AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0163530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163530 MtrunA17_Chr1g0178631 94.627 335 18 0 1 335 1 335 0.0 588
Msa0163530 MtrunA17_Chr3g0077631 40.639 219 122 4 121 334 104 319 1.67e-49 168
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163530 AT5G03880.1 72.414 290 80 0 45 334 49 338 4.26e-161 454
Msa0163530 AT4G10000.1 34.211 342 183 7 8 334 14 328 3.34e-52 176
Msa0163530 AT4G10000.2 34.211 342 183 7 8 334 14 328 3.34e-52 176

Find 102 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAACCTTCGCACGAAAATT+TGG 0.131482 1_4:-41784185 None:intergenic
ATTTAAATTGATTATTAATT+AGG 0.135637 1_4:+41786343 Msa0163530:three_prime_UTR
TCTAATACAAATTCTGTTTC+TGG 0.148771 1_4:-41781376 None:intergenic
AGACGAAATAATTAAGTATT+TGG 0.152096 1_4:+41784567 Msa0163530:CDS
CACCGAAGCCACTTAAATTA+TGG 0.168936 1_4:+41785398 Msa0163530:CDS
TCTGGGTAGTAGTTTATTTC+TGG 0.181337 1_4:-41781358 None:intergenic
TCGCAGAAACAAGATATTTA+TGG 0.190483 1_4:+41781036 Msa0163530:five_prime_UTR
CGAAAATTTGGGCCGTTTCT+TGG 0.207802 1_4:-41784173 None:intergenic
TAGAGAAATAGTTGCTGTTT+TGG 0.248195 1_4:+41784124 Msa0163530:CDS
TTAAAAGGCAGTATAGTTAA+TGG 0.256357 1_4:-41786527 None:intergenic
GACAAGACTCTTGAGATTCT+TGG 0.268285 1_4:+41781516 Msa0163530:CDS
GTCCATACCTTTCGACAAAA+TGG 0.270523 1_4:-41783981 None:intergenic
TGATATAGAATATTTCGTTT+TGG 0.299080 1_4:-41785954 None:intergenic
TTATTTCTGGAAAATGAAAT+AGG 0.300804 1_4:-41781345 None:intergenic
AAGTATTTGGTTGGAACATA+TGG 0.302490 1_4:+41784580 Msa0163530:CDS
TTTGTTTGGGGAAATGGTTT+TGG 0.305124 1_4:-41781182 None:intergenic
TTGCTCTTTCGCTTTGCTAC+TGG 0.307870 1_4:+41781552 Msa0163530:CDS
TGGTTCACAGGTACCTTTCT+TGG 0.308769 1_4:+41786095 Msa0163530:intron
CAACCTTCGCACGAAAATTT+GGG 0.318898 1_4:-41784184 None:intergenic
GAAAATTTGGGCCGTTTCTT+GGG 0.320564 1_4:-41784172 None:intergenic
TCAAATTCATATATCTCAAT+AGG 0.320762 1_4:-41783798 None:intergenic
TACATTGAAACGCCAGTGTT+TGG 0.321278 1_4:-41784538 None:intergenic
TTTCTCAATTCTCAGTTCAT+AGG 0.325348 1_4:+41781322 Msa0163530:CDS
GATCTTATAGCAAAGCGTTT+AGG 0.329835 1_4:-41781492 None:intergenic
GAGCTTAAAAGTTAAAACTA+TGG 0.331071 1_4:+41786449 Msa0163530:three_prime_UTR
ATAGCAAAGCGTTTAGGTTC+AGG 0.338103 1_4:-41781486 None:intergenic
AACATTTCTACACCAGTGTT+TGG 0.342818 1_4:-41786123 None:intergenic
ACCGAAGCCACTTAAATTAT+GGG 0.347189 1_4:+41785399 Msa0163530:CDS
GTTTCCCCACGTTTATTTGT+TGG 0.371016 1_4:-41780952 None:intergenic
AAATATCTTGTTTCTGCGAT+TGG 0.376326 1_4:-41781032 None:intergenic
AATATTCTATATCAGAAAAC+TGG 0.378479 1_4:+41785963 Msa0163530:CDS
TCAGAAAACTGGACATTTCC+AGG 0.380253 1_4:+41785974 Msa0163530:CDS
TTCTTTCTCATTTGTTTCCA+AGG 0.387801 1_4:+41782979 Msa0163530:CDS
AGTTGAAAAGCATATTCATT+TGG 0.388475 1_4:-41783013 None:intergenic
ACATTGAAACGCCAGTGTTT+GGG 0.402036 1_4:-41784537 None:intergenic
ATTTGGTGGAATTTCATCCT+TGG 0.404155 1_4:-41782996 None:intergenic
TATATCTCAATAGGCTTCTC+TGG 0.412301 1_4:-41783789 None:intergenic
ACGTGAAGTACTTGTGGAAT+TGG 0.413589 1_4:+41785772 Msa0163530:CDS
AGGCAAAGTGGTTGAACTAT+TGG 0.414097 1_4:-41781111 None:intergenic
GAAATAATTAAGTATTTGGT+TGG 0.416181 1_4:+41784571 Msa0163530:CDS
GCCCATAATTTAAGTGGCTT+CGG 0.425263 1_4:-41785400 None:intergenic
CTAATACAAATTCTGTTTCT+GGG 0.425710 1_4:-41781375 None:intergenic
GGAGACAATCTTACCATGTA+AGG 0.426269 1_4:-41784233 None:intergenic
CGGTTAGTCAGCAACGGTAT+TGG 0.428419 1_4:-41781143 None:intergenic
ATTCCTCTTACTTTATCGCT+TGG 0.434103 1_4:+41785068 Msa0163530:CDS
ACTTAAATTATGGGCTTATG+AGG 0.436645 1_4:+41785408 Msa0163530:CDS
AGTATAGTTAATGGCCTTGT+AGG 0.438930 1_4:-41786518 None:intergenic
GTAAAAGAAACATCAAAGAT+AGG 0.441714 1_4:+41783759 Msa0163530:CDS
TGAAAAGCATATTCATTTGG+TGG 0.447995 1_4:-41783010 None:intergenic
TCCAAGGTAATGGCCATGGC+TGG 0.451242 1_4:+41781282 Msa0163530:exon
TTCTATCCTTGCCCAAGAAA+CGG 0.451827 1_4:+41784161 Msa0163530:CDS
AATCCAAGCGATAAAGTAAG+AGG 0.457533 1_4:-41785071 None:intergenic
TCATAAGCCCATAATTTAAG+TGG 0.458921 1_4:-41785406 None:intergenic
TCATTGTTTGTTGTCCTACA+AGG 0.460814 1_4:+41786504 Msa0163530:three_prime_UTR
CGTGCGAAGGTTGTTGAGAT+GGG 0.462625 1_4:+41784194 Msa0163530:CDS
ACTTGCGGTCTTGCTATGCT+TGG 0.464063 1_4:+41785201 Msa0163530:CDS
GTAATGGCCATGGCTGGAAC+AGG 0.472143 1_4:+41781288 Msa0163530:exon
TAGCAAAGCGTTTAGGTTCA+GGG 0.474563 1_4:-41781485 None:intergenic
TCGTGCGAAGGTTGTTGAGA+TGG 0.480686 1_4:+41784193 Msa0163530:CDS
TAAAGTTACACAATGGTTTG+AGG 0.484867 1_4:+41786427 Msa0163530:three_prime_UTR
TCCAGCCATGGCCATTACCT+TGG 0.490748 1_4:-41781283 None:intergenic
GTGTTTGGATCTTCCAAGAA+AGG 0.490977 1_4:-41786108 None:intergenic
AGCAAAGCGTTTAGGTTCAG+GGG 0.498149 1_4:-41781484 None:intergenic
TTGGTGTTGCTTAACTGACT+TGG 0.498343 1_4:-41781085 None:intergenic
