Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143370 | XP_013446625.1 | 97.927 | 193 | 4 | 0 | 1 | 193 | 1 | 193 | 1.28e-138 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143370 | sp|Q9SDN0|DNJ20_ARATH | 51.010 | 198 | 84 | 5 | 1 | 190 | 1 | 193 | 5.62e-59 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143370 | A0A072TT90 | 97.927 | 193 | 4 | 0 | 1 | 193 | 1 | 193 | 6.11e-139 | 395 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001550 | Msa1143370 | 0.813911 | 2.013487e-51 | -8.615850e-47 |
| Msa0002110 | Msa1143370 | 0.845686 | 3.478100e-59 | -8.615850e-47 |
| Msa0065670 | Msa1143370 | 0.819847 | 9.365756e-53 | -8.615850e-47 |
| Msa0066890 | Msa1143370 | 0.818110 | 2.325026e-52 | -8.615850e-47 |
| Msa0067590 | Msa1143370 | 0.816391 | 5.664606e-52 | -8.615850e-47 |
| Msa0095810 | Msa1143370 | 0.844371 | 7.878082e-59 | -8.615850e-47 |
| Msa0111110 | Msa1143370 | 0.839695 | 1.358556e-57 | -8.615850e-47 |
| Msa0630770 | Msa1143370 | 0.806118 | 9.607492e-50 | -8.615850e-47 |
| Msa0638010 | Msa1143370 | 0.807176 | 5.744375e-50 | -8.615850e-47 |
| Msa0656940 | Msa1143370 | 0.803549 | 3.306644e-49 | -8.615850e-47 |
| Msa0686950 | Msa1143370 | 0.802929 | 4.442803e-49 | -8.615850e-47 |
| Msa0693340 | Msa1143370 | 0.801871 | 7.338405e-49 | -8.615850e-47 |
| Msa0734250 | Msa1143370 | -0.803019 | 4.257034e-49 | -8.615850e-47 |
| Msa0742370 | Msa1143370 | 0.802494 | 5.461728e-49 | -8.615850e-47 |
| Msa0769300 | Msa1143370 | -0.803261 | 3.793875e-49 | -8.615850e-47 |
| Msa0795750 | Msa1143370 | -0.834854 | 2.356109e-56 | -8.615850e-47 |
| Msa0120880 | Msa1143370 | -0.830225 | 3.309777e-55 | -8.615850e-47 |
| Msa0138990 | Msa1143370 | 0.826580 | 2.508888e-54 | -8.615850e-47 |
| Msa0140770 | Msa1143370 | 0.855029 | 8.297364e-62 | -8.615850e-47 |
| Msa0154890 | Msa1143370 | 0.830356 | 3.075127e-55 | -8.615850e-47 |
| Msa0156760 | Msa1143370 | -0.801180 | 1.016605e-48 | -8.615850e-47 |
| Msa0183310 | Msa1143370 | 0.803749 | 3.004944e-49 | -8.615850e-47 |
| Msa0187590 | Msa1143370 | 0.802404 | 5.701856e-49 | -8.615850e-47 |
| Msa0189560 | Msa1143370 | 0.851140 | 1.077514e-60 | -8.615850e-47 |
| Msa0209140 | Msa1143370 | -0.804919 | 1.714456e-49 | -8.615850e-47 |
| Msa0220400 | Msa1143370 | 0.800774 | 1.230838e-48 | -8.615850e-47 |
| Msa0365210 | Msa1143370 | -0.832163 | 1.105959e-55 | -8.615850e-47 |
| Msa0370580 | Msa1143370 | 0.817847 | 2.666294e-52 | -8.615850e-47 |
| Msa0375330 | Msa1143370 | 0.818365 | 2.036330e-52 | -8.615850e-47 |
| Msa0380400 | Msa1143370 | 0.816214 | 6.207084e-52 | -8.615850e-47 |
| Msa0385930 | Msa1143370 | 0.857853 | 1.230047e-62 | -8.615850e-47 |
| Msa0476170 | Msa1143370 | 0.822464 | 2.335544e-53 | -8.615850e-47 |
| Msa0479760 | Msa1143370 | 0.852728 | 3.815965e-61 | -8.615850e-47 |
| Msa1039440 | Msa1143370 | 0.817787 | 2.751408e-52 | -8.615850e-47 |
| Msa1044250 | Msa1143370 | -0.805851 | 1.093536e-49 | -8.615850e-47 |
| Msa1085610 | Msa1143370 | 0.844937 | 5.547719e-59 | -8.615850e-47 |
| Msa1105460 | Msa1143370 | -0.801536 | 8.596915e-49 | -8.615850e-47 |
| Msa0258390 | Msa1143370 | -0.833656 | 4.705073e-56 | -8.615850e-47 |
| Msa0297610 | Msa1143370 | -0.830170 | 3.415015e-55 | -8.615850e-47 |
| Msa0320500 | Msa1143370 | -0.807054 | 6.096096e-50 | -8.615850e-47 |
| Msa0326170 | Msa1143370 | 0.821496 | 3.915129e-53 | -8.615850e-47 |
| Msa1123770 | Msa1143370 | -0.812619 | 3.869828e-51 | -8.615850e-47 |
| Msa1130060 | Msa1143370 | -0.814202 | 1.737048e-51 | -8.615850e-47 |
| Msa1143370 | Msa1150960 | -0.824361 | 8.413253e-54 | -8.615850e-47 |
| Msa1143370 | Msa1169910 | -0.814321 | 1.635339e-51 | -8.615850e-47 |
| Msa1143370 | Msa1225860 | 0.803035 | 4.224640e-49 | -8.615850e-47 |
| Msa1143370 | Msa1342960 | 0.826030 | 3.392492e-54 | -8.615850e-47 |
| Msa1143370 | Msa1348170 | 0.810341 | 1.209641e-50 | -8.615850e-47 |
| Msa1143370 | Msa1352600 | 0.801103 | 1.054498e-48 | -8.615850e-47 |
| Msa1143370 | Msa1356600 | 0.820981 | 5.146599e-53 | -8.615850e-47 |
| Msa1143370 | Msa1361670 | 0.801234 | 9.914065e-49 | -8.615850e-47 |
| Msa1143370 | Msa1368390 | -0.803733 | 3.028555e-49 | -8.615850e-47 |
| Msa1143370 | Msa1375610 | 0.810115 | 1.352911e-50 | -8.615850e-47 |
| Msa1143370 | Msa1376550 | 0.813716 | 2.223086e-51 | -8.615850e-47 |
| Msa1143370 | Msa1385720 | -0.815268 | 1.008584e-51 | -8.615850e-47 |
| Msa1143370 | Msa1428230 | 0.807642 | 4.575257e-50 | -8.615850e-47 |
