AlfalfaGEDB | Msa0101590

M. sativa cultivar zhongmu-4 / Msa0101590

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF02362.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0101590	sp\|Q8S2E6\|Y1235_ORYSJ	36.538	104	62	1	63	166	279	378	8.39e-15	74.7

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0101590	I3T7I8	85.930	199	12	1	2	184	33	231	3.06e-121	351

TFs/TRs:

Gene ID	Type	Classification
Msa0101590	TF	B3

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0101590	0.802203	6.270366e-49	-8.615850e-47
Msa0006070	Msa0101590	0.803688	3.093232e-49	-8.615850e-47
Msa0011960	Msa0101590	0.834971	2.200814e-56	-8.615850e-47
Msa0015610	Msa0101590	0.815616	8.439523e-52	-8.615850e-47
Msa0017510	Msa0101590	0.805552	1.263280e-49	-8.615850e-47
Msa0027770	Msa0101590	0.809590	1.755133e-50	-8.615850e-47
Msa0032430	Msa0101590	0.803368	3.604536e-49	-8.615850e-47
Msa0037700	Msa0101590	0.803800	2.932298e-49	-8.615850e-47
Msa0054480	Msa0101590	0.824054	9.933661e-54	-8.615850e-47
Msa0061080	Msa0101590	0.812551	4.005084e-51	-8.615850e-47
Msa0078900	Msa0101590	0.804214	2.404657e-49	-8.615850e-47
Msa0089630	Msa0101590	0.815894	7.315017e-52	-8.615850e-47
Msa0090360	Msa0101590	0.849371	3.374831e-60	-8.615850e-47
Msa0101590	Msa0101700	0.836522	8.905908e-57	-8.615850e-47
Msa0101590	Msa0105620	0.830644	2.614806e-55	-8.615850e-47
Msa0101590	Msa0123360	0.855621	5.578154e-62	-8.615850e-47
Msa0101590	Msa0127650	0.809283	2.042382e-50	-8.615850e-47
Msa0101590	Msa0137840	0.836930	7.012555e-57	-8.615850e-47
Msa0101590	Msa0145440	0.925270	2.303661e-90	-8.615850e-47
Msa0101590	Msa0150820	0.816033	6.813651e-52	-8.615850e-47
Msa0101590	Msa0157290	0.805337	1.401838e-49	-8.615850e-47
Msa0101590	Msa0159170	0.806567	7.725669e-50	-8.615850e-47
Msa0101590	Msa0160550	0.846732	1.804951e-59	-8.615850e-47
Msa0101590	Msa0168230	0.833324	5.692336e-56	-8.615850e-47
Msa0101590	Msa0171540	0.801094	1.059044e-48	-8.615850e-47
Msa0101590	Msa0175780	0.824465	7.953537e-54	-8.615850e-47
Msa0101590	Msa0184040	0.847311	1.253466e-59	-8.615850e-47
Msa0101590	Msa0211150	0.805348	1.394045e-49	-8.615850e-47
Msa0101590	Msa0224810	0.820559	6.435837e-53	-8.615850e-47
Msa0101590	Msa0229230	0.804275	2.336013e-49	-8.615850e-47
Msa0101590	Msa0241390	0.825596	4.299326e-54	-8.615850e-47
Msa0101590	Msa0260680	0.812600	3.907228e-51	-8.615850e-47
Msa0101590	Msa0264150	0.807403	5.142555e-50	-8.615850e-47
Msa0101590	Msa0279220	0.842169	3.047338e-58	-8.615850e-47
Msa0101590	Msa0279240	0.811819	5.784147e-51	-8.615850e-47
Msa0101590	Msa0279700	0.806336	8.644357e-50	-8.615850e-47
Msa0101590	Msa0280090	0.819036	1.434020e-52	-8.615850e-47
Msa0101590	Msa0309770	0.821789	3.348835e-53	-8.615850e-47
Msa0101590	Msa0318980	0.841883	3.626844e-58	-8.615850e-47
Msa0101590	Msa0336420	0.818270	2.139450e-52	-8.615850e-47
Msa0101590	Msa0337620	0.802630	5.122054e-49	-8.615850e-47
Msa0101590	Msa0345970	0.807952	3.931208e-50	-8.615850e-47
Msa0101590	Msa0352330	0.800787	1.223487e-48	-8.615850e-47
Msa0101590	Msa0383800	0.816441	5.521753e-52	-8.615850e-47
Msa0101590	Msa0388700	0.829223	5.803911e-55	-8.615850e-47
Msa0101590	Msa0393080	0.803597	3.231883e-49	-8.615850e-47
Msa0101590	Msa0398710	0.809411	1.917392e-50	-8.615850e-47
Msa0101590	Msa0399340	0.808950	2.407639e-50	-8.615850e-47
Msa0101590	Msa0402650	0.837940	3.864060e-57	-8.615850e-47
Msa0101590	Msa0402790	0.818038	2.414302e-52	-8.615850e-47
Msa0101590	Msa0410650	0.808758	2.646054e-50	-8.615850e-47
Msa0101590	Msa0422400	0.801378	9.264158e-49	-8.615850e-47
Msa0101590	Msa0428020	0.825967	3.510564e-54	-8.615850e-47
Msa0101590	Msa0428590	0.800323	1.520702e-48	-8.615850e-47
Msa0101590	Msa0440750	0.811405	7.118420e-51	-8.615850e-47
Msa0101590	Msa0449210	0.823898	1.080814e-53	-8.615850e-47
Msa0101590	Msa0479660	0.803669	3.122217e-49	-8.615850e-47
Msa0101590	Msa0481530	0.847323	1.243526e-59	-8.615850e-47
Msa0101590	Msa0483850	0.808177	3.520662e-50	-8.615850e-47
Msa0101590	Msa0484720	0.803320	3.687790e-49	-8.615850e-47
Msa0101590	Msa0487420	0.814943	1.190751e-51	-8.615850e-47
Msa0101590	Msa0493410	0.808803	2.588271e-50	-8.615850e-47
Msa0101590	Msa0497490	0.825561	4.384071e-54	-8.615850e-47
Msa0101590	Msa0500360	0.809448	1.882595e-50	-8.615850e-47
Msa0101590	Msa0507680	0.807854	4.125001e-50	-8.615850e-47
Msa0101590	Msa0519740	0.825328	4.978425e-54	-8.615850e-47
Msa0101590	Msa0529890	0.836446	9.314947e-57	-8.615850e-47
Msa0101590	Msa0542520	0.801395	9.188513e-49	-8.615850e-47
Msa0101590	Msa0548240	0.806879	6.639648e-50	-8.615850e-47
Msa0101590	Msa0556060	0.811436	7.007450e-51	-8.615850e-47
Msa0101590	Msa0585560	0.838505	2.762856e-57	-8.615850e-47
