AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91244

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91244.t1 MTR_2g064460 83.673 294 34 1 1 280 114 407 3.07e-135 399
MS.gene91244.t1 MTR_2g064460 83.673 294 34 1 1 280 114 407 3.56e-135 399
MS.gene91244.t1 MTR_2g028790 61.688 154 56 2 349 500 3 155 1.87e-59 196
MS.gene91244.t1 MTR_4g083490 57.616 151 61 2 352 500 4 153 4.51e-54 182
MS.gene91244.t1 MTR_1g047720 45.794 214 79 6 355 532 5 217 7.46e-52 176
MS.gene91244.t1 MTR_2g436870 46.190 210 81 3 355 533 5 213 3.63e-49 169
MS.gene91244.t1 MTR_4g022570 54.110 146 64 2 355 498 5 149 2.08e-48 167
MS.gene91244.t1 MTR_7g058900 52.703 148 67 2 355 500 5 151 7.82e-47 163
MS.gene91244.t1 MTR_7g058640 51.351 148 65 3 355 498 5 149 1.08e-43 154
MS.gene91244.t1 MTR_7g058640 51.351 148 65 3 355 498 5 149 5.17e-43 152
MS.gene91244.t1 MTR_1g111890 45.238 168 70 3 355 501 5 171 2.27e-38 141
MS.gene91244.t1 MTR_1g047710 52.273 88 40 1 415 500 12 99 6.41e-23 95.1
MS.gene91244.t1 MTR_4g022470 53.488 86 38 1 415 498 10 95 1.05e-22 93.6
MS.gene91244.t1 MTR_7g058640 53.521 71 33 0 428 498 1 71 1.60e-19 85.5
MS.gene91244.t1 MTR_4g052550 30.872 149 99 3 354 500 1 147 3.85e-18 84.0
MS.gene91244.t1 MTR_5g089370 33.557 149 91 4 354 498 1 145 2.68e-17 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91244.t1 AT2G42650 46.970 264 129 4 2 258 113 372 3.27e-65 216
MS.gene91244.t1 AT3G58660 47.805 205 94 1 2 193 133 337 8.07e-60 204
MS.gene91244.t1 AT1G04750 62.162 148 53 2 355 500 5 151 1.68e-56 189
MS.gene91244.t1 AT2G33120 61.486 148 54 2 355 500 5 151 8.06e-56 187
MS.gene91244.t1 AT1G04760 58.108 148 59 2 355 500 5 151 2.06e-53 181
MS.gene91244.t1 AT1G04760 58.108 148 59 2 355 500 5 151 2.06e-53 181
MS.gene91244.t1 AT2G33120 58.333 156 54 3 355 500 5 159 4.07e-53 180
MS.gene91244.t1 AT2G32670 56.604 159 58 3 344 500 67 216 2.32e-52 180
MS.gene91244.t1 AT2G33110 55.556 153 65 2 355 505 5 156 3.73e-51 173
MS.gene91244.t1 AT2G33110 55.556 153 65 2 355 505 5 156 1.40e-50 173
MS.gene91244.t1 AT4G15780 55.034 149 65 2 355 501 5 153 5.62e-46 159
MS.gene91244.t1 AT1G06380 56.923 130 52 1 2 131 128 253 1.43e-44 158
MS.gene91244.t1 AT3G54300 45.509 167 69 3 355 500 5 170 8.78e-38 139
MS.gene91244.t1 AT3G54300 45.509 167 69 3 355 500 5 170 8.78e-38 139
MS.gene91244.t1 AT3G54300 45.509 167 69 3 355 500 5 170 8.78e-38 139
MS.gene91244.t1 AT1G04750 63.014 73 27 0 428 500 1 73 4.12e-23 95.9
MS.gene91244.t1 AT1G04750 63.014 73 27 0 428 500 1 73 4.12e-23 95.9
MS.gene91244.t1 AT1G04750 63.014 73 27 0 428 500 1 73 4.12e-23 95.9
MS.gene91244.t1 AT5G22360 30.968 155 102 4 354 505 1 153 1.08e-16 79.7
MS.gene91244.t1 AT4G32150 30.872 149 99 3 354 500 1 147 2.84e-16 78.6
MS.gene91244.t1 AT5G11150 33.333 150 91 5 354 498 1 146 2.51e-15 75.9
MS.gene91244.t1 AT5G11150 33.333 150 91 5 354 498 1 146 4.99e-15 75.1
MS.gene91244.t1 AT2G25340 31.544 149 94 4 354 498 1 145 1.29e-14 73.6

Find 112 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGCCAATGTTGCTTTAA+TGG 0.092114 2.3:+13894057 MS.gene91244:CDS
TACAGCCTTAGCAAGGAATT+TGG 0.174243 2.3:+13896305 MS.gene91244:CDS
CTCTTTCAGGCACAAGCTTT+TGG 0.207605 2.3:+13897550 MS.gene91244:intron
TGCATTGGTAATTGTGTTAA+TGG 0.245417 2.3:+13897609 MS.gene91244:CDS
GTCATACCTTTCACTATCTT+AGG 0.249101 2.3:+13896004 MS.gene91244:CDS
TCTTGCTTTGCCGGTTTATC+AGG 0.252561 2.3:+13892927 MS.gene91244:CDS
GTTGGAGTCTCTTGCTTTGC+CGG 0.274544 2.3:+13892918 MS.gene91244:CDS
TGGATTTGAAGAAGAAGAAT+TGG 0.309942 2.3:+13892704 MS.gene91244:CDS
GCCGGTTTATCAGGCTGTTC+CGG 0.333800 2.3:+13892936 MS.gene91244:CDS