| Msa1143370 | Msa1434090 | -0.808575 | 2.895204e-50 | -8.615850e-47 |
| Msa1143370 | Msa1445910 | 0.988855 | 1.100534e-175 | -8.615850e-47 |
| Msa0523430 | Msa1143370 | 0.874766 | 5.225267e-68 | -8.615850e-47 |
| Msa0523490 | Msa1143370 | 0.879714 | 9.942310e-70 | -8.615850e-47 |
| Msa0559450 | Msa1143370 | 0.801784 | 7.646200e-49 | -8.615850e-47 |
| Msa0576080 | Msa1143370 | 0.836080 | 1.153596e-56 | -8.615850e-47 |
| Msa0576090 | Msa1143370 | 0.821066 | 4.918124e-53 | -8.615850e-47 |
| Msa0576120 | Msa1143370 | 0.839063 | 1.982548e-57 | -8.615850e-47 |
| Msa0583360 | Msa1143370 | 0.805428 | 1.341497e-49 | -8.615850e-47 |
| Msa0862480 | Msa1143370 | 0.806886 | 6.615157e-50 | -8.615850e-47 |
| Msa0870460 | Msa1143370 | 0.804607 | 1.992180e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143370 | MtrunA17_Chr8g0378161 | 97.927 | 193 | 4 | 0 | 1 | 193 | 1 | 193 | 1.18e-142 | 395 |
| Msa1143370 | MtrunA17_Chr4g0050581 | 32.143 | 168 | 96 | 6 | 24 | 189 | 22 | 173 | 1.69e-17 | 76.3 |
| Msa1143370 | MtrunA17_Chr5g0405521 | 48.485 | 66 | 34 | 0 | 62 | 127 | 74 | 139 | 6.22e-15 | 69.3 |
| Msa1143370 | MtrunA17_Chr5g0405491 | 33.333 | 126 | 71 | 2 | 15 | 129 | 17 | 140 | 1.24e-14 | 68.6 |
| Msa1143370 | MtrunA17_Chr5g0405501 | 45.714 | 70 | 38 | 0 | 60 | 129 | 71 | 140 | 2.13e-14 | 67.8 |
| Msa1143370 | MtrunA17_Chr8g0371891 | 42.857 | 70 | 40 | 0 | 60 | 129 | 47 | 116 | 1.16e-13 | 65.1 |
| Msa1143370 | MtrunA17_Chr2g0333221 | 35.644 | 101 | 54 | 2 | 39 | 131 | 41 | 138 | 7.09e-13 | 66.2 |
| Msa1143370 | MtrunA17_Chr3g0103131 | 47.692 | 65 | 34 | 0 | 60 | 124 | 59 | 123 | 7.65e-13 | 63.5 |
| Msa1143370 | MtrunA17_Chr7g0271891 | 46.970 | 66 | 33 | 1 | 61 | 124 | 17 | 82 | 1.12e-12 | 63.2 |
| Msa1143370 | MtrunA17_Chr7g0269841 | 42.466 | 73 | 40 | 1 | 59 | 131 | 25 | 95 | 3.90e-12 | 63.9 |
| Msa1143370 | MtrunA17_Chr8g0344721 | 44.118 | 68 | 34 | 1 | 61 | 124 | 11 | 78 | 4.52e-12 | 62.8 |
| Msa1143370 | MtrunA17_Chr6g0478651 | 36.066 | 122 | 65 | 5 | 19 | 132 | 21 | 137 | 9.43e-12 | 63.2 |
| Msa1143370 | MtrunA17_Chr2g0328581 | 44.444 | 63 | 32 | 1 | 62 | 124 | 77 | 136 | 1.55e-11 | 60.8 |
| Msa1143370 | MtrunA17_Chr5g0426951 | 42.466 | 73 | 40 | 1 | 58 | 130 | 81 | 151 | 1.67e-11 | 62.4 |
| Msa1143370 | MtrunA17_Chr3g0138471 | 40.845 | 71 | 41 | 1 | 61 | 131 | 5 | 74 | 2.15e-11 | 61.6 |
| Msa1143370 | MtrunA17_Chr3g0123861 | 38.889 | 72 | 41 | 1 | 54 | 125 | 76 | 144 | 2.16e-11 | 62.0 |
| Msa1143370 | MtrunA17_Chr7g0253281 | 45.455 | 66 | 33 | 1 | 62 | 127 | 56 | 118 | 4.01e-11 | 60.8 |
| Msa1143370 | MtrunA17_Chr1g0206121 | 30.328 | 122 | 76 | 2 | 20 | 141 | 1 | 113 | 8.66e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1143370 | AT4G13830.2 | 51.010 | 198 | 84 | 5 | 1 | 190 | 1 | 193 | 5.71e-60 | 186 |
| Msa1143370 | AT4G13830.1 | 58.779 | 131 | 47 | 3 | 23 | 147 | 23 | 152 | 4.00e-43 | 142 |
| Msa1143370 | AT4G13830.3 | 58.015 | 131 | 48 | 3 | 23 | 147 | 23 | 152 | 9.31e-43 | 142 |
| Msa1143370 | AT4G36040.1 | 47.887 | 71 | 36 | 1 | 60 | 129 | 65 | 135 | 1.72e-14 | 68.2 |
| Msa1143370 | AT1G56300.2 | 46.269 | 67 | 34 | 1 | 60 | 124 | 13 | 79 | 1.55e-13 | 64.7 |
| Msa1143370 | AT3G13310.1 | 37.624 | 101 | 52 | 3 | 29 | 127 | 35 | 126 | 2.14e-13 | 65.1 |
| Msa1143370 | AT1G56300.1 | 46.269 | 67 | 34 | 1 | 60 | 124 | 13 | 79 | 2.43e-13 | 65.1 |
| Msa1143370 | AT2G17880.1 | 45.455 | 66 | 36 | 0 | 60 | 125 | 68 | 133 | 2.09e-12 | 62.8 |
| Msa1143370 | AT4G39960.1 | 41.892 | 74 | 40 | 1 | 61 | 134 | 86 | 156 | 5.17e-12 | 63.9 |
| Msa1143370 | AT4G39960.2 | 41.892 | 74 | 40 | 1 | 61 | 134 | 86 | 156 | 5.17e-12 | 63.9 |
| Msa1143370 | AT3G17830.1 | 36.364 | 121 | 68 | 5 | 20 | 137 | 23 | 137 | 7.67e-12 | 63.5 |
| Msa1143370 | AT3G62600.1 | 41.096 | 73 | 41 | 1 | 59 | 131 | 25 | 95 | 1.09e-11 | 62.8 |
| Msa1143370 | AT2G22360.1 | 40.541 | 74 | 41 | 1 | 61 | 134 | 87 | 157 | 1.27e-11 | 62.8 |
| Msa1143370 | AT3G14200.1 | 43.939 | 66 | 36 | 1 | 60 | 124 | 12 | 77 | 2.11e-11 | 61.2 |
| Msa1143370 | AT5G25530.2 | 40.845 | 71 | 41 | 1 | 61 | 131 | 5 | 74 | 2.65e-11 | 61.6 |
| Msa1143370 | AT1G80030.2 | 38.462 | 78 | 45 | 1 | 54 | 131 | 69 | 143 | 3.85e-11 | 61.6 |
| Msa1143370 | AT1G80030.3 | 38.462 | 78 | 45 | 1 | 54 | 131 | 69 | 143 | 3.85e-11 | 61.6 |
| Msa1143370 | AT1G80030.1 | 38.462 | 78 | 45 | 1 | 54 | 131 | 69 | 143 | 3.85e-11 | 61.6 |
