Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399700 | AET05080.1 | 95.918 | 294 | 12 | 0 | 1 | 294 | 1 | 294 | 0.0 | 514 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399700 | G7LIV2 | 95.918 | 294 | 12 | 0 | 1 | 294 | 1 | 294 | 0.0 | 514 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034100 | Msa1399700 | 0.809564 | 1.778061e-50 | -8.615850e-47 |
| Msa0036990 | Msa1399700 | 0.801733 | 7.834852e-49 | -8.615850e-47 |
| Msa0041780 | Msa1399700 | 0.814395 | 1.574647e-51 | -8.615850e-47 |
| Msa0053480 | Msa1399700 | 0.801516 | 8.679071e-49 | -8.615850e-47 |
| Msa0120320 | Msa1399700 | 0.805202 | 1.495617e-49 | -8.615850e-47 |
| Msa1368660 | Msa1399700 | 0.810464 | 1.137665e-50 | -8.615850e-47 |
| Msa1382750 | Msa1399700 | 0.804491 | 2.106182e-49 | -8.615850e-47 |
| Msa1384620 | Msa1399700 | 0.822361 | 2.468180e-53 | -8.615850e-47 |
| Msa1388270 | Msa1399700 | 0.810900 | 9.157873e-51 | -8.615850e-47 |
| Msa1399700 | Msa1401000 | 0.810657 | 1.033667e-50 | -8.615850e-47 |
| Msa1399700 | Msa1409060 | -0.805638 | 1.211908e-49 | -8.615850e-47 |
| Msa1399700 | Msa1427600 | 0.814799 | 1.281427e-51 | -8.615850e-47 |
| Msa1399700 | Msa1450630 | 0.811716 | 6.090845e-51 | -8.615850e-47 |
| Msa1399700 | Msa1459630 | 0.802597 | 5.201822e-49 | -8.615850e-47 |
| Msa0608940 | Msa1399700 | 0.810832 | 9.473610e-51 | -8.615850e-47 |
| Msa0691740 | Msa1399700 | 0.802858 | 4.594390e-49 | -8.615850e-47 |
| Msa0697600 | Msa1399700 | 0.802799 | 4.726946e-49 | -8.615850e-47 |
| Msa0698480 | Msa1399700 | 0.800275 | 1.555433e-48 | -8.615850e-47 |
| Msa0705810 | Msa1399700 | 0.805380 | 1.372579e-49 | -8.615850e-47 |
| Msa0714060 | Msa1399700 | 0.803285 | 3.749141e-49 | -8.615850e-47 |
| Msa0714200 | Msa1399700 | 0.805643 | 1.208812e-49 | -8.615850e-47 |
| Msa0748980 | Msa1399700 | 0.826764 | 2.267770e-54 | -8.615850e-47 |
| Msa0756440 | Msa1399700 | 0.807520 | 4.856802e-50 | -8.615850e-47 |
| Msa0774360 | Msa1399700 | 0.807303 | 5.398739e-50 | -8.615850e-47 |
| Msa0825520 | Msa1399700 | 0.821841 | 3.258081e-53 | -8.615850e-47 |
| Msa0835550 | Msa1399700 | 0.810314 | 1.225641e-50 | -8.615850e-47 |
| Msa0128110 | Msa1399700 | 0.806331 | 8.665257e-50 | -8.615850e-47 |
| Msa0131090 | Msa1399700 | 0.824474 | 7.917680e-54 | -8.615850e-47 |
| Msa0160650 | Msa1399700 | 0.807206 | 5.661295e-50 | -8.615850e-47 |
| Msa0163530 | Msa1399700 | 0.814899 | 1.218115e-51 | -8.615850e-47 |
| Msa0225880 | Msa1399700 | 0.817735 | 2.826231e-52 | -8.615850e-47 |
| Msa0230980 | Msa1399700 | 0.807074 | 6.037289e-50 | -8.615850e-47 |
| Msa1243630 | Msa1399700 | 0.805027 | 1.627249e-49 | -8.615850e-47 |
| Msa1244220 | Msa1399700 | 0.805522 | 1.281687e-49 | -8.615850e-47 |
| Msa1288970 | Msa1399700 | 0.809240 | 2.086420e-50 | -8.615850e-47 |
| Msa1295220 | Msa1399700 | 0.804151 | 2.478966e-49 | -8.615850e-47 |
| Msa0372990 | Msa1399700 | 0.802411 | 5.681733e-49 | -8.615850e-47 |