GATTCATGAGATTAAGTATA+TGG 0.340892 2.3:+13893059 MS.gene91244:CDS
CCGTTGTTGCCGAAGTTATT+GGG 0.341945 2.3:+13892643 MS.gene91244:CDS
GCCGTTGTTGCCGAAGTTAT+TGG 0.345526 2.3:+13892642 MS.gene91244:CDS
ATCAGGCTGTTCCGGATGTT+AGG 0.369646 2.3:+13892944 MS.gene91244:CDS
TCATCATCGCCTCTCTCAAT+TGG 0.384191 2.3:-13894088 None:intergenic
ACCGACTTTATATCTGAATA+TGG 0.387130 2.3:+13896254 MS.gene91244:CDS
ACAGCCTTAGCAAGGAATTT+GGG 0.393048 2.3:+13896306 MS.gene91244:CDS
TTATAAGAAGAGGAAGATTC+CGG 0.399305 2.3:+13892675 MS.gene91244:CDS
GAAGGTGGCTAAGTTGAGTA+TGG 0.403885 2.3:+13892795 MS.gene91244:CDS
ACTGTACAGTTTAAAGTTGA+AGG 0.413933 2.3:+13896408 MS.gene91244:intron
TCCGGAACAGCCTGATAAAC+CGG 0.418750 2.3:-13892937 None:intergenic
TGTTGATGTTGGTGCTGGTC+AGG 0.420552 2.3:+13895453 MS.gene91244:CDS
TAAGGAATTGGAGGAGAAGT+TGG 0.449172 2.3:+13892984 MS.gene91244:CDS
GGATGTTAGGTTGAAGATTG+AGG 0.450663 2.3:+13892957 MS.gene91244:CDS
AGATTAAGTATATGGATGAT+AGG 0.454748 2.3:+13893067 MS.gene91244:CDS
GCCATTGTTGATGTTGGTGC+TGG 0.458409 2.3:+13895448 MS.gene91244:CDS
GGCGATAAGGCTGGTTGCAT+TGG 0.464702 2.3:+13897594 MS.gene91244:CDS
GTTGGTGAAGGATGAGAAGA+AGG 0.467743 2.3:+13893002 MS.gene91244:CDS
TTCTTCAAATCCACCTGCAC+CGG 0.471376 2.3:-13892694 None:intergenic
ATCGTCCATTTGAGGCGAAA+AGG 0.472064 2.3:+13892572 MS.gene91244:CDS
GAAGAGGAAGATTCCGGTGC+AGG 0.476004 2.3:+13892681 MS.gene91244:CDS
TCATACCTTTCACTATCTTA+GGG 0.476164 2.3:+13896005 MS.gene91244:CDS
GCAAGCTTGCTCATCTCATC+CGG 0.480425 2.3:-13896457 None:intergenic
GAAGTACTGTAGTGATCATC+CGG 0.483015 2.3:+13896438 MS.gene91244:CDS
GAGGAAGAAGAAAGATGGGT+TGG 0.485173 2.3:+13893266 MS.gene91244:CDS
GCTAAGAGGAAGAAGAAAGA+TGG 0.489873 2.3:+13893261 MS.gene91244:CDS
CGAAGAAGAGTAAGAAGAAA+GGG 0.491276 2.3:+13893034 MS.gene91244:CDS
GATGTTAGGTTGAAGATTGA+GGG 0.491728 2.3:+13892958 MS.gene91244:CDS
GGGAAACTGTGTTAATCCTC+TGG 0.496936 2.3:-13896207 None:intergenic
GCGAAGAAGAGTAAGAAGAA+AGG 0.499538 2.3:+13893033 MS.gene91244:CDS
TCCTACAGATTGGAATTCAA+TGG 0.502715 2.3:+13895837 MS.gene91244:CDS
TATCTTAGGGAGGATGGTTA+CGG 0.506283 2.3:+13896018 MS.gene91244:CDS
TTTCACTATCTTAGGGAGGA+TGG 0.507334 2.3:+13896012 MS.gene91244:CDS
GGTATCGATACATGGCGATA+AGG 0.508407 2.3:+13897581 MS.gene91244:CDS
CCCAATAACTTCGGCAACAA+CGG 0.509921 2.3:-13892643 None:intergenic
GACGGATTATCGTCCATTTG+AGG 0.511130 2.3:+13892564 MS.gene91244:CDS
GTGAACTTGTTGCTGTTTGA+AGG 0.518840 2.3:-13895964 None:intergenic
TGAGAATGTTGTTGCTGCGA+TGG 0.520350 2.3:+13892834 MS.gene91244:CDS
GATGAGCAAGCTTGCTAAGG+AGG 0.520982 2.3:+13896465 MS.gene91244:CDS
AATACCCAAATTCCTTGCTA+AGG 0.523408 2.3:-13896310 None:intergenic
GAAGTCCTCGGCGAAGGAAG+GGG 0.524847 2.3:+13893338 MS.gene91244:CDS
AGAAGTCCTCGGCGAAGGAA+GGG 0.525674 2.3:+13893337 MS.gene91244:CDS
GTTCTGATGGTGATGATCGC+AGG 0.526743 2.3:+13893094 MS.gene91244:CDS
CATCGAAGGGTTCTGCTAAG+AGG 0.527839 2.3:+13893247 MS.gene91244:CDS
GATGTGAATGCCGCAGAAGA+TGG 0.529935 2.3:+13893288 MS.gene91244:CDS
TACTCGCTCAAGAAAGGTCA+AGG 0.530808 2.3:-13896228 None:intergenic
GCTCATGCCATTGTTGATGT+TGG 0.531713 2.3:+13895442 MS.gene91244:CDS
GGTCTTTACTCGCTCAAGAA+AGG 0.534750 2.3:-13896234 None:intergenic
TCGATACATGGCGATAAGGC+TGG 0.539962 2.3:+13897585 MS.gene91244:CDS
GGCTGTGATCTATGCATTTG+TGG 0.540652 2.3:+13895858 MS.gene91244:CDS
TGGGACTTGTAGTGCGGTGA+AGG 0.540711 2.3:+13892777 MS.gene91244:CDS
TCTATCCATTAAAGCAACAT+TGG 0.542568 2.3:-13894062 None:intergenic
TGAAATTGAGAGTGGAGGAT+TGG 0.546452 2.3:+13893161 MS.gene91244:CDS
TTTGAAGAAGAAGAATTGGA+AGG 0.548475 2.3:+13892708 MS.gene91244:CDS
ATTGGTAATTGTGTTAATGG+TGG 0.550004 2.3:+13897612 MS.gene91244:CDS