| Msa1143370 | AT1G80030.4 | 38.462 | 78 | 45 | 1 | 54 | 131 | 69 | 143 | 4.28e-11 | 61.6 |
| Msa1143370 | AT1G59980.1 | 46.970 | 66 | 33 | 1 | 59 | 124 | 22 | 85 | 4.41e-11 | 61.2 |
| Msa1143370 | AT1G59980.2 | 46.970 | 66 | 33 | 1 | 59 | 124 | 22 | 85 | 4.68e-11 | 61.2 |
| Msa1143370 | AT1G59725.1 | 40.000 | 65 | 39 | 0 | 61 | 125 | 5 | 69 | 8.18e-11 | 60.5 |
| Msa1143370 | AT2G35720.1 | 33.000 | 100 | 66 | 1 | 59 | 157 | 14 | 113 | 9.34e-11 | 60.5 |
Find 82 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCCACTTGGTTATGTTTC+TGG | 0.145261 | 7_4:+18883232 | Msa1143370:three_prime_UTR |
| TATAATTAAATTAAACAAAA+TGG | 0.235071 | 7_4:-18883206 | None:intergenic |
| ACGGAGCTTCTACGATCTTC+TGG | 0.253540 | 7_4:+18879945 | Msa1143370:CDS |
| TGCTATCACTTCTTCTCTTC+AGG | 0.257402 | 7_4:-18882928 | None:intergenic |
| GTCCACTTGGTTATGTTTCT+GGG | 0.284680 | 7_4:+18883233 | Msa1143370:three_prime_UTR |
| TTCTAAACAAGTAAACTATA+TGG | 0.291258 | 7_4:-18883144 | None:intergenic |
| TCCATCAATGAACCGGATTC+TGG | 0.328084 | 7_4:-18879973 | None:intergenic |
| GTATACCAAGAGGTTTATTC+AGG | 0.341476 | 7_4:+18880068 | Msa1143370:CDS |
| TTGAAGGTGGCTCTAAGCTT+TGG | 0.367822 | 7_4:-18879901 | None:intergenic |
| CTGTTCAATTGTATGATTCA+AGG | 0.368756 | 7_4:-18879705 | None:intergenic |
| CGCCACCACGCCGTCGTTGA+AGG | 0.396835 | 7_4:-18879917 | None:intergenic |
| GGATGACCCGAATGAGATTC+GGG | 0.401935 | 7_4:-18879875 | None:intergenic |
| TGAAGGTGGCTCTAAGCTTT+GGG | 0.403440 | 7_4:-18879900 | None:intergenic |
| CCCATGACCCGAATCTCATT+CGG | 0.404157 | 7_4:+18879868 | Msa1143370:CDS |
| ACCAGAATCCGGTTCATTGA+TGG | 0.409355 | 7_4:+18879972 | Msa1143370:CDS |
| AGGATGACCCGAATGAGATT+CGG | 0.411788 | 7_4:-18879876 | None:intergenic |
| TCGGGTCATGGGTATGGTGG+TGG | 0.415955 | 7_4:-18879857 | None:intergenic |
| TTTGATATCCATCAATGAAC+CGG | 0.418110 | 7_4:-18879980 | None:intergenic |
| ATGAAGCGATAATCGCTTCC+GGG | 0.421198 | 7_4:-18879796 | None:intergenic |
| ATGCTATAATCATTCTGATC+AGG | 0.431312 | 7_4:+18880188 | Msa1143370:CDS |
| AAACTTTGTCTGATCCTTCA+AGG | 0.443921 | 7_4:+18880106 | Msa1143370:CDS |
| GAGAGAGAGATGCGTTGTTA+CGG | 0.451601 | 7_4:+18879763 | Msa1143370:exon |
| GATGAAGCGATAATCGCTTC+CGG | 0.453064 | 7_4:-18879797 | None:intergenic |
| GGATGTTTCACCACCGGATC+GGG | 0.463368 | 7_4:+18880038 | Msa1143370:CDS |
| CCCGAATGAGATTCGGGTCA+TGG | 0.464892 | 7_4:-18879869 | None:intergenic |
| TTATTAGGTGAGTGAACAAA+AGG | 0.466965 | 7_4:+18882868 | Msa1143370:intron |
| CCATGACCCGAATCTCATTC+GGG | 0.467417 | 7_4:+18879869 | Msa1143370:CDS |
| TCATACATAATCCTCCTTGA+AGG | 0.468151 | 7_4:-18880120 | None:intergenic |
| CGGAGCTTCTACGATCTTCT+GGG | 0.475758 | 7_4:+18879946 | Msa1143370:CDS |
| CAAGAGGTTTATTCAGGTGC+AGG | 0.475899 | 7_4:+18880074 | Msa1143370:CDS |
| CTTCAACGACGGCGTGGTGG+CGG | 0.476011 | 7_4:+18879918 | Msa1143370:CDS |
| TGAGTGAACAAAAGGATGAA+TGG | 0.478243 | 7_4:+18882876 | Msa1143370:CDS |
| CGGGTCATGGGTATGGTGGT+GGG | 0.482731 | 7_4:-18879856 | None:intergenic |
| CTCGAATACGCCAGCAGAGA+GGG | 0.484447 | 7_4:+18882987 | Msa1143370:CDS |
| GATTATGTATGATAGAGATA+TGG | 0.488939 | 7_4:+18880131 | Msa1143370:CDS |
| AGTGAAGGAGGAGGTAGTGT+TGG | 0.495639 | 7_4:-18879823 | None:intergenic |
| TGAGATTCGGGTCATGGGTA+TGG | 0.497946 | 7_4:-18879863 | None:intergenic |
| GGGTATGGTGGTGGGTCGGA+AGG | 0.500342 | 7_4:-18879848 | None:intergenic |
| CGATCCGGTGGTGAAACATC+CGG | 0.500626 | 7_4:-18880036 | None:intergenic |
| TCCACTTGGTTATGTTTCTG+GGG | 0.510926 | 7_4:+18883234 | Msa1143370:three_prime_UTR |
| GTATACTCTTCCACCCGATC+CGG | 0.515930 | 7_4:-18880051 | None:intergenic |
| CAACGACGGCGTGGTGGCGG+AGG | 0.521531 | 7_4:+18879921 | Msa1143370:CDS |
| GATCCGGTGGTGAAACATCC+GGG | 0.526103 | 7_4:-18880035 | None:intergenic |
| CCGAATGAGATTCGGGTCAT+GGG | 0.531452 | 7_4:-18879868 | None:intergenic |
| AAGAAGTGATAGCAAGGTCA+TGG | 0.532505 | 7_4:+18882937 | Msa1143370:CDS |
| CTTCTGGGCATACCAGAATC+CGG | 0.533025 | 7_4:+18879961 | Msa1143370:CDS |
| CGGATGTTTCACCACCGGAT+CGG | 0.539387 | 7_4:+18880037 | Msa1143370:CDS |
| TCGAATACGCCAGCAGAGAG+GGG | 0.542128 | 7_4:+18882988 | Msa1143370:CDS |
| CGGAAGGACAGTGAAGGAGG+AGG | 0.549643 | 7_4:-18879832 | None:intergenic |
| CTGCACCTGAATAAACCTCT+TGG | 0.549933 | 7_4:-18880073 | None:intergenic |
| CTTAGAGCCACCTTCAACGA+CGG | 0.551470 | 7_4:+18879907 | Msa1143370:CDS |
| TCATGGGTATGGTGGTGGGT+CGG | 0.552227 | 7_4:-18879852 | None:intergenic |
