Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012126.t1 | XP_013446346.2 | 87.5 | 288 | 36 | 0 | 1 | 288 | 1 | 288 | 3.20E-96 | 361.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012126.t1 | Q9LUJ5 | 62.3 | 207 | 77 | 1 | 35 | 240 | 41 | 247 | 2.8e-40 | 167.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012126.t1 | A0A396GLQ3 | 87.5 | 288 | 36 | 0 | 1 | 288 | 1 | 288 | 2.3e-96 | 361.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012126.t1 | MTR_5g028350 | 86.159 | 289 | 37 | 2 | 1 | 286 | 1 | 289 | 5.96e-171 | 474 |
MS.gene012126.t1 | MTR_8g075400 | 87.108 | 287 | 10 | 2 | 1 | 287 | 14 | 273 | 5.10e-164 | 456 |
MS.gene012126.t1 | MTR_8g075400 | 98.198 | 222 | 4 | 0 | 1 | 222 | 1 | 222 | 5.39e-159 | 443 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012126.t1 | AT3G22660 | 64.583 | 288 | 95 | 3 | 2 | 288 | 12 | 293 | 7.03e-126 | 360 |
Find 69 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGCCTCCAAAGCCAAATT+TGG | 0.135328 | 8.4:-29801669 | None:intergenic |
GCTGATACTACTAATGATTT+TGG | 0.192046 | 8.4:+29801716 | MS.gene012126:CDS |
GATGTTAAGAATTCCAAATT+TGG | 0.278385 | 8.4:+29801656 | MS.gene012126:CDS |
ATTAGCTGAACCATCTAAAA+AGG | 0.298870 | 8.4:+29801028 | MS.gene012126:CDS |
AGAAAGGGCCAAGCAGAAAA+AGG | 0.337714 | 8.4:+29801430 | MS.gene012126:CDS |
TGTATCCATTCCACATTCTC+TGG | 0.362791 | 8.4:-29801101 | None:intergenic |
AATTCCAAATTTGGCTTTGG+AGG | 0.373337 | 8.4:+29801665 | MS.gene012126:CDS |
AAGAATTCCAAATTTGGCTT+TGG | 0.378859 | 8.4:+29801662 | MS.gene012126:CDS |
CTGAAGAGAGAAGAAAGGCC+AGG | 0.422247 | 8.4:+29801363 | MS.gene012126:CDS |
GAAAAGACCTGGAGTGTCTC+CGG | 0.423295 | 8.4:+29801571 | MS.gene012126:CDS |
AGATAATCTCTTGGCCTCCC+TGG | 0.430466 | 8.4:-29801381 | None:intergenic |
AGTCACAGAAATTAAAAGAA+AGG | 0.442695 | 8.4:+29801414 | MS.gene012126:CDS |
GTGTCTCCGGGTGACCGATC+AGG | 0.444973 | 8.4:+29801584 | MS.gene012126:CDS |
TAGTCTGCAGGCCTTAGAAA+AGG | 0.445288 | 8.4:-29801257 | None:intergenic |
CTTTGAGAAACTTCAGTCAA+TGG | 0.454306 | 8.4:+29801229 | MS.gene012126:CDS |
CGATGGCGCAGATAAGGCTT+TGG | 0.456534 | 8.4:+29801511 | MS.gene012126:CDS |
TGCAGACTATTATGCTGAAA+TGG | 0.457564 | 8.4:+29801271 | MS.gene012126:CDS |
CTGCTCTTGATCGATGTCAA+TGG | 0.460523 | 8.4:-29801132 | None:intergenic |
GTCACAGAAATTAAAAGAAA+GGG | 0.462057 | 8.4:+29801415 | MS.gene012126:CDS |