TATCTTGTTTCTGCGATTGG+AGG 0.501529 1_4:-41781029 None:intergenic
CATGGCCATTACCTTGGAAA+AGG 0.507618 1_4:-41781277 None:intergenic
TGTTATGTCTGTCTCTGTCT+TGG 0.507680 1_4:+41786298 Msa0163530:three_prime_UTR
GGCTTCGGTGGTAACTTCGC+TGG 0.508413 1_4:-41785385 None:intergenic
AGCTTAAAAGTTAAAACTAT+GGG 0.510720 1_4:+41786450 Msa0163530:three_prime_UTR
TAAAACACAGTTCCCTTACA+TGG 0.513518 1_4:+41784220 Msa0163530:CDS
GTGGTTGAACTATTGGCTCT+TGG 0.515634 1_4:-41781104 None:intergenic
AGTAGCAAAGCGAAAGAGCA+AGG 0.520076 1_4:-41781550 None:intergenic
TTTGGGCCGTTTCTTGGGCA+AGG 0.527655 1_4:-41784167 None:intergenic
TTGGTGGTAATTTGTTTGGA+CGG 0.533505 1_4:-41781163 None:intergenic
ATCTTGTTTCTGCGATTGGA+GGG 0.538985 1_4:-41781028 None:intergenic
TTGAGATATATGAATTTGAA+AGG 0.542729 1_4:+41783802 Msa0163530:CDS
CAGAGTTCCTGTTCCAGCCA+TGG 0.548748 1_4:-41781295 None:intergenic
AATCGTACGTGAAGTACTTG+TGG 0.549531 1_4:+41785766 Msa0163530:CDS
AAAATGATATTGACATGCAA+AGG 0.556582 1_4:-41786200 None:intergenic
AAGGATAGAAAAGAATATCA+AGG 0.558191 1_4:-41784148 None:intergenic
TCAGCAACGGTATTGGAAAG+AGG 0.561051 1_4:-41781136 None:intergenic
CATAATTTAAGTGGCTTCGG+TGG 0.561588 1_4:-41785397 None:intergenic
CAAAGCGAAAGAGCAAGGGA+AGG 0.562207 1_4:-41781545 None:intergenic
TTTCATTGTAGTTGTGCTAG+GGG 0.574387 1_4:+41785927 Msa0163530:intron
TGGAAAGAGGGAAGGCAAAG+TGG 0.575219 1_4:-41781123 None:intergenic
CAGCAACGGTATTGGAAAGA+GGG 0.580571 1_4:-41781135 None:intergenic
TGTTGATGATGAAGTTGAAG+TGG 0.581369 1_4:-41781427 None:intergenic
AAAGCGAAAGAGCAAGGGAA+GGG 0.581925 1_4:-41781544 None:intergenic
TTTGGACGGTTAGTCAGCAA+CGG 0.602059 1_4:-41781149 None:intergenic
GTAGCAAAGCGAAAGAGCAA+GGG 0.611002 1_4:-41781549 None:intergenic
TTCTTGGAAGATCCAAACAC+TGG 0.612315 1_4:+41786111 Msa0163530:CDS
ACTTACTTGACAAGCAAATG+TGG 0.620078 1_4:-41785800 None:intergenic
AACGGTATTGGAAAGAGGGA+AGG 0.621072 1_4:-41781131 None:intergenic
GAGACAATCTTACCATGTAA+GGG 0.623184 1_4:-41784232 None:intergenic
TATTAGGTTGACCCAAACAC+TGG 0.638176 1_4:+41784526 Msa0163530:intron
GCAAAGCGTTTAGGTTCAGG+GGG 0.639513 1_4:-41781483 None:intergenic
GCTAACCAACAAATAAACGT+GGG 0.652353 1_4:+41780947 Msa0163530:five_prime_UTR
AGCTAACCAACAAATAAACG+TGG 0.654549 1_4:+41780946 Msa0163530:five_prime_UTR
TCAACAATAAAGTTACACAA+TGG 0.664926 1_4:+41786420 Msa0163530:three_prime_UTR
TATGCTTGGTCGTATTACGA+AGG 0.667471 1_4:+41785215 Msa0163530:CDS
GCGAAGGTTGTTGAGATGGG+TGG 0.681372 1_4:+41784197 Msa0163530:CDS
CTAACCAACAAATAAACGTG+GGG 0.710173 1_4:+41780948 Msa0163530:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAGGTTTTTTTGTTT+GGG - chr1_4:41781198-41781217 None:intergenic 15.0%
!! ATAACAATTAAACAAAATTC+TGG - chr1_4:41782091-41782110 None:intergenic 15.0%
!!! TTTTTTTTTTTTTGGAAACT+TGG - chr1_4:41782337-41782356 None:intergenic 15.0%
!!! ATTAAGAAATAACAATTTTC+TGG + chr1_4:41784503-41784522 Msa0163530:intron 15.0%
!! TATACATTAATTTCAATTTG+TGG + chr1_4:41785283-41785302 Msa0163530:intron 15.0%
!! TATAACTTATAATCTAGTAA+TGG - chr1_4:41785491-41785510 None:intergenic 15.0%
!!! ATCAATTTAAATTTTACAAG+AGG - chr1_4:41786335-41786354 None:intergenic 15.0%
!!! TTTTAAGGTTTTTTTGTTTG+GGG - chr1_4:41781197-41781216 None:intergenic 20.0%
!!! GTTTTTAAGGTTTTTTTGTT+TGG - chr1_4:41781199-41781218 None:intergenic 20.0%
!!! TTATTTCTGGAAAATGAAAT+AGG - chr1_4:41781348-41781367 None:intergenic 20.0%
!!! TGTATATTTTCTTTCTTACA+TGG - chr1_4:41782572-41782591 None:intergenic 20.0%
!! TAGATAACTCAAAAATAAGT+TGG - chr1_4:41782663-41782682 None:intergenic 20.0%
!!! TTAAGAAATCTGTTTTGAAT+TGG + chr1_4:41782726-41782745 Msa0163530:intron 20.0%
!! GCATATAAACTATATCAAAT+TGG - chr1_4:41782883-41782902 None:intergenic 20.0%
!! TATGTAATAATGATCAATGA+GGG - chr1_4:41783053-41783072 None:intergenic 20.0%
!! TTATGTAATAATGATCAATG+AGG - chr1_4:41783054-41783073 None:intergenic 20.0%
!!! ATGTTAATGGATGAATTATT+AGG + chr1_4:41783109-41783128 Msa0163530:intron 20.0%
!!! TGTTAATGGATGAATTATTA+GGG + chr1_4:41783110-41783129 Msa0163530:intron 20.0%
!! GTGAAAATGTTAAACATTTA+AGG + chr1_4:41783489-41783508 Msa0163530:intron 20.0%
!! AAAATAAAATACAGAGGAAA+GGG - chr1_4:41783677-41783696 None:intergenic 20.0%
!! AAAAATAAAATACAGAGGAA+AGG - chr1_4:41783678-41783697 None:intergenic 20.0%
!! AACTGAAAAATAAAATACAG+AGG - chr1_4:41783683-41783702 None:intergenic 20.0%
!! TCAAATTCATATATCTCAAT+AGG - chr1_4:41783801-41783820 None:intergenic 20.0%
!! TTGAGATATATGAATTTGAA+AGG + chr1_4:41783802-41783821 Msa0163530:CDS 20.0%
!! ACAAAAGATAAATATTGAGA+GGG - chr1_4:41783840-41783859 None:intergenic 20.0%
!! TACAAAAGATAAATATTGAG+AGG - chr1_4:41783841-41783860 None:intergenic 20.0%
!!! GTAATTTTACATTAACAGTA+TGG + chr1_4:41783858-41783877 Msa0163530:intron 20.0%
!!! TTGTTTTGTTGATTTTTTTG+AGG - chr1_4:41784257-41784276 None:intergenic 20.0%
!! AAAAATCAACAAAACAAAGT+TGG + chr1_4:41784260-41784279 Msa0163530:intron 20.0%
