 |
| Msa1351450 | AT1G78320.1 | 54.651 | 172 | 78 | 0 | 1 | 172 | 43 | 214 | 1.56e-63 | 195 |
| Msa1351450 | AT3G43800.1 | 51.744 | 172 | 80 | 2 | 1 | 169 | 45 | 216 | 2.82e-56 | 177 |
| Msa1351450 | AT1G78320.2 | 44.186 | 172 | 69 | 1 | 1 | 172 | 43 | 187 | 6.15e-44 | 144 |
| Msa1351450 | AT3G09270.1 | 46.939 | 147 | 76 | 1 | 1 | 145 | 46 | 192 | 3.00e-36 | 125 |
| Msa1351450 | AT2G29420.1 | 40.331 | 181 | 94 | 6 | 1 | 175 | 48 | 220 | 1.74e-35 | 124 |
| Msa1351450 | AT2G29470.1 | 36.872 | 179 | 107 | 4 | 1 | 175 | 47 | 223 | 1.05e-32 | 117 |
| Msa1351450 | AT1G10370.1 | 38.286 | 175 | 100 | 4 | 1 | 167 | 44 | 218 | 6.21e-32 | 114 |
| Msa1351450 | AT2G29460.1 | 39.326 | 178 | 102 | 4 | 1 | 174 | 46 | 221 | 1.69e-31 | 113 |
| Msa1351450 | AT1G59700.1 | 39.130 | 184 | 102 | 5 | 1 | 175 | 46 | 228 | 8.01e-31 | 112 |
| Msa1351450 | AT2G29480.1 | 38.509 | 161 | 93 | 4 | 1 | 157 | 46 | 204 | 1.55e-28 | 106 |
| Msa1351450 | AT2G29490.1 | 38.125 | 160 | 95 | 2 | 1 | 157 | 46 | 204 | 1.71e-28 | 105 |
| Msa1351450 | AT5G62480.1 | 37.143 | 140 | 80 | 1 | 2 | 133 | 48 | 187 | 8.00e-28 | 104 |
| Msa1351450 | AT1G10360.1 | 36.571 | 175 | 103 | 4 | 1 | 167 | 44 | 218 | 1.20e-27 | 103 |
| Msa1351450 | AT1G59670.1 | 36.612 | 183 | 108 | 4 | 1 | 175 | 46 | 228 | 1.48e-27 | 103 |
| Msa1351450 | AT1G74590.1 | 32.044 | 181 | 111 | 4 | 2 | 173 | 47 | 224 | 2.57e-27 | 103 |
| Msa1351450 | AT2G29450.1 | 47.154 | 123 | 58 | 4 | 1 | 118 | 45 | 165 | 2.92e-27 | 102 |
| Msa1351450 | AT1G27130.1 | 34.483 | 174 | 107 | 3 | 1 | 167 | 47 | 220 | 3.20e-27 | 102 |
| Msa1351450 | AT1G27140.1 | 34.615 | 182 | 109 | 4 | 1 | 175 | 48 | 226 | 3.59e-27 | 102 |
| Msa1351450 | AT2G29440.1 | 44.628 | 121 | 63 | 2 | 1 | 118 | 45 | 164 | 4.29e-26 | 99.8 |
| Msa1351450 | AT1G69930.1 | 32.370 | 173 | 110 | 3 | 2 | 167 | 52 | 224 | 1.36e-25 | 98.6 |
| Msa1351450 | AT1G69920.1 | 33.523 | 176 | 106 | 4 | 1 | 167 | 75 | 248 | 2.25e-23 | 93.2 |
Find 47 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAACTCAAGCAAGATTT+TGG | 0.133634 | tig0012275:-96475 | Msa1351450:CDS |
| AGGATAGCATTGGCTGAAAA+AGG | 0.234872 | tig0012275:-96689 | Msa1351450:five_prime_UTR |
| AAAATGTAAACTAAACAATT+TGG | 0.242177 | tig0012275:-95746 | Msa1351450:three_prime_UTR |
| ACTTATTTGTATAACTATAT+TGG | 0.246318 | tig0012275:+95701 | None:intergenic |
| GGAGTTGATTGAAGGCTTAA+AGG | 0.261757 | tig0012275:-96079 | Msa1351450:CDS |
| ATAAAGATGGACTCAGAAAT+TGG | 0.267987 | tig0012275:+96560 | None:intergenic |
| CTTGGAGACAAGCCTTATTT+TGG | 0.284960 | tig0012275:-96042 | Msa1351450:CDS |