| ACGGCGTGGTGGCGGAGGAA+CGG | 0.572751 | 7_4:+18879926 | Msa1143370:CDS |
| CACCTTCAACGACGGCGTGG+TGG | 0.573318 | 7_4:+18879915 | Msa1143370:CDS |
| TGCTGCTGATAATACGTCAT+GGG | 0.573906 | 7_4:+18882961 | Msa1143370:CDS |
| CACCACGCCGTCGTTGAAGG+TGG | 0.581703 | 7_4:-18879914 | None:intergenic |
| GGTCGGAAGGACAGTGAAGG+AGG | 0.583185 | 7_4:-18879835 | None:intergenic |
| TGTTACGGCTTAACAATCCC+CGG | 0.585898 | 7_4:+18879778 | Msa1143370:CDS |
| TACTCTTCCACCCGATCCGG+TGG | 0.594060 | 7_4:-18880048 | None:intergenic |
| AGGATGAATGGAAATCTCGT+TGG | 0.596088 | 7_4:+18882888 | Msa1143370:CDS |
| TTAATTATAATCAGTCCACT+TGG | 0.596464 | 7_4:+18883220 | Msa1143370:three_prime_UTR |
| GAAGAGAAGAAGTGATAGCA+AGG | 0.602140 | 7_4:+18882931 | Msa1143370:CDS |
| GAGGTTTATTCAGGTGCAGG+AGG | 0.604858 | 7_4:+18880077 | Msa1143370:CDS |
| GCTCGAATACGCCAGCAGAG+AGG | 0.605654 | 7_4:+18882986 | Msa1143370:CDS |
| TGTTTCACCACCGGATCGGG+TGG | 0.605740 | 7_4:+18880041 | Msa1143370:CDS |
| ATGATAGAGATATGGCTAGA+GGG | 0.609573 | 7_4:+18880139 | Msa1143370:CDS |
| CGTTGGCAATCTCAACTCGA+TGG | 0.610624 | 7_4:+18882905 | Msa1143370:CDS |
| GTGGGTCGGAAGGACAGTGA+AGG | 0.611080 | 7_4:-18879838 | None:intergenic |
| GATTCGGGTCATGGGTATGG+TGG | 0.612358 | 7_4:-18879860 | None:intergenic |
| TATGATAGAGATATGGCTAG+AGG | 0.622164 | 7_4:+18880138 | Msa1143370:CDS |
| AATTAAACAAAATGGCAAAG+AGG | 0.626040 | 7_4:-18883198 | None:intergenic |
| TCACCCGGATGTTTCACCAC+CGG | 0.635031 | 7_4:+18880032 | Msa1143370:CDS |
| CGAATACGCCAGCAGAGAGG+GGG | 0.635411 | 7_4:+18882989 | Msa1143370:CDS |
| TGCTGATAATACGTCATGGG+CGG | 0.647620 | 7_4:+18882964 | Msa1143370:CDS |
| GGTGGCTCTAAGCTTTGGGA+AGG | 0.653939 | 7_4:-18879896 | None:intergenic |
| CTTTGTCTGATCCTTCAAGG+AGG | 0.657466 | 7_4:+18880109 | Msa1143370:CDS |
| AGCCACCTTCAACGACGGCG+TGG | 0.661105 | 7_4:+18879912 | Msa1143370:CDS |
| ATGCTGCTGATAATACGTCA+TGG | 0.662327 | 7_4:+18882960 | Msa1143370:CDS |
| TGAAGCGATAATCGCTTCCG+GGG | 0.671244 | 7_4:-18879795 | None:intergenic |
| ATTATACACATAGAGAACAA+AGG | 0.681965 | 7_4:-18883029 | None:intergenic |
| ACTTGCAAGAAAGTATCACC+CGG | 0.704249 | 7_4:+18880017 | Msa1143370:CDS |
| GGGTGGAAGAGTATACCAAG+AGG | 0.760271 | 7_4:+18880058 | Msa1143370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATGAAATATAAGAAAAAA+TGG | - | chr7_4:18880234-18880253 | None:intergenic | 10.0% |
| !! | GTTATTAATTATTATTTGTT+AGG | + | chr7_4:18880849-18880868 | Msa1143370:intron | 10.0% |
| !! | ATTATAATGAAATAAAAAAC+AGG | + | chr7_4:18882100-18882119 | Msa1143370:intron | 10.0% |
| !! | AGAAAAAATATAATTGATTA+TGG | - | chr7_4:18882217-18882236 | None:intergenic | 10.0% |
| !!! | TAATCAATTATATTTTTTCT+TGG | + | chr7_4:18882217-18882236 | Msa1143370:intron | 10.0% |
| !!! | ATTTTTATTTTTCATTGAAT+AGG | + | chr7_4:18882774-18882793 | Msa1143370:intron | 10.0% |
| !!! | TTTGATTTTTTTTCTTCTTA+TGG | + | chr7_4:18880257-18880276 | Msa1143370:intron | 15.0% |
| !!! | TTGATTTTTTTTCTTCTTAT+GGG | + | chr7_4:18880258-18880277 | Msa1143370:intron | 15.0% |
| !!! | TTTATGTTGATTTTTTGTTT+TGG | + | chr7_4:18880329-18880348 | Msa1143370:intron | 15.0% |
| !!! | TTTTTGAACTTTTATATGAT+TGG | + | chr7_4:18880444-18880463 | Msa1143370:intron | 15.0% |
| !!! | ATTTGATTTATACATACTAT+CGG | - | chr7_4:18880494-18880513 | None:intergenic | 15.0% |
| !! | TTGCTTAAAAATATCTTATA+TGG | + | chr7_4:18881179-18881198 | Msa1143370:intron | 15.0% |
| !!! | CAGTTTTTTGTAATAAAAAA+TGG | - | chr7_4:18881962-18881981 | None:intergenic | 15.0% |
| !! | TTACTTTGATTCTTATTAAA+AGG | - | chr7_4:18882016-18882035 | None:intergenic | 15.0% |
| !! | AAATATAATTGATTATGGAA+GGG | - | chr7_4:18882212-18882231 | None:intergenic | 15.0% |
| !! | AAAATATAATTGATTATGGA+AGG | - | chr7_4:18882213-18882232 | None:intergenic | 15.0% |
| !!! | TGATTTTTTTTCTTCTTATG+GGG | + | chr7_4:18880259-18880278 | Msa1143370:intron | 20.0% |
| !!! | GTTTATGTTTGTTATTGTTA+TGG | + | chr7_4:18880391-18880410 | Msa1143370:intron | 20.0% |
| !! | TGTTAAAGAGTTAATTGATA+TGG | + | chr7_4:18880419-18880438 | Msa1143370:intron | 20.0% |
| !!! | TTGTCAAGTTATATCATTTT+TGG | + | chr7_4:18880517-18880536 | Msa1143370:intron | 20.0% |
| !! | TTACAATTTATCAATCTGTT+CGG | + | chr7_4:18881436-18881455 | Msa1143370:intron | 20.0% |
| !! | AGTTGTATTAATTGTTAAGT+TGG | + | chr7_4:18882414-18882433 | Msa1143370:intron | 20.0% |
| !! | ATAATATAATCCTTGAATCA+TGG | + | chr7_4:18882644-18882663 | Msa1143370:intron | 20.0% |