TCAATCTTCAACCTAACATC+CGG 0.551342 2.3:-13892955 None:intergenic
AGAAGAGTAAGAAGAAAGGG+AGG 0.553817 2.3:+13893037 MS.gene91244:CDS
AAGAAGTCCTCGGCGAAGGA+AGG 0.555055 2.3:+13893336 MS.gene91244:CDS
ATTGGAGGAGAAGTTGGTGA+AGG 0.564046 2.3:+13892990 MS.gene91244:CDS
AACTGCTTCCCCAATAACTT+CGG 0.566955 2.3:-13892652 None:intergenic
CGTTGTTGCCGAAGTTATTG+GGG 0.570182 2.3:+13892644 MS.gene91244:CDS
GAGGAAGATTCCGGTGCAGG+TGG 0.571715 2.3:+13892684 MS.gene91244:CDS
GATGATGATGAAATTGAGAG+TGG 0.574135 2.3:+13893153 MS.gene91244:CDS
TGAGATGAGCAAGCTTGCTA+AGG 0.577083 2.3:+13896462 MS.gene91244:CDS
ATCCTCCCTAAGATAGTGAA+AGG 0.577414 2.3:-13896010 None:intergenic
CTAAGAGGAAGAAGAAAGAT+GGG 0.580491 2.3:+13893262 MS.gene91244:CDS
GGGAAGTGTGAAATCATCGA+AGG 0.582487 2.3:+13893233 MS.gene91244:CDS
GAATGTTGTTGCTGCGATGG+AGG 0.588380 2.3:+13892837 MS.gene91244:CDS
AAAAGAGGATTCTAGTGACA+AGG 0.589102 2.3:+13893212 MS.gene91244:CDS
AAAGACTTGGTATCGATACA+TGG 0.590434 2.3:+13897573 MS.gene91244:CDS
TTGGAAGGAGCAGATTGAGA+AGG 0.597099 2.3:+13892723 MS.gene91244:CDS
AATTGAGAGAGGCGATGATG+AGG 0.598358 2.3:+13894090 MS.gene91244:CDS
ATCTATGCATTTGTGGCAAG+AGG 0.599957 2.3:+13895865 MS.gene91244:CDS
GCTGAGTTCACAGATTTCAA+AGG 0.600243 2.3:+13895901 MS.gene91244:CDS
AATGTTGTTGCTGCGATGGA+GGG 0.600510 2.3:+13892838 MS.gene91244:CDS
ACCATATTCAGATATAAAGT+CGG 0.600585 2.3:-13896255 None:intergenic
TCCTCATTACAGCCTTAGCA+AGG 0.602135 2.3:+13896298 MS.gene91244:CDS
TTCACCACTTGCAAGTGTGA+TGG 0.603645 2.3:+13895982 MS.gene91244:CDS
ATCTGAATATGGTCATGAGA+AGG 0.603814 2.3:+13896265 MS.gene91244:CDS
GACTTGTAGTGCGGTGAAGG+TGG 0.604348 2.3:+13892780 MS.gene91244:CDS
AAGTCCTCGGCGAAGGAAGG+GGG 0.607674 2.3:+13893339 MS.gene91244:CDS
TTCTGATGGTGATGATCGCA+GGG 0.612296 2.3:+13893095 MS.gene91244:CDS
TACCTTTCACTATCTTAGGG+AGG 0.617238 2.3:+13896008 MS.gene91244:CDS
TGCGATGGAGGGTGTTGTCG+AGG 0.617796 2.3:+13892849 MS.gene91244:CDS
GCCATTGAATTCCAATCTGT+AGG 0.620514 2.3:-13895838 None:intergenic
CACAATCAAACCATCTTCTG+CGG 0.623901 2.3:-13893298 None:intergenic
TGTTAGGTTGAAGATTGAGG+GGG 0.626587 2.3:+13892960 MS.gene91244:CDS
ATGTTAGGTTGAAGATTGAG+GGG 0.627796 2.3:+13892959 MS.gene91244:CDS
TCTATGCATTTGTGGCAAGA+GGG 0.635548 2.3:+13895866 MS.gene91244:CDS
ACCAGCACCAACATCAACAA+TGG 0.636231 2.3:-13895449 None:intergenic
AAAGAGGATTCTAGTGACAA+GGG 0.638066 2.3:+13893213 MS.gene91244:CDS
TCCTTGCTAAGGCTGTAATG+AGG 0.638494 2.3:-13896299 None:intergenic
GGAAGTGTGAAATCATCGAA+GGG 0.639293 2.3:+13893234 MS.gene91244:CDS
GATGATAGGATGAGTTCTGA+TGG 0.644892 2.3:+13893081 MS.gene91244:CDS
GCATACTGTGTTGTTGCCAG+AGG 0.649789 2.3:+13896191 MS.gene91244:intron
GATAGACATCCAATTGAGAG+AGG 0.653428 2.3:+13894079 MS.gene91244:CDS
ACTCGCTCAAGAAAGGTCAA+GGG 0.657921 2.3:-13896227 None:intergenic
ATGACCATCACACTTGCAAG+TGG 0.659068 2.3:-13895986 None:intergenic
TCTTGATGACGACATTGATG+AGG 0.660632 2.3:+13893128 MS.gene91244:CDS
GGCAAGAGGGACAGATGTAG+TGG 0.677656 2.3:+13895879 MS.gene91244:CDS
GAGGACTGGGACTTGTAGTG+CGG 0.677894 2.3:+13892771 MS.gene91244:CDS
GATGATGAAATTGAGAGTGG+AGG 0.713918 2.3:+13893156 MS.gene91244:CDS
ACACAGACAGAAATCAAACA+CGG 0.724099 2.3:+13894029 MS.gene91244:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTAAGGTAATTAAAA+AGG - chr2.3:13897055-13897074 None:intergenic 10.0%
!!! AAATTTATTTTGTATTGTAT+TGG + chr2.3:13894812-13894831 MS.gene91244:intron 10.0%
!!! TATTTATTTTGTTTTGTTTT+CGG + chr2.3:13893631-13893650 MS.gene91244:intron 10.0%
!! AAAAAGAAAAAAAAGAAGAA+AGG - chr2.3:13896155-13896174 None:intergenic 15.0%
!! AAAAGTAAAACTATATAAGA+GGG + chr2.3:13895094-13895113 MS.gene91244:intron 15.0%