Msa0101590	Msa0597330	0.805643	1.208864e-49	-8.615850e-47
Msa0101590	Msa0602240	0.814493	1.498039e-51	-8.615850e-47
Msa0101590	Msa0602250	0.809969	1.455148e-50	-8.615850e-47
Msa0101590	Msa0607050	0.856760	2.587421e-62	-8.615850e-47
Msa0101590	Msa0607910	0.800355	1.498593e-48	-8.615850e-47
Msa0101590	Msa0610430	0.828730	7.641292e-55	-8.615850e-47
Msa0101590	Msa0615710	0.805642	1.209844e-49	-8.615850e-47
Msa0101590	Msa0623790	0.822549	2.232423e-53	-8.615850e-47
Msa0101590	Msa0625720	0.835077	2.070378e-56	-8.615850e-47
Msa0101590	Msa0643560	0.814144	1.788755e-51	-8.615850e-47
Msa0101590	Msa0647500	0.820906	5.354479e-53	-8.615850e-47
Msa0101590	Msa0649490	0.811673	6.224174e-51	-8.615850e-47
Msa0101590	Msa0663390	0.846366	2.272729e-59	-8.615850e-47
Msa0101590	Msa0682620	0.803808	2.921038e-49	-8.615850e-47
Msa0101590	Msa0689260	0.830062	3.628551e-55	-8.615850e-47
Msa0101590	Msa0690150	0.847058	1.469957e-59	-8.615850e-47
Msa0101590	Msa0690860	0.828868	7.078308e-55	-8.615850e-47
Msa0101590	Msa0692830	0.841492	4.598091e-58	-8.615850e-47
Msa0101590	Msa0692950	0.842543	2.424989e-58	-8.615850e-47
Msa0101590	Msa0695100	0.801921	7.168147e-49	-8.615850e-47
Msa0101590	Msa0709400	0.828876	7.043606e-55	-8.615850e-47
Msa0101590	Msa0711780	0.844583	6.909055e-59	-8.615850e-47
Msa0101590	Msa0715700	0.821334	4.266673e-53	-8.615850e-47
Msa0101590	Msa0727550	0.820001	8.638877e-53	-8.615850e-47
Msa0101590	Msa0757830	0.805462	1.319615e-49	-8.615850e-47
Msa0101590	Msa0762970	0.805035	1.621219e-49	-8.615850e-47
Msa0101590	Msa0788850	0.836442	9.335167e-57	-8.615850e-47
Msa0101590	Msa0794670	0.850582	1.546842e-60	-8.615850e-47
Msa0101590	Msa0808270	0.814154	1.780109e-51	-8.615850e-47
Msa0101590	Msa0867220	0.975259	1.260290e-139	-8.615850e-47
Msa0101590	Msa0871270	0.807839	4.155268e-50	-8.615850e-47
Msa0101590	Msa0876810	0.805636	1.213008e-49	-8.615850e-47
Msa0101590	Msa0938220	0.809603	1.743565e-50	-8.615850e-47
Msa0101590	Msa0968590	0.805566	1.254846e-49	-8.615850e-47
Msa0101590	Msa0968680	0.818086	2.354568e-52	-8.615850e-47
Msa0101590	Msa0975340	0.804230	2.386389e-49	-8.615850e-47
Msa0101590	Msa1013400	0.803997	2.668503e-49	-8.615850e-47
Msa0101590	Msa1014540	0.807213	5.642308e-50	-8.615850e-47
Msa0101590	Msa1023120	0.801080	1.065978e-48	-8.615850e-47
Msa0101590	Msa1023920	0.801194	1.010305e-48	-8.615850e-47
Msa0101590	Msa1051200	0.826944	2.053824e-54	-8.615850e-47
Msa0101590	Msa1081980	0.815558	8.694035e-52	-8.615850e-47
Msa0101590	Msa1085200	0.811728	6.053867e-51	-8.615850e-47
Msa0101590	Msa1106700	0.803530	3.335594e-49	-8.615850e-47
Msa0101590	Msa1124960	0.824119	9.594637e-54	-8.615850e-47
Msa0101590	Msa1137700	0.806860	6.698704e-50	-8.615850e-47
Msa0101590	Msa1160590	0.826925	2.075883e-54	-8.615850e-47
Msa0101590	Msa1162270	0.828414	9.112905e-55	-8.615850e-47
Msa0101590	Msa1165940	0.800230	1.588793e-48	-8.615850e-47
Msa0101590	Msa1167340	0.810093	1.367852e-50	-8.615850e-47
Msa0101590	Msa1181250	0.808813	2.574859e-50	-8.615850e-47
Msa0101590	Msa1204530	0.820983	5.139911e-53	-8.615850e-47
Msa0101590	Msa1208880	0.814580	1.432864e-51	-8.615850e-47
Msa0101590	Msa1209460	0.816936	4.277141e-52	-8.615850e-47
Msa0101590	Msa1211890	0.847933	8.451450e-60	-8.615850e-47
Msa0101590	Msa1225700	0.817258	3.619337e-52	-8.615850e-47
Msa0101590	Msa1233910	0.811340	7.351002e-51	-8.615850e-47
Msa0101590	Msa1245930	0.810452	1.144472e-50	-8.615850e-47
Msa0101590	Msa1256250	0.824156	9.400579e-54	-8.615850e-47
Msa0101590	Msa1259060	0.803350	3.635002e-49	-8.615850e-47
Msa0101590	Msa1263750	0.806352	8.574711e-50	-8.615850e-47
Msa0101590	Msa1267430	0.816112	6.540486e-52	-8.615850e-47
Msa0101590	Msa1296760	0.823083	1.676297e-53	-8.615850e-47
Msa0101590	Msa1331000	0.807482	4.947119e-50	-8.615850e-47
Msa0101590	Msa1358250	0.832241	1.057599e-55	-8.615850e-47
Msa0101590	Msa1375170	0.808609	2.846815e-50	-8.615850e-47
Msa0101590	Msa1382560	0.800635	1.313687e-48	-8.615850e-47
Msa0101590	Msa1386780	0.856412	3.274812e-62	-8.615850e-47
Msa0101590	Msa1392780	0.814690	1.354657e-51	-8.615850e-47
Msa0101590	Msa1399550	0.845794	3.251938e-59	-8.615850e-47
Msa0101590	Msa1403680	0.822060	2.898876e-53	-8.615850e-47
Msa0101590	Msa1419870	0.808146	3.575049e-50	-8.615850e-47
Msa0101590	Msa1424750	0.810731	9.960995e-51	-8.615850e-47
Msa0101590	Msa1432420	0.866813	2.167409e-65	-8.615850e-47
Msa0101590	Msa1433390	0.851377	9.235763e-61	-8.615850e-47
Msa0101590	Msa1439550	0.828166	1.045623e-54	-8.615850e-47
Msa0101590	Msa1452240	0.805324	1.410513e-49	-8.615850e-47
Msa0101590	Msa1454480	0.825472	4.600496e-54	-8.615850e-47