GGTAAGGCAAAGCAAGCCTT+TGG | 0.462245 | 8.4:+29801608 | MS.gene012126:CDS |
TGGCTTCTTTCCCTTTCCAA+AGG | 0.463981 | 8.4:-29801624 | None:intergenic |
TGCTGACGATGGCGCAGATA+AGG | 0.473187 | 8.4:+29801505 | MS.gene012126:CDS |
TTTGAGAAACTTCAGTCAAT+GGG | 0.475684 | 8.4:+29801230 | MS.gene012126:CDS |
ACATTGAATCTGTTAAGAAA+TGG | 0.479309 | 8.4:+29801456 | MS.gene012126:CDS |
GAGGAAGTAAGAAGAGAAAG+AGG | 0.489339 | 8.4:+29801765 | MS.gene012126:CDS |
GCAAAGCAAGCCTTTGGAAA+GGG | 0.492131 | 8.4:+29801614 | MS.gene012126:CDS |
AATGATGATACAATGGTTGA+TGG | 0.492459 | 8.4:+29800942 | MS.gene012126:CDS |
AACCTCTTTAGATAATCTCT+TGG | 0.505477 | 8.4:-29801390 | None:intergenic |
TTACCTCCTGATCGGTCACC+CGG | 0.505687 | 8.4:-29801590 | None:intergenic |
TTTGGCTTTGGAGGCAAGAA+GGG | 0.507591 | 8.4:+29801674 | MS.gene012126:CDS |
CATAAGCTGGCCAGAGAATG+TGG | 0.514747 | 8.4:+29801091 | MS.gene012126:CDS |
AGATAAGGCTTTGGACTTCG+AGG | 0.515894 | 8.4:+29801520 | MS.gene012126:CDS |
AGATTGAATGGAGCTGCCTC+TGG | 0.515931 | 8.4:+29800917 | None:intergenic |
GGCATTGGAGGGTACTAGAC+AGG | 0.518118 | 8.4:+29801205 | MS.gene012126:CDS |
TCTTCTGATTCTGATTCAGA+TGG | 0.519325 | 8.4:-29800996 | None:intergenic |
ATTTGGCTTTGGAGGCAAGA+AGG | 0.519353 | 8.4:+29801673 | MS.gene012126:CDS |
GCTTTGCCTTACCTCCTGAT+CGG | 0.526130 | 8.4:-29801598 | None:intergenic |
AGAGGCTGAAGAGAGAAGAA+AGG | 0.526636 | 8.4:+29801358 | MS.gene012126:CDS |
GATGCTCTATTAGATAAACT+TGG | 0.532375 | 8.4:+29801065 | MS.gene012126:CDS |
AAAAGACCTGGAGTGTCTCC+GGG | 0.535827 | 8.4:+29801572 | MS.gene012126:CDS |
ATTAGCAGAGAAGCAGAAGA+TGG | 0.537363 | 8.4:+29801334 | MS.gene012126:CDS |
AGTCTGCAGGCCTTAGAAAA+GGG | 0.538151 | 8.4:-29801256 | None:intergenic |
CGGTCAAAGAAGAAAAGACC+TGG | 0.554286 | 8.4:+29801560 | MS.gene012126:CDS |
ATTTCAGCATAATAGTCTGC+AGG | 0.562441 | 8.4:-29801269 | None:intergenic |
TGAAGAGAGAAGAAAGGCCA+GGG | 0.563172 | 8.4:+29801364 | MS.gene012126:CDS |
CATTGACATCGATCAAGAGC+AGG | 0.572289 | 8.4:+29801133 | MS.gene012126:CDS |
ATAAACTTGGAGACATAAGC+TGG | 0.573791 | 8.4:+29801078 | MS.gene012126:CDS |
GGGTGACCGATCAGGAGGTA+AGG | 0.574615 | 8.4:+29801592 | MS.gene012126:CDS |
CGGTCACCCGGAGACACTCC+AGG | 0.576723 | 8.4:-29801578 | None:intergenic |
GGCCAAGAGATTATCTAAAG+AGG | 0.579968 | 8.4:+29801388 | MS.gene012126:CDS |