| TAAGACTATCATATTAATTA+AGG | 0.293716 | tig0012275:+95654 | None:intergenic |
| GATTCATTTGCAAAAGCATT+TGG | 0.343663 | tig0012275:+96624 | None:intergenic |
| GGTTGTTCCTATTAGTGCTT+TGG | 0.345626 | tig0012275:-95725 | Msa1351450:three_prime_UTR |
| GTGATGTTGGAGGAAGGATA+TGG | 0.346197 | tig0012275:-96137 | Msa1351450:CDS |
| TATTGGACCAAAGCACTAAT+AGG | 0.362495 | tig0012275:+95718 | None:intergenic |
| CTCTGAGAAATTGAACTTGT+TGG | 0.369958 | tig0012275:-95782 | Msa1351450:three_prime_UTR |
| AATTCCAGTTCTTATCCATA+AGG | 0.411200 | tig0012275:-96588 | Msa1351450:CDS |
| TGATGAGGTTTGGAAGGATA+AGG | 0.411738 | tig0012275:-96525 | Msa1351450:CDS |
| TTTCCCTTATGGATAAGAAC+TGG | 0.413273 | tig0012275:+96584 | None:intergenic |
| AAAGAGAGATGAGATTGAAT+TGG | 0.418834 | tig0012275:-96109 | Msa1351450:CDS |
| TTGAGTATATTGATGAGGTT+TGG | 0.428745 | tig0012275:-96535 | Msa1351450:CDS |
| TAAGGATCTGAGGGTAGAAA+TGG | 0.431150 | tig0012275:+96500 | None:intergenic |
| AATGTGTCACCACCAAAATA+AGG | 0.433956 | tig0012275:+96030 | None:intergenic |
| TGAGATTGAATTGGCAAAGA+AGG | 0.443100 | tig0012275:-96100 | Msa1351450:CDS |
| GACAAGATGACAATAGTCAT+TGG | 0.453221 | tig0012275:+95503 | None:intergenic |
| ATTCCAGTTCTTATCCATAA+GGG | 0.455725 | tig0012275:-96587 | Msa1351450:CDS |
| ATGAGTTTGTTGTTAACTAT+AGG | 0.457851 | tig0012275:-95840 | Msa1351450:CDS |
| TATAAAACCAACTATGAAAA+GGG | 0.461833 | tig0012275:+95983 | None:intergenic |
| GTATAAAACCAACTATGAAA+AGG | 0.463905 | tig0012275:+95982 | None:intergenic |
| TCTATATCTTCAAAATTCTC+AGG | 0.474784 | tig0012275:-95582 | Msa1351450:three_prime_UTR |
| AAAATGCAGGTTGGTGATGT+TGG | 0.476506 | tig0012275:-96150 | Msa1351450:intron |
| GCAAAGAAGGAGTTGATTGA+AGG | 0.480756 | tig0012275:-96087 | Msa1351450:CDS |
| TGATGTTGGAGGAAGGATAT+GGG | 0.485671 | tig0012275:-96136 | Msa1351450:CDS |
| AATATACTCAACAATAAAGA+TGG | 0.489706 | tig0012275:+96547 | None:intergenic |
| AAGGAATTAGAGAATGTGCT+TGG | 0.497037 | tig0012275:-96060 | Msa1351450:CDS |
| CTATAGGAAGAGGTTAGAGT+TGG | 0.508025 | tig0012275:-95824 | Msa1351450:CDS |
| AGGGATAAAGTATGAGTACA+AGG | 0.524364 | tig0012275:-96669 | Msa1351450:five_prime_UTR |
| CTATCCTTGCTCTCAAAACA+AGG | 0.535192 | tig0012275:+96705 | None:intergenic |
| TTGTTGTTAACTATAGGAAG+AGG | 0.543349 | tig0012275:-95834 | Msa1351450:CDS |
| TTTGAGAGCAAGGATAGCAT+TGG | 0.546018 | tig0012275:-96699 | Msa1351450:five_prime_UTR |
| GTATATTGATGAGGTTTGGA+AGG | 0.548215 | tig0012275:-96531 | Msa1351450:CDS |
| GTTGGAGGAAGGATATGGGC+TGG | 0.551186 | tig0012275:-96132 | Msa1351450:CDS |