Msa0101590	Msa1457920	0.823384	1.426006e-53	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0101590	MtrunA17_Chr1g0154171	86.000	200	12	1	1	184	161	360	1.47e-123	352
Msa0101590	MtrunA17_Chr1g0154161	67.204	186	44	2	17	185	140	325	1.18e-83	250
Msa0101590	MtrunA17_Chr1g0154191	60.849	212	50	4	1	185	167	372	7.29e-81	244
Msa0101590	MtrunA17_Chr1g0154151	62.176	193	48	6	2	177	139	323	1.06e-72	222
Msa0101590	MtrunA17_Chr1g0154041	54.595	185	74	2	11	185	412	596	4.64e-58	191
Msa0101590	MtrunA17_Chr1g0154041	54.310	116	53	0	63	178	245	360	1.36e-37	136
Msa0101590	MtrunA17_Chr1g0154101	57.317	164	64	2	19	181	681	839	2.29e-54	184
Msa0101590	MtrunA17_Chr1g0154101	45.813	203	76	2	11	180	412	613	3.84e-48	167
Msa0101590	MtrunA17_Chr1g0154211	48.500	200	77	3	4	178	197	395	1.58e-53	175
Msa0101590	MtrunA17_Chr1g0154111	45.918	196	73	3	9	176	177	367	2.49e-48	165
Msa0101590	MtrunA17_Chr1g0154111	64.179	67	24	0	1	67	510	576	8.68e-20	85.9
Msa0101590	MtrunA17_Chr1g0154131	51.534	163	70	4	12	171	316	472	1.13e-47	161
Msa0101590	MtrunA17_Chr1g0154071	50.862	116	56	1	59	173	376	491	1.01e-32	122
Msa0101590	MtrunA17_Chr1g0154121	41.000	100	48	2	97	185	2	101	4.20e-20	80.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 65 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTGATGCAGGTTCATATATT+TGG	0.071470	1_3:+8230549	Msa0101590:CDS
CAACTCCACTAGGACCTTTA+AGG	0.178570	1_3:-8228346	None:intergenic
CTTCTTCTTGGTCCTCTTGC+TGG	0.214523	1_3:-8228714	None:intergenic
CGTGATAATGGCATCAATTT+TGG	0.226290	1_3:+8230492	Msa0101590:CDS
CCAGAAAATGTGACCCTTAA+AGG	0.236805	1_3:+8228332	Msa0101590:five_prime_UTR
TGATGCAGGTTCATATATTT+GGG	0.266594	1_3:+8230550	Msa0101590:CDS
ATAACCTTTGTTCGTGATAA+TGG	0.267989	1_3:+8230480	Msa0101590:CDS
TTTGAGGTCTTAATCTTTGA+TGG	0.272020	1_3:+8228497	Msa0101590:five_prime_UTR
TTCTTTAACAGGCTTCTTCT+TGG	0.292612	1_3:-8228726	None:intergenic
CACAAGTCTCACAAGTTATC+AGG	0.302645	1_3:-8230615	None:intergenic
AGTGGAGTTGTGTGGGATAT+TGG	0.305311	1_3:+8228359	Msa0101590:five_prime_UTR
TGCTTCCCCTGAGCAGTTCA+TGG	0.329585	1_3:+8228643	Msa0101590:exon
GAAAGTATTGACAATCAAAA+TGG	0.330748	1_3:+8230582	Msa0101590:CDS
ACAGGTGTAACTTCTTTAAC+AGG	0.338513	1_3:-8228737	None:intergenic
GTCTTCCCCTCTTCTTAGTC+TGG	0.373579	1_3:-8228760	None:intergenic
GTGGAGTTGTGTGGGATATT+GGG	0.385625	1_3:+8228360	Msa0101590:five_prime_UTR
CCCCTCTTCTTAGTCTGGAC+AGG	0.389132	1_3:-8228755	None:intergenic
ATGTAATTCATTACTGCTAC+TGG	0.394535	1_3:-8230810	None:intergenic
AGCATTCCTCGTTTAGCATA+TGG	0.394544	1_3:-8230435	None:intergenic
GAAAAGAGGAAGTAAATGAT+TGG	0.401129	1_3:-8230158	None:intergenic
GCATTCCTCGTTTAGCATAT+GGG	0.423038	1_3:-8230434	None:intergenic
GCATCAGCCATGAACTGCTC+AGG	0.438299	1_3:-8228650	None:intergenic
TTTAACAAAATATGGAAAAG+AGG	0.455186	1_3:-8230172	None:intergenic
TGTTTCTGATTATGTGATGC+AGG	0.475973	1_3:+8230536	Msa0101590:CDS
AACTCCACTAGGACCTTTAA+GGG	0.479312	1_3:-8228345	None:intergenic
TGAGAGATCACATGATTTGG+TGG	0.481299	1_3:+8228805	Msa0101590:CDS
AGCATATGGGACTGAGTTCA+CGG	0.484588	1_3:-8230421	None:intergenic
CAGGTTCATATATTTGGGGC+TGG	0.486068	1_3:+8230555	Msa0101590:CDS
TTCCTTGTCTTTAAGTACAA+TGG	0.496096	1_3:+8228464	Msa0101590:five_prime_UTR
AAAAGAGGAAGTAAATGATT+GGG	0.501391	1_3:-8230157	None:intergenic
CAATGGTGAATCACTCTTTG+AGG	0.502205	1_3:+8228481	Msa0101590:five_prime_UTR
GTTTGTAACAAGGAACTCTC+AGG	0.504568	1_3:+8228827	Msa0101590:CDS
TCATATATTTGGGGCTGGAA+AGG	0.506411	1_3:+8230560	Msa0101590:CDS
AGATGATACTGTTTACTTCA+CGG	0.508557	1_3:+8228394	Msa0101590:five_prime_UTR
GAAATTCAAGAGGCGAATGT+TGG	0.522916	1_3:+8230397	Msa0101590:CDS
TGATTTGGTGGTTTGTAACA+AGG	0.529689	1_3:+8228817	Msa0101590:CDS
CATCAGCCATGAACTGCTCA+GGG	0.531256	1_3:-8228649	None:intergenic
CTGTTTACTTCACGGACGGT+TGG	0.547363	1_3:+8228402	Msa0101590:five_prime_UTR
ATATCCCACACAACTCCACT+AGG	0.550354	1_3:-8228356	None:intergenic
CACCATTGTACTTAAAGACA+AGG	0.554483	1_3:-8228466	None:intergenic
AAGGTCCTAGTGGAGTTGTG+TGG	0.558725	1_3:+8228351	Msa0101590:five_prime_UTR
AACTGAACAAGGGGATAGCA+AGG	0.567712	1_3:+8228577	Msa0101590:five_prime_UTR
TGTTGGTGGTTCGCGTACAC+TGG	0.571952	1_3:+8230212	Msa0101590:CDS
ACCTGTCCAGACTAAGAAGA+GGG	0.576873	1_3:+8228754	Msa0101590:CDS
GGACATGCTCAAACTGAACA+AGG	0.584733	1_3:+8228566	Msa0101590:five_prime_UTR
AGGTCCTAGTGGAGTTGTGT+GGG	0.591978	1_3:+8228352	Msa0101590:five_prime_UTR
GATGCCATTATCACGAACAA+AGG	0.595838	1_3:-8230484	None:intergenic
GTTACGCTTCGAAATTCAAG+AGG	0.604672	1_3:+8230387	Msa0101590:CDS
CACTAAGACCACACCTGTAG+CGG	0.612134	1_3:+8228676	Msa0101590:CDS
GAAGGGAACCGCTACAGGTG+TGG	0.625138	1_3:-8228684	None:intergenic
GTGACCCTTAAAGGTCCTAG+TGG	0.630968	1_3:+8228341	Msa0101590:five_prime_UTR
ACAAGGGGATAGCAAGGCAA+AGG	0.631522	1_3:+8228583	Msa0101590:five_prime_UTR