!! ACTTTCAAAATAAAGTTAAT+AGG + chr2.3:13896685-13896704 MS.gene91244:intron 15.0%
!! ATTATTTACTTGAATAAATG+AGG - chr2.3:13897295-13897314 None:intergenic 15.0%
!! TAGTTTAAGAATTAAATTGA+TGG - chr2.3:13897085-13897104 None:intergenic 15.0%
!!! AAATAAAGTTAATAGGTTTT+TGG + chr2.3:13896692-13896711 MS.gene91244:intron 15.0%
!!! AAATGTTTTTATCTAATTGA+AGG - chr2.3:13895363-13895382 None:intergenic 15.0%
!!! ATCAAATTACATAATTTGTA+GGG + chr2.3:13895157-13895176 MS.gene91244:intron 15.0%
!!! TATCAAATTACATAATTTGT+AGG + chr2.3:13895156-13895175 MS.gene91244:intron 15.0%
!! AAAAACATAGAAAATTCCAA+GGG - chr2.3:13896057-13896076 None:intergenic 20.0%
!! AATTTCTTCAATTGAATCTT+AGG + chr2.3:13895571-13895590 MS.gene91244:intron 20.0%
!! ATTTCTTCAATTGAATCTTA+GGG + chr2.3:13895572-13895591 MS.gene91244:intron 20.0%
!! CATGATAAAAAAAGTTGTAA+AGG + chr2.3:13896516-13896535 MS.gene91244:CDS 20.0%
!! CTAATGTTCAAAAGAATATT+AGG - chr2.3:13897209-13897228 None:intergenic 20.0%
!! GAAAAGTAAAACTATATAAG+AGG + chr2.3:13895093-13895112 MS.gene91244:intron 20.0%
!! GAAATGCAAAAAGTAATTAT+TGG + chr2.3:13893431-13893450 MS.gene91244:intron 20.0%
!! TAGTAATTTAAATATGCAGA+AGG - chr2.3:13894332-13894351 None:intergenic 20.0%
!! TATATACTCAAAATGAGAAT+AGG - chr2.3:13894725-13894744 None:intergenic 20.0%
!! TTTCTATATTTGCATAGTTT+AGG - chr2.3:13897128-13897147 None:intergenic 20.0%
!!! ATAATTACTTTTTGCATTTC+TGG - chr2.3:13893431-13893450 None:intergenic 20.0%
!!! ATTTTGAGTATATATTTTGG+TGG + chr2.3:13894731-13894750 MS.gene91244:intron 20.0%
!!! CATTTTATAATTACTGTTAG+TGG - chr2.3:13893937-13893956 None:intergenic 20.0%
!!! CTCATTTTGAGTATATATTT+TGG + chr2.3:13894728-13894747 MS.gene91244:intron 20.0%
!!! GTATTTTTTTTTTCTCTTTC+AGG + chr2.3:13897537-13897556 MS.gene91244:intron 20.0%
!!! TAATTCATTTTGATGCTATA+AGG + chr2.3:13894778-13894797 MS.gene91244:intron 20.0%
!!! TTATATAGTTTTACTTTTCC+AGG - chr2.3:13895092-13895111 None:intergenic 20.0%
!!! TTTAGAATGAATATGTTGAT+GGG + chr2.3:13894294-13894313 MS.gene91244:intron 20.0%
!!! TTTTCTATAAATTCCACAAA+TGG + chr2.3:13896573-13896592 MS.gene91244:intron 20.0%
! AATAGAAAAATCCTACAGAT+TGG + chr2.3:13895827-13895846 MS.gene91244:intron 25.0%
! AATGACTATGTTATTCATAC+TGG + chr2.3:13896907-13896926 MS.gene91244:intron 25.0%
! ACCATATTCAGATATAAAGT+CGG - chr2.3:13896258-13896277 None:intergenic 25.0%
! ACTAATTTGATCATTTGAGA+AGG + chr2.3:13897381-13897400 MS.gene91244:intron 25.0%
! AGAGAAAATGAAGCAAATAA+GGG - chr2.3:13894488-13894507 None:intergenic 25.0%
! AGAGAAGAAAAATGACATAA+CGG + chr2.3:13893365-13893384 MS.gene91244:CDS 25.0%
! AGATTAAGTATATGGATGAT+AGG + chr2.3:13893067-13893086 MS.gene91244:CDS 25.0%
! ATAAAATGGAAACACAAATG+AGG - chr2.3:13894458-13894477 None:intergenic 25.0%
! ATTTCACTTCACATAGTTAA+AGG - chr2.3:13897155-13897174 None:intergenic 25.0%
! CAAAAAGTAATTATTGGTCA+AGG + chr2.3:13893437-13893456 MS.gene91244:intron 25.0%
! CATGCATTATTAGAATTTGA+TGG + chr2.3:13897468-13897487 MS.gene91244:intron 25.0%
! CTCATAAGAGAAAGAAAATA+GGG - chr2.3:13894559-13894578 None:intergenic 25.0%
! GAAAAACATAGAAAATTCCA+AGG - chr2.3:13896058-13896077 None:intergenic 25.0%
! GATGAATAAAGGATATGAAT+TGG - chr2.3:13895771-13895790 None:intergenic 25.0%
! GATTCATGAGATTAAGTATA+TGG + chr2.3:13893059-13893078 MS.gene91244:CDS 25.0%
! TAAACCACATATGATACAAT+TGG - chr2.3:13894389-13894408 None:intergenic 25.0%
! TAAGGTAATTAAAAAGGAAC+CGG - chr2.3:13897049-13897068 None:intergenic 25.0%
! TCATAAGAGAAAGAAAATAG+GGG - chr2.3:13894558-13894577 None:intergenic 25.0%
! TCTTATAGAGAGATGAATAA+AGG - chr2.3:13895782-13895801 None:intergenic 25.0%