| Msa0378670 | Msa1399700 | 0.813443 | 2.553180e-51 | -8.615850e-47 |
| Msa0378700 | Msa1399700 | 0.809442 | 1.888760e-50 | -8.615850e-47 |
| Msa0412760 | Msa1399700 | 0.802920 | 4.462278e-49 | -8.615850e-47 |
| Msa0431940 | Msa1399700 | 0.813144 | 2.969172e-51 | -8.615850e-47 |
| Msa0985040 | Msa1399700 | 0.805587 | 1.241934e-49 | -8.615850e-47 |
| Msa0999480 | Msa1399700 | 0.801416 | 9.097297e-49 | -8.615850e-47 |
| Msa0999590 | Msa1399700 | 0.802474 | 5.514211e-49 | -8.615850e-47 |
| Msa1031530 | Msa1399700 | 0.818716 | 1.695512e-52 | -8.615850e-47 |
| Msa1038110 | Msa1399700 | 0.807744 | 4.352555e-50 | -8.615850e-47 |
| Msa1043020 | Msa1399700 | 0.800818 | 1.205732e-48 | -8.615850e-47 |
| Msa1070630 | Msa1399700 | 0.804557 | 2.039984e-49 | -8.615850e-47 |
| Msa1071310 | Msa1399700 | 0.821679 | 3.552598e-53 | -8.615850e-47 |
| Msa1096570 | Msa1399700 | 0.805405 | 1.356452e-49 | -8.615850e-47 |
| Msa0240590 | Msa1399700 | 0.800381 | 1.480237e-48 | -8.615850e-47 |
| Msa0260470 | Msa1399700 | 0.823139 | 1.626295e-53 | -8.615850e-47 |
| Msa0270460 | Msa1399700 | 0.808284 | 3.340030e-50 | -8.615850e-47 |
| Msa0304110 | Msa1399700 | 0.818563 | 1.836680e-52 | -8.615850e-47 |
| Msa0341190 | Msa1399700 | 0.813991 | 1.933989e-51 | -8.615850e-47 |
| Msa1129660 | Msa1399700 | 0.812071 | 5.097168e-51 | -8.615850e-47 |
| Msa1158450 | Msa1399700 | 0.809401 | 1.926981e-50 | -8.615850e-47 |
| Msa1171630 | Msa1399700 | -0.813686 | 2.257960e-51 | -8.615850e-47 |
| Msa1196210 | Msa1399700 | 0.821812 | 3.308764e-53 | -8.615850e-47 |
| Msa0488900 | Msa1399700 | 0.809766 | 1.608603e-50 | -8.615850e-47 |
| Msa0520810 | Msa1399700 | 0.800256 | 1.569264e-48 | -8.615850e-47 |
| Msa0560370 | Msa1399700 | 0.806579 | 7.680385e-50 | -8.615850e-47 |
| Msa0861480 | Msa1399700 | 0.827584 | 1.443113e-54 | -8.615850e-47 |
| Msa0861560 | Msa1399700 | 0.831590 | 1.531009e-55 | -8.615850e-47 |
| Msa0864730 | Msa1399700 | 0.826039 | 3.376163e-54 | -8.615850e-47 |
| Msa0864750 | Msa1399700 | 0.824626 | 7.290884e-54 | -8.615850e-47 |
| Msa0912110 | Msa1399700 | 0.804376 | 2.225250e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399700 | MtrunA17_Chr8g0389001 | 95.578 | 294 | 13 | 0 | 1 | 294 | 1 | 294 | 0.0 | 513 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1399700 | AT1G01990.1 | 28.934 | 197 | 116 | 7 | 94 | 288 | 57 | 231 | 2.08e-13 | 68.9 |
| Msa1399700 | AT2G37400.1 | 35.099 | 151 | 85 | 4 | 153 | 294 | 122 | 268 | 9.65e-13 | 68.2 |
| Msa1399700 | AT3G53560.2 | 32.515 | 163 | 93 | 5 | 140 | 294 | 163 | 316 | 2.96e-11 | 63.9 |
| Msa1399700 | AT3G53560.1 | 32.515 | 163 | 93 | 5 | 140 | 294 | 115 | 268 | 3.04e-11 | 63.5 |
Find 54 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTGGGTTGTTGTCAAAA+TGG | 0.204451 | tig0022394:-15879 | Msa1399700:CDS |
| ACTGAAGAAAGTGATGTTAT+TGG | 0.208083 | tig0022394:+15846 | None:intergenic |
| TGTTAGCTGCAGTGAGAATT+TGG | 0.222303 | tig0022394:-15640 | Msa1399700:CDS |