GATACTGTTTACTTCACGGA+CGG	0.631641	1_3:+8228398	Msa0101590:five_prime_UTR
CACCTGTCCAGACTAAGAAG+AGG	0.632249	1_3:+8228753	Msa0101590:CDS
ACATGCTCAAACTGAACAAG+GGG	0.633900	1_3:+8228568	Msa0101590:five_prime_UTR
GACATGCTCAAACTGAACAA+GGG	0.641869	1_3:+8228567	Msa0101590:five_prime_UTR
GTGCAGCAGTGAAACGACGC+GGG	0.645296	1_3:-8230341	None:intergenic
TCAGTAGCAAACACTAGCAG+TGG	0.651568	1_3:+8230782	Msa0101590:three_prime_UTR
GTGTTGTATCTTACAACTAG+CGG	0.654004	1_3:+8230662	Msa0101590:three_prime_UTR
AGACTTGTGCATCTTATGCA+TGG	0.655225	1_3:+8230629	Msa0101590:exon
GATGCAGGTTCATATATTTG+GGG	0.679497	1_3:+8230551	Msa0101590:CDS
ATCAGCCATGAACTGCTCAG+GGG	0.726483	1_3:-8228648	None:intergenic
CCTGTCCAGACTAAGAAGAG+GGG	0.734295	1_3:+8228755	Msa0101590:CDS
TCAGTCCCATATGCTAAACG+AGG	0.734975	1_3:+8230429	Msa0101590:CDS
TGTGCAGCAGTGAAACGACG+CGG	0.757873	1_3:-8230342	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTAAGTATTTTAACAAAATA+TGG	-	chr1_3:8230183-8230202	None:intergenic	10.0%
!!	TTTGTTAAAATACTTAAAAA+CGG	+	chr1_3:8230186-8230205	Msa0101590:CDS	10.0%
!!!	TATTTCTATTTTGTATTAAA+TGG	+	chr1_3:8230841-8230860	Msa0101590:three_prime_UTR	10.0%
!!	AGATTAATAGGAAAAATTAA+GGG	-	chr1_3:8228966-8228985	None:intergenic	15.0%
!!	ATATGAAATAAAAAAAACAG+TGG	-	chr1_3:8230734-8230753	None:intergenic	15.0%
!!!	AAATTGTCTGAAAATGTTTT+AGG	-	chr1_3:8228299-8228318	None:intergenic	20.0%
!!	GAGATTAATAGGAAAAATTA+AGG	-	chr1_3:8228967-8228986	None:intergenic	20.0%
!!!	TTTTCATACATGTTATTGAA+AGG	-	chr1_3:8230008-8230027	None:intergenic	20.0%
!!	TTTAACAAAATATGGAAAAG+AGG	-	chr1_3:8230175-8230194	None:intergenic	20.0%
!!	ACGTAACTTAAAGATAAAAA+GGG	-	chr1_3:8230247-8230266	None:intergenic	20.0%
!!!	TCAAAAGAATTAGCTGTTTT+TGG	-	chr1_3:8228788-8228807	None:intergenic	25.0%
!	AATAGGAAAAATTAAGGGAA+AGG	-	chr1_3:8228961-8228980	None:intergenic	25.0%
!	TGTTTATGTTGAAGATGTTA+TGG	-	chr1_3:8229967-8229986	None:intergenic	25.0%
!	CAATCATGAGTTTGAATAAA+AGG	-	chr1_3:8230071-8230090	None:intergenic	25.0%
!	AAAAGAGGAAGTAAATGATT+GGG	-	chr1_3:8230160-8230179	None:intergenic	25.0%
!	CACGTAACTTAAAGATAAAA+AGG	-	chr1_3:8230248-8230267	None:intergenic	25.0%
!!!	GAAAGTATTGACAATCAAAA+TGG	+	chr1_3:8230582-8230601	Msa0101590:CDS	25.0%
!!	GAATGTACTAATTTTCTACT+AGG	+	chr1_3:8230708-8230727	Msa0101590:three_prime_UTR	25.0%
	AGATGATACTGTTTACTTCA+CGG	+	chr1_3:8228394-8228413	Msa0101590:five_prime_UTR	30.0%
	TTCCTTGTCTTTAAGTACAA+TGG	+	chr1_3:8228464-8228483	Msa0101590:five_prime_UTR	30.0%
!	TTTGAGGTCTTAATCTTTGA+TGG	+	chr1_3:8228497-8228516	Msa0101590:five_prime_UTR	30.0%
!!!	AAGGCAACTTCTTATTTTGT+GGG	+	chr1_3:8228536-8228555	Msa0101590:five_prime_UTR	30.0%
!!!	TCTTATTTTGTGGGAAAATG+TGG	+	chr1_3:8228545-8228564	Msa0101590:five_prime_UTR	30.0%
!!	TTTTGAGAGATCACATGATT+TGG	+	chr1_3:8228802-8228821	Msa0101590:CDS	30.0%
!	TTCACTCTAGAGAGATTAAT+AGG	-	chr1_3:8228978-8228997	None:intergenic	30.0%
	TAGAGTGAAGTAATTGTTAG+CGG	+	chr1_3:8228989-8229008	Msa0101590:intron	30.0%
	TCATACATGTTATTGAAAGG+AGG	-	chr1_3:8230005-8230024	None:intergenic	30.0%
	GAAAAGAGGAAGTAAATGAT+TGG	-	chr1_3:8230161-8230180	None:intergenic	30.0%
	ATACTTAAAAACGGCAATGT+TGG	+	chr1_3:8230195-8230214	Msa0101590:CDS	30.0%
	ATAACCTTTGTTCGTGATAA+TGG	+	chr1_3:8230480-8230499	Msa0101590:CDS	30.0%
	TGATGCAGGTTCATATATTT+GGG	+	chr1_3:8230550-8230569	Msa0101590:CDS	30.0%
	ATGTAATTCATTACTGCTAC+TGG	-	chr1_3:8230813-8230832	None:intergenic	30.0%
	CACCATTGTACTTAAAGACA+AGG	-	chr1_3:8228469-8228488	None:intergenic	35.0%
!	TGGAGATAACTTTTGTGAGA+AGG	+	chr1_3:8228517-8228536	Msa0101590:five_prime_UTR	35.0%
!!!	GAAGGCAACTTCTTATTTTG+TGG	+	chr1_3:8228535-8228554	Msa0101590:five_prime_UTR	35.0%
!!	AACACTTCTGCTTTTAATGC+TGG	+	chr1_3:8228611-8228630	Msa0101590:five_prime_UTR	35.0%
	TTCTTTAACAGGCTTCTTCT+TGG	-	chr1_3:8228729-8228748	None:intergenic	35.0%
	ACAGGTGTAACTTCTTTAAC+AGG	-	chr1_3:8228740-8228759	None:intergenic	35.0%
!!	TGATTTGGTGGTTTGTAACA+AGG	+	chr1_3:8228817-8228836	Msa0101590:CDS	35.0%
	CTCGGTATATAGATAGGAAT+AGG	+	chr1_3:8229168-8229187	Msa0101590:intron	35.0%
	GATTACTGTAACGAATATCG+AGG	-	chr1_3:8229546-8229565	None:intergenic	35.0%
	TCGGTATGTTGAAGATGTTA+TGG	-	chr1_3:8229591-8229610	None:intergenic	35.0%
	GATTACTGTAACGAATATCG+AGG	-	chr1_3:8229546-8229565	None:intergenic	35.0%
!!	AGACAAGTATCAGTTTGCTA+GGG	-	chr1_3:8230044-8230063	None:intergenic	35.0%
!	AAGACAAGTATCAGTTTGCT+AGG	-	chr1_3:8230045-8230064	None:intergenic	35.0%
	CATCCATCATGAAGAGAAAA+AGG	+	chr1_3:8230112-8230131	Msa0101590:intron	35.0%
!	CTTCCTTTTTCTCTTCATGA+TGG	-	chr1_3:8230118-8230137	None:intergenic	35.0%
	CATCATGAAGAGAAAAAGGA+AGG	+	chr1_3:8230116-8230135	Msa0101590:intron	35.0%