GGCAAAGCAAGCCTTTGGAA+AGG | 0.581107 | 8.4:+29801613 | MS.gene012126:CDS |
AGAGAAGCAGAAGATGGTAG+AGG | 0.581371 | 8.4:+29801340 | MS.gene012126:CDS |
AGTAGATGTTAATGATGACT+TGG | 0.588825 | 8.4:+29801157 | MS.gene012126:CDS |
TTGAATCTGTTAAGAAATGG+AGG | 0.588933 | 8.4:+29801459 | MS.gene012126:CDS |
TTTGGACTTCGAGGACGGAA+AGG | 0.593158 | 8.4:+29801529 | MS.gene012126:CDS |
AGGAAGCAGAGGCAACAAAG+TGG | 0.602796 | 8.4:+29801479 | MS.gene012126:CDS |
AAGGCTTTGGACTTCGAGGA+CGG | 0.606211 | 8.4:+29801524 | MS.gene012126:CDS |
GGAAGCAGAGGCAACAAAGT+GGG | 0.615514 | 8.4:+29801480 | MS.gene012126:CDS |
CAAAGTGGGTTTGCTGACGA+TGG | 0.619387 | 8.4:+29801494 | MS.gene012126:CDS |
TTAAGAAATGGAGGAAGCAG+AGG | 0.621715 | 8.4:+29801468 | MS.gene012126:CDS |
CATTGACTGAAGTTTCTCAA+AGG | 0.625618 | 8.4:-29801228 | None:intergenic |
TCTCCGGGTGACCGATCAGG+AGG | 0.644315 | 8.4:+29801587 | MS.gene012126:CDS |
GCTGGCCAGAGAATGTGGAA+TGG | 0.647233 | 8.4:+29801096 | MS.gene012126:CDS |
AGAGAGAAGAAAGGCCAGGG+AGG | 0.661477 | 8.4:+29801367 | MS.gene012126:CDS |
TCTGGTTAATGATGATACAA+TGG | 0.663757 | 8.4:+29800935 | MS.gene012126:CDS |
ATTGTATCATCATTAACCAG+AGG | 0.690136 | 8.4:-29800933 | None:intergenic |
TGAAGCTGAGTATTTGAGTG+AGG | 0.691291 | 8.4:+29800965 | MS.gene012126:CDS |
AGGACGGAAAGGTGTTCGAG+CGG | 0.718016 | 8.4:+29801540 | MS.gene012126:CDS |
GGTGAAGACAGATAGCCACA+TGG | 0.738846 | 8.4:+29801292 | MS.gene012126:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | ACATTGAATCTGTTAAGAAA+TGG | + | chr8.4:29801456-29801475 | MS.gene012126:CDS | 25.0% |
! | AGTCACAGAAATTAAAAGAA+AGG | + | chr8.4:29801414-29801433 | MS.gene012126:CDS | 25.0% |
! | GATGTTAAGAATTCCAAATT+TGG | + | chr8.4:29801656-29801675 | MS.gene012126:CDS | 25.0% |
! | GTCACAGAAATTAAAAGAAA+GGG | + | chr8.4:29801415-29801434 | MS.gene012126:CDS | 25.0% |
!! | TTATTTACTGCCTTTTTAGA+TGG | - | chr8.4:29801041-29801060 | None:intergenic | 25.0% |
!! | TTCTTAACATCTCTTTTCTT+TGG | - | chr8.4:29801647-29801666 | None:intergenic | 25.0% |
AACCTCTTTAGATAATCTCT+TGG | - | chr8.4:29801393-29801412 | None:intergenic | 30.0% | |
AATGATGATACAATGGTTGA+TGG | + | chr8.4:29800942-29800961 | MS.gene012126:CDS | 30.0% | |
ACATGGAAAAAGTGAAAAGT+CGG | + | chr8.4:29801309-29801328 | MS.gene012126:CDS | 30.0% | |
AGTAGATGTTAATGATGACT+TGG | + | chr8.4:29801157-29801176 | MS.gene012126:CDS | 30.0% | |