| AATCGTTATCTTAGATTATT+CGG | 0.255975 | tig0022394:-15450 | Msa1399700:CDS |
| GCAAGGTTGTTGATCGTATT+AGG | 0.259715 | tig0022394:-15428 | Msa1399700:CDS |
| TGCCTTGTTGAAGGGTATTA+AGG | 0.259824 | tig0022394:-15511 | Msa1399700:CDS |
| AATTGAGGAGATTTAGGTTC+TGG | 0.280926 | tig0022394:+15966 | None:intergenic |
| TTCTGGGTTGTTGTCAAAAT+GGG | 0.312539 | tig0022394:-15878 | Msa1399700:CDS |
| AAAGAGGGAAATTTACCAAT+AGG | 0.326930 | tig0022394:+15936 | None:intergenic |
| TGACGAGGAGGGTCAAAGTT+TGG | 0.335068 | tig0022394:+15993 | None:intergenic |
| AGAGATATTGGAGAAAGATA+TGG | 0.380622 | tig0022394:-15595 | Msa1399700:CDS |
| TAGGGTCTTGGAAGGAGATA+TGG | 0.385995 | tig0022394:-15409 | Msa1399700:CDS |
| TGTTGATCGTATTAGGGTCT+TGG | 0.393710 | tig0022394:-15421 | Msa1399700:CDS |
| CAAGGTTGTTGATCGTATTA+GGG | 0.400610 | tig0022394:-15427 | Msa1399700:CDS |
| AATTTGGAGTTGATTAAGAT+TGG | 0.405158 | tig0022394:-15624 | Msa1399700:CDS |
| AAGAGGGAAATTTACCAATA+GGG | 0.407017 | tig0022394:+15937 | None:intergenic |
| TTGAAGAGATTCAGAAGAAG+GGG | 0.415188 | tig0022394:+16073 | None:intergenic |
| ATTGAGGAGATTTAGGTTCT+GGG | 0.415976 | tig0022394:+15967 | None:intergenic |
| AACATTCATCAACCATTTCA+AGG | 0.417026 | tig0022394:+15535 | None:intergenic |
| TTTGAAGAGATTCAGAAGAA+GGG | 0.422303 | tig0022394:+16072 | None:intergenic |
| AAAACAGATTCAACATGATC+TGG | 0.437814 | tig0022394:+15759 | None:intergenic |
| TGGTGAAGATAAAGCTCTAA+TGG | 0.447460 | tig0022394:+16100 | None:intergenic |
| TTCTTCAGTTGTTTCTGTTG+AGG | 0.465645 | tig0022394:-15832 | Msa1399700:CDS |
| TGTTCTCGAGTACCTTGAAA+TGG | 0.474209 | tig0022394:-15547 | Msa1399700:CDS |
| AAGTGAAGCAAGAGCTTCCA+TGG | 0.487727 | tig0022394:+16232 | None:intergenic |
| TACAGTAACAGTAACAAAAG+AGG | 0.516360 | tig0022394:+15920 | None:intergenic |
| GAAGATGATGGTGAAGTTGA+AGG | 0.533673 | tig0022394:+16122 | None:intergenic |
| TGAAGAGATTCAGAAGAAGG+GGG | 0.536064 | tig0022394:+16074 | None:intergenic |
| GAGAAAGAGAGAAGAAGCGG+TGG | 0.540109 | tig0022394:+16157 | None:intergenic |
| TGAGAGAAAGAGAGAAGAAG+CGG | 0.540345 | tig0022394:+16154 | None:intergenic |
| CGGTGGTTGATGATAGAGAA+GGG | 0.547001 | tig0022394:+16174 | None:intergenic |
| AACTGATGATGATGAAGCAT+GGG | 0.558759 | tig0022394:-15682 | Msa1399700:CDS |
| AATGGATAAGTGTGAGAGAG+AGG | 0.561975 | tig0022394:-15484 | Msa1399700:CDS |
| GAAGGGTATTAAGGTTGCAA+TGG | 0.563079 | tig0022394:-15502 | Msa1399700:CDS |
| TGAATGTTATGCCTTGTTGA+AGG | 0.563253 | tig0022394:-15520 | Msa1399700:CDS |
| GGATAGAAGAACAAAGAGGT+TGG | 0.569844 | tig0022394:+16198 | None:intergenic |
| AGTTTGGAACTTTGACAAGA+GGG | 0.578561 | tig0022394:+16009 | None:intergenic |
| GATCGTATTAGGGTCTTGGA+AGG | 0.579181 | tig0022394:-15417 | Msa1399700:CDS |
| GGATTGTAACAAGGCGCATG+AGG | 0.585808 | tig0022394:-15574 | Msa1399700:CDS |
| AAAGCTCTAATGGAAGATGA+TGG | 0.594159 | tig0022394:+16110 | None:intergenic |