!!!	CGTGATAATGGCATCAATTT+TGG	+	chr1_3:8230492-8230511	Msa0101590:CDS	35.0%
!	TGTTTCTGATTATGTGATGC+AGG	+	chr1_3:8230536-8230555	Msa0101590:CDS	35.0%
	GTGATGCAGGTTCATATATT+TGG	+	chr1_3:8230549-8230568	Msa0101590:CDS	35.0%
	GATGCAGGTTCATATATTTG+GGG	+	chr1_3:8230551-8230570	Msa0101590:CDS	35.0%
	GTGTTGTATCTTACAACTAG+CGG	+	chr1_3:8230662-8230681	Msa0101590:three_prime_UTR	35.0%
!!	CCTTTAAGGGTCACATTTTC+TGG	-	chr1_3:8228335-8228354	None:intergenic	40.0%
	CCAGAAAATGTGACCCTTAA+AGG	+	chr1_3:8228332-8228351	Msa0101590:five_prime_UTR	40.0%
	AACTCCACTAGGACCTTTAA+GGG	-	chr1_3:8228348-8228367	None:intergenic	40.0%
	GATACTGTTTACTTCACGGA+CGG	+	chr1_3:8228398-8228417	Msa0101590:five_prime_UTR	40.0%
	CAATGGTGAATCACTCTTTG+AGG	+	chr1_3:8228481-8228500	Msa0101590:five_prime_UTR	40.0%
	GACATGCTCAAACTGAACAA+GGG	+	chr1_3:8228567-8228586	Msa0101590:five_prime_UTR	40.0%
	ACATGCTCAAACTGAACAAG+GGG	+	chr1_3:8228568-8228587	Msa0101590:five_prime_UTR	40.0%
!!!	CTCTTGCTGGTTTTTTGGAA+GGG	-	chr1_3:8228704-8228723	None:intergenic	40.0%
!	TGAGAGATCACATGATTTGG+TGG	+	chr1_3:8228805-8228824	Msa0101590:CDS	40.0%
	GTTTGTAACAAGGAACTCTC+AGG	+	chr1_3:8228827-8228846	Msa0101590:CDS	40.0%
!!	AAATACAAGAGAGCGTTTGC+TGG	-	chr1_3:8228935-8228954	None:intergenic	40.0%
!	GCAAACGCTCTCTTGTATTT+TGG	+	chr1_3:8228935-8228954	Msa0101590:intron	40.0%
	CCTATCTATATACCGAGTGT+TGG	-	chr1_3:8229197-8229216	None:intergenic	40.0%
	CCAACACTCGGTATATAGAT+AGG	+	chr1_3:8229162-8229181	Msa0101590:intron	40.0%
	CCAACACTCGGTATATAGAT+AGG	-	chr1_3:8229162-8229181	None:intergenic	40.0%
	CCTATCTATATACCGAGTGT+TGG	+	chr1_3:8229197-8229216	Msa0101590:intron	40.0%
	CACTCGGTATATAGATAGGA+AGG	-	chr1_3:8229166-8229185	None:intergenic	40.0%
	CCAACACTCGGTATATAGAT+AGG	-	chr1_3:8229162-8229181	None:intergenic	40.0%
	CCTATCTATATACCGAGTGT+TGG	+	chr1_3:8229197-8229216	Msa0101590:intron	40.0%
	CCTATCTATATACCGAGTGT+TGG	-	chr1_3:8229197-8229216	None:intergenic	40.0%
	CCAACACTCGGTATATAGAT+AGG	+	chr1_3:8229162-8229181	Msa0101590:intron	40.0%
	CCAACACTCGGTATATAGAT+AGG	-	chr1_3:8229162-8229181	None:intergenic	40.0%
	CCTATCTATATACCGAGTGT+TGG	+	chr1_3:8229197-8229216	Msa0101590:intron	40.0%
	CACTCGGTATATAGATAGGA+AGG	-	chr1_3:8229166-8229185	None:intergenic	40.0%
	CCAACACTCGGTATATAGAT+AGG	-	chr1_3:8229162-8229181	None:intergenic	40.0%
	CCTATCTATATACCGAGTGT+TGG	+	chr1_3:8229197-8229216	Msa0101590:intron	40.0%
	ATCTTCAACATACCGAGTGT+TGG	+	chr1_3:8229595-8229614	Msa0101590:intron	40.0%
	CACTCGGTATATAGATAGGA+AGG	-	chr1_3:8229166-8229185	None:intergenic	40.0%
	CCAACACTCGGTATATAGAT+AGG	-	chr1_3:8229162-8229181	None:intergenic	40.0%
	CCTATCTATATACCGAGTGT+TGG	+	chr1_3:8229197-8229216	Msa0101590:intron	40.0%
	CCTATCTATATACCGAGTGT+TGG	-	chr1_3:8229197-8229216	None:intergenic	40.0%
	CCAACACTCGGTATATAGAT+AGG	+	chr1_3:8229162-8229181	Msa0101590:intron	40.0%
	CCAACACTCGGTATATAGAT+AGG	-	chr1_3:8229162-8229181	None:intergenic	40.0%
	CCTATCTATATACCGAGTGT+TGG	+	chr1_3:8229197-8229216	Msa0101590:intron	40.0%
	CACTCGGTATATAGATAGGA+AGG	-	chr1_3:8229166-8229185	None:intergenic	40.0%
	CCAACACTCGGTATATAGAT+AGG	-	chr1_3:8229162-8229181	None:intergenic	40.0%
	CCTATCTATATACCGAGTGT+TGG	+	chr1_3:8229197-8229216	Msa0101590:intron	40.0%
	CTTAAAAACGGCAATGTTGG+TGG	+	chr1_3:8230198-8230217	Msa0101590:CDS	40.0%
	TGCTTGACAAACTGATCGTT+TGG	+	chr1_3:8230282-8230301	Msa0101590:intron	40.0%
!	TAACTTCTGTTTTGTCGTCG+GGG	-	chr1_3:8230371-8230390	None:intergenic	40.0%
!	GTAACTTCTGTTTTGTCGTC+GGG	-	chr1_3:8230372-8230391	None:intergenic	40.0%
!	CGTAACTTCTGTTTTGTCGT+CGG	-	chr1_3:8230373-8230392	None:intergenic	40.0%
	GTTACGCTTCGAAATTCAAG+AGG	+	chr1_3:8230387-8230406	Msa0101590:CDS	40.0%
	GAAATTCAAGAGGCGAATGT+TGG	+	chr1_3:8230397-8230416	Msa0101590:CDS	40.0%
	GCATTCCTCGTTTAGCATAT+GGG	-	chr1_3:8230437-8230456	None:intergenic	40.0%
	AGCATTCCTCGTTTAGCATA+TGG	-	chr1_3:8230438-8230457	None:intergenic	40.0%
!	GAATGCTTCACACCTTTTGT+GGG	+	chr1_3:8230451-8230470	Msa0101590:CDS	40.0%
!	AATGCTTCACACCTTTTGTG+GGG	+	chr1_3:8230452-8230471	Msa0101590:CDS	40.0%
	GATGCCATTATCACGAACAA+AGG	-	chr1_3:8230487-8230506	None:intergenic	40.0%
!	TCATATATTTGGGGCTGGAA+AGG	+	chr1_3:8230560-8230579	Msa0101590:CDS	40.0%
	CACAAGTCTCACAAGTTATC+AGG	-	chr1_3:8230618-8230637	None:intergenic	40.0%
	AGACTTGTGCATCTTATGCA+TGG	+	chr1_3:8230629-8230648	Msa0101590:exon	40.0%
	CAACTCCACTAGGACCTTTA+AGG	-	chr1_3:8228349-8228368	None:intergenic	45.0%
	ATATCCCACACAACTCCACT+AGG	-	chr1_3:8228359-8228378	None:intergenic	45.0%
	AGTGGAGTTGTGTGGGATAT+TGG	+	chr1_3:8228359-8228378	Msa0101590:five_prime_UTR	45.0%
	GTGGAGTTGTGTGGGATATT+GGG	+	chr1_3:8228360-8228379	Msa0101590:five_prime_UTR	45.0%