ATTAGCTGAACCATCTAAAA+AGG | + | chr8.4:29801028-29801047 | MS.gene012126:CDS | 30.0% | |
ATTGTATCATCATTAACCAG+AGG | - | chr8.4:29800936-29800955 | None:intergenic | 30.0% | |
GATGCTCTATTAGATAAACT+TGG | + | chr8.4:29801065-29801084 | MS.gene012126:CDS | 30.0% | |
TCTGGTTAATGATGATACAA+TGG | + | chr8.4:29800935-29800954 | MS.gene012126:CDS | 30.0% | |
TTGAATCTGTTAAGAAATGG+AGG | + | chr8.4:29801459-29801478 | MS.gene012126:CDS | 30.0% | |
TTTGAGAAACTTCAGTCAAT+GGG | + | chr8.4:29801230-29801249 | MS.gene012126:CDS | 30.0% | |
! | AAGAATTCCAAATTTGGCTT+TGG | + | chr8.4:29801662-29801681 | MS.gene012126:CDS | 30.0% |
! | GATACTACTAATGATTTTGG+TGG | + | chr8.4:29801719-29801738 | MS.gene012126:CDS | 30.0% |
! | GCTGATACTACTAATGATTT+TGG | + | chr8.4:29801716-29801735 | MS.gene012126:CDS | 30.0% |
ATAAACTTGGAGACATAAGC+TGG | + | chr8.4:29801078-29801097 | MS.gene012126:CDS | 35.0% | |
ATTTCAGCATAATAGTCTGC+AGG | - | chr8.4:29801272-29801291 | None:intergenic | 35.0% | |
TCTTCTGATTCTGATTCAGA+TGG | - | chr8.4:29800999-29801018 | None:intergenic | 35.0% | |
TGCAGACTATTATGCTGAAA+TGG | + | chr8.4:29801271-29801290 | MS.gene012126:CDS | 35.0% | |
! | CATTGACTGAAGTTTCTCAA+AGG | - | chr8.4:29801231-29801250 | None:intergenic | 35.0% |
! | CTTTGAGAAACTTCAGTCAA+TGG | + | chr8.4:29801229-29801248 | MS.gene012126:CDS | 35.0% |
! | TTTGGTGGCTTCAGTAAAAA+GGG | + | chr8.4:29801734-29801753 | MS.gene012126:CDS | 35.0% |
!! | AATTCCAAATTTGGCTTTGG+AGG | + | chr8.4:29801665-29801684 | MS.gene012126:CDS | 35.0% |
!! | TTTTGGTGGCTTCAGTAAAA+AGG | + | chr8.4:29801733-29801752 | MS.gene012126:CDS | 35.0% |
!!! | GACTTTTCACTTTTTCCATG+TGG | - | chr8.4:29801310-29801329 | None:intergenic | 35.0% |
ATTAGCAGAGAAGCAGAAGA+TGG | + | chr8.4:29801334-29801353 | MS.gene012126:CDS | 40.0% | |
GAGGAAGTAAGAAGAGAAAG+AGG | + | chr8.4:29801765-29801784 | MS.gene012126:CDS | 40.0% | |
GGCCAAGAGATTATCTAAAG+AGG | + | chr8.4:29801388-29801407 | MS.gene012126:CDS | 40.0% | |
TGAAGCTGAGTATTTGAGTG+AGG | + | chr8.4:29800965-29800984 | MS.gene012126:CDS | 40.0% | |
TGTATCCATTCCACATTCTC+TGG | - | chr8.4:29801104-29801123 | None:intergenic | 40.0% | |
TTAAGAAATGGAGGAAGCAG+AGG | + | chr8.4:29801468-29801487 | MS.gene012126:CDS | 40.0% | |
! | AATGTCGTCCTTTTTCTGCT+TGG | - | chr8.4:29801441-29801460 | None:intergenic | 40.0% |