| ATTATGCGACTTCAAAGTTG+AGG | 0.582566 | tig0012275:-95950 | Msa1351450:CDS |
| TATTGTTGAGTATATTGATG+AGG | 0.592193 | tig0012275:-96540 | Msa1351450:CDS |
| ATGCAGGTTGGTGATGTTGG+AGG | 0.604533 | tig0012275:-96147 | Msa1351450:intron |
| TATCTTCAAAATTCTCAGGT+CGG | 0.616743 | tig0012275:-95578 | Msa1351450:three_prime_UTR |
| AGTGTGATAAACTGATTGCA+TGG | 0.628334 | tig0012275:-95924 | Msa1351450:CDS |
| AAACTGAAACACATAAGTAG+AGG | 0.640204 | tig0012275:+95526 | None:intergenic |
| AGGTTGGTGATGTTGGAGGA+AGG | 0.655636 | tig0012275:-96143 | Msa1351450:CDS |
| GTGTGATAAACTGATTGCAT+GGG | 0.669961 | tig0012275:-95923 | Msa1351450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATATTTTTATTTATTTAC+TGG | + | tig0012275:95880-95899 | None:intergenic | 10.0% |
| !!! | AGATATTTTTATTTATTTAC+TGG | + | tig0012275:95880-95899 | None:intergenic | 10.0% |
| !!! | ATTTTTATTTATTTACTGGT+AGG | + | tig0012275:95876-95895 | None:intergenic | 15.0% |
| !! | AAAATGTAAACTAAACAATT+TGG | - | tig0012275:96498-96517 | Msa1351450:CDS | 15.0% |
| !! | ACTTATTTGTATAACTATAT+TGG | + | tig0012275:96546-96565 | None:intergenic | 15.0% |
| !! | TAAGACTATCATATTAATTA+AGG | + | tig0012275:96593-96612 | None:intergenic | 15.0% |
| !!! | ATTTTTATTTATTTACTGGT+AGG | + | tig0012275:95876-95895 | None:intergenic | 15.0% |
| !! | AAAATGTAAACTAAACAATT+TGG | - | tig0012275:96498-96517 | Msa1351450:CDS | 15.0% |
| !! | ACTTATTTGTATAACTATAT+TGG | + | tig0012275:96546-96565 | None:intergenic | 15.0% |
| !! | TAAGACTATCATATTAATTA+AGG | + | tig0012275:96593-96612 | None:intergenic | 15.0% |
| !! | AATATACTCAACAATAAAGA+TGG | + | tig0012275:95700-95719 | None:intergenic | 20.0% |
| !! | CATTCTTGATATTTAATCAA+TGG | - | tig0012275:95986-96005 | Msa1351450:CDS | 20.0% |
| !! | TTCTCTTGTCTTTAATAATA+TGG | + | tig0012275:96040-96059 | None:intergenic | 20.0% |
| !! | TAATGTGTTAAAAAAAATGC+AGG | - | tig0012275:96081-96100 | Msa1351450:CDS | 20.0% |
| !! | TATAAAACCAACTATGAAAA+GGG | + | tig0012275:96264-96283 | None:intergenic | 20.0% |
| !! | AATATACTCAACAATAAAGA+TGG | + | tig0012275:95700-95719 | None:intergenic | 20.0% |
| !! | CATTCTTGATATTTAATCAA+TGG | - | tig0012275:95986-96005 | Msa1351450:CDS | 20.0% |
| !! | TTCTCTTGTCTTTAATAATA+TGG | + | tig0012275:96040-96059 | None:intergenic | 20.0% |
| !! | TAATGTGTTAAAAAAAATGC+AGG | - | tig0012275:96081-96100 | Msa1351450:CDS | 20.0% |
| !! | TATAAAACCAACTATGAAAA+GGG | + | tig0012275:96264-96283 | None:intergenic | 20.0% |
| ! | TATTGTTGAGTATATTGATG+AGG | - | tig0012275:95704-95723 | Msa1351450:three_prime_UTR | 25.0% |