	GGACATGCTCAAACTGAACA+AGG	+	chr1_3:8228566-8228585	Msa0101590:five_prime_UTR	45.0%
	AACTGAACAAGGGGATAGCA+AGG	+	chr1_3:8228577-8228596	Msa0101590:five_prime_UTR	45.0%
!!!	CCTCTTGCTGGTTTTTTGGA+AGG	-	chr1_3:8228705-8228724	None:intergenic	45.0%
	CCTTCCAAAAAACCAGCAAG+AGG	+	chr1_3:8228702-8228721	Msa0101590:CDS	45.0%
!!!	TGGTCCTCTTGCTGGTTTTT+TGG	-	chr1_3:8228709-8228728	None:intergenic	45.0%
	ACCTGTCCAGACTAAGAAGA+GGG	+	chr1_3:8228754-8228773	Msa0101590:CDS	45.0%
	TGGCAAGTTAGCTAGAGAGA+GGG	-	chr1_3:8228915-8228934	None:intergenic	45.0%
	GACTAAATCCCACTGAGTGT+TGG	-	chr1_3:8229015-8229034	None:intergenic	45.0%
	TAGATAGGAAGGCCAACACT+CGG	-	chr1_3:8229212-8229231	None:intergenic	45.0%
!!	TAAATCCCACCGAGTGTTGA+GGG	-	chr1_3:8229263-8229282	None:intergenic	45.0%
	TAGATAGGAAGGCCAACACT+CGG	-	chr1_3:8229212-8229231	None:intergenic	45.0%
!!	TAAATCCCACCGAGTGTTGA+GGG	-	chr1_3:8229263-8229282	None:intergenic	45.0%
!!	TGTGAGGAGTGTTTCTCGTT+GGG	-	chr1_3:8229468-8229487	None:intergenic	45.0%
!!	ACAGTACAAGCCGGTTTTGT+AGG	+	chr1_3:8229485-8229504	Msa0101590:intron	45.0%
!!	CAGTACAAGCCGGTTTTGTA+GGG	+	chr1_3:8229486-8229505	Msa0101590:intron	45.0%
	AGTGCCTCGATATTCGTTGT+AGG	+	chr1_3:8229512-8229531	Msa0101590:intron	45.0%
	GTGCCTCGATATTCGTTGTA+GGG	+	chr1_3:8229513-8229532	Msa0101590:intron	45.0%
	CATCCCTACAACGAATATCG+AGG	-	chr1_3:8229519-8229538	None:intergenic	45.0%
	TAGATAGGAAGGCCAACACT+CGG	-	chr1_3:8229212-8229231	None:intergenic	45.0%
!!	TAAATCCCACCGAGTGTTGA+GGG	-	chr1_3:8229263-8229282	None:intergenic	45.0%
	TAGATAGGAAGGCCAACACT+CGG	-	chr1_3:8229212-8229231	None:intergenic	45.0%
!!	TGTGAGGAGTGTTTCTCGTT+GGG	-	chr1_3:8229468-8229487	None:intergenic	45.0%
!!	ACAGTACAAGCCGGTTTTGT+AGG	+	chr1_3:8229485-8229504	Msa0101590:intron	45.0%
!!	CAGTACAAGCCGGTTTTGTA+GGG	+	chr1_3:8229486-8229505	Msa0101590:intron	45.0%
	AGTGCCTCGATATTCGTTGT+AGG	+	chr1_3:8229512-8229531	Msa0101590:intron	45.0%
	GTGCCTCGATATTCGTTGTA+GGG	+	chr1_3:8229513-8229532	Msa0101590:intron	45.0%
	CATCCCTACAACGAATATCG+AGG	-	chr1_3:8229519-8229538	None:intergenic	45.0%
	AGCATATGGGACTGAGTTCA+CGG	-	chr1_3:8230424-8230443	None:intergenic	45.0%
	TCAGTCCCATATGCTAAACG+AGG	+	chr1_3:8230429-8230448	Msa0101590:CDS	45.0%
!	GGAATGCTTCACACCTTTTG+TGG	+	chr1_3:8230450-8230469	Msa0101590:CDS	45.0%
!	ATGCTTCACACCTTTTGTGG+GGG	+	chr1_3:8230453-8230472	Msa0101590:CDS	45.0%
!	CAGGTTCATATATTTGGGGC+TGG	+	chr1_3:8230555-8230574	Msa0101590:CDS	45.0%
	TCAGTAGCAAACACTAGCAG+TGG	+	chr1_3:8230782-8230801	Msa0101590:three_prime_UTR	45.0%
	GTGACCCTTAAAGGTCCTAG+TGG	+	chr1_3:8228341-8228360	Msa0101590:five_prime_UTR	50.0%
	AAGGTCCTAGTGGAGTTGTG+TGG	+	chr1_3:8228351-8228370	Msa0101590:five_prime_UTR	50.0%
	AGGTCCTAGTGGAGTTGTGT+GGG	+	chr1_3:8228352-8228371	Msa0101590:five_prime_UTR	50.0%
	CTGTTTACTTCACGGACGGT+TGG	+	chr1_3:8228402-8228421	Msa0101590:five_prime_UTR	50.0%
	ACAAGGGGATAGCAAGGCAA+AGG	+	chr1_3:8228583-8228602	Msa0101590:five_prime_UTR	50.0%
	ATCAGCCATGAACTGCTCAG+GGG	-	chr1_3:8228651-8228670	None:intergenic	50.0%
	CATCAGCCATGAACTGCTCA+GGG	-	chr1_3:8228652-8228671	None:intergenic	50.0%
	CACTAAGACCACACCTGTAG+CGG	+	chr1_3:8228676-8228695	Msa0101590:CDS	50.0%
!!	TTTTGGAAGGGAACCGCTAC+AGG	-	chr1_3:8228692-8228711	None:intergenic	50.0%
	CTTCTTCTTGGTCCTCTTGC+TGG	-	chr1_3:8228717-8228736	None:intergenic	50.0%
	CACCTGTCCAGACTAAGAAG+AGG	+	chr1_3:8228753-8228772	Msa0101590:CDS	50.0%
	CCTGTCCAGACTAAGAAGAG+GGG	+	chr1_3:8228755-8228774	Msa0101590:CDS	50.0%
	GTCTTCCCCTCTTCTTAGTC+TGG	-	chr1_3:8228763-8228782	None:intergenic	50.0%
	CTGGCAAGTTAGCTAGAGAG+AGG	-	chr1_3:8228916-8228935	None:intergenic	50.0%
	TGGGATTTAGTCCACGCTTC+AGG	+	chr1_3:8229023-8229042	Msa0101590:intron	50.0%
!	TGTGTTGTTGGGCCAACACT+CGG	+	chr1_3:8229075-8229094	Msa0101590:intron	50.0%
	GACTAAATCCCACCGAGTGT+TGG	-	chr1_3:8229090-8229109	None:intergenic	50.0%
	TGGGATTTAGTCCACGCTTC+AGG	+	chr1_3:8229023-8229042	Msa0101590:intron	50.0%
	TAACACACCCCCTCAACACT+CGG	+	chr1_3:8229251-8229270	Msa0101590:intron	50.0%
!!	AAATCCCACCGAGTGTTGAG+GGG	-	chr1_3:8229262-8229281	None:intergenic	50.0%
!	CTAAATCCCACCGAGTGTTG+AGG	-	chr1_3:8229088-8229107	None:intergenic	50.0%
	TGGGATTTAGTCCACGCTTC+AGG	+	chr1_3:8229023-8229042	Msa0101590:intron	50.0%
	TAACACACCCCCTCAACACT+CGG	+	chr1_3:8229251-8229270	Msa0101590:intron	50.0%
!!	AAATCCCACCGAGTGTTGAG+GGG	-	chr1_3:8229262-8229281	None:intergenic	50.0%
!	CTAAATCCCACCGAGTGTTG+AGG	-	chr1_3:8229088-8229107	None:intergenic	50.0%
	TGGGATTTAGTCCACGCTTC+AGG	+	chr1_3:8229023-8229042	Msa0101590:intron	50.0%
!!	CTGTGAGGAGTGTTTCTCGT+TGG	-	chr1_3:8229469-8229488	None:intergenic	50.0%
	ACACTCCTCACAGTACAAGC+CGG	+	chr1_3:8229476-8229495	Msa0101590:intron	50.0%