| GCGGTGGTTGATGATAGAGA+AGG | 0.597445 | tig0022394:+16173 | None:intergenic |
| AACAAAGAGGTTGGTGACGG+TGG | 0.600204 | tig0022394:+16207 | None:intergenic |
| ACAGTAACAGTAACAAAAGA+GGG | 0.600367 | tig0022394:+15921 | None:intergenic |
| AAGTTTGGAACTTTGACAAG+AGG | 0.602519 | tig0022394:+16008 | None:intergenic |
| GAATGTTATGCCTTGTTGAA+GGG | 0.607528 | tig0022394:-15519 | Msa1399700:CDS |
| AAACTGATGATGATGAAGCA+TGG | 0.613753 | tig0022394:-15683 | Msa1399700:CDS |
| TTATCTTAGATTATTCGGCA+AGG | 0.617181 | tig0022394:-15445 | Msa1399700:CDS |
| GTCTTGGAAGGAGATATGGT+TGG | 0.652336 | tig0022394:-15405 | Msa1399700:CDS |
| TGGTTGATGATAGAGAAGGG+TGG | 0.653449 | tig0022394:+16177 | None:intergenic |
| GGGTGGATAGAAGAACAAAG+AGG | 0.659955 | tig0022394:+16194 | None:intergenic |
| AAGAACAAAGAGGTTGGTGA+CGG | 0.664559 | tig0022394:+16204 | None:intergenic |
| GAAAGATATGGATTGTAACA+AGG | 0.667587 | tig0022394:-15583 | Msa1399700:CDS |
| AACCTTAATACCCTTCAACA+AGG | 0.669269 | tig0022394:+15509 | None:intergenic |
| GATGGTGAAGTTGAAGGTGA+AGG | 0.697362 | tig0022394:+16128 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAATTGAGGAGATTT+AGG | + | tig0022394:15641-15660 | None:intergenic | 20.0% |
| !!! | AAGTGATTTTGAAGAATTTT+TGG | - | tig0022394:15808-15827 | Msa1399700:CDS | 20.0% |
| !!! | AGTGATTTTGAAGAATTTTT+GGG | - | tig0022394:15809-15828 | Msa1399700:CDS | 20.0% |
| !! | AATCGTTATCTTAGATTATT+CGG | - | tig0022394:16148-16167 | Msa1399700:CDS | 20.0% |
| !! | TTAAAAAATTGAGGAGATTT+AGG | + | tig0022394:15641-15660 | None:intergenic | 20.0% |
| !!! | AAGTGATTTTGAAGAATTTT+TGG | - | tig0022394:15808-15827 | Msa1399700:CDS | 20.0% |
| !!! | AGTGATTTTGAAGAATTTTT+GGG | - | tig0022394:15809-15828 | Msa1399700:CDS | 20.0% |
| !! | AATCGTTATCTTAGATTATT+CGG | - | tig0022394:16148-16167 | Msa1399700:CDS | 20.0% |
| !! | AATTTGGAGTTGATTAAGAT+TGG | - | tig0022394:15974-15993 | Msa1399700:CDS | 25.0% |
| !! | AATTTGGAGTTGATTAAGAT+TGG | - | tig0022394:15974-15993 | Msa1399700:CDS | 25.0% |
| TTTGAAGAGATTCAGAAGAA+GGG | + | tig0022394:15529-15548 | None:intergenic | 30.0% | |
| !! | TTTTGAAGAGATTCAGAAGA+AGG | + | tig0022394:15530-15549 | None:intergenic | 30.0% |
| CCAATAGGGTTAAAAAATTG+AGG | + | tig0022394:15650-15669 | None:intergenic | 30.0% | |
| !!! | CCTCAATTTTTTAACCCTAT+TGG | - | tig0022394:15647-15666 | Msa1399700:CDS | 30.0% |
| AAGAGGGAAATTTACCAATA+GGG | + | tig0022394:15664-15683 | None:intergenic | 30.0% | |
| AAAGAGGGAAATTTACCAAT+AGG | + | tig0022394:15665-15684 | None:intergenic | 30.0% | |
| ACAGTAACAGTAACAAAAGA+GGG | + | tig0022394:15680-15699 | None:intergenic | 30.0% | |
| TACAGTAACAGTAACAAAAG+AGG | + | tig0022394:15681-15700 | None:intergenic | 30.0% | |
| ACTGAAGAAAGTGATGTTAT+TGG | + | tig0022394:15755-15774 | None:intergenic | 30.0% | |
| AAAACAGATTCAACATGATC+TGG | + | tig0022394:15842-15861 | None:intergenic | 30.0% | |