! TGTATCCTATAAAGAAACTA+TGG - chr2.3:13895602-13895621 None:intergenic 25.0%
! TGTTGTTAGAATTTATTGCT+TGG + chr2.3:13893562-13893581 MS.gene91244:intron 25.0%
! TTCTCAAATGATCAAATTAG+TGG - chr2.3:13897382-13897401 None:intergenic 25.0%
!! CTTTTATATTCTGTCAATGT+CGG + chr2.3:13893764-13893783 MS.gene91244:intron 25.0%
!! GTTTAGAATGAATATGTTGA+TGG + chr2.3:13894293-13894312 MS.gene91244:intron 25.0%
!! TCATATTTTGTATTGCACTT+AGG + chr2.3:13896782-13896801 MS.gene91244:intron 25.0%
!! TCTATGTTTTTCTTGTTAGT+TGG + chr2.3:13896066-13896085 MS.gene91244:intron 25.0%
!! TCTTTCTTTTTCTGATACTT+TGG - chr2.3:13894910-13894929 None:intergenic 25.0%
!! TGTAGCTTTTCTACTAAATT+TGG - chr2.3:13895204-13895223 None:intergenic 25.0%
!! TTGATAAAATAGTTGATGTG+TGG - chr2.3:13895142-13895161 None:intergenic 25.0%
!! TTTTGCATCTAGAAATTTAC+TGG + chr2.3:13895337-13895356 MS.gene91244:intron 25.0%
!!! AATGGATTAAACAATCGTAA+TGG - chr2.3:13894256-13894275 None:intergenic 25.0%
!!! ACAATTGATGATGATTTCAA+AGG - chr2.3:13894972-13894991 None:intergenic 25.0%
!!! TGGTCATTTTGACATTATTT+TGG + chr2.3:13894751-13894770 MS.gene91244:intron 25.0%
AAAAAGTTGTAAAGGTTGAG+TGG + chr2.3:13896524-13896543 MS.gene91244:intron 30.0%
AAAAGTTGTAAAGGTTGAGT+GGG + chr2.3:13896525-13896544 MS.gene91244:intron 30.0%
AAGTTACTGTAATCACAATC+TGG - chr2.3:13893873-13893892 None:intergenic 30.0%
AATCACACATTAACATTGCA+AGG + chr2.3:13896864-13896883 MS.gene91244:intron 30.0%
AATCTATGAACATGCATGAT+AGG - chr2.3:13894161-13894180 None:intergenic 30.0%
AATGAAGCAAATAAGGGAAA+AGG - chr2.3:13894482-13894501 None:intergenic 30.0%
AGAAGAAAAATGACATAACG+GGG + chr2.3:13893367-13893386 MS.gene91244:CDS 30.0%
ATAAGGGAAAAGGGATAAAA+TGG - chr2.3:13894472-13894491 None:intergenic 30.0%
ATGAAGCAAATAAGGGAAAA+GGG - chr2.3:13894481-13894500 None:intergenic 30.0%
CAAAAAGAAAAAGAAGTCCT+CGG + chr2.3:13893326-13893345 MS.gene91244:CDS 30.0%
CAAATAGCAAAGCAATATAG+TGG + chr2.3:13895740-13895759 MS.gene91244:intron 30.0%
CGAGAAGATAATTGAACATT+CGG + chr2.3:13896933-13896952 MS.gene91244:intron 30.0%
GAGAAGAAAAATGACATAAC+GGG + chr2.3:13893366-13893385 MS.gene91244:CDS 30.0%
GAGAGAAAATGAAGCAAATA+AGG - chr2.3:13894489-13894508 None:intergenic 30.0%
GATGGTTCACTCAATAATTA+AGG - chr2.3:13897067-13897086 None:intergenic 30.0%
GCTCATAAGAGAAAGAAAAT+AGG - chr2.3:13894560-13894579 None:intergenic 30.0%
GCTTGAAGTATACAAATGTA+CGG + chr2.3:13893798-13893817 MS.gene91244:intron 30.0%
GTAAAACTATATAAGAGGGA+AGG + chr2.3:13895098-13895117 MS.gene91244:intron 30.0%
TAAAAACATTTCATGTGTGC+AGG + chr2.3:13895372-13895391 MS.gene91244:intron 30.0%
TAATTATTGGTCAAGGATGA+GGG + chr2.3:13893444-13893463 MS.gene91244:intron 30.0%
TCACAAAATGACCTTCAAAA+GGG + chr2.3:13894860-13894879 MS.gene91244:intron 30.0%
TCATACCTTTCACTATCTTA+GGG + chr2.3:13896005-13896024 MS.gene91244:CDS 30.0%
TCTACTAAATTTGGACATGT+AGG - chr2.3:13895195-13895214 None:intergenic 30.0%
TCTATCCATTAAAGCAACAT+TGG - chr2.3:13894065-13894084 None:intergenic 30.0%
TCTCTTATGAGCTAAATTTG+TGG + chr2.3:13894568-13894587 MS.gene91244:intron 30.0%
TGGATTTGAAGAAGAAGAAT+TGG + chr2.3:13892704-13892723 MS.gene91244:CDS 30.0%
TTAGAATTTATTGCTTGACG+TGG + chr2.3:13893567-13893586 MS.gene91244:intron 30.0%
TTATAAGAAGAGGAAGATTC+CGG + chr2.3:13892675-13892694 MS.gene91244:CDS 30.0%
TTGCAATGTTAATGTGTGAT+TGG - chr2.3:13896865-13896884 None:intergenic 30.0%
TTGTCCAATTGTATCATATG+TGG + chr2.3:13894382-13894401 MS.gene91244:intron 30.0%
TTTACTTGAATAAATGAGGC+TGG - chr2.3:13897291-13897310 None:intergenic 30.0%
TTTGAAGAAGAAGAATTGGA+AGG + chr2.3:13892708-13892727 MS.gene91244:CDS 30.0%