| ! | AAACTCATATCTTATTAGGA+AGG | + | tig0012275:95960-95979 | None:intergenic | 25.0% |
| ! | TCCTAATAAGATATGAGTTT+AGG | - | tig0012275:95960-95979 | Msa1351450:CDS | 25.0% |
| ! | TCCTAAACTCATATCTTATT+AGG | + | tig0012275:95964-95983 | None:intergenic | 25.0% |
| ! | GTATAAAACCAACTATGAAA+AGG | + | tig0012275:96265-96284 | None:intergenic | 25.0% |
| !!! | ATGAGTTTGTTGTTAACTAT+AGG | - | tig0012275:96404-96423 | Msa1351450:intron | 25.0% |
| ! | TCTATATCTTCAAAATTCTC+AGG | - | tig0012275:96662-96681 | Msa1351450:five_prime_UTR | 25.0% |
| ! | TATTGTTGAGTATATTGATG+AGG | - | tig0012275:95704-95723 | Msa1351450:three_prime_UTR | 25.0% |
| ! | AAACTCATATCTTATTAGGA+AGG | + | tig0012275:95960-95979 | None:intergenic | 25.0% |
| ! | TCCTAATAAGATATGAGTTT+AGG | - | tig0012275:95960-95979 | Msa1351450:CDS | 25.0% |
| ! | TCCTAAACTCATATCTTATT+AGG | + | tig0012275:95964-95983 | None:intergenic | 25.0% |
| ! | GTATAAAACCAACTATGAAA+AGG | + | tig0012275:96265-96284 | None:intergenic | 25.0% |
| !!! | ATGAGTTTGTTGTTAACTAT+AGG | - | tig0012275:96404-96423 | Msa1351450:intron | 25.0% |
| ! | TCTATATCTTCAAAATTCTC+AGG | - | tig0012275:96662-96681 | Msa1351450:five_prime_UTR | 25.0% |
| !!! | TTTTGAAACAAGTACATGCT+TGG | - | tig0012275:95491-95510 | Msa1351450:three_prime_UTR | 30.0% |
| !! | GATTCATTTGCAAAAGCATT+TGG | + | tig0012275:95623-95642 | None:intergenic | 30.0% |
| ! | ACTGGAATTTTCTTGTGAAT+TGG | + | tig0012275:95645-95664 | None:intergenic | 30.0% |
| AATTCCAGTTCTTATCCATA+AGG | - | tig0012275:95656-95675 | Msa1351450:three_prime_UTR | 30.0% | |
| ATTCCAGTTCTTATCCATAA+GGG | - | tig0012275:95657-95676 | Msa1351450:three_prime_UTR | 30.0% | |
| ! | ATAAAGATGGACTCAGAAAT+TGG | + | tig0012275:95687-95706 | None:intergenic | 30.0% |
| TTGAGTATATTGATGAGGTT+TGG | - | tig0012275:95709-95728 | Msa1351450:three_prime_UTR | 30.0% | |
| ! | AGAAAACTCAAGCAAGATTT+TGG | - | tig0012275:95769-95788 | Msa1351450:three_prime_UTR | 30.0% |
| ! | GAAAACTCAAGCAAGATTTT+GGG | - | tig0012275:95770-95789 | Msa1351450:three_prime_UTR | 30.0% |
| ! | AAAACTCAAGCAAGATTTTG+GGG | - | tig0012275:95771-95790 | Msa1351450:three_prime_UTR | 30.0% |
| !!! | ACAAGAAGGTAAGTTTTGTT+AGG | - | tig0012275:95805-95824 | Msa1351450:exon | 30.0% |
| GAATGAGACACAAAAAACTT+TGG | + | tig0012275:95833-95852 | None:intergenic | 30.0% | |
| !!! | GTTTTTTGTGTCTCATTCAA+TGG | - | tig0012275:95835-95854 | Msa1351450:CDS | 30.0% |
| CATATCTTATTAGGAAGGAA+AGG | + | tig0012275:95955-95974 | None:intergenic | 30.0% | |