!!! AGTTTCTTGTTATGATTTTT+TGG + chr1_4:41784284-41784303 Msa0163530:intron 20.0%
!!! GTTTCTTGTTATGATTTTTT+GGG + chr1_4:41784285-41784304 Msa0163530:intron 20.0%
!! AATATTAAATAACCATCACA+AGG - chr1_4:41784472-41784491 None:intergenic 20.0%
!! TGTGATGGTTATTTAATATT+TGG + chr1_4:41784472-41784491 Msa0163530:intron 20.0%
!!! AATAACAATTTTCTGGTATT+AGG + chr1_4:41784510-41784529 Msa0163530:intron 20.0%
!! AGACGAAATAATTAAGTATT+TGG + chr1_4:41784567-41784586 Msa0163530:CDS 20.0%
!! GAAATAATTAAGTATTTGGT+TGG + chr1_4:41784571-41784590 Msa0163530:CDS 20.0%
!!! AAGTTTTATAAGCTCTATTT+AGG + chr1_4:41784732-41784751 Msa0163530:intron 20.0%
!!! TTCATTGTTTCTAAAATTTC+AGG + chr1_4:41785348-41785367 Msa0163530:intron 20.0%
!!! TCATTGTTTCTAAAATTTCA+GGG + chr1_4:41785349-41785368 Msa0163530:intron 20.0%
!! CTAGATTATAAGTTATAGAT+TGG + chr1_4:41785494-41785513 Msa0163530:intron 20.0%
!!! ATTTTACATACTTGAAAACA+TGG + chr1_4:41785559-41785578 Msa0163530:intron 20.0%
!!! GTTATATCAAGCTTTTTTAT+AGG + chr1_4:41785660-41785679 Msa0163530:intron 20.0%
!! ACTAAACTAAGAAATACATA+TGG - chr1_4:41785844-41785863 None:intergenic 20.0%
!!! ATTTCTTAGTTTAGTCTTAT+TGG + chr1_4:41785849-41785868 Msa0163530:intron 20.0%
!!! GATATAGAATATTTCGTTTT+GGG - chr1_4:41785956-41785975 None:intergenic 20.0%
!!! TGATATAGAATATTTCGTTT+TGG - chr1_4:41785957-41785976 None:intergenic 20.0%
!! AATATTCTATATCAGAAAAC+TGG + chr1_4:41785963-41785982 Msa0163530:CDS 20.0%
!! ATGTGTATATTTGCATAAAA+TGG - chr1_4:41786013-41786032 None:intergenic 20.0%
!! GAAAAAAAATGATCAAATAG+AGG + chr1_4:41786386-41786405 Msa0163530:three_prime_UTR 20.0%
!! AGCTTAAAAGTTAAAACTAT+GGG + chr1_4:41786450-41786469 Msa0163530:three_prime_UTR 20.0%
!!! AGTTTTTGTGTGTGTTTTTA+AGG - chr1_4:41781212-41781231 None:intergenic 25.0%
!! CTAATACAAATTCTGTTTCT+GGG - chr1_4:41781378-41781397 None:intergenic 25.0%
! TCTAATACAAATTCTGTTTC+TGG - chr1_4:41781379-41781398 None:intergenic 25.0%
! CATACATGCATTTAACAAAA+AGG - chr1_4:41781694-41781713 None:intergenic 25.0%
! TAAATGCATGTATGTTATGA+AGG + chr1_4:41781700-41781719 Msa0163530:intron 25.0%
!! GTTCAGGTAAATGTTTATTT+TGG + chr1_4:41782426-41782445 Msa0163530:intron 25.0%
!!! AAATGTTTATTTTGGAGTGA+TGG + chr1_4:41782434-41782453 Msa0163530:intron 25.0%
!!! GATTTTTTACATAGGTTCAA+TGG + chr1_4:41782498-41782517 Msa0163530:intron 25.0%
! AAAAGATTCTGCTGAATTAT+TGG + chr1_4:41782772-41782791 Msa0163530:intron 25.0%
!! CCATTTTCATATCATATGAA+CGG - chr1_4:41782802-41782821 None:intergenic 25.0%
! TAAATTTACTGAGATTCTCT+TGG + chr1_4:41782912-41782931 Msa0163530:intron 25.0%
!! AGTTGAAAAGCATATTCATT+TGG - chr1_4:41783016-41783035 None:intergenic 25.0%
! GATGTTAGTACTTATGTTAA+TGG + chr1_4:41783096-41783115 Msa0163530:intron 25.0%
! GATATGTAATAGGATGTAAT+AGG - chr1_4:41783197-41783216 None:intergenic 25.0%
! GAAACAAACTGATATGTAAT+AGG - chr1_4:41783207-41783226 None:intergenic 25.0%
! TTAATCAAACAGCTAACTAA+AGG - chr1_4:41783312-41783331 None:intergenic 25.0%
! GAATCCTAGTAATTTCATTT+GGG - chr1_4:41783447-41783466 None:intergenic 25.0%
! TGAATCCTAGTAATTTCATT+TGG - chr1_4:41783448-41783467 None:intergenic 25.0%
! GTAAAAGAAACATCAAAGAT+AGG + chr1_4:41783759-41783778 Msa0163530:CDS 25.0%
! CTATTCCTTAATCTTCATAA+TGG - chr1_4:41783901-41783920 None:intergenic 25.0%
! TTCTTTAATAATGTTCTTCG+TGG + chr1_4:41783943-41783962 Msa0163530:intron 25.0%
! AAGGATAGAAAAGAATATCA+AGG - chr1_4:41784151-41784170 None:intergenic 25.0%
! AAGTTAATGCAAAAACTATC+CGG + chr1_4:41784358-41784377 Msa0163530:intron 25.0%
!! AATAACGTGTGTTAGATTTT+AGG + chr1_4:41784664-41784683 Msa0163530:intron 25.0%
!! ATACTCATTTCTGAAAAGTA+TGG - chr1_4:41784833-41784852 None:intergenic 25.0%
!! AGTATTTTACCACATACAAA+GGG + chr1_4:41784848-41784867 Msa0163530:intron 25.0%
!! GTATTTTTCTCACAATGTTA+TGG - chr1_4:41784922-41784941 None:intergenic 25.0%
!!! AGTAATTTCTAGAACCTATA+GGG - chr1_4:41784970-41784989 None:intergenic 25.0%
!! TTTATCGCTTGGATTTTTAA+CGG + chr1_4:41785079-41785098 Msa0163530:CDS 25.0%
!!! ATTAGTTTTTATCACCAGAA+AGG + chr1_4:41785123-41785142 Msa0163530:intron 25.0%
!! GAATTTGTTCATTAAGCATT+AGG - chr1_4:41785461-41785480 None:intergenic 25.0%
! ACTTATAATCTAGTAATGGT+TGG - chr1_4:41785487-41785506 None:intergenic 25.0%
! ATCACTGATATGATTTATTC+AGG + chr1_4:41785727-41785746 Msa0163530:intron 25.0%
! TCACTGATATGATTTATTCA+GGG + chr1_4:41785728-41785747 Msa0163530:intron 25.0%
! AATGGAATCAATAAAATACC+TGG - chr1_4:41785995-41786014 None:intergenic 25.0%
! TTAATTCCGATGGTTAATTA+TGG + chr1_4:41786075-41786094 Msa0163530:intron 25.0%
! AAAATGATATTGACATGCAA+AGG - chr1_4:41786203-41786222 None:intergenic 25.0%
!!! TTCAGTAATTGATTTTTGTG+AGG + chr1_4:41786249-41786268 Msa0163530:three_prime_UTR 25.0%
!! TTTTACAAGAGGAAAAATGA+AGG - chr1_4:41786324-41786343 None:intergenic 25.0%