! ACCGACTTTATATCTGAATA+TGG + chr2.3:13896254-13896273 MS.gene91244:CDS 30.0%
! ACTGTACAGTTTAAAGTTGA+AGG + chr2.3:13896408-13896427 MS.gene91244:intron 30.0%
! ATTGGTAATTGTGTTAATGG+TGG + chr2.3:13897612-13897631 MS.gene91244:CDS 30.0%
! CAATAGCTGAGATTTTTGAA+TGG - chr2.3:13894274-13894293 None:intergenic 30.0%
! CACATGCTACAACTTTTATT+TGG - chr2.3:13896719-13896738 None:intergenic 30.0%
! TGCATTGGTAATTGTGTTAA+TGG + chr2.3:13897609-13897628 MS.gene91244:CDS 30.0%
!! ACTCTAGTTAAGCTTTAGAA+TGG + chr2.3:13893684-13893703 MS.gene91244:intron 30.0%
!! ACTTTTTGCATTTCTGGATT+TGG - chr2.3:13893425-13893444 None:intergenic 30.0%
!! ATTGCTTTGCTATTTGAACT+CGG - chr2.3:13895736-13895755 None:intergenic 30.0%
!! GTAATGGACATAAAAAACAC+AGG - chr2.3:13894240-13894259 None:intergenic 30.0%
!! GTCTTTTCATGTTAAGTTGT+TGG + chr2.3:13892900-13892919 MS.gene91244:CDS 30.0%
!! TTCATTTTGATGCTATAAGG+AGG + chr2.3:13894781-13894800 MS.gene91244:intron 30.0%
!!! GCAATGGCAAATTTTGTTTT+CGG + chr2.3:13893596-13893615 MS.gene91244:intron 30.0%
!!! GTGAGTTTGTGTTGTTATTT+TGG + chr2.3:13896366-13896385 MS.gene91244:intron 30.0%
AAAAGAGGATTCTAGTGACA+AGG + chr2.3:13893212-13893231 MS.gene91244:CDS 35.0%
AAAGAGGATTCTAGTGACAA+GGG + chr2.3:13893213-13893232 MS.gene91244:CDS 35.0%
AATACCCAAATTCCTTGCTA+AGG - chr2.3:13896313-13896332 None:intergenic 35.0%
AATGGAAACACAAATGAGGT+AGG - chr2.3:13894454-13894473 None:intergenic 35.0%
ACACAGACAGAAATCAAACA+CGG + chr2.3:13894029-13894048 MS.gene91244:intron 35.0%
ACAGTAAGAAATCAAGCACA+AGG - chr2.3:13897354-13897373 None:intergenic 35.0%
ATCTGAATATGGTCATGAGA+AGG + chr2.3:13896265-13896284 MS.gene91244:CDS 35.0%
ATGGAAACACAAATGAGGTA+GGG - chr2.3:13894453-13894472 None:intergenic 35.0%
ATTAGGTGCGTCTTAATAAC+AGG - chr2.3:13897192-13897211 None:intergenic 35.0%
ATTGCTTGGACCAATACTTT+AGG + chr2.3:13895687-13895706 MS.gene91244:intron 35.0%
CAAGGGAAAGAAAAGTAAGA+AGG + chr2.3:13893503-13893522 MS.gene91244:intron 35.0%
CATTCTGCAACAATGCATAT+CGG - chr2.3:13897512-13897531 None:intergenic 35.0%
CGAAGAAGAGTAAGAAGAAA+GGG + chr2.3:13893034-13893053 MS.gene91244:CDS 35.0%
CTAAGAGGAAGAAGAAAGAT+GGG + chr2.3:13893262-13893281 MS.gene91244:CDS 35.0%
CTTAAACTATATCACCCACT+AGG + chr2.3:13897096-13897115 MS.gene91244:intron 35.0%
CTTTAAACTGTACAGTACAG+AGG - chr2.3:13896404-13896423 None:intergenic 35.0%
CTTTACAGTTTACATCTGCA+TGG + chr2.3:13897439-13897458 MS.gene91244:intron 35.0%
GAAGAAAGGAGTGAAAAAAG+AGG + chr2.3:13893197-13893216 MS.gene91244:CDS 35.0%
GACTTAAATGATCTTCAACC+TGG + chr2.3:13895071-13895090 MS.gene91244:intron 35.0%
GGTTATGTAGATTCAATGTC+CGG + chr2.3:13897027-13897046 MS.gene91244:intron 35.0%
GTAATTATTGGTCAAGGATG+AGG + chr2.3:13893443-13893462 MS.gene91244:intron 35.0%
GTCACAAAATGACCTTCAAA+AGG + chr2.3:13894859-13894878 MS.gene91244:intron 35.0%
GTCATACCTTTCACTATCTT+AGG + chr2.3:13896004-13896023 MS.gene91244:CDS 35.0%
GTCTGTTTGTATGCAATGAA+AGG + chr2.3:13896093-13896112 MS.gene91244:intron 35.0%
GTGAGTAAAAAGAGGAAGAA+AGG + chr2.3:13893183-13893202 MS.gene91244:CDS 35.0%
TAAGAGAAAGAAAATAGGGG+AGG - chr2.3:13894555-13894574 None:intergenic 35.0%
TCAATCTTCAACCTAACATC+CGG - chr2.3:13892958-13892977 None:intergenic 35.0%
TCCTACAGATTGGAATTCAA+TGG + chr2.3:13895837-13895856 MS.gene91244:CDS 35.0%
TCTTCAATTGAATCTTAGGG+CGG + chr2.3:13895575-13895594 MS.gene91244:intron 35.0%
TGCAAAAGAAAGTGAATCTG+TGG - chr2.3:13895324-13895343 None:intergenic 35.0%
TTACTGTTAGTGGTAGATTG+TGG - chr2.3:13893927-13893946 None:intergenic 35.0%
TTAGGTGCGTCTTAATAACA+GGG - chr2.3:13897191-13897210 None:intergenic 35.0%
TTAGTCAAGTTACAGAAGCA+GGG + chr2.3:13895509-13895528 MS.gene91244:intron 35.0%