!!	CAAAACCGGCTTGTACTGTG+AGG	-	chr1_3:8229484-8229503	None:intergenic	50.0%
	GGCACTCATCCCTACAAAAC+CGG	-	chr1_3:8229498-8229517	None:intergenic	50.0%
	TAACACACCCCCTCAACACT+CGG	+	chr1_3:8229251-8229270	Msa0101590:intron	50.0%
!!	AAATCCCACCGAGTGTTGAG+GGG	-	chr1_3:8229262-8229281	None:intergenic	50.0%
!	CTAAATCCCACCGAGTGTTG+AGG	-	chr1_3:8229088-8229107	None:intergenic	50.0%
	TGGGATTTAGTCCACGCTTC+AGG	+	chr1_3:8229023-8229042	Msa0101590:intron	50.0%
!!	CTGTGAGGAGTGTTTCTCGT+TGG	-	chr1_3:8229469-8229488	None:intergenic	50.0%
	ACACTCCTCACAGTACAAGC+CGG	+	chr1_3:8229476-8229495	Msa0101590:intron	50.0%
!!	CAAAACCGGCTTGTACTGTG+AGG	-	chr1_3:8229484-8229503	None:intergenic	50.0%
	GGCACTCATCCCTACAAAAC+CGG	-	chr1_3:8229498-8229517	None:intergenic	50.0%
!	TTCACACCTTTTGTGGGGGA+TGG	+	chr1_3:8230457-8230476	Msa0101590:CDS	50.0%
	GGTTATCCATCCCCCACAAA+AGG	-	chr1_3:8230466-8230485	None:intergenic	50.0%
	TGCTTCCCCTGAGCAGTTCA+TGG	+	chr1_3:8228643-8228662	Msa0101590:exon	55.0%
	GCATCAGCCATGAACTGCTC+AGG	-	chr1_3:8228653-8228672	None:intergenic	55.0%
	CCCCTCTTCTTAGTCTGGAC+AGG	-	chr1_3:8228758-8228777	None:intergenic	55.0%
	TGTTAGCGGCCAACACTCAG+TGG	+	chr1_3:8229003-8229022	Msa0101590:intron	55.0%
	GTTAGCGGCCAACACTCAGT+GGG	+	chr1_3:8229004-8229023	Msa0101590:intron	55.0%
	TTGTTGGGCCAACACTCGGT+GGG	+	chr1_3:8229079-8229098	Msa0101590:intron	55.0%
	GTGTGTTAGCGGCCAACACT+CGG	+	chr1_3:8229150-8229169	Msa0101590:intron	55.0%
	GTGTGTTAGCGGCCAACACT+CGG	-	chr1_3:8229150-8229169	None:intergenic	55.0%
!	GTGTTGAGGGGGTGTGTTAG+CGG	-	chr1_3:8229250-8229269	None:intergenic	55.0%
!!	AATCCCACCGAGTGTTGAGG+GGG	-	chr1_3:8229261-8229280	None:intergenic	55.0%
	GTGTGTTAGCGGCCAACACT+CGG	+	chr1_3:8229150-8229169	Msa0101590:intron	55.0%
	GTGTGTTAGCGGCCAACACT+CGG	-	chr1_3:8229150-8229169	None:intergenic	55.0%
!	GTGTTGAGGGGGTGTGTTAG+CGG	-	chr1_3:8229250-8229269	None:intergenic	55.0%
!!	AATCCCACCGAGTGTTGAGG+GGG	-	chr1_3:8229261-8229280	None:intergenic	55.0%
	GTGTGTTAGCGGCCAACACT+CGG	-	chr1_3:8229150-8229169	None:intergenic	55.0%
!	GTGTTGAGGGGGTGTGTTAG+CGG	-	chr1_3:8229250-8229269	None:intergenic	55.0%
!!	AATCCCACCGAGTGTTGAGG+GGG	-	chr1_3:8229261-8229280	None:intergenic	55.0%
	GTGTGTTAGCGGCCAACACT+CGG	+	chr1_3:8229150-8229169	Msa0101590:intron	55.0%
	GTGTGTTAGCGGCCAACACT+CGG	-	chr1_3:8229150-8229169	None:intergenic	55.0%
!!	TGTTGGTGGTTCGCGTACAC+TGG	+	chr1_3:8230212-8230231	Msa0101590:CDS	55.0%
	TGTGCAGCAGTGAAACGACG+CGG	-	chr1_3:8230345-8230364	None:intergenic	55.0%
	GAAGGGAACCGCTACAGGTG+TGG	-	chr1_3:8228687-8228706	None:intergenic	60.0%
	AGTCCACGCTTCAGGCCCAT+TGG	+	chr1_3:8229031-8229050	Msa0101590:intron	60.0%
	GTCCACGCTTCAGGCCCATT+GGG	+	chr1_3:8229032-8229051	Msa0101590:intron	60.0%
	ACGCTTCAGGCCCATTGGGT+CGG	+	chr1_3:8229036-8229055	Msa0101590:intron	60.0%
!	AGCGTGAGGGGGTGTGTTGT+TGG	+	chr1_3:8229063-8229082	Msa0101590:intron	60.0%
!	GCGTGAGGGGGTGTGTTGTT+GGG	+	chr1_3:8229064-8229083	Msa0101590:intron	60.0%
	GTTGTTGGGCCAACACTCGG+TGG	+	chr1_3:8229078-8229097	Msa0101590:intron	60.0%
	AGTCCACGCTTCAGGCCCAT+TGG	+	chr1_3:8229031-8229050	Msa0101590:intron	60.0%
	GTCCACGCTTCAGGCCCATT+GGG	+	chr1_3:8229032-8229051	Msa0101590:intron	60.0%
	ACGCTTCAGGCCCATTGGGT+CGG	+	chr1_3:8229036-8229055	Msa0101590:intron	60.0%
	ACGCTTCAGCCCGACCCAAT+GGG	-	chr1_3:8229124-8229143	None:intergenic	60.0%
!	AGCGTGAGGGGGTGTGTTAG+CGG	+	chr1_3:8229139-8229158	Msa0101590:intron	60.0%
	ACACCCCCTCAACACTCGGT+GGG	+	chr1_3:8229255-8229274	Msa0101590:intron	60.0%
	AGTCCACGCTTCAGGCCCAT+TGG	+	chr1_3:8229031-8229050	Msa0101590:intron	60.0%
	GTCCACGCTTCAGGCCCATT+GGG	+	chr1_3:8229032-8229051	Msa0101590:intron	60.0%
	ACGCTTCAGGCCCATTGGGT+CGG	+	chr1_3:8229036-8229055	Msa0101590:intron	60.0%
	ACGCTTCAGCCCGACCCAAT+GGG	-	chr1_3:8229124-8229143	None:intergenic	60.0%
!	AGCGTGAGGGGGTGTGTTAG+CGG	+	chr1_3:8229139-8229158	Msa0101590:intron	60.0%
	ACACCCCCTCAACACTCGGT+GGG	+	chr1_3:8229255-8229274	Msa0101590:intron	60.0%
	TTCTCGTTGGGCCTGAAGCG+TGG	-	chr1_3:8229456-8229475	None:intergenic	60.0%
	ACACCCCCTCAACACTCGGT+GGG	+	chr1_3:8229255-8229274	Msa0101590:intron	60.0%
	AGTCCACGCTTCAGGCCCAT+TGG	+	chr1_3:8229031-8229050	Msa0101590:intron	60.0%
	GTCCACGCTTCAGGCCCATT+GGG	+	chr1_3:8229032-8229051	Msa0101590:intron	60.0%
	ACGCTTCAGGCCCATTGGGT+CGG	+	chr1_3:8229036-8229055	Msa0101590:intron	60.0%
	ACGCTTCAGCCCGACCCAAT+GGG	-	chr1_3:8229124-8229143	None:intergenic	60.0%
!	AGCGTGAGGGGGTGTGTTAG+CGG	+	chr1_3:8229139-8229158	Msa0101590:intron	60.0%
!	AGCGTGAGGGGGTGTGTTAG+CGG	-	chr1_3:8229139-8229158	None:intergenic	60.0%
	AACACACCCCCTCACGCTTC+AGG	+	chr1_3:8229818-8229837	Msa0101590:intron	60.0%
	TCGTTGGGCCTGAAGCGTGA+GGG	-	chr1_3:8229829-8229848	None:intergenic	60.0%