! TCAACAATAAAGTTACACAA+TGG + chr1_4:41786420-41786439 Msa0163530:three_prime_UTR 25.0%
! GAGCTTAAAAGTTAAAACTA+TGG + chr1_4:41786449-41786468 Msa0163530:three_prime_UTR 25.0%
! TTAAAAGGCAGTATAGTTAA+TGG - chr1_4:41786530-41786549 None:intergenic 25.0%
!! AAATATCTTGTTTCTGCGAT+TGG - chr1_4:41781035-41781054 None:intergenic 30.0%
TCGCAGAAACAAGATATTTA+TGG + chr1_4:41781036-41781055 Msa0163530:five_prime_UTR 30.0%
!!! GAACAGTTTCTTTTGTTGTT+GGG - chr1_4:41781258-41781277 None:intergenic 30.0%
TTTCTCAATTCTCAGTTCAT+AGG + chr1_4:41781322-41781341 Msa0163530:CDS 30.0%
TGTTTGCAATAAGAAGAGAA+GGG - chr1_4:41781610-41781629 None:intergenic 30.0%
! TACTTCATTTCTAACGCTTT+TGG + chr1_4:41781640-41781659 Msa0163530:intron 30.0%
ATTATGTAATCACATGCGTT+AGG + chr1_4:41781782-41781801 Msa0163530:intron 30.0%
TTATGTAATCACATGCGTTA+GGG + chr1_4:41781783-41781802 Msa0163530:intron 30.0%
! TGCACAAATTAATACTGACT+GGG - chr1_4:41781893-41781912 None:intergenic 30.0%
ATGCACAAATTAATACTGAC+TGG - chr1_4:41781894-41781913 None:intergenic 30.0%
!! TATTAATTTGTGCATCGACT+TGG + chr1_4:41781899-41781918 Msa0163530:intron 30.0%
ACCTGTAATTGTTTGATCAA+AGG + chr1_4:41781988-41782007 Msa0163530:intron 30.0%
CCTGTAATTGTTTGATCAAA+GGG + chr1_4:41781989-41782008 Msa0163530:intron 30.0%
ATTGTTTGATCAAAGGGATT+TGG + chr1_4:41781995-41782014 Msa0163530:intron 30.0%
TTTGAATTTGACACCTAAAG+AGG - chr1_4:41782188-41782207 None:intergenic 30.0%
!!! TTTTTTGGAAACTTGGTATC+TGG - chr1_4:41782330-41782349 None:intergenic 30.0%
TCACATTATATGCACAATCT+AGG - chr1_4:41782397-41782416 None:intergenic 30.0%
TTCAATGGAAAGATAAAGCA+TGG + chr1_4:41782513-41782532 Msa0163530:intron 30.0%
TCAATGGAAAGATAAAGCAT+GGG + chr1_4:41782514-41782533 Msa0163530:intron 30.0%
AAGATAAAGCATGGGATAAA+TGG + chr1_4:41782522-41782541 Msa0163530:intron 30.0%
CCGTTCATATGATATGAAAA+TGG + chr1_4:41782799-41782818 Msa0163530:intron 30.0%
TACTATAAAGCAGTATCCAA+AGG + chr1_4:41782857-41782876 Msa0163530:intron 30.0%
!! AACTATATCAAATTGGCCTT+TGG - chr1_4:41782876-41782895 None:intergenic 30.0%
TTCTTTCTCATTTGTTTCCA+AGG + chr1_4:41782979-41782998 Msa0163530:CDS 30.0%
! TGAAAAGCATATTCATTTGG+TGG - chr1_4:41783013-41783032 None:intergenic 30.0%
! GAATATGCTTTTCAACTTTC+TGG + chr1_4:41783019-41783038 Msa0163530:CDS 30.0%
TAGGATGTAATAGGATGATA+AGG - chr1_4:41783188-41783207 None:intergenic 30.0%
! ATGTTTTCCATGCAAGAAAA+AGG + chr1_4:41783348-41783367 Msa0163530:intron 30.0%
GATATCTTTGGCTGAATTAT+TGG + chr1_4:41783382-41783401 Msa0163530:intron 30.0%
AGTTCCCAAATGAAATTACT+AGG + chr1_4:41783440-41783459 Msa0163530:intron 30.0%
ACAGCACAAAGTGATTAAAA+TGG - chr1_4:41783471-41783490 None:intergenic 30.0%
! TGTCTGTAATAGTATTTCTG+CGG + chr1_4:41783545-41783564 Msa0163530:intron 30.0%
TAATAATGTTCTTCGTGGAT+CGG + chr1_4:41783948-41783967 Msa0163530:intron 30.0%
! AGCAAACATTCTTTTTGTTG+TGG + chr1_4:41784079-41784098 Msa0163530:intron 30.0%
!!! TAGAGAAATAGTTGCTGTTT+TGG + chr1_4:41784124-41784143 Msa0163530:CDS 30.0%
ATGGATTCATAAACAACAAC+CGG - chr1_4:41784380-41784399 None:intergenic 30.0%
AAGTATTTGGTTGGAACATA+TGG + chr1_4:41784580-41784599 Msa0163530:CDS 30.0%
CTATTTAGGTGATATCTTCT+AGG + chr1_4:41784746-41784765 Msa0163530:intron 30.0%
! CTCATACACATGTTGTTTAT+TGG - chr1_4:41784795-41784814 None:intergenic 30.0%
! GAGTATTTTACCACATACAA+AGG + chr1_4:41784847-41784866 Msa0163530:intron 30.0%
! GTATTTTACCACATACAAAG+GGG + chr1_4:41784849-41784868 Msa0163530:intron 30.0%
! TATTTTACCACATACAAAGG+GGG + chr1_4:41784850-41784869 Msa0163530:intron 30.0%
!! CAGTAATTTCTAGAACCTAT+AGG - chr1_4:41784971-41784990 None:intergenic 30.0%
!! CTATAGGTTCTAGAAATTAC+TGG + chr1_4:41784969-41784988 Msa0163530:intron 30.0%
! ACTCGCAATAGGATTATTTT+TGG - chr1_4:41785009-41785028 None:intergenic 30.0%
! AAACTAATGATAGTGATGTC+AGG - chr1_4:41785111-41785130 None:intergenic 30.0%
! TATTTCCCTTTGCTATGTAA+TGG + chr1_4:41785250-41785269 Msa0163530:intron 30.0%
TCATAAGCCCATAATTTAAG+TGG - chr1_4:41785409-41785428 None:intergenic 30.0%
ACTTAAATTATGGGCTTATG+AGG + chr1_4:41785408-41785427 Msa0163530:CDS 30.0%
!! TTAGTTTTCTCTCAATTCTC+TGG - chr1_4:41785600-41785619 None:intergenic 30.0%
TGAGTAAAGTGATTACAAAG+TGG + chr1_4:41785638-41785657 Msa0163530:intron 30.0%
TGTGAACCATAATTAACCAT+CGG - chr1_4:41786084-41786103 None:intergenic 30.0%
TAAAGTTACACAATGGTTTG+AGG + chr1_4:41786427-41786446 Msa0163530:three_prime_UTR 30.0%
AGCTAACCAACAAATAAACG+TGG + chr1_4:41780946-41780965 Msa0163530:five_prime_UTR 35.0%
GCTAACCAACAAATAAACGT+GGG + chr1_4:41780947-41780966 Msa0163530:five_prime_UTR 35.0%
CTAACCAACAAATAAACGTG+GGG + chr1_4:41780948-41780967 Msa0163530:five_prime_UTR 35.0%
!! TTGGTGGTAATTTGTTTGGA+CGG - chr1_4:41781166-41781185 None:intergenic 35.0%
!!! GGTTTTGGTGGTAATTTGTT+TGG - chr1_4:41781170-41781189 None:intergenic 35.0%