! AGTTTAGGATCTATCCTAGT+GGG - chr2.3:13897113-13897132 None:intergenic 35.0%
! CTTCATTTTCTCTCAATCTC+GGG + chr2.3:13894495-13894514 MS.gene91244:intron 35.0%
! GATGATGATGAAATTGAGAG+TGG + chr2.3:13893153-13893172 MS.gene91244:CDS 35.0%
! GCTTCATTTTCTCTCAATCT+CGG + chr2.3:13894494-13894513 MS.gene91244:intron 35.0%
! TAGTTTAGGATCTATCCTAG+TGG - chr2.3:13897114-13897133 None:intergenic 35.0%
!! AAAGACTTGGTATCGATACA+TGG + chr2.3:13897573-13897592 MS.gene91244:CDS 35.0%
!! ATGTTAGGTTGAAGATTGAG+GGG + chr2.3:13892959-13892978 MS.gene91244:CDS 35.0%
!! GATGTTAGGTTGAAGATTGA+GGG + chr2.3:13892958-13892977 MS.gene91244:CDS 35.0%
!! GGAAGCAGTTTTATAAGAAG+AGG + chr2.3:13892665-13892684 MS.gene91244:CDS 35.0%
!! TCTTGCCAATGTTGCTTTAA+TGG + chr2.3:13894057-13894076 MS.gene91244:CDS 35.0%
!! TGTTTTGAACTAGAAGCAAC+TGG - chr2.3:13893973-13893992 None:intergenic 35.0%
!! TTGCTTTGCTATTTGAACTC+GGG - chr2.3:13895735-13895754 None:intergenic 35.0%
!!! CATTGTTGTTTTTGAGGACT+GGG + chr2.3:13892758-13892777 MS.gene91244:CDS 35.0%
!!! GCTCAGATTTTTGAGGTTAA+AGG + chr2.3:13896490-13896509 MS.gene91244:CDS 35.0%
!!! GTTCTGCATTGTTGTTTTTG+AGG + chr2.3:13892752-13892771 MS.gene91244:CDS 35.0%
AAATGGACACTTTCAGAGTG+GGG + chr2.3:13896590-13896609 MS.gene91244:intron 40.0%
AACTGCTTCCCCAATAACTT+CGG - chr2.3:13892655-13892674 None:intergenic 40.0%
AAGCAGAATGTTCAAACGTG+TGG - chr2.3:13894995-13895014 None:intergenic 40.0%
ACAAATGGACACTTTCAGAG+TGG + chr2.3:13896588-13896607 MS.gene91244:intron 40.0%
ACAGCCTTAGCAAGGAATTT+GGG + chr2.3:13896306-13896325 MS.gene91244:CDS 40.0%
ACCACCAGTTCAAAGCTTAA+TGG - chr2.3:13897010-13897029 None:intergenic 40.0%
AGAAGAGTAAGAAGAAAGGG+AGG + chr2.3:13893037-13893056 MS.gene91244:CDS 40.0%
ATCCTCCCTAAGATAGTGAA+AGG - chr2.3:13896013-13896032 None:intergenic 40.0%
ATCTATGCATTTGTGGCAAG+AGG + chr2.3:13895865-13895884 MS.gene91244:CDS 40.0%
ATTAATGCACTTCCTGGAGT+AGG - chr2.3:13895043-13895062 None:intergenic 40.0%
CAAATGGACACTTTCAGAGT+GGG + chr2.3:13896589-13896608 MS.gene91244:intron 40.0%
CACAATCAAACCATCTTCTG+CGG - chr2.3:13893301-13893320 None:intergenic 40.0%
CACTTGAGCTTACTTACACT+AGG + chr2.3:13896813-13896832 MS.gene91244:intron 40.0%
CTAAATTTGTGGCGATTCCA+TGG + chr2.3:13894579-13894598 MS.gene91244:intron 40.0%
CTTCAATTGAATCTTAGGGC+GGG + chr2.3:13895576-13895595 MS.gene91244:intron 40.0%
GATAGACATCCAATTGAGAG+AGG + chr2.3:13894079-13894098 MS.gene91244:CDS 40.0%
GATGATGAAATTGAGAGTGG+AGG + chr2.3:13893156-13893175 MS.gene91244:CDS 40.0%
GCCATTGAATTCCAATCTGT+AGG - chr2.3:13895841-13895860 None:intergenic 40.0%
GCGAAGAAGAGTAAGAAGAA+AGG + chr2.3:13893033-13893052 MS.gene91244:CDS 40.0%
GCTAAGAGGAAGAAGAAAGA+TGG + chr2.3:13893261-13893280 MS.gene91244:CDS 40.0%
GCTGAGTTCACAGATTTCAA+AGG + chr2.3:13895901-13895920 MS.gene91244:CDS 40.0%
GTTAGTCAAGTTACAGAAGC+AGG + chr2.3:13895508-13895527 MS.gene91244:intron 40.0%
TAAGGAATTGGAGGAGAAGT+TGG + chr2.3:13892984-13893003 MS.gene91244:CDS 40.0%
TACAGCCTTAGCAAGGAATT+TGG + chr2.3:13896305-13896324 MS.gene91244:CDS 40.0%
TACAGTTTACATCTGCATGG+TGG + chr2.3:13897442-13897461 MS.gene91244:intron 40.0%
TACCTTTCACTATCTTAGGG+AGG + chr2.3:13896008-13896027 MS.gene91244:CDS 40.0%
TATCTTAGGGAGGATGGTTA+CGG + chr2.3:13896018-13896037 MS.gene91244:CDS 40.0%
TCTATGCATTTGTGGCAAGA+GGG + chr2.3:13895866-13895885 MS.gene91244:CDS 40.0%
TGAAATTGAGAGTGGAGGAT+TGG + chr2.3:13893161-13893180 MS.gene91244:CDS 40.0%
TTAATGCACTTCCTGGAGTA+GGG - chr2.3:13895042-13895061 None:intergenic 40.0%
TTCGGACAAGAAGAGAAAGA+CGG + chr2.3:13893467-13893486 MS.gene91244:intron 40.0%