| !!! | GATTGGTTTTGAAGAGATAT+TGG | - | tig0022394:15991-16010 | Msa1399700:CDS | 30.0% |
| AGAGATATTGGAGAAAGATA+TGG | - | tig0022394:16003-16022 | Msa1399700:CDS | 30.0% | |
| ! | GAAAGATATGGATTGTAACA+AGG | - | tig0022394:16015-16034 | Msa1399700:CDS | 30.0% |
| AACATTCATCAACCATTTCA+AGG | + | tig0022394:16066-16085 | None:intergenic | 30.0% | |
| TTATCTTAGATTATTCGGCA+AGG | - | tig0022394:16153-16172 | Msa1399700:CDS | 30.0% | |
| TTTGAAGAGATTCAGAAGAA+GGG | + | tig0022394:15529-15548 | None:intergenic | 30.0% | |
| !! | TTTTGAAGAGATTCAGAAGA+AGG | + | tig0022394:15530-15549 | None:intergenic | 30.0% |
| CCAATAGGGTTAAAAAATTG+AGG | + | tig0022394:15650-15669 | None:intergenic | 30.0% | |
| !!! | CCTCAATTTTTTAACCCTAT+TGG | - | tig0022394:15647-15666 | Msa1399700:CDS | 30.0% |
| AAGAGGGAAATTTACCAATA+GGG | + | tig0022394:15664-15683 | None:intergenic | 30.0% | |
| AAAGAGGGAAATTTACCAAT+AGG | + | tig0022394:15665-15684 | None:intergenic | 30.0% | |
| ACAGTAACAGTAACAAAAGA+GGG | + | tig0022394:15680-15699 | None:intergenic | 30.0% | |
| TACAGTAACAGTAACAAAAG+AGG | + | tig0022394:15681-15700 | None:intergenic | 30.0% | |
| ACTGAAGAAAGTGATGTTAT+TGG | + | tig0022394:15755-15774 | None:intergenic | 30.0% | |
| AAAACAGATTCAACATGATC+TGG | + | tig0022394:15842-15861 | None:intergenic | 30.0% | |
| !!! | GATTGGTTTTGAAGAGATAT+TGG | - | tig0022394:15991-16010 | Msa1399700:CDS | 30.0% |
| AGAGATATTGGAGAAAGATA+TGG | - | tig0022394:16003-16022 | Msa1399700:CDS | 30.0% | |
| ! | GAAAGATATGGATTGTAACA+AGG | - | tig0022394:16015-16034 | Msa1399700:CDS | 30.0% |
| AACATTCATCAACCATTTCA+AGG | + | tig0022394:16066-16085 | None:intergenic | 30.0% | |
| TTATCTTAGATTATTCGGCA+AGG | - | tig0022394:16153-16172 | Msa1399700:CDS | 30.0% | |
| ! | AAAGCTCTAATGGAAGATGA+TGG | + | tig0022394:15491-15510 | None:intergenic | 35.0% |
| ! | TGGTGAAGATAAAGCTCTAA+TGG | + | tig0022394:15501-15520 | None:intergenic | 35.0% |
| TTGAAGAGATTCAGAAGAAG+GGG | + | tig0022394:15528-15547 | None:intergenic | 35.0% | |
| ! | GTTGAAAAATTGAGGGGTTT+TGG | + | tig0022394:15570-15589 | None:intergenic | 35.0% |
| AAGAGGGTTGAAAAATTGAG+GGG | + | tig0022394:15576-15595 | None:intergenic | 35.0% | |
| CAAGAGGGTTGAAAAATTGA+GGG | + | tig0022394:15577-15596 | None:intergenic | 35.0% | |
| ACAAGAGGGTTGAAAAATTG+AGG | + | tig0022394:15578-15597 | None:intergenic | 35.0% | |
| ! | AGTTTGGAACTTTGACAAGA+GGG | + | tig0022394:15592-15611 | None:intergenic | 35.0% |
| ! | AAGTTTGGAACTTTGACAAG+AGG | + | tig0022394:15593-15612 | None:intergenic | 35.0% |
| ! | ATTGAGGAGATTTAGGTTCT+GGG | + | tig0022394:15634-15653 | None:intergenic | 35.0% |
| ! | AATTGAGGAGATTTAGGTTC+TGG | + | tig0022394:15635-15654 | None:intergenic | 35.0% |
| TTTCTGGGTTGTTGTCAAAA+TGG | - | tig0022394:15719-15738 | Msa1399700:CDS | 35.0% | |
| TTCTGGGTTGTTGTCAAAAT+GGG | - | tig0022394:15720-15739 | Msa1399700:CDS | 35.0% | |
| !! | TTCTTCAGTTGTTTCTGTTG+AGG | - | tig0022394:15766-15785 | Msa1399700:CDS | 35.0% |