| !! | TAAGTTATTGCTTTCTTATT+AGG | + | chr7_4:18882853-18882872 | Msa1143370:intron | 20.0% |
| !! | TTCTAAACAAGTAAACTATA+TGG | - | chr7_4:18883147-18883166 | None:intergenic | 20.0% |
| ! | GATTATGTATGATAGAGATA+TGG | + | chr7_4:18880131-18880150 | Msa1143370:CDS | 25.0% |
| ! | AATAAGCTGAAAATAGCTTA+TGG | + | chr7_4:18880658-18880677 | Msa1143370:intron | 25.0% |
| !!! | TATTTTTTTCTCCCTTTTTG+AGG | + | chr7_4:18880873-18880892 | Msa1143370:intron | 25.0% |
| ! | ACAAATTACAACCTCAAAAA+GGG | - | chr7_4:18880887-18880906 | None:intergenic | 25.0% |
| ! | AACAAATTACAACCTCAAAA+AGG | - | chr7_4:18880888-18880907 | None:intergenic | 25.0% |
| ! | AAAAGCTTCTCAAACAAAAA+AGG | - | chr7_4:18880974-18880993 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTGAGAAGCTTT+TGG | + | chr7_4:18880973-18880992 | Msa1143370:intron | 25.0% |
| ! | TACCATGCAAAATCAATTTA+AGG | - | chr7_4:18881063-18881082 | None:intergenic | 25.0% |
| !!! | TCCTTAAATTGATTTTGCAT+GGG | + | chr7_4:18881059-18881078 | Msa1143370:intron | 25.0% |
| !!! | ATGTTAAAATTAGTTTTGCC+TGG | + | chr7_4:18881209-18881228 | Msa1143370:intron | 25.0% |
| !!! | TGTTAAAATTAGTTTTGCCT+GGG | + | chr7_4:18881210-18881229 | Msa1143370:intron | 25.0% |
| ! | TCAATTATTAATGTGAGCTA+TGG | - | chr7_4:18881380-18881399 | None:intergenic | 25.0% |
| ! | ACATTAATAATTGAAGAGCT+TGG | + | chr7_4:18881386-18881405 | Msa1143370:intron | 25.0% |
| !! | ATAAATTGTAAGCTTTTCAG+GGG | - | chr7_4:18881427-18881446 | None:intergenic | 25.0% |
| !! | GATAAATTGTAAGCTTTTCA+GGG | - | chr7_4:18881428-18881447 | None:intergenic | 25.0% |
| !! | TGATAAATTGTAAGCTTTTC+AGG | - | chr7_4:18881429-18881448 | None:intergenic | 25.0% |
| ! | TACAATTTATCAATCTGTTC+GGG | + | chr7_4:18881437-18881456 | Msa1143370:intron | 25.0% |
| !!! | TGTGGTTTTATCATCATTTA+AGG | + | chr7_4:18881564-18881583 | Msa1143370:intron | 25.0% |
| !!! | AAGTTATTTTCCTACTGATT+TGG | + | chr7_4:18881719-18881738 | Msa1143370:intron | 25.0% |
| ! | GAACAAATATATATCAGAAC+TGG | + | chr7_4:18881751-18881770 | Msa1143370:intron | 25.0% |
| !!! | AGTATCATAATATTTTGAGG+AGG | + | chr7_4:18881783-18881802 | Msa1143370:intron | 25.0% |
| !! | CTCTTAGGTTCAAATATTTT+AGG | + | chr7_4:18881886-18881905 | Msa1143370:intron | 25.0% |
| ! | CAAAGTAAAAACAAAGTGAT+AGG | + | chr7_4:18882028-18882047 | Msa1143370:intron | 25.0% |
| ! | TTAAACTAATCACATAATCC+AGG | + | chr7_4:18882466-18882485 | Msa1143370:intron | 25.0% |
| !! | TACTGTTTTATGTACATAGA+AGG | + | chr7_4:18882743-18882762 | Msa1143370:intron | 25.0% |
| ! | ATTATACACATAGAGAACAA+AGG | - | chr7_4:18883032-18883051 | None:intergenic | 25.0% |
| ! | AATTAAACAAAATGGCAAAG+AGG | - | chr7_4:18883201-18883220 | None:intergenic | 25.0% |
| ! | TTAATTATAATCAGTCCACT+TGG | + | chr7_4:18883220-18883239 | Msa1143370:three_prime_UTR | 25.0% |
| CTGTTCAATTGTATGATTCA+AGG | - | chr7_4:18879708-18879727 | None:intergenic | 30.0% | |
| TTTGATATCCATCAATGAAC+CGG | - | chr7_4:18879983-18880002 | None:intergenic | 30.0% | |
| ATGCTATAATCATTCTGATC+AGG | + | chr7_4:18880188-18880207 | Msa1143370:CDS | 30.0% | |
| TACATACTATCGGTGTAAAA+AGG | - | chr7_4:18880484-18880503 | None:intergenic | 30.0% | |
| ! | ACTGTTTTCATAAGCTATTC+TGG | + | chr7_4:18880623-18880642 | Msa1143370:intron | 30.0% |
| TTATTGTGCAACTTCTATGT+TGG | + | chr7_4:18880933-18880952 | Msa1143370:intron | 30.0% | |
| !! | GTCCTTAAATTGATTTTGCA+TGG | + | chr7_4:18881058-18881077 | Msa1143370:intron | 30.0% |
| AACACAAGAATCATCTATGA+TGG | - | chr7_4:18881119-18881138 | None:intergenic | 30.0% | |
| !! | GTCCTTAAATTGATTTTGCA+TGG | + | chr7_4:18881058-18881077 | Msa1143370:intron | 30.0% |
| !! | CCTTAAATTGATTTTGCATG+GGG | + | chr7_4:18881060-18881079 | Msa1143370:intron | 30.0% |
| !!! | AGTGTTAATTTTTTCAACCC+AGG | - | chr7_4:18881230-18881249 | None:intergenic | 30.0% |
| ACAATTTATCAATCTGTTCG+GGG | + | chr7_4:18881438-18881457 | Msa1143370:intron | 30.0% | |
| TTTGATTACATGACATTGTG+TGG | + | chr7_4:18881546-18881565 | Msa1143370:intron | 30.0% | |
| !!! | GGGAGTATCATAATATTTTG+AGG | + | chr7_4:18881780-18881799 | Msa1143370:intron | 30.0% |
| ATTTGCTTAATCATGACTTC+TGG | + | chr7_4:18881812-18881831 | Msa1143370:intron | 30.0% | |
| !! | TTCTGGTTCCTGATATTTAT+CGG | + | chr7_4:18881829-18881848 | Msa1143370:intron | 30.0% |
| ATTTGAACCTAAGAGAAAGA+AGG | - | chr7_4:18881881-18881900 | None:intergenic | 30.0% | |