! TTTGTTTGGGGAAATGGTTT+TGG - chr1_4:41781185-41781204 None:intergenic 35.0%
!!! GGTTTTTTTGTTTGGGGAAA+TGG - chr1_4:41781191-41781210 None:intergenic 35.0%
!! GGAACAGTTTCTTTTGTTGT+TGG - chr1_4:41781259-41781278 None:intergenic 35.0%
! AAGAAACTGTTCCTTTTCCA+AGG + chr1_4:41781266-41781285 Msa0163530:five_prime_UTR 35.0%
TCTGGGTAGTAGTTTATTTC+TGG - chr1_4:41781361-41781380 None:intergenic 35.0%
!! TGTTGATGATGAAGTTGAAG+TGG - chr1_4:41781430-41781449 None:intergenic 35.0%
! GATCTTATAGCAAAGCGTTT+AGG - chr1_4:41781495-41781514 None:intergenic 35.0%
!! CTACTGGAGTTTTTGTTTCT+GGG + chr1_4:41781568-41781587 Msa0163530:CDS 35.0%
GTGTTTGCAATAAGAAGAGA+AGG - chr1_4:41781611-41781630 None:intergenic 35.0%
TTGGGGTAGAATTAGAAACT+AGG + chr1_4:41781934-41781953 Msa0163530:intron 35.0%
CCCTTTGATCAAACAATTAC+AGG - chr1_4:41781992-41782011 None:intergenic 35.0%
AAGTGAGTGAGTAGTATGAA+TGG - chr1_4:41782121-41782140 None:intergenic 35.0%
AATGTGAAGTCATTGAGTTC+AGG + chr1_4:41782410-41782429 Msa0163530:intron 35.0%
TGATGGTAAAGCAATTTCAG+TGG + chr1_4:41782451-41782470 Msa0163530:intron 35.0%
TTTCAGTGGCTTGATTGATT+TGG + chr1_4:41782465-41782484 Msa0163530:intron 35.0%
!!! GGTCTGTGGATTTTTTACAT+AGG + chr1_4:41782490-41782509 Msa0163530:intron 35.0%
GAAACTGTTGCTCTATACAA+AGG - chr1_4:41782638-41782657 None:intergenic 35.0%
ATGAGAAAGAATACCTGCAA+AGG - chr1_4:41782970-41782989 None:intergenic 35.0%
! ATTTGGTGGAATTTCATCCT+TGG - chr1_4:41782999-41783018 None:intergenic 35.0%
! TAGGATGATAAGGTGGTTTT+GGG - chr1_4:41783178-41783197 None:intergenic 35.0%
! ATAGGATGATAAGGTGGTTT+TGG - chr1_4:41783179-41783198 None:intergenic 35.0%
GATGTAATAGGATGATAAGG+TGG - chr1_4:41783185-41783204 None:intergenic 35.0%
!! CACAACATTGACTTAGATAG+TGG + chr1_4:41783226-41783245 Msa0163530:intron 35.0%
!! TTTGGAACCTTTTTCTTGCA+TGG - chr1_4:41783358-41783377 None:intergenic 35.0%
ATGCAAGAAAAAGGTTCCAA+AGG + chr1_4:41783357-41783376 Msa0163530:intron 35.0%
GTTCCAAAGGAAGATATCTT+TGG + chr1_4:41783370-41783389 Msa0163530:intron 35.0%
TATTCGATCTGCAATACACT+AGG - chr1_4:41783522-41783541 None:intergenic 35.0%
TATATCTCAATAGGCTTCTC+TGG - chr1_4:41783792-41783811 None:intergenic 35.0%
CTTAATCTTCATAATGGCTG+TGG - chr1_4:41783895-41783914 None:intergenic 35.0%
CACAGCCATTATGAAGATTA+AGG + chr1_4:41783893-41783912 Msa0163530:intron 35.0%
AATAATGTTCTTCGTGGATC+GGG + chr1_4:41783949-41783968 Msa0163530:intron 35.0%
!! GGTATGGACTATTGTTTTGT+AGG + chr1_4:41783995-41784014 Msa0163530:intron 35.0%
!!! GGCTTAAATTTTGACTGTAC+AGG + chr1_4:41784100-41784119 Msa0163530:intron 35.0%
TAAAACACAGTTCCCTTACA+TGG + chr1_4:41784220-41784239 Msa0163530:CDS 35.0%
GAGACAATCTTACCATGTAA+GGG - chr1_4:41784235-41784254 None:intergenic 35.0%
TTTGGGCATCTTGAAATAGA+TGG + chr1_4:41784302-41784321 Msa0163530:intron 35.0%
TTGGGCATCTTGAAATAGAT+GGG + chr1_4:41784303-41784322 Msa0163530:intron 35.0%
CTAACTCAACCCTACAAAAT+CGG + chr1_4:41784688-41784707 Msa0163530:intron 35.0%
!! TCTTACGAACCGATTTTGTA+GGG - chr1_4:41784700-41784719 None:intergenic 35.0%
!! ATCTTACGAACCGATTTTGT+AGG - chr1_4:41784701-41784720 None:intergenic 35.0%
!! CAAAATCGGTTCGTAAGATT+AGG + chr1_4:41784702-41784721 Msa0163530:intron 35.0%
GAGCATTAGTTAATCCCTAT+AGG + chr1_4:41784953-41784972 Msa0163530:intron 35.0%
AATGTCAAAACACTCGCAAT+AGG - chr1_4:41785020-41785039 None:intergenic 35.0%
ACATTCATTATGTGTTCTGC+AGG + chr1_4:41785035-41785054 Msa0163530:intron 35.0%
ATTCCTCTTACTTTATCGCT+TGG + chr1_4:41785068-41785087 Msa0163530:CDS 35.0%
AATCCAAGCGATAAAGTAAG+AGG - chr1_4:41785074-41785093 None:intergenic 35.0%
TGATACAAAGTTCACCTTTC+TGG - chr1_4:41785140-41785159 None:intergenic 35.0%
!!! TTTTTGCAGTCATTGACTTG+CGG + chr1_4:41785186-41785205 Msa0163530:intron 35.0%
ACCGAAGCCACTTAAATTAT+GGG + chr1_4:41785399-41785418 Msa0163530:CDS 35.0%
AAATTATGGGCTTATGAGGT+TGG + chr1_4:41785412-41785431 Msa0163530:intron 35.0%
TCATTAAGCATTAGGATGCA+TGG - chr1_4:41785453-41785472 None:intergenic 35.0%
ACTTACTTGACAAGCAAATG+TGG - chr1_4:41785803-41785822 None:intergenic 35.0%
CACGACATTGTATTTGTCAA+TGG + chr1_4:41786046-41786065 Msa0163530:intron 35.0%
ATGGATGATGTTAATTCCGA+TGG + chr1_4:41786065-41786084 Msa0163530:intron 35.0%
GATGGTTAATTATGGTTCAC+AGG + chr1_4:41786083-41786102 Msa0163530:intron 35.0%
AACATTTCTACACCAGTGTT+TGG - chr1_4:41786126-41786145 None:intergenic 35.0%
! TGATTTTTGTGAGGCTTATG+AGG + chr1_4:41786258-41786277 Msa0163530:three_prime_UTR 35.0%
! GATTTTTGTGAGGCTTATGA+GGG + chr1_4:41786259-41786278 Msa0163530:three_prime_UTR 35.0%
!! TCATTGTTTGTTGTCCTACA+AGG + chr1_4:41786504-41786523 Msa0163530:three_prime_UTR 35.0%
!! AGTATAGTTAATGGCCTTGT+AGG - chr1_4:41786521-41786540 None:intergenic 35.0%
GTTTCCCCACGTTTATTTGT+TGG - chr1_4:41780955-41780974 None:intergenic 40.0%
!! ATCTTGTTTCTGCGATTGGA+GGG - chr1_4:41781031-41781050 None:intergenic 40.0%