| ! | TTCTGTTGAGGAAAAAGCAT+TGG | - | tig0022394:15778-15797 | Msa1399700:CDS | 35.0% |
| ! | AAACTGATGATGATGAAGCA+TGG | - | tig0022394:15915-15934 | Msa1399700:CDS | 35.0% |
| ! | AACTGATGATGATGAAGCAT+GGG | - | tig0022394:15916-15935 | Msa1399700:CDS | 35.0% |
| ! | TGAATGTTATGCCTTGTTGA+AGG | - | tig0022394:16078-16097 | Msa1399700:CDS | 35.0% |
| ! | GAATGTTATGCCTTGTTGAA+GGG | - | tig0022394:16079-16098 | Msa1399700:CDS | 35.0% |
| AACCTTAATACCCTTCAACA+AGG | + | tig0022394:16092-16111 | None:intergenic | 35.0% | |
| CAAGGTTGTTGATCGTATTA+GGG | - | tig0022394:16171-16190 | Msa1399700:CDS | 35.0% | |
| ! | AAAGCTCTAATGGAAGATGA+TGG | + | tig0022394:15491-15510 | None:intergenic | 35.0% |
| ! | TGGTGAAGATAAAGCTCTAA+TGG | + | tig0022394:15501-15520 | None:intergenic | 35.0% |
| TTGAAGAGATTCAGAAGAAG+GGG | + | tig0022394:15528-15547 | None:intergenic | 35.0% | |
| ! | GTTGAAAAATTGAGGGGTTT+TGG | + | tig0022394:15570-15589 | None:intergenic | 35.0% |
| AAGAGGGTTGAAAAATTGAG+GGG | + | tig0022394:15576-15595 | None:intergenic | 35.0% | |
| CAAGAGGGTTGAAAAATTGA+GGG | + | tig0022394:15577-15596 | None:intergenic | 35.0% | |
| ACAAGAGGGTTGAAAAATTG+AGG | + | tig0022394:15578-15597 | None:intergenic | 35.0% | |
| ! | AGTTTGGAACTTTGACAAGA+GGG | + | tig0022394:15592-15611 | None:intergenic | 35.0% |
| ! | AAGTTTGGAACTTTGACAAG+AGG | + | tig0022394:15593-15612 | None:intergenic | 35.0% |
| ! | ATTGAGGAGATTTAGGTTCT+GGG | + | tig0022394:15634-15653 | None:intergenic | 35.0% |
| ! | AATTGAGGAGATTTAGGTTC+TGG | + | tig0022394:15635-15654 | None:intergenic | 35.0% |
| TTTCTGGGTTGTTGTCAAAA+TGG | - | tig0022394:15719-15738 | Msa1399700:CDS | 35.0% | |
| TTCTGGGTTGTTGTCAAAAT+GGG | - | tig0022394:15720-15739 | Msa1399700:CDS | 35.0% | |
| !! | TTCTTCAGTTGTTTCTGTTG+AGG | - | tig0022394:15766-15785 | Msa1399700:CDS | 35.0% |
| ! | TTCTGTTGAGGAAAAAGCAT+TGG | - | tig0022394:15778-15797 | Msa1399700:CDS | 35.0% |
| ! | AAACTGATGATGATGAAGCA+TGG | - | tig0022394:15915-15934 | Msa1399700:CDS | 35.0% |
| ! | AACTGATGATGATGAAGCAT+GGG | - | tig0022394:15916-15935 | Msa1399700:CDS | 35.0% |
| ! | TGAATGTTATGCCTTGTTGA+AGG | - | tig0022394:16078-16097 | Msa1399700:CDS | 35.0% |
| ! | GAATGTTATGCCTTGTTGAA+GGG | - | tig0022394:16079-16098 | Msa1399700:CDS | 35.0% |
| AACCTTAATACCCTTCAACA+AGG | + | tig0022394:16092-16111 | None:intergenic | 35.0% | |
| CAAGGTTGTTGATCGTATTA+GGG | - | tig0022394:16171-16190 | Msa1399700:CDS | 35.0% | |
| !! | AAGAACAAAGAGGTTGGTGA+CGG | + | tig0022394:15397-15416 | None:intergenic | 40.0% |
| GGATAGAAGAACAAAGAGGT+TGG | + | tig0022394:15403-15422 | None:intergenic | 40.0% | |
| TGAGAGAAAGAGAGAAGAAG+CGG | + | tig0022394:15447-15466 | None:intergenic | 40.0% | |
| ! | GAAGATGATGGTGAAGTTGA+AGG | + | tig0022394:15479-15498 | None:intergenic | 40.0% |
| TGAAGAGATTCAGAAGAAGG+GGG | + | tig0022394:15527-15546 | None:intergenic | 40.0% | |