| TTAGGATGATGAAACACTTT+AGG | + | chr7_4:18881904-18881923 | Msa1143370:intron | 30.0% | |
| ! | CAAAGTGATAGGTACATTTT+AGG | + | chr7_4:18882039-18882058 | Msa1143370:intron | 30.0% |
| GAAATAAAAAACAGGCAACT+TGG | + | chr7_4:18882108-18882127 | Msa1143370:intron | 30.0% | |
| AGCAAAATGTCTTCAAGAAA+AGG | - | chr7_4:18882262-18882281 | None:intergenic | 30.0% | |
| CACACAAAAGGAAATGAATA+TGG | - | chr7_4:18882331-18882350 | None:intergenic | 30.0% | |
| TGTTGACATATACACACAAA+AGG | - | chr7_4:18882343-18882362 | None:intergenic | 30.0% | |
| !!! | ATAATCCAGGATGTTGTTTT+CGG | + | chr7_4:18882479-18882498 | Msa1143370:intron | 30.0% |
| ! | TTTTCATTGAATAGGACCTT+TGG | + | chr7_4:18882782-18882801 | Msa1143370:intron | 30.0% |
| TTTCATTGAATAGGACCTTT+GGG | + | chr7_4:18882783-18882802 | Msa1143370:intron | 30.0% | |
| TTATTAGGTGAGTGAACAAA+AGG | + | chr7_4:18882868-18882887 | Msa1143370:intron | 30.0% | |
| GTATACCAAGAGGTTTATTC+AGG | + | chr7_4:18880068-18880087 | Msa1143370:CDS | 35.0% | |
| AAACTTTGTCTGATCCTTCA+AGG | + | chr7_4:18880106-18880125 | Msa1143370:CDS | 35.0% | |
| TCATACATAATCCTCCTTGA+AGG | - | chr7_4:18880123-18880142 | None:intergenic | 35.0% | |
| TATGATAGAGATATGGCTAG+AGG | + | chr7_4:18880138-18880157 | Msa1143370:CDS | 35.0% | |
| ATGATAGAGATATGGCTAGA+GGG | + | chr7_4:18880139-18880158 | Msa1143370:CDS | 35.0% | |
| AAAACAATGAAGGGTCACTT+TGG | - | chr7_4:18880767-18880786 | None:intergenic | 35.0% | |
| ! | ACCCTTCATTGTTTTCATCT+GGG | + | chr7_4:18880772-18880791 | Msa1143370:intron | 35.0% |
| TCCCAGATGAAAACAATGAA+GGG | - | chr7_4:18880776-18880795 | None:intergenic | 35.0% | |
| ! | TTCATTGTTTTCATCTGGGA+GGG | + | chr7_4:18880776-18880795 | Msa1143370:intron | 35.0% |
| ! | TTTGTCAAGGTTCTGATTTG+TGG | + | chr7_4:18880803-18880822 | Msa1143370:intron | 35.0% |
| ! | TCTCATGTTTTGTCAGTGTA+TGG | + | chr7_4:18880907-18880926 | Msa1143370:intron | 35.0% |
| ! | ATGCTCTTTTTACACCATCA+TGG | + | chr7_4:18881017-18881036 | Msa1143370:intron | 35.0% |
| AACACAAGAATCATCCATGA+TGG | - | chr7_4:18881034-18881053 | None:intergenic | 35.0% | |
| ATGGTATCTCAAGCAAGTTT+AGG | + | chr7_4:18881077-18881096 | Msa1143370:intron | 35.0% | |
| CCCCATGCAAAATCAATTTA+AGG | - | chr7_4:18881148-18881167 | None:intergenic | 35.0% | |
| !! | TTATTTTGCAGTGGAAAACC+CGG | - | chr7_4:18881482-18881501 | None:intergenic | 35.0% |
| !!! | CAGATTAGCTTATTTTGCAG+TGG | - | chr7_4:18881491-18881510 | None:intergenic | 35.0% |
| AAACTTTCACAGAACTGAGA+TGG | + | chr7_4:18881644-18881663 | Msa1143370:intron | 35.0% | |
| CCTAAGATAACCAAATCAGT+AGG | - | chr7_4:18881732-18881751 | None:intergenic | 35.0% | |
| !! | CCTACTGATTTGGTTATCTT+AGG | + | chr7_4:18881729-18881748 | Msa1143370:intron | 35.0% |
| ATATATCAGAACTGGACTGT+AGG | + | chr7_4:18881759-18881778 | Msa1143370:intron | 35.0% | |
| TATATCAGAACTGGACTGTA+GGG | + | chr7_4:18881760-18881779 | Msa1143370:intron | 35.0% | |
| AAAAACAGGCAACTTGGTTT+AGG | + | chr7_4:18882114-18882133 | Msa1143370:intron | 35.0% | |
| AAAACAGGCAACTTGGTTTA+GGG | + | chr7_4:18882115-18882134 | Msa1143370:intron | 35.0% | |
| !! | GTGTAACTGACTTACGTTTT+GGG | + | chr7_4:18882137-18882156 | Msa1143370:intron | 35.0% |
| ! | GCTTGTATGAGAGTATGTTA+CGG | + | chr7_4:18882279-18882298 | Msa1143370:intron | 35.0% |
| !! | ACTAACTTGTTCAGTGTTTG+TGG | - | chr7_4:18882383-18882402 | None:intergenic | 35.0% |
| TGATTCGTTACCATGATTCA+AGG | - | chr7_4:18882657-18882676 | None:intergenic | 35.0% | |
| ! | AATGACCCTATCTCTTTTGA+AGG | - | chr7_4:18882682-18882701 | None:intergenic | 35.0% |
| TTCATTGAATAGGACCTTTG+GGG | + | chr7_4:18882784-18882803 | Msa1143370:intron | 35.0% | |
| TGAGTGAACAAAAGGATGAA+TGG | + | chr7_4:18882876-18882895 | Msa1143370:CDS | 35.0% | |
| !!! | GCAAAGAGGCACATTTTTTT+TGG | - | chr7_4:18883187-18883206 | None:intergenic | 35.0% |
| !! | ACTTGCAAGAAAGTATCACC+CGG | + | chr7_4:18880017-18880036 | Msa1143370:CDS | 40.0% |
| ! | GACCCTTCATTGTTTTCATC+TGG | + | chr7_4:18880771-18880790 | Msa1143370:intron | 40.0% |
| CTCCCAGATGAAAACAATGA+AGG | - | chr7_4:18880777-18880796 | None:intergenic | 40.0% | |
| ! | CTTCATTGTTTTCATCTGGG+AGG | + | chr7_4:18880775-18880794 | Msa1143370:intron | 40.0% |
| GTAGAGCTTATGACTGAAAC+CGG | + | chr7_4:18881460-18881479 | Msa1143370:intron | 40.0% | |
| TAGAGCTTATGACTGAAACC+GGG | + | chr7_4:18881461-18881480 | Msa1143370:intron | 40.0% | |
| TTAAGGCTTCCTCCTTATCT+TGG | + | chr7_4:18881581-18881600 | Msa1143370:intron | 40.0% | |