!! TATCTTGTTTCTGCGATTGG+AGG - chr1_4:41781032-41781051 None:intergenic 40.0%
!! TTGGTGTTGCTTAACTGACT+TGG - chr1_4:41781088-41781107 None:intergenic 40.0%
AGGCAAAGTGGTTGAACTAT+TGG - chr1_4:41781114-41781133 None:intergenic 40.0%
!!! CAGTTTCTTTTGTTGTTGGG+AGG - chr1_4:41781255-41781274 None:intergenic 40.0%
! CTGTTCCTTTTCCAAGGTAA+TGG + chr1_4:41781272-41781291 Msa0163530:exon 40.0%
! TAGCAAAGCGTTTAGGTTCA+GGG - chr1_4:41781488-41781507 None:intergenic 40.0%
! ATAGCAAAGCGTTTAGGTTC+AGG - chr1_4:41781489-41781508 None:intergenic 40.0%
GACAAGACTCTTGAGATTCT+TGG + chr1_4:41781516-41781535 Msa0163530:CDS 40.0%
!! GCTACTGGAGTTTTTGTTTC+TGG + chr1_4:41781567-41781586 Msa0163530:CDS 40.0%
!!! ACGCTTTTGGTTTGTGACAA+TGG + chr1_4:41781653-41781672 Msa0163530:intron 40.0%
! ATGCCTTCGATTAGAAGTGT+TGG + chr1_4:41781839-41781858 Msa0163530:intron 40.0%
GTAAAGTGAGTTAACTCGCT+TGG + chr1_4:41782147-41782166 Msa0163530:intron 40.0%
ACAGGAATTGTTATCACCTG+GGG - chr1_4:41782213-41782232 None:intergenic 40.0%
CACAGGAATTGTTATCACCT+GGG - chr1_4:41782214-41782233 None:intergenic 40.0%
ACACAGGAATTGTTATCACC+TGG - chr1_4:41782215-41782234 None:intergenic 40.0%
GGTGATAACAATTCCTGTGT+CGG + chr1_4:41782215-41782234 Msa0163530:intron 40.0%
GTGATAACAATTCCTGTGTC+GGG + chr1_4:41782216-41782235 Msa0163530:intron 40.0%
!! ATTGGTCTTCCACTAGTAGA+CGG + chr1_4:41782270-41782289 Msa0163530:intron 40.0%
!! AGTGGCTTGATTGATTTGGT+TGG + chr1_4:41782469-41782488 Msa0163530:intron 40.0%
!! TGATTGATTTGGTTGGTCTG+TGG + chr1_4:41782476-41782495 Msa0163530:intron 40.0%
!!! CTTTTTTGTTGTGCCTTTGC+AGG + chr1_4:41782954-41782973 Msa0163530:intron 40.0%
CAGCCAAAGATATCTTCCTT+TGG - chr1_4:41783376-41783395 None:intergenic 40.0%
!! GTATTTCTGCGGTTTTAGTG+TGG + chr1_4:41783556-41783575 Msa0163530:intron 40.0%
CCTTGTTAACACTAGTAGTG+CGG + chr1_4:41783722-41783741 Msa0163530:intron 40.0%
! GTCCATTTTGTCGAAAGGTA+TGG + chr1_4:41783979-41783998 Msa0163530:intron 40.0%
GTCCATACCTTTCGACAAAA+TGG - chr1_4:41783984-41784003 None:intergenic 40.0%
TTCTATCCTTGCCCAAGAAA+CGG + chr1_4:41784161-41784180 Msa0163530:CDS 40.0%
GAAAATTTGGGCCGTTTCTT+GGG - chr1_4:41784175-41784194 None:intergenic 40.0%
CAACCTTCGCACGAAAATTT+GGG - chr1_4:41784187-41784206 None:intergenic 40.0%
ACAACCTTCGCACGAAAATT+TGG - chr1_4:41784188-41784207 None:intergenic 40.0%
GGAGACAATCTTACCATGTA+AGG - chr1_4:41784236-41784255 None:intergenic 40.0%
! AAGCAGTTTAGCTTAGTGAC+TGG - chr1_4:41784333-41784352 None:intergenic 40.0%
AATCGTTGTAAGATGCGAGA+TGG - chr1_4:41784399-41784418 None:intergenic 40.0%
TTGCTTATCACACCTTGTGA+TGG + chr1_4:41784457-41784476 Msa0163530:intron 40.0%
!! TATTAGGTTGACCCAAACAC+TGG + chr1_4:41784526-41784545 Msa0163530:intron 40.0%
ACATTGAAACGCCAGTGTTT+GGG - chr1_4:41784540-41784559 None:intergenic 40.0%
TACATTGAAACGCCAGTGTT+TGG - chr1_4:41784541-41784560 None:intergenic 40.0%
ATTATGTGTTCTGCAGGTGA+TGG + chr1_4:41785041-41785060 Msa0163530:intron 40.0%
TATGCTTGGTCGTATTACGA+AGG + chr1_4:41785215-41785234 Msa0163530:CDS 40.0%
! TCCCTTTGCTATGTAATGGA+AGG + chr1_4:41785254-41785273 Msa0163530:intron 40.0%
CCCTTCCATTACATAGCAAA+GGG - chr1_4:41785258-41785277 None:intergenic 40.0%
! CCCTTTGCTATGTAATGGAA+GGG + chr1_4:41785255-41785274 Msa0163530:intron 40.0%
TCCCTTCCATTACATAGCAA+AGG - chr1_4:41785259-41785278 None:intergenic 40.0%
CATAATTTAAGTGGCTTCGG+TGG - chr1_4:41785400-41785419 None:intergenic 40.0%
CACCGAAGCCACTTAAATTA+TGG + chr1_4:41785398-41785417 Msa0163530:CDS 40.0%
GCCCATAATTTAAGTGGCTT+CGG - chr1_4:41785403-41785422 None:intergenic 40.0%
! TCACGTACGATTTTGCAGAA+AGG - chr1_4:41785758-41785777 None:intergenic 40.0%
! AATCGTACGTGAAGTACTTG+TGG + chr1_4:41785766-41785785 Msa0163530:CDS 40.0%
! ACGTGAAGTACTTGTGGAAT+TGG + chr1_4:41785772-41785791 Msa0163530:CDS 40.0%
TCAGAAAACTGGACATTTCC+AGG + chr1_4:41785974-41785993 Msa0163530:CDS 40.0%
GTGTTTGGATCTTCCAAGAA+AGG - chr1_4:41786111-41786130 None:intergenic 40.0%
TTCTTGGAAGATCCAAACAC+TGG + chr1_4:41786111-41786130 Msa0163530:CDS 40.0%
TGTTATGTCTGTCTCTGTCT+TGG + chr1_4:41786298-41786317 Msa0163530:three_prime_UTR 40.0%
!! GTGGTTGAACTATTGGCTCT+TGG - chr1_4:41781107-41781126 None:intergenic 45.0%
! AACGGTATTGGAAAGAGGGA+AGG - chr1_4:41781134-41781153 None:intergenic 45.0%
! CAGCAACGGTATTGGAAAGA+GGG - chr1_4:41781138-41781157 None:intergenic 45.0%
! TCAGCAACGGTATTGGAAAG+AGG - chr1_4:41781139-41781158 None:intergenic 45.0%
! TTTGGACGGTTAGTCAGCAA+CGG - chr1_4:41781152-41781171 None:intergenic 45.0%
!!! GTTTGGGGAAATGGTTTTGG+TGG - chr1_4:41781182-41781201 None:intergenic 45.0%
CATGGCCATTACCTTGGAAA+AGG - chr1_4:41781280-41781299 None:intergenic 45.0%
!! CTTTTCCAAGGTAATGGCCA+TGG + chr1_4:41781278-41781297 Msa0163530:exon 45.0%
! TCAGGGGGTTTGAAATTTGG+AGG - chr1_4:41781471-41781490 None:intergenic 45.0%