| !!! | ATTGAGGGGTTTTGGTTTCT+GGG | + | tig0022394:15562-15581 | None:intergenic | 40.0% |
| !!! | AATTGAGGGGTTTTGGTTTC+TGG | + | tig0022394:15563-15582 | None:intergenic | 40.0% |
| ! | TGCATCAGCTTTTCTCTTTC+TGG | - | tig0022394:15703-15722 | Msa1399700:CDS | 40.0% |
| ! | GCATCAGCTTTTCTCTTTCT+GGG | - | tig0022394:15704-15723 | Msa1399700:CDS | 40.0% |
| TGTTAGCTGCAGTGAGAATT+TGG | - | tig0022394:15958-15977 | Msa1399700:CDS | 40.0% | |
| TGTTCTCGAGTACCTTGAAA+TGG | - | tig0022394:16051-16070 | Msa1399700:CDS | 40.0% | |
| !! | TGCCTTGTTGAAGGGTATTA+AGG | - | tig0022394:16087-16106 | Msa1399700:CDS | 40.0% |
| !! | GAAGGGTATTAAGGTTGCAA+TGG | - | tig0022394:16096-16115 | Msa1399700:CDS | 40.0% |
| AATGGATAAGTGTGAGAGAG+AGG | - | tig0022394:16114-16133 | Msa1399700:CDS | 40.0% | |
| GCAAGGTTGTTGATCGTATT+AGG | - | tig0022394:16170-16189 | Msa1399700:CDS | 40.0% | |
| TGTTGATCGTATTAGGGTCT+TGG | - | tig0022394:16177-16196 | Msa1399700:CDS | 40.0% | |
| !! | AAGAACAAAGAGGTTGGTGA+CGG | + | tig0022394:15397-15416 | None:intergenic | 40.0% |
| GGATAGAAGAACAAAGAGGT+TGG | + | tig0022394:15403-15422 | None:intergenic | 40.0% | |
| TGAGAGAAAGAGAGAAGAAG+CGG | + | tig0022394:15447-15466 | None:intergenic | 40.0% | |
| ! | GAAGATGATGGTGAAGTTGA+AGG | + | tig0022394:15479-15498 | None:intergenic | 40.0% |
| TGAAGAGATTCAGAAGAAGG+GGG | + | tig0022394:15527-15546 | None:intergenic | 40.0% | |
| !!! | ATTGAGGGGTTTTGGTTTCT+GGG | + | tig0022394:15562-15581 | None:intergenic | 40.0% |
| !!! | AATTGAGGGGTTTTGGTTTC+TGG | + | tig0022394:15563-15582 | None:intergenic | 40.0% |
| ! | TGCATCAGCTTTTCTCTTTC+TGG | - | tig0022394:15703-15722 | Msa1399700:CDS | 40.0% |
| ! | GCATCAGCTTTTCTCTTTCT+GGG | - | tig0022394:15704-15723 | Msa1399700:CDS | 40.0% |
| TGTTAGCTGCAGTGAGAATT+TGG | - | tig0022394:15958-15977 | Msa1399700:CDS | 40.0% | |
| TGTTCTCGAGTACCTTGAAA+TGG | - | tig0022394:16051-16070 | Msa1399700:CDS | 40.0% | |
| !! | TGCCTTGTTGAAGGGTATTA+AGG | - | tig0022394:16087-16106 | Msa1399700:CDS | 40.0% |
| !! | GAAGGGTATTAAGGTTGCAA+TGG | - | tig0022394:16096-16115 | Msa1399700:CDS | 40.0% |
| AATGGATAAGTGTGAGAGAG+AGG | - | tig0022394:16114-16133 | Msa1399700:CDS | 40.0% | |
| GCAAGGTTGTTGATCGTATT+AGG | - | tig0022394:16170-16189 | Msa1399700:CDS | 40.0% | |
| TGTTGATCGTATTAGGGTCT+TGG | - | tig0022394:16177-16196 | Msa1399700:CDS | 40.0% | |
| GGGTGGATAGAAGAACAAAG+AGG | + | tig0022394:15407-15426 | None:intergenic | 45.0% | |
| !! | TGGTTGATGATAGAGAAGGG+TGG | + | tig0022394:15424-15443 | None:intergenic | 45.0% |
| !! | CGGTGGTTGATGATAGAGAA+GGG | + | tig0022394:15427-15446 | None:intergenic | 45.0% |
| GATGGTGAAGTTGAAGGTGA+AGG | + | tig0022394:15473-15492 | None:intergenic | 45.0% | |
| !!! | TTAGGTTCTGGGTTTTGACG+AGG | + | tig0022394:15623-15642 | None:intergenic | 45.0% |
| !!! | ATGGGAAGTTTTGAGAGCAG+AGG | - | tig0022394:15934-15953 | Msa1399700:CDS | 45.0% |
| GATCGTATTAGGGTCTTGGA+AGG | - | tig0022394:16181-16200 | Msa1399700:CDS | 45.0% | |