| !!! | ATTTTGGCTCAGCCAAGATA+AGG | - | chr7_4:18881596-18881615 | None:intergenic | 40.0% |
| CTCAGTTCTGTGAAAGTTTC+AGG | - | chr7_4:18881643-18881662 | None:intergenic | 40.0% | |
| !! | CTCAAGCACCGATAAATATC+AGG | - | chr7_4:18881840-18881859 | None:intergenic | 40.0% |
| ! | CTGATATTTATCGGTGCTTG+AGG | + | chr7_4:18881838-18881857 | Msa1143370:intron | 40.0% |
| GAAAGAAGGAGATAGCACAA+AGG | - | chr7_4:18881867-18881886 | None:intergenic | 40.0% | |
| GCTATCTCCTTCTTTCTCTT+AGG | + | chr7_4:18881871-18881890 | Msa1143370:intron | 40.0% | |
| !! | GGTACATTTTAGGTGTGCTT+TGG | + | chr7_4:18882049-18882068 | Msa1143370:intron | 40.0% |
| !! | GGTGTAACTGACTTACGTTT+TGG | + | chr7_4:18882136-18882155 | Msa1143370:intron | 40.0% |
| ! | AACTTGTTCAGTGTTTGTGG+TGG | - | chr7_4:18882380-18882399 | None:intergenic | 40.0% |
| ACAATCCGAAAACAACATCC+TGG | - | chr7_4:18882487-18882506 | None:intergenic | 40.0% | |
| AGTCGATTAGAGAATGAGTC+AGG | + | chr7_4:18882514-18882533 | Msa1143370:intron | 40.0% | |
| ATCACGCCTTCAAAAGAGAT+AGG | + | chr7_4:18882673-18882692 | Msa1143370:intron | 40.0% | |
| TCACGCCTTCAAAAGAGATA+GGG | + | chr7_4:18882674-18882693 | Msa1143370:intron | 40.0% | |
| TCATTGAATAGGACCTTTGG+GGG | + | chr7_4:18882785-18882804 | Msa1143370:intron | 40.0% | |
| AGGATGAATGGAAATCTCGT+TGG | + | chr7_4:18882888-18882907 | Msa1143370:CDS | 40.0% | |
| TGCTATCACTTCTTCTCTTC+AGG | - | chr7_4:18882931-18882950 | None:intergenic | 40.0% | |
| GAAGAGAAGAAGTGATAGCA+AGG | + | chr7_4:18882931-18882950 | Msa1143370:CDS | 40.0% | |
| AAGAAGTGATAGCAAGGTCA+TGG | + | chr7_4:18882937-18882956 | Msa1143370:CDS | 40.0% | |
| ATGCTGCTGATAATACGTCA+TGG | + | chr7_4:18882960-18882979 | Msa1143370:CDS | 40.0% | |
| TGCTGCTGATAATACGTCAT+GGG | + | chr7_4:18882961-18882980 | Msa1143370:CDS | 40.0% | |
| GAGAGAGAGATGCGTTGTTA+CGG | + | chr7_4:18879763-18879782 | Msa1143370:exon | 45.0% | |
| TGTTACGGCTTAACAATCCC+CGG | + | chr7_4:18879778-18879797 | Msa1143370:CDS | 45.0% | |
| ATGAAGCGATAATCGCTTCC+GGG | - | chr7_4:18879799-18879818 | None:intergenic | 45.0% | |
| GATGAAGCGATAATCGCTTC+CGG | - | chr7_4:18879800-18879819 | None:intergenic | 45.0% | |
| AGGATGACCCGAATGAGATT+CGG | - | chr7_4:18879879-18879898 | None:intergenic | 45.0% | |
| !! | TGAAGGTGGCTCTAAGCTTT+GGG | - | chr7_4:18879903-18879922 | None:intergenic | 45.0% |
| !! | TTGAAGGTGGCTCTAAGCTT+TGG | - | chr7_4:18879904-18879923 | None:intergenic | 45.0% |
| ACCAGAATCCGGTTCATTGA+TGG | + | chr7_4:18879972-18879991 | Msa1143370:CDS | 45.0% | |
| TCCATCAATGAACCGGATTC+TGG | - | chr7_4:18879976-18879995 | None:intergenic | 45.0% | |
| CTGCACCTGAATAAACCTCT+TGG | - | chr7_4:18880076-18880095 | None:intergenic | 45.0% | |
| CAAGAGGTTTATTCAGGTGC+AGG | + | chr7_4:18880074-18880093 | Msa1143370:CDS | 45.0% | |
| CTTTGTCTGATCCTTCAAGG+AGG | + | chr7_4:18880109-18880128 | Msa1143370:CDS | 45.0% | |
| CATTGAATAGGACCTTTGGG+GGG | + | chr7_4:18882786-18882805 | Msa1143370:intron | 45.0% | |
| TGCTGATAATACGTCATGGG+CGG | + | chr7_4:18882964-18882983 | Msa1143370:CDS | 45.0% | |
| !!! | TTAATAAATTTTCATAATTT+TGG | - | chr7_4:18881612-18881631 | None:intergenic | 5.0% |
| !!! | TAATAAATTATAAATTGTTT+TGG | - | chr7_4:18882081-18882100 | None:intergenic | 5.0% |
| !! | TATAATTAAATTAAACAAAA+TGG | - | chr7_4:18883209-18883228 | None:intergenic | 5.0% |
| TGAAGCGATAATCGCTTCCG+GGG | - | chr7_4:18879798-18879817 | None:intergenic | 50.0% | |
| AGTGAAGGAGGAGGTAGTGT+TGG | - | chr7_4:18879826-18879845 | None:intergenic | 50.0% | |
| TGAGATTCGGGTCATGGGTA+TGG | - | chr7_4:18879866-18879885 | None:intergenic | 50.0% | |
| CCGAATGAGATTCGGGTCAT+GGG | - | chr7_4:18879871-18879890 | None:intergenic | 50.0% | |
| CCCATGACCCGAATCTCATT+CGG | + | chr7_4:18879868-18879887 | Msa1143370:CDS | 50.0% | |
| CCATGACCCGAATCTCATTC+GGG | + | chr7_4:18879869-18879888 | Msa1143370:CDS | 50.0% | |
| GGATGACCCGAATGAGATTC+GGG | - | chr7_4:18879878-18879897 | None:intergenic | 50.0% | |
| CTTAGAGCCACCTTCAACGA+CGG | + | chr7_4:18879907-18879926 | Msa1143370:CDS | 50.0% | |
| ACGGAGCTTCTACGATCTTC+TGG | + | chr7_4:18879945-18879964 | Msa1143370:CDS | 50.0% | |
| CGGAGCTTCTACGATCTTCT+GGG | + | chr7_4:18879946-18879965 | Msa1143370:CDS | 50.0% | |
| CTTCTGGGCATACCAGAATC+CGG | + | chr7_4:18879961-18879980 | Msa1143370:CDS | 50.0% | |
| GTATACTCTTCCACCCGATC+CGG | - | chr7_4:18880054-18880073 | None:intergenic | 50.0% | |