! GGTTCAGGGGGTTTGAAATT+TGG - chr1_4:41781474-41781493 None:intergenic 45.0%
! AGCAAAGCGTTTAGGTTCAG+GGG - chr1_4:41781487-41781506 None:intergenic 45.0%
AAAGCGAAAGAGCAAGGGAA+GGG - chr1_4:41781547-41781566 None:intergenic 45.0%
GTAGCAAAGCGAAAGAGCAA+GGG - chr1_4:41781552-41781571 None:intergenic 45.0%
AGTAGCAAAGCGAAAGAGCA+AGG - chr1_4:41781553-41781572 None:intergenic 45.0%
TTGCTCTTTCGCTTTGCTAC+TGG + chr1_4:41781552-41781571 Msa0163530:CDS 45.0%
! TTCTAATCGAAGGCATGTCC+CGG - chr1_4:41781835-41781854 None:intergenic 45.0%
ACGCCAACACTTCTAATCGA+AGG - chr1_4:41781845-41781864 None:intergenic 45.0%
TTGGCGTTACAGAGCATGTA+TGG + chr1_4:41781858-41781877 Msa0163530:intron 45.0%
TGGCGTTACAGAGCATGTAT+GGG + chr1_4:41781859-41781878 Msa0163530:intron 45.0%
!! AATTTGTGCATCGACTTGGC+TGG + chr1_4:41781903-41781922 Msa0163530:intron 45.0%
!! ACTTGGCTGGTTTCACTGTT+GGG + chr1_4:41781916-41781935 Msa0163530:intron 45.0%
GTGTCAAATTCAAATCCCCC+AGG + chr1_4:41782194-41782213 Msa0163530:intron 45.0%
CAGGAATTGTTATCACCTGG+GGG - chr1_4:41782212-41782231 None:intergenic 45.0%
!! ACTGGAGAGATGATGGATTG+TGG - chr1_4:41783144-41783163 None:intergenic 45.0%
CCGCACTACTAGTGTTAACA+AGG - chr1_4:41783725-41783744 None:intergenic 45.0%
AACACTAGTAGTGCGGTTTC+AGG + chr1_4:41783729-41783748 Msa0163530:intron 45.0%
! CAGCTGTCCATTTTGTCGAA+AGG + chr1_4:41783974-41783993 Msa0163530:intron 45.0%
CGAAAATTTGGGCCGTTTCT+TGG - chr1_4:41784176-41784195 None:intergenic 45.0%
AACGATTCCCCCTTTGTATG+TGG - chr1_4:41784860-41784879 None:intergenic 45.0%
GATGCATGGTTAGCATGTTG+TGG - chr1_4:41785439-41785458 None:intergenic 45.0%
TGGTTCACAGGTACCTTTCT+TGG + chr1_4:41786095-41786114 Msa0163530:intron 45.0%
!!! TTATAAAGTTTTTTTTTTTT+TGG - chr1_4:41782345-41782364 None:intergenic 5.0%
!! ATTTAAATTGATTATTAATT+AGG + chr1_4:41786343-41786362 Msa0163530:three_prime_UTR 5.0%
TGGAAAGAGGGAAGGCAAAG+TGG - chr1_4:41781126-41781145 None:intergenic 50.0%
! CGGTTAGTCAGCAACGGTAT+TGG - chr1_4:41781146-41781165 None:intergenic 50.0%
! GGGGGTTTGAAATTTGGAGG+AGG - chr1_4:41781468-41781487 None:intergenic 50.0%
! GCAAAGCGTTTAGGTTCAGG+GGG - chr1_4:41781486-41781505 None:intergenic 50.0%
CAAAGCGAAAGAGCAAGGGA+AGG - chr1_4:41781548-41781567 None:intergenic 50.0%
TGTTAGCCGCTGACACATGT+CGG + chr1_4:41781806-41781825 Msa0163530:intron 50.0%
!! GACTTGGCTGGTTTCACTGT+TGG + chr1_4:41781915-41781934 Msa0163530:intron 50.0%
!! CTTGGCTGGTTTCACTGTTG+GGG + chr1_4:41781917-41781936 Msa0163530:intron 50.0%
TGAGTTAACTCGCTTGGACG+TGG + chr1_4:41782153-41782172 Msa0163530:intron 50.0%
GAGTTAACTCGCTTGGACGT+GGG + chr1_4:41782154-41782173 Msa0163530:intron 50.0%
ATTGAAGCCAGAGCAAAGCC+CGG - chr1_4:41782252-41782271 None:intergenic 50.0%
! GGCTTTGCTCTGGCTTCAAT+TGG + chr1_4:41782252-41782271 Msa0163530:intron 50.0%
GTCTTCCACTAGTAGACGGT+GGG + chr1_4:41782274-41782293 Msa0163530:intron 50.0%
CCAAGGATCGACTAATCCAG+GGG - chr1_4:41782306-41782325 None:intergenic 50.0%
CCCAAGGATCGACTAATCCA+GGG - chr1_4:41782307-41782326 None:intergenic 50.0%
!! CCCTGGATTAGTCGATCCTT+GGG + chr1_4:41782304-41782323 Msa0163530:intron 50.0%
GAAACTTGGTATCTGGCCCA+AGG - chr1_4:41782323-41782342 None:intergenic 50.0%
!! TTTTGGGAAGTCGCAAGGAC+TGG - chr1_4:41783162-41783181 None:intergenic 50.0%
TCGTGCGAAGGTTGTTGAGA+TGG + chr1_4:41784193-41784212 Msa0163530:CDS 50.0%
CGTGCGAAGGTTGTTGAGAT+GGG + chr1_4:41784194-41784213 Msa0163530:CDS 50.0%
! ACTTGCGGTCTTGCTATGCT+TGG + chr1_4:41785201-41785220 Msa0163530:CDS 50.0%
! TCCAAGGTAATGGCCATGGC+TGG + chr1_4:41781282-41781301 Msa0163530:exon 55.0%
TCCAGCCATGGCCATTACCT+TGG - chr1_4:41781286-41781305 None:intergenic 55.0%
GTAATGGCCATGGCTGGAAC+AGG + chr1_4:41781288-41781307 Msa0163530:exon 55.0%
CAGAGTTCCTGTTCCAGCCA+TGG - chr1_4:41781298-41781317 None:intergenic 55.0%
! GTGGGAGTGTGCTCCTCTTT+AGG + chr1_4:41782172-41782191 Msa0163530:intron 55.0%
GGTCTTCCACTAGTAGACGG+TGG + chr1_4:41782273-41782292 Msa0163530:intron 55.0%
CCAATCCCACCGTCTACTAG+TGG - chr1_4:41782282-41782301 None:intergenic 55.0%
CCACTAGTAGACGGTGGGAT+TGG + chr1_4:41782279-41782298 Msa0163530:intron 55.0%
!! CCCCTGGATTAGTCGATCCT+TGG + chr1_4:41782303-41782322 Msa0163530:intron 55.0%
GCCCAAGGATCGACTAATCC+AGG - chr1_4:41782308-41782327 None:intergenic 55.0%
CGCAAGGACTGGAGAGATGA+TGG - chr1_4:41783151-41783170 None:intergenic 55.0%
!!! GGTGGTTTTGGGAAGTCGCA+AGG - chr1_4:41783167-41783186 None:intergenic 55.0%
TTTGGGCCGTTTCTTGGGCA+AGG - chr1_4:41784170-41784189 None:intergenic 55.0%
! CGGCCCAAATTTTCGTGCGA+AGG + chr1_4:41784181-41784200 Msa0163530:CDS 55.0%
GCGAAGGTTGTTGAGATGGG+TGG + chr1_4:41784197-41784216 Msa0163530:CDS 55.0%
CGGTGTCCGACATGTGTCAG+CGG - chr1_4:41781815-41781834 None:intergenic 60.0%
CGCTGACACATGTCGGACAC+CGG + chr1_4:41781813-41781832 Msa0163530:intron 60.0%
GCTGACACATGTCGGACACC+GGG + chr1_4:41781814-41781833 Msa0163530:intron 60.0%