| GTGTTAAAAAAAATGCAGGT+TGG | - | tig0012275:96085-96104 | Msa1351450:CDS | 30.0% | |
| AAAGAGAGATGAGATTGAAT+TGG | - | tig0012275:96135-96154 | Msa1351450:CDS | 30.0% | |
| ! | TTGTTGTTAACTATAGGAAG+AGG | - | tig0012275:96410-96429 | Msa1351450:intron | 30.0% |
| TATCTTCAAAATTCTCAGGT+CGG | - | tig0012275:96666-96685 | Msa1351450:five_prime_UTR | 30.0% | |
| AAACTGAAACACATAAGTAG+AGG | + | tig0012275:96721-96740 | None:intergenic | 30.0% | |
| !!! | TTTTGAAACAAGTACATGCT+TGG | - | tig0012275:95491-95510 | Msa1351450:three_prime_UTR | 30.0% |
| !! | GATTCATTTGCAAAAGCATT+TGG | + | tig0012275:95623-95642 | None:intergenic | 30.0% |
| ! | ACTGGAATTTTCTTGTGAAT+TGG | + | tig0012275:95645-95664 | None:intergenic | 30.0% |
| AATTCCAGTTCTTATCCATA+AGG | - | tig0012275:95656-95675 | Msa1351450:three_prime_UTR | 30.0% | |
| ATTCCAGTTCTTATCCATAA+GGG | - | tig0012275:95657-95676 | Msa1351450:three_prime_UTR | 30.0% | |
| ! | ATAAAGATGGACTCAGAAAT+TGG | + | tig0012275:95687-95706 | None:intergenic | 30.0% |
| TTGAGTATATTGATGAGGTT+TGG | - | tig0012275:95709-95728 | Msa1351450:three_prime_UTR | 30.0% | |
| ! | AGAAAACTCAAGCAAGATTT+TGG | - | tig0012275:95769-95788 | Msa1351450:three_prime_UTR | 30.0% |
| ! | GAAAACTCAAGCAAGATTTT+GGG | - | tig0012275:95770-95789 | Msa1351450:three_prime_UTR | 30.0% |
| ! | AAAACTCAAGCAAGATTTTG+GGG | - | tig0012275:95771-95790 | Msa1351450:three_prime_UTR | 30.0% |
| !!! | ACAAGAAGGTAAGTTTTGTT+AGG | - | tig0012275:95805-95824 | Msa1351450:exon | 30.0% |
| GAATGAGACACAAAAAACTT+TGG | + | tig0012275:95833-95852 | None:intergenic | 30.0% | |
| !!! | GTTTTTTGTGTCTCATTCAA+TGG | - | tig0012275:95835-95854 | Msa1351450:CDS | 30.0% |
| CATATCTTATTAGGAAGGAA+AGG | + | tig0012275:95955-95974 | None:intergenic | 30.0% | |
| GTGTTAAAAAAAATGCAGGT+TGG | - | tig0012275:96085-96104 | Msa1351450:CDS | 30.0% | |
| AAAGAGAGATGAGATTGAAT+TGG | - | tig0012275:96135-96154 | Msa1351450:CDS | 30.0% | |
| ! | TTGTTGTTAACTATAGGAAG+AGG | - | tig0012275:96410-96429 | Msa1351450:intron | 30.0% |
| TATCTTCAAAATTCTCAGGT+CGG | - | tig0012275:96666-96685 | Msa1351450:five_prime_UTR | 30.0% | |
| AAACTGAAACACATAAGTAG+AGG | + | tig0012275:96721-96740 | None:intergenic | 30.0% | |
| AGGGATAAAGTATGAGTACA+AGG | - | tig0012275:95575-95594 | Msa1351450:three_prime_UTR | 35.0% | |
| TTTCCCTTATGGATAAGAAC+TGG | + | tig0012275:95663-95682 | None:intergenic | 35.0% | |
| !!! | CAGAAATTGGTTTTCCCTTA+TGG | + | tig0012275:95674-95693 | None:intergenic | 35.0% |
| GTATATTGATGAGGTTTGGA+AGG | - | tig0012275:95713-95732 | Msa1351450:three_prime_UTR | 35.0% | |