| ! | GGGTGGAAGAGTATACCAAG+AGG | + | chr7_4:18880058-18880077 | Msa1143370:CDS | 50.0% |
| GAGGTTTATTCAGGTGCAGG+AGG | + | chr7_4:18880077-18880096 | Msa1143370:CDS | 50.0% | |
| !! | CTGGGAGGGTTGATTTGTCA+AGG | + | chr7_4:18880790-18880809 | Msa1143370:intron | 50.0% |
| TTGGCTCAGCCAAGATAAGG+AGG | - | chr7_4:18881593-18881612 | None:intergenic | 50.0% | |
| ! | AGTGTTTGTGGTGGTGAGCT+GGG | - | chr7_4:18882371-18882390 | None:intergenic | 50.0% |
| ! | AATAGGACCTTTGGGGGGAT+TGG | + | chr7_4:18882791-18882810 | Msa1143370:intron | 50.0% |
| CGTTGGCAATCTCAACTCGA+TGG | + | chr7_4:18882905-18882924 | Msa1143370:CDS | 50.0% | |
| !! | TCATGGGTATGGTGGTGGGT+CGG | - | chr7_4:18879855-18879874 | None:intergenic | 55.0% |
| GATTCGGGTCATGGGTATGG+TGG | - | chr7_4:18879863-18879882 | None:intergenic | 55.0% | |
| CCCGAATGAGATTCGGGTCA+TGG | - | chr7_4:18879872-18879891 | None:intergenic | 55.0% | |
| !! | GGTGGCTCTAAGCTTTGGGA+AGG | - | chr7_4:18879899-18879918 | None:intergenic | 55.0% |
| TCACCCGGATGTTTCACCAC+CGG | + | chr7_4:18880032-18880051 | Msa1143370:CDS | 55.0% | |
| GATCCGGTGGTGAAACATCC+GGG | - | chr7_4:18880038-18880057 | None:intergenic | 55.0% | |
| CGATCCGGTGGTGAAACATC+CGG | - | chr7_4:18880039-18880058 | None:intergenic | 55.0% | |
| CGGATGTTTCACCACCGGAT+CGG | + | chr7_4:18880037-18880056 | Msa1143370:CDS | 55.0% | |
| GGATGTTTCACCACCGGATC+GGG | + | chr7_4:18880038-18880057 | Msa1143370:CDS | 55.0% | |
| ! | CAGTGTTTGTGGTGGTGAGC+TGG | - | chr7_4:18882372-18882391 | None:intergenic | 55.0% |
| CTTCTAGCCAATCCCCCCAA+AGG | - | chr7_4:18882801-18882820 | None:intergenic | 55.0% | |
| CTCGAATACGCCAGCAGAGA+GGG | + | chr7_4:18882987-18883006 | Msa1143370:CDS | 55.0% | |
| TCGAATACGCCAGCAGAGAG+GGG | + | chr7_4:18882988-18883007 | Msa1143370:CDS | 55.0% | |
| CGGAAGGACAGTGAAGGAGG+AGG | - | chr7_4:18879835-18879854 | None:intergenic | 60.0% | |
| GGTCGGAAGGACAGTGAAGG+AGG | - | chr7_4:18879838-18879857 | None:intergenic | 60.0% | |
| GTGGGTCGGAAGGACAGTGA+AGG | - | chr7_4:18879841-18879860 | None:intergenic | 60.0% | |
| CGGGTCATGGGTATGGTGGT+GGG | - | chr7_4:18879859-18879878 | None:intergenic | 60.0% | |
| TCGGGTCATGGGTATGGTGG+TGG | - | chr7_4:18879860-18879879 | None:intergenic | 60.0% | |
| TGTTTCACCACCGGATCGGG+TGG | + | chr7_4:18880041-18880060 | Msa1143370:CDS | 60.0% | |
| TACTCTTCCACCCGATCCGG+TGG | - | chr7_4:18880051-18880070 | None:intergenic | 60.0% | |
| GCTCGAATACGCCAGCAGAG+AGG | + | chr7_4:18882986-18883005 | Msa1143370:CDS | 60.0% | |
| CGAATACGCCAGCAGAGAGG+GGG | + | chr7_4:18882989-18883008 | Msa1143370:CDS | 60.0% | |
| GTCACAATCCCCCTCTCTGC+TGG | - | chr7_4:18883000-18883019 | None:intergenic | 60.0% | |
| !! | GGGTATGGTGGTGGGTCGGA+AGG | - | chr7_4:18879851-18879870 | None:intergenic | 65.0% |
| AGCCACCTTCAACGACGGCG+TGG | + | chr7_4:18879912-18879931 | Msa1143370:CDS | 65.0% | |
| CACCACGCCGTCGTTGAAGG+TGG | - | chr7_4:18879917-18879936 | None:intergenic | 65.0% | |
| CACCTTCAACGACGGCGTGG+TGG | + | chr7_4:18879915-18879934 | Msa1143370:CDS | 65.0% | |
| CTTCAACGACGGCGTGGTGG+CGG | + | chr7_4:18879918-18879937 | Msa1143370:CDS | 65.0% | |
| CGCCACCACGCCGTCGTTGA+AGG | - | chr7_4:18879920-18879939 | None:intergenic | 70.0% | |
| !! | ACGGCGTGGTGGCGGAGGAA+CGG | + | chr7_4:18879926-18879945 | Msa1143370:CDS | 70.0% |
| !! | CAACGACGGCGTGGTGGCGG+AGG | + | chr7_4:18879921-18879940 | Msa1143370:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 18879677 | 18883253 | 18879677 | ID=Msa1143370;Name=Msa1143370 |
| chr7_4 | mRNA | 18879677 | 18883253 | 18879677 | ID=Msa1143370-mRNA-1;Parent=Msa1143370;Name=Msa1143370-mRNA-1;_AED=0.00;_eAED=0.00;_QI=95|1|1|1|1|1|2|235|193 |
| chr7_4 | exon | 18879677 | 18880209 | 18879677 | ID=Msa1143370-mRNA-1:exon:4149;Parent=Msa1143370-mRNA-1 |
| chr7_4 | exon | 18882875 | 18883253 | 18882875 | ID=Msa1143370-mRNA-1:exon:4150;Parent=Msa1143370-mRNA-1 |
| chr7_4 | five_prime_UTR | 18879677 | 18879771 | 18879677 | ID=Msa1143370-mRNA-1:five_prime_utr;Parent=Msa1143370-mRNA-1 |
| chr7_4 | CDS | 18879772 | 18880209 | 18879772 | ID=Msa1143370-mRNA-1:cds;Parent=Msa1143370-mRNA-1 |
| chr7_4 | CDS | 18882875 | 18883018 | 18882875 | ID=Msa1143370-mRNA-1:cds;Parent=Msa1143370-mRNA-1 |
| chr7_4 | three_prime_UTR | 18883019 | 18883253 | 18883019 | ID=Msa1143370-mRNA-1:three_prime_utr;Parent=Msa1143370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