TGTGTCGGGCCAGTCCATAC+CGG + chr1_4:41782230-41782249 Msa0163530:intron 60.0%
GAGCAAAGCCCGGTATGGAC+TGG - chr1_4:41782242-41782261 None:intergenic 60.0%
GTCCATACCGGGCTTTGCTC+TGG + chr1_4:41782242-41782261 Msa0163530:intron 60.0%
AGCCAGAGCAAAGCCCGGTA+TGG - chr1_4:41782247-41782266 None:intergenic 60.0%
GGCTTCGGTGGTAACTTCGC+TGG - chr1_4:41785388-41785407 None:intergenic 60.0%
!! GGTATGGACTGGCCCGACAC+AGG - chr1_4:41782231-41782250 None:intergenic 65.0%
GTGTCGGGCCAGTCCATACC+GGG + chr1_4:41782231-41782250 Msa0163530:intron 65.0%
!! AGACGGTGGGATTGGTCCCC+TGG + chr1_4:41782287-41782306 Msa0163530:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 41780941 41786563 41780941 ID=Msa0163530;Name=Msa0163530
chr1_4 mRNA 41780941 41786563 41780941 ID=Msa0163530-mRNA-1;Parent=Msa0163530;Name=Msa0163530-mRNA-1;_AED=0.12;_eAED=0.12;_QI=350|1|1|1|1|1|12|369|335
chr1_4 exon 41780941 41781589 41780941 ID=Msa0163530-mRNA-1:exon:12036;Parent=Msa0163530-mRNA-1
chr1_4 exon 41782976 41783040 41782976 ID=Msa0163530-mRNA-1:exon:12037;Parent=Msa0163530-mRNA-1
chr1_4 exon 41783751 41783823 41783751 ID=Msa0163530-mRNA-1:exon:12038;Parent=Msa0163530-mRNA-1
chr1_4 exon 41783977 41783995 41783977 ID=Msa0163530-mRNA-1:exon:12039;Parent=Msa0163530-mRNA-1
chr1_4 exon 41784122 41784241 41784122 ID=Msa0163530-mRNA-1:exon:12040;Parent=Msa0163530-mRNA-1
chr1_4 exon 41784532 41784601 41784532 ID=Msa0163530-mRNA-1:exon:12041;Parent=Msa0163530-mRNA-1
chr1_4 exon 41785057 41785100 41785057 ID=Msa0163530-mRNA-1:exon:12042;Parent=Msa0163530-mRNA-1
chr1_4 exon 41785195 41785236 41785195 ID=Msa0163530-mRNA-1:exon:12043;Parent=Msa0163530-mRNA-1
chr1_4 exon 41785370 41785429 41785370 ID=Msa0163530-mRNA-1:exon:12044;Parent=Msa0163530-mRNA-1
chr1_4 exon 41785749 41785816 41785749 ID=Msa0163530-mRNA-1:exon:12045;Parent=Msa0163530-mRNA-1
chr1_4 exon 41785938 41785995 41785938 ID=Msa0163530-mRNA-1:exon:12046;Parent=Msa0163530-mRNA-1
chr1_4 exon 41786105 41786563 41786105 ID=Msa0163530-mRNA-1:exon:12047;Parent=Msa0163530-mRNA-1
chr1_4 five_prime_UTR 41780941 41781290 41780941 ID=Msa0163530-mRNA-1:five_prime_utr;Parent=Msa0163530-mRNA-1
chr1_4 CDS 41781291 41781589 41781291 ID=Msa0163530-mRNA-1:cds;Parent=Msa0163530-mRNA-1
chr1_4 CDS 41782976 41783040 41782976 ID=Msa0163530-mRNA-1:cds;Parent=Msa0163530-mRNA-1
chr1_4 CDS 41783751 41783823 41783751 ID=Msa0163530-mRNA-1:cds;Parent=Msa0163530-mRNA-1
chr1_4 CDS 41783977 41783995 41783977 ID=Msa0163530-mRNA-1:cds;Parent=Msa0163530-mRNA-1
chr1_4 CDS 41784122 41784241 41784122 ID=Msa0163530-mRNA-1:cds;Parent=Msa0163530-mRNA-1
chr1_4 CDS 41784532 41784601 41784532 ID=Msa0163530-mRNA-1:cds;Parent=Msa0163530-mRNA-1
chr1_4 CDS 41785057 41785100 41785057 ID=Msa0163530-mRNA-1:cds;Parent=Msa0163530-mRNA-1
chr1_4 CDS 41785195 41785236 41785195 ID=Msa0163530-mRNA-1:cds;Parent=Msa0163530-mRNA-1
chr1_4 CDS 41785370 41785429 41785370 ID=Msa0163530-mRNA-1:cds;Parent=Msa0163530-mRNA-1
chr1_4 CDS 41785749 41785816 41785749 ID=Msa0163530-mRNA-1:cds;Parent=Msa0163530-mRNA-1
chr1_4 CDS 41785938 41785995 41785938 ID=Msa0163530-mRNA-1:cds;Parent=Msa0163530-mRNA-1
chr1_4 CDS 41786105 41786194 41786105 ID=Msa0163530-mRNA-1:cds;Parent=Msa0163530-mRNA-1
chr1_4 three_prime_UTR 41786195 41786563 41786195 ID=Msa0163530-mRNA-1:three_prime_utr;Parent=Msa0163530-mRNA-1
Gene Sequence

>Msa0163530

ATGGCCATGGCTGGAACAGGAACTCTGAGTTTTTCTCAATTCTCAGTTCATAGGCCTATTTCATTTTCCAGAAATAAACTACTACCCAGAAACAGAATTTGTATTAGAGCTATGTCAGAAACAGAAACATCTTCTTCCACTTCAACTTCATCATCAACATCAGTGTCAATTACTCCTCCTCCAAATTTCAAACCCCCTGAACCTAAACGCTTTGCTATAAGATCTGACAAGACTCTTGAGATTCTTGGAGCTTCCCTTCCCTTGCTCTTTCGCTTTGCTACTGGAGTTTTTGTTTCTGGGTATTCTTTCTCATTTGTTTCCAAGGATGAAATTCCACCAAATGAATATGCTTTTCAACTTTCTGGCATTACAGTAAAAGAAACATCAAAGATAGGCGCTCGACCAGAGAAGCCTATTGAGATATATGAATTTGAAAGCTGTCCATTTTGTCGAAAGGTTAGAGAAATAGTTGCTGTTTTGGACCTTGATATTCTTTTCTATCCTTGCCCAAGAAACGGCCCAAATTTTCGTGCGAAGGTTGTTGAGATGGGTGGTAAAACACAGTTCCCTTACATGGTTGACCCAAACACTGGCGTTTCAATGTATGAATCAGACGAAATAATTAAGTATTTGGTTGGAACATATGGTGATGGAAACATTCCTCTTACTTTATCGCTTGGATTTTTAACGTCATTGACTTGCGGTCTTGCTATGCTTGGTCGTATTACGAAGGGAACATCATATACTCCAGCGAAGTTACCACCGAAGCCACTTAAATTATGGGCTTATGAGGGATCTCCTTTCTGCAAAATCGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACATTTGCTTGTCAATTGTGCTAGGGGTAGCCCAAAACGAAATATTCTATATCAGAAAACTGGACATTTCCAGGTACCTTTCTTGGAAGATCCAAACACTGGTGTAGAAATGTTTGAGAGTGCAGAAATTATAGAGTACATTAGAGCAACTTACACTCTTTAG

Protein sequence

>Msa0163530

MAMAGTGTLSFSQFSVHRPISFSRNKLLPRNRICIRAMSETETSSSTSTSSSTSVSITPPPNFKPPEPKRFAIRSDKTLEILGASLPLLFRFATGVFVSGYSFSFVSKDEIPPNEYAFQLSGITVKETSKIGARPEKPIEIYEFESCPFCRKVREIVAVLDLDILFYPCPRNGPNFRAKVVEMGGKTQFPYMVDPNTGVSMYESDEIIKYLVGTYGDGNIPLTLSLGFLTSLTCGLAMLGRITKGTSYTPAKLPPKPLKLWAYEGSPFCKIVREVLVELELPHLLVNCARGSPKRNILYQKTGHFQVPFLEDPNTGVEMFESAEIIEYIRATYTL*