| ! | GTTTTCTCATAAGGATCTGA+GGG | + | tig0012275:95756-95775 | None:intergenic | 35.0% |
| ! | AGTTTTCTCATAAGGATCTG+AGG | + | tig0012275:95757-95776 | None:intergenic | 35.0% |
| ! | CTTGCTTGAGTTTTCTCATA+AGG | + | tig0012275:95765-95784 | None:intergenic | 35.0% |
| TGAGATTGAATTGGCAAAGA+AGG | - | tig0012275:96144-96163 | Msa1351450:CDS | 35.0% | |
| AAGGAATTAGAGAATGTGCT+TGG | - | tig0012275:96184-96203 | Msa1351450:intron | 35.0% | |
| AATGTGTCACCACCAAAATA+AGG | + | tig0012275:96217-96236 | None:intergenic | 35.0% | |
| !!! | TATTTTGGTGGTGACACATT+TGG | - | tig0012275:96217-96236 | Msa1351450:intron | 35.0% |
| !!! | ATTTTGGTGGTGACACATTT+GGG | - | tig0012275:96218-96237 | Msa1351450:intron | 35.0% |
| ! | CTTTGATCCCTTTTCATAGT+TGG | - | tig0012275:96254-96273 | Msa1351450:intron | 35.0% |
| ATTATGCGACTTCAAAGTTG+AGG | - | tig0012275:96294-96313 | Msa1351450:intron | 35.0% | |
| AGTGTGATAAACTGATTGCA+TGG | - | tig0012275:96320-96339 | Msa1351450:intron | 35.0% | |
| GTGTGATAAACTGATTGCAT+GGG | - | tig0012275:96321-96340 | Msa1351450:intron | 35.0% | |
| ! | CTCTGAGAAATTGAACTTGT+TGG | - | tig0012275:96462-96481 | Msa1351450:CDS | 35.0% |
| ! | TATTGGACCAAAGCACTAAT+AGG | + | tig0012275:96529-96548 | None:intergenic | 35.0% |
| GACAAGATGACAATAGTCAT+TGG | + | tig0012275:96744-96763 | None:intergenic | 35.0% | |
| AGGGATAAAGTATGAGTACA+AGG | - | tig0012275:95575-95594 | Msa1351450:three_prime_UTR | 35.0% | |
| TTTCCCTTATGGATAAGAAC+TGG | + | tig0012275:95663-95682 | None:intergenic | 35.0% | |
| !!! | CAGAAATTGGTTTTCCCTTA+TGG | + | tig0012275:95674-95693 | None:intergenic | 35.0% |
| GTATATTGATGAGGTTTGGA+AGG | - | tig0012275:95713-95732 | Msa1351450:three_prime_UTR | 35.0% | |
| ! | GTTTTCTCATAAGGATCTGA+GGG | + | tig0012275:95756-95775 | None:intergenic | 35.0% |
| ! | AGTTTTCTCATAAGGATCTG+AGG | + | tig0012275:95757-95776 | None:intergenic | 35.0% |
| ! | CTTGCTTGAGTTTTCTCATA+AGG | + | tig0012275:95765-95784 | None:intergenic | 35.0% |
| TGAGATTGAATTGGCAAAGA+AGG | - | tig0012275:96144-96163 | Msa1351450:CDS | 35.0% | |
| AAGGAATTAGAGAATGTGCT+TGG | - | tig0012275:96184-96203 | Msa1351450:intron | 35.0% | |
| AATGTGTCACCACCAAAATA+AGG | + | tig0012275:96217-96236 | None:intergenic | 35.0% | |
| !!! | TATTTTGGTGGTGACACATT+TGG | - | tig0012275:96217-96236 | Msa1351450:intron | 35.0% |
| !!! | ATTTTGGTGGTGACACATTT+GGG | - | tig0012275:96218-96237 | Msa1351450:intron | 35.0% |
| ! | CTTTGATCCCTTTTCATAGT+TGG | - | tig0012275:96254-96273 | Msa1351450:intron | 35.0% |
| ATTATGCGACTTCAAAGTTG+AGG | - | tig0012275:96294-96313 | Msa1351450:intron | 35.0% | |