	GGTTCGCGTACACTGGTGAG+TGG	+	chr1_3:8230219-8230238	Msa0101590:intron	60.0%
	GTGCAGCAGTGAAACGACGC+GGG	-	chr1_3:8230344-8230363	None:intergenic	60.0%
	GACCCAATGGGCCTGAAGCG+TGG	-	chr1_3:8229037-8229056	None:intergenic	65.0%
	CGCTTCAGGCCCATTGGGTC+GGG	+	chr1_3:8229037-8229056	Msa0101590:intron	65.0%
	CACGCTCAGCCCGACCCAAT+GGG	-	chr1_3:8229049-8229068	None:intergenic	65.0%
	TCACGCTCAGCCCGACCCAA+TGG	-	chr1_3:8229050-8229069	None:intergenic	65.0%
	ATTGGGTCGGGCTGAGCGTG+AGG	+	chr1_3:8229049-8229068	Msa0101590:intron	65.0%
	TTGGGTCGGGCTGAGCGTGA+GGG	+	chr1_3:8229050-8229069	Msa0101590:intron	65.0%
	GACCCAATGGGCCTGAAGCG+TGG	-	chr1_3:8229037-8229056	None:intergenic	65.0%
	CGCTTCAGGCCCATTGGGTC+GGG	+	chr1_3:8229037-8229056	Msa0101590:intron	65.0%
	CACGCTTCAGCCCGACCCAA+TGG	-	chr1_3:8229125-8229144	None:intergenic	65.0%
	TTGGGTCGGGCTGAAGCGTG+AGG	+	chr1_3:8229125-8229144	Msa0101590:intron	65.0%
	TGGGTCGGGCTGAAGCGTGA+GGG	+	chr1_3:8229126-8229145	Msa0101590:intron	65.0%
	CACACCCCCTCAACACTCGG+TGG	+	chr1_3:8229254-8229273	Msa0101590:intron	65.0%
	GACCCAATGGGCCTGAAGCG+TGG	-	chr1_3:8229037-8229056	None:intergenic	65.0%
	CGCTTCAGGCCCATTGGGTC+GGG	+	chr1_3:8229037-8229056	Msa0101590:intron	65.0%
	CACGCTTCAGCCCGACCCAA+TGG	-	chr1_3:8229125-8229144	None:intergenic	65.0%
	TTGGGTCGGGCTGAAGCGTG+AGG	+	chr1_3:8229125-8229144	Msa0101590:intron	65.0%
	TGGGTCGGGCTGAAGCGTGA+GGG	+	chr1_3:8229126-8229145	Msa0101590:intron	65.0%
	CACACCCCCTCAACACTCGG+TGG	+	chr1_3:8229254-8229273	Msa0101590:intron	65.0%
	CACACCCCCTCAACACTCGG+TGG	+	chr1_3:8229254-8229273	Msa0101590:intron	65.0%
	GACCCAATGGGCCTGAAGCG+TGG	-	chr1_3:8229037-8229056	None:intergenic	65.0%
	CGCTTCAGGCCCATTGGGTC+GGG	+	chr1_3:8229037-8229056	Msa0101590:intron	65.0%
	CACGCTTCAGCCCGACCCAA+TGG	-	chr1_3:8229125-8229144	None:intergenic	65.0%
	TTGGGTCGGGCTGAAGCGTG+AGG	+	chr1_3:8229125-8229144	Msa0101590:intron	65.0%
	TGGGTCGGGCTGAAGCGTGA+GGG	+	chr1_3:8229126-8229145	Msa0101590:intron	65.0%
	GTTGGGCCTGAAGCGTGAGG+GGG	-	chr1_3:8229827-8229846	None:intergenic	65.0%
	CGTTGGGCCTGAAGCGTGAG+GGG	-	chr1_3:8229828-8229847	None:intergenic	65.0%
	CTCGTTGGGCCTGAAGCGTG+AGG	-	chr1_3:8229454-8229473	None:intergenic	65.0%
	TGGGTCGGGCTGAGCGTGAG+GGG	+	chr1_3:8229051-8229070	Msa0101590:intron	70.0%
	GGGTCGGGCTGAAGCGTGAG+GGG	+	chr1_3:8229127-8229146	Msa0101590:intron	70.0%
	GGTCGGGCTGAAGCGTGAGG+GGG	+	chr1_3:8229128-8229147	Msa0101590:intron	70.0%
	GGGTCGGGCTGAAGCGTGAG+GGG	+	chr1_3:8229127-8229146	Msa0101590:intron	70.0%
	GGTCGGGCTGAAGCGTGAGG+GGG	+	chr1_3:8229128-8229147	Msa0101590:intron	70.0%
	GGGTCGGGCTGAAGCGTGAG+GGG	+	chr1_3:8229127-8229146	Msa0101590:intron	70.0%
	GGTCGGGCTGAAGCGTGAGG+GGG	+	chr1_3:8229128-8229147	Msa0101590:intron	70.0%
	GGGTCGGGCTGAGCGTGAGG+GGG	+	chr1_3:8229052-8229071	Msa0101590:intron	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	8228277	8230877	8228277	ID=Msa0101590;Name=Msa0101590
chr1_3	mRNA	8228277	8230877	8228277	ID=Msa0101590-mRNA-1;Parent=Msa0101590;Name=Msa0101590-mRNA-1;_AED=0.36;_eAED=0.36;_QI=385\|0.5\|0.66\|1\|0.5\|0.66\|3\|248\|185
chr1_3	exon	8228277	8228848	8228277	ID=Msa0101590-mRNA-1:exon:3248;Parent=Msa0101590-mRNA-1
chr1_3	exon	8230157	8230233	8230157	ID=Msa0101590-mRNA-1:exon:3249;Parent=Msa0101590-mRNA-1
chr1_3	exon	8230336	8230877	8230336	ID=Msa0101590-mRNA-1:exon:3250;Parent=Msa0101590-mRNA-1
chr1_3	five_prime_UTR	8228277	8228661	8228277	ID=Msa0101590-mRNA-1:five_prime_utr;Parent=Msa0101590-mRNA-1
chr1_3	CDS	8228662	8228848	8228662	ID=Msa0101590-mRNA-1:cds;Parent=Msa0101590-mRNA-1
chr1_3	CDS	8230157	8230233	8230157	ID=Msa0101590-mRNA-1:cds;Parent=Msa0101590-mRNA-1
chr1_3	CDS	8230336	8230629	8230336	ID=Msa0101590-mRNA-1:cds;Parent=Msa0101590-mRNA-1
chr1_3	three_prime_UTR	8230630	8230877	8230630	ID=Msa0101590-mRNA-1:three_prime_utr;Parent=Msa0101590-mRNA-1

Gene Sequence

>Msa0101590

ATGGCTGATGCAGTCACTAAGACCACACCTGTAGCGGTTCCCTTCCAAAAAACCAGCAAGAGGACCAAGAAGAAGCCTGTTAAAGAAGTTACACCTGTCCAGACTAAGAAGAGGGGAAGACGACCAAAAACAGCTAATTCTTTTGAGAGATCACATGATTTGGTGGTTTGTAACAAGGAACTCTCAGCCCAATCATTTACTTCCTCTTTTCCATATTTTGTTAAAATACTTAAAAACGGCAATGTTGGTGGTTCGCGTACACTGAGAATCCCGCGTCGTTTCACTGCTGCACATCTCCCCGACGACAAAACAGAAGTTACGCTTCGAAATTCAAGAGGCGAATGTTGGACCGTGAACTCAGTCCCATATGCTAAACGAGGAATGCTTCACACCTTTTGTGGGGGATGGATAACCTTTGTTCGTGATAATGGCATCAATTTTGGTGACACATGCATTTTTGAGCTTGTTTCTGATTATGTGATGCAGGTTCATATATTTGGGGCTGGAAAGGAAAGTATTGACAATCAAAATGGACATGTGAAACCTGATAACTTGTGA

Protein sequence

>Msa0101590

MADAVTKTTPVAVPFQKTSKRTKKKPVKEVTPVQTKKRGRRPKTANSFERSHDLVVCNKELSAQSFTSSFPYFVKILKNGNVGGSRTLRIPRRFTAAHLPDDKTEVTLRNSRGECWTVNSVPYAKRGMLHTFCGGWITFVRDNGINFGDTCIFELVSDYVMQVHIFGAGKESIDNQNGHVKPDNL*