! | AGAGCTTGCATTTTACACTC+AGG | + | chr8.4:29801184-29801203 | MS.gene012126:CDS | 40.0% |
! | TGCATTTTACACTCAGGCAT+TGG | + | chr8.4:29801190-29801209 | MS.gene012126:CDS | 40.0% |
!! | TTCAGTAAAAAGGGTGCTGT+TGG | + | chr8.4:29801743-29801762 | MS.gene012126:CDS | 40.0% |
!!! | ATTTTACACTCAGGCATTGG+AGG | + | chr8.4:29801193-29801212 | MS.gene012126:CDS | 40.0% |
!!! | TTTTACACTCAGGCATTGGA+GGG | + | chr8.4:29801194-29801213 | MS.gene012126:CDS | 40.0% |
AGAAAGGGCCAAGCAGAAAA+AGG | + | chr8.4:29801430-29801449 | MS.gene012126:CDS | 45.0% | |
AGAGAAGCAGAAGATGGTAG+AGG | + | chr8.4:29801340-29801359 | MS.gene012126:CDS | 45.0% | |
AGAGGCTGAAGAGAGAAGAA+AGG | + | chr8.4:29801358-29801377 | MS.gene012126:CDS | 45.0% | |
AGTCTGCAGGCCTTAGAAAA+GGG | - | chr8.4:29801259-29801278 | None:intergenic | 45.0% | |
CATTGACATCGATCAAGAGC+AGG | + | chr8.4:29801133-29801152 | MS.gene012126:CDS | 45.0% | |
CGGTCAAAGAAGAAAAGACC+TGG | + | chr8.4:29801560-29801579 | MS.gene012126:CDS | 45.0% | |
CTGCTCTTGATCGATGTCAA+TGG | - | chr8.4:29801135-29801154 | None:intergenic | 45.0% | |
CTTGCCTCCAAAGCCAAATT+TGG | - | chr8.4:29801672-29801691 | None:intergenic | 45.0% | |
TAGTCTGCAGGCCTTAGAAA+AGG | - | chr8.4:29801260-29801279 | None:intergenic | 45.0% | |
TGAAGAGAGAAGAAAGGCCA+GGG | + | chr8.4:29801364-29801383 | MS.gene012126:CDS | 45.0% | |
TGGCTTCTTTCCCTTTCCAA+AGG | - | chr8.4:29801627-29801646 | None:intergenic | 45.0% | |
! | CAATGGGTCTCCCTTTTCTA+AGG | + | chr8.4:29801246-29801265 | MS.gene012126:CDS | 45.0% |
! | GCAAAGCAAGCCTTTGGAAA+GGG | + | chr8.4:29801614-29801633 | MS.gene012126:CDS | 45.0% |
!! | AGATAAGGCTTTGGACTTCG+AGG | + | chr8.4:29801520-29801539 | MS.gene012126:CDS | 45.0% |
!! | AGTAAAAAGGGTGCTGTTGG+AGG | + | chr8.4:29801746-29801765 | MS.gene012126:CDS | 45.0% |
!! | ATTTGGCTTTGGAGGCAAGA+AGG | + | chr8.4:29801673-29801692 | MS.gene012126:CDS | 45.0% |
!! | TTTGGCTTTGGAGGCAAGAA+GGG | + | chr8.4:29801674-29801693 | MS.gene012126:CDS | 45.0% |
AGATAATCTCTTGGCCTCCC+TGG | - | chr8.4:29801384-29801403 | None:intergenic | 50.0% | |
AGGAAGCAGAGGCAACAAAG+TGG | + | chr8.4:29801479-29801498 | MS.gene012126:CDS | 50.0% | |
CATAAGCTGGCCAGAGAATG+TGG | + | chr8.4:29801091-29801110 | MS.gene012126:CDS | 50.0% | |
CTGAAGAGAGAAGAAAGGCC+AGG | + | chr8.4:29801363-29801382 | MS.gene012126:CDS | 50.0% | |