| AGTGTGATAAACTGATTGCA+TGG | - | tig0012275:96320-96339 | Msa1351450:intron | 35.0% | |
| GTGTGATAAACTGATTGCAT+GGG | - | tig0012275:96321-96340 | Msa1351450:intron | 35.0% | |
| ! | CTCTGAGAAATTGAACTTGT+TGG | - | tig0012275:96462-96481 | Msa1351450:CDS | 35.0% |
| ! | TATTGGACCAAAGCACTAAT+AGG | + | tig0012275:96529-96548 | None:intergenic | 35.0% |
| GACAAGATGACAATAGTCAT+TGG | + | tig0012275:96744-96763 | None:intergenic | 35.0% | |
| !!! | CTATCCTTGTTTTGAGAGCA+AGG | - | tig0012275:95535-95554 | Msa1351450:three_prime_UTR | 40.0% |
| CTATCCTTGCTCTCAAAACA+AGG | + | tig0012275:95542-95561 | None:intergenic | 40.0% | |
| TTTGAGAGCAAGGATAGCAT+TGG | - | tig0012275:95545-95564 | Msa1351450:three_prime_UTR | 40.0% | |
| !! | AGGATAGCATTGGCTGAAAA+AGG | - | tig0012275:95555-95574 | Msa1351450:three_prime_UTR | 40.0% |
| !! | GGATAGCATTGGCTGAAAAA+GGG | - | tig0012275:95556-95575 | Msa1351450:three_prime_UTR | 40.0% |
| TGATGAGGTTTGGAAGGATA+AGG | - | tig0012275:95719-95738 | Msa1351450:three_prime_UTR | 40.0% | |
| TAAGGATCTGAGGGTAGAAA+TGG | + | tig0012275:95747-95766 | None:intergenic | 40.0% | |
| ! | GGGTGATTTTGTCAACAAGA+AGG | - | tig0012275:95791-95810 | Msa1351450:three_prime_UTR | 40.0% |
| !! | AAAATGCAGGTTGGTGATGT+TGG | - | tig0012275:96094-96113 | Msa1351450:CDS | 40.0% |
| TGATGTTGGAGGAAGGATAT+GGG | - | tig0012275:96108-96127 | Msa1351450:CDS | 40.0% | |
| ! | GCAAAGAAGGAGTTGATTGA+AGG | - | tig0012275:96157-96176 | Msa1351450:intron | 40.0% |
| ! | GGAGTTGATTGAAGGCTTAA+AGG | - | tig0012275:96165-96184 | Msa1351450:intron | 40.0% |
| !!! | CTTGGAGACAAGCCTTATTT+TGG | - | tig0012275:96202-96221 | Msa1351450:intron | 40.0% |
| CTATAGGAAGAGGTTAGAGT+TGG | - | tig0012275:96420-96439 | Msa1351450:intron | 40.0% | |
| GGTTGTTCCTATTAGTGCTT+TGG | - | tig0012275:96519-96538 | Msa1351450:CDS | 40.0% | |
| !!! | CTATCCTTGTTTTGAGAGCA+AGG | - | tig0012275:95535-95554 | Msa1351450:three_prime_UTR | 40.0% |
| CTATCCTTGCTCTCAAAACA+AGG | + | tig0012275:95542-95561 | None:intergenic | 40.0% | |
| TTTGAGAGCAAGGATAGCAT+TGG | - | tig0012275:95545-95564 | Msa1351450:three_prime_UTR | 40.0% | |
| !! | AGGATAGCATTGGCTGAAAA+AGG | - | tig0012275:95555-95574 | Msa1351450:three_prime_UTR | 40.0% |
| !! | GGATAGCATTGGCTGAAAAA+GGG | - | tig0012275:95556-95575 | Msa1351450:three_prime_UTR | 40.0% |
| TGATGAGGTTTGGAAGGATA+AGG | - | tig0012275:95719-95738 | Msa1351450:three_prime_UTR | 40.0% | |
| TAAGGATCTGAGGGTAGAAA+TGG | + | tig0012275:95747-95766 | None:intergenic | 40.0% | |