| TAGGGTCTTGGAAGGAGATA+TGG | - | tig0022394:16189-16208 | Msa1399700:CDS | 45.0% | |
| GTCTTGGAAGGAGATATGGT+TGG | - | tig0022394:16193-16212 | Msa1399700:CDS | 45.0% | |
| GGGTGGATAGAAGAACAAAG+AGG | + | tig0022394:15407-15426 | None:intergenic | 45.0% | |
| !! | TGGTTGATGATAGAGAAGGG+TGG | + | tig0022394:15424-15443 | None:intergenic | 45.0% |
| !! | CGGTGGTTGATGATAGAGAA+GGG | + | tig0022394:15427-15446 | None:intergenic | 45.0% |
| GATGGTGAAGTTGAAGGTGA+AGG | + | tig0022394:15473-15492 | None:intergenic | 45.0% | |
| !!! | TTAGGTTCTGGGTTTTGACG+AGG | + | tig0022394:15623-15642 | None:intergenic | 45.0% |
| !!! | ATGGGAAGTTTTGAGAGCAG+AGG | - | tig0022394:15934-15953 | Msa1399700:CDS | 45.0% |
| GATCGTATTAGGGTCTTGGA+AGG | - | tig0022394:16181-16200 | Msa1399700:CDS | 45.0% | |
| TAGGGTCTTGGAAGGAGATA+TGG | - | tig0022394:16189-16208 | Msa1399700:CDS | 45.0% | |
| GTCTTGGAAGGAGATATGGT+TGG | - | tig0022394:16193-16212 | Msa1399700:CDS | 45.0% | |
| !! | AACAAAGAGGTTGGTGACGG+TGG | + | tig0022394:15394-15413 | None:intergenic | 50.0% |
| !! | GCGGTGGTTGATGATAGAGA+AGG | + | tig0022394:15428-15447 | None:intergenic | 50.0% |
| GAGAAAGAGAGAAGAAGCGG+TGG | + | tig0022394:15444-15463 | None:intergenic | 50.0% | |
| GATTCAGAAGAAGGGGGTGA+TGG | + | tig0022394:15521-15540 | None:intergenic | 50.0% | |
| TGACGAGGAGGGTCAAAGTT+TGG | + | tig0022394:15608-15627 | None:intergenic | 50.0% | |
| !! | GTTCTGGGTTTTGACGAGGA+GGG | + | tig0022394:15619-15638 | None:intergenic | 50.0% |
| GGATTGTAACAAGGCGCATG+AGG | - | tig0022394:16024-16043 | Msa1399700:CDS | 50.0% | |
| !! | AACAAAGAGGTTGGTGACGG+TGG | + | tig0022394:15394-15413 | None:intergenic | 50.0% |
| !! | GCGGTGGTTGATGATAGAGA+AGG | + | tig0022394:15428-15447 | None:intergenic | 50.0% |
| GAGAAAGAGAGAAGAAGCGG+TGG | + | tig0022394:15444-15463 | None:intergenic | 50.0% | |
| GATTCAGAAGAAGGGGGTGA+TGG | + | tig0022394:15521-15540 | None:intergenic | 50.0% | |
| TGACGAGGAGGGTCAAAGTT+TGG | + | tig0022394:15608-15627 | None:intergenic | 50.0% | |
| !! | GTTCTGGGTTTTGACGAGGA+GGG | + | tig0022394:15619-15638 | None:intergenic | 50.0% |
| GGATTGTAACAAGGCGCATG+AGG | - | tig0022394:16024-16043 | Msa1399700:CDS | 50.0% | |
| !!! | GGTTCTGGGTTTTGACGAGG+AGG | + | tig0022394:15620-15639 | None:intergenic | 55.0% |
| !!! | GGTTCTGGGTTTTGACGAGG+AGG | + | tig0022394:15620-15639 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022394 | gene | 15368 | 16252 | 15368 | ID=Msa1399700;Name=Msa1399700 |
| tig0022394 | mRNA | 15368 | 16252 | 15368 | ID=Msa1399700-mRNA-1;Parent=Msa1399700;Name=Msa1399700-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|1|1|0|294 |
| tig0022394 | exon | 15368 | 16252 | 15368 | ID=Msa1399700-mRNA-1:exon:17417;Parent=Msa1399700-mRNA-1 |
| tig0022394 | CDS | 15368 | 16252 | 15368 | ID=Msa1399700-mRNA-1:cds;Parent=Msa1399700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