GCTTTGCCTTACCTCCTGAT+CGG | - | chr8.4:29801601-29801620 | None:intergenic | 50.0% | |
GGAAGCAGAGGCAACAAAGT+GGG | + | chr8.4:29801480-29801499 | MS.gene012126:CDS | 50.0% | |
GGTAAGGCAAAGCAAGCCTT+TGG | + | chr8.4:29801608-29801627 | MS.gene012126:CDS | 50.0% | |
GGTGAAGACAGATAGCCACA+TGG | + | chr8.4:29801292-29801311 | MS.gene012126:CDS | 50.0% | |
TTTGGACTTCGAGGACGGAA+AGG | + | chr8.4:29801529-29801548 | MS.gene012126:CDS | 50.0% | |
! | AAAAGACCTGGAGTGTCTCC+GGG | + | chr8.4:29801572-29801591 | MS.gene012126:CDS | 50.0% |
! | GAAAAGACCTGGAGTGTCTC+CGG | + | chr8.4:29801571-29801590 | MS.gene012126:CDS | 50.0% |
! | GGCAAAGCAAGCCTTTGGAA+AGG | + | chr8.4:29801613-29801632 | MS.gene012126:CDS | 50.0% |
!! | AAGGCTTTGGACTTCGAGGA+CGG | + | chr8.4:29801524-29801543 | MS.gene012126:CDS | 50.0% |
!! | CAAAGTGGGTTTGCTGACGA+TGG | + | chr8.4:29801494-29801513 | MS.gene012126:CDS | 50.0% |
AGAGAGAAGAAAGGCCAGGG+AGG | + | chr8.4:29801367-29801386 | MS.gene012126:CDS | 55.0% | |
CGATGGCGCAGATAAGGCTT+TGG | + | chr8.4:29801511-29801530 | MS.gene012126:CDS | 55.0% | |
GCTGGCCAGAGAATGTGGAA+TGG | + | chr8.4:29801096-29801115 | MS.gene012126:CDS | 55.0% | |
TGCTGACGATGGCGCAGATA+AGG | + | chr8.4:29801505-29801524 | MS.gene012126:CDS | 55.0% | |
TTACCTCCTGATCGGTCACC+CGG | - | chr8.4:29801593-29801612 | None:intergenic | 55.0% | |
!! | AGGACGGAAAGGTGTTCGAG+CGG | + | chr8.4:29801540-29801559 | MS.gene012126:CDS | 55.0% |
!! | GGCATTGGAGGGTACTAGAC+AGG | + | chr8.4:29801205-29801224 | MS.gene012126:CDS | 55.0% |
GGGTGACCGATCAGGAGGTA+AGG | + | chr8.4:29801592-29801611 | MS.gene012126:CDS | 60.0% | |
GTGTCTCCGGGTGACCGATC+AGG | + | chr8.4:29801584-29801603 | MS.gene012126:CDS | 65.0% | |
TCTCCGGGTGACCGATCAGG+AGG | + | chr8.4:29801587-29801606 | MS.gene012126:CDS | 65.0% | |
CGGTCACCCGGAGACACTCC+AGG | - | chr8.4:29801581-29801600 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 29800924 | 29801790 | 29800924 | ID=MS.gene012126 |
chr8.4 | mRNA | 29800924 | 29801790 | 29800924 | ID=MS.gene012126.t1;Parent=MS.gene012126 |
chr8.4 | exon | 29800924 | 29801790 | 29800924 | ID=MS.gene012126.t1.exon1;Parent=MS.gene012126.t1 |
chr8.4 | CDS | 29800924 | 29801790 | 29800924 | ID=cds.MS.gene012126.t1;Parent=MS.gene012126.t1 |
Gene Sequence |
Protein sequence |