| ! | GGGTGATTTTGTCAACAAGA+AGG | - | tig0012275:95791-95810 | Msa1351450:three_prime_UTR | 40.0% |
| !! | AAAATGCAGGTTGGTGATGT+TGG | - | tig0012275:96094-96113 | Msa1351450:CDS | 40.0% |
| TGATGTTGGAGGAAGGATAT+GGG | - | tig0012275:96108-96127 | Msa1351450:CDS | 40.0% | |
| ! | GCAAAGAAGGAGTTGATTGA+AGG | - | tig0012275:96157-96176 | Msa1351450:intron | 40.0% |
| ! | GGAGTTGATTGAAGGCTTAA+AGG | - | tig0012275:96165-96184 | Msa1351450:intron | 40.0% |
| !!! | CTTGGAGACAAGCCTTATTT+TGG | - | tig0012275:96202-96221 | Msa1351450:intron | 40.0% |
| CTATAGGAAGAGGTTAGAGT+TGG | - | tig0012275:96420-96439 | Msa1351450:intron | 40.0% | |
| GGTTGTTCCTATTAGTGCTT+TGG | - | tig0012275:96519-96538 | Msa1351450:CDS | 40.0% | |
| GTGATGTTGGAGGAAGGATA+TGG | - | tig0012275:96107-96126 | Msa1351450:CDS | 45.0% | |
| !!! | GGAGACAAGCCTTATTTTGG+TGG | - | tig0012275:96205-96224 | Msa1351450:intron | 45.0% |
| GTGATGTTGGAGGAAGGATA+TGG | - | tig0012275:96107-96126 | Msa1351450:CDS | 45.0% | |
| !!! | GGAGACAAGCCTTATTTTGG+TGG | - | tig0012275:96205-96224 | Msa1351450:intron | 45.0% |
| !! | ATGCAGGTTGGTGATGTTGG+AGG | - | tig0012275:96097-96116 | Msa1351450:CDS | 50.0% |
| !! | AGGTTGGTGATGTTGGAGGA+AGG | - | tig0012275:96101-96120 | Msa1351450:CDS | 50.0% |
| !! | ATGCAGGTTGGTGATGTTGG+AGG | - | tig0012275:96097-96116 | Msa1351450:CDS | 50.0% |
| !! | AGGTTGGTGATGTTGGAGGA+AGG | - | tig0012275:96101-96120 | Msa1351450:CDS | 50.0% |
| GTTGGAGGAAGGATATGGGC+TGG | - | tig0012275:96112-96131 | Msa1351450:CDS | 55.0% | |
| GTTGGAGGAAGGATATGGGC+TGG | - | tig0012275:96112-96131 | Msa1351450:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0012275 | gene | 95486 | 96780 | 95486 | ID=Msa1351450;Name=Msa1351450 |
| tig0012275 | mRNA | 95486 | 96780 | 95486 | ID=Msa1351450-mRNA-1;Parent=Msa1351450;Name=Msa1351450-mRNA-1;_AED=0.03;_eAED=0.03;_QI=138|1|1|1|1|1|2|333|177 |
| tig0012275 | exon | 95486 | 96163 | 95486 | ID=Msa1351450-mRNA-1:exon:7745;Parent=Msa1351450-mRNA-1 |
| tig0012275 | exon | 96454 | 96780 | 96454 | ID=Msa1351450-mRNA-1:exon:7744;Parent=Msa1351450-mRNA-1 |
| tig0012275 | five_prime_UTR | 96643 | 96780 | 96643 | ID=Msa1351450-mRNA-1:five_prime_utr;Parent=Msa1351450-mRNA-1 |
| tig0012275 | CDS | 96454 | 96642 | 96454 | ID=Msa1351450-mRNA-1:cds;Parent=Msa1351450-mRNA-1 |
| tig0012275 | CDS | 95819 | 96163 | 95819 | ID=Msa1351450-mRNA-1:cds;Parent=Msa1351450-mRNA-1 |
| tig0012275 | three_prime_UTR | 95486 | 95818 | 95486 | ID=Msa1351450-mRNA-1:three_prime_utr;Parent=Msa1351450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