TTCTGTCTGTGTCAGCTTAT+AGG - chr2.3:13894021-13894040 None:intergenic 40.0%
TTGCGCTGTTAAGTTTAAGC+TGG + chr2.3:13896344-13896363 MS.gene91244:intron 40.0%
TTTCACTATCTTAGGGAGGA+TGG + chr2.3:13896012-13896031 MS.gene91244:CDS 40.0%
! AACTTCCTTTTCGCCTCAAA+TGG - chr2.3:13892580-13892599 None:intergenic 40.0%
! AATCTCGGGAATCCTTTTTC+GGG + chr2.3:13894509-13894528 MS.gene91244:intron 40.0%
! ACTCCAGGAAGTGCATTAAT+TGG + chr2.3:13895043-13895062 MS.gene91244:intron 40.0%
! AGGTTTTACCGAAGAAATGG+GGG + chr2.3:13892869-13892888 MS.gene91244:CDS 40.0%
! CAATCTCGGGAATCCTTTTT+CGG + chr2.3:13894508-13894527 MS.gene91244:intron 40.0%
! CGAGGTTTTACCGAAGAAAT+GGG + chr2.3:13892867-13892886 MS.gene91244:CDS 40.0%
! CTCCAGGAAGTGCATTAATT+GGG + chr2.3:13895044-13895063 MS.gene91244:intron 40.0%
! GAAAAATGACATAACGGGGT+TGG + chr2.3:13893371-13893390 MS.gene91244:CDS 40.0%
! GAACTCGGGTGATTTTACTT+TGG - chr2.3:13895721-13895740 None:intergenic 40.0%
! GAGGATTGGTGAGTAAAAAG+AGG + chr2.3:13893175-13893194 MS.gene91244:CDS 40.0%
! GAGGTTTTACCGAAGAAATG+GGG + chr2.3:13892868-13892887 MS.gene91244:CDS 40.0%
! GATGATAGGATGAGTTCTGA+TGG + chr2.3:13893081-13893100 MS.gene91244:CDS 40.0%
! GGAAGTGTGAAATCATCGAA+GGG + chr2.3:13893234-13893253 MS.gene91244:CDS 40.0%
! TCGAGGTTTTACCGAAGAAA+TGG + chr2.3:13892866-13892885 MS.gene91244:CDS 40.0%
! TGCTCACTCTAAGAAGAGAA+TGG + chr2.3:13894614-13894633 MS.gene91244:intron 40.0%
! TTTTCTACCCTTGTGTTGTG+CGG + chr2.3:13894422-13894441 MS.gene91244:intron 40.0%
!! ACCATTAAGCTTTGAACTGG+TGG + chr2.3:13897006-13897025 MS.gene91244:intron 40.0%
!! ACTCTGAAAGTGTCCATTTG+TGG - chr2.3:13896589-13896608 None:intergenic 40.0%
!! CACAAGCTTTTGGAAAGACT+TGG + chr2.3:13897560-13897579 MS.gene91244:CDS 40.0%
!! CACACCATTAAGCTTTGAAC+TGG + chr2.3:13897003-13897022 MS.gene91244:intron 40.0%
!! GAAGTACTGTAGTGATCATC+CGG + chr2.3:13896438-13896457 MS.gene91244:CDS 40.0%
!! GGATGTTAGGTTGAAGATTG+AGG + chr2.3:13892957-13892976 MS.gene91244:CDS 40.0%
!! GTGAACTTGTTGCTGTTTGA+AGG - chr2.3:13895967-13895986 None:intergenic 40.0%
!! TCTGAAGCTGGTATTTTGCA+TGG - chr2.3:13897252-13897271 None:intergenic 40.0%
!! TCTTGATGACGACATTGATG+AGG + chr2.3:13893128-13893147 MS.gene91244:CDS 40.0%
!! TGTTAGGTTGAAGATTGAGG+GGG + chr2.3:13892960-13892979 MS.gene91244:CDS 40.0%
!!! GCATTGTTGTTTTTGAGGAC+TGG + chr2.3:13892757-13892776 MS.gene91244:CDS 40.0%
AATGTTGTTGCTGCGATGGA+GGG + chr2.3:13892838-13892857 MS.gene91244:CDS 45.0%
AATTGAGAGAGGCGATGATG+AGG + chr2.3:13894090-13894109 MS.gene91244:CDS 45.0%
ACCAGCACCAACATCAACAA+TGG - chr2.3:13895452-13895471 None:intergenic 45.0%
ACTCGCTCAAGAAAGGTCAA+GGG - chr2.3:13896230-13896249 None:intergenic 45.0%
ATGACCATCACACTTGCAAG+TGG - chr2.3:13895989-13896008 None:intergenic 45.0%
ATTGGTCAAGGATGAGGGTT+CGG + chr2.3:13893449-13893468 MS.gene91244:intron 45.0%
ATTTCTCCACAGCCCGAAAA+AGG - chr2.3:13894524-13894543 None:intergenic 45.0%
CCAGCTTCAGATTTGCCATT+TGG + chr2.3:13897261-13897280 MS.gene91244:intron 45.0%
CCCAATAACTTCGGCAACAA+CGG - chr2.3:13892646-13892665 None:intergenic 45.0%
CCGTTGTTGCCGAAGTTATT+GGG + chr2.3:13892643-13892662 MS.gene91244:CDS 45.0%
CGTTGTTGCCGAAGTTATTG+GGG + chr2.3:13892644-13892663 MS.gene91244:CDS 45.0%
CTAACAACCCCCCATTTCTT+CGG - chr2.3:13892880-13892899 None:intergenic 45.0%
CTCCCAATTAATGCACTTCC+TGG - chr2.3:13895049-13895068 None:intergenic 45.0%
GAGGAAGAAGAAAGATGGGT+TGG + chr2.3:13893266-13893285 MS.gene91244:CDS 45.0%
GATTGAGGGGGTTAAGGAAT+TGG + chr2.3:13892972-13892991 MS.gene91244:CDS 45.0%
GCGGGCCATAGTTTCTTTAT+AGG + chr2.3:13895594-13895613 MS.gene91244:intron 45.0%
GCTCATGCCATTGTTGATGT+TGG + chr2.3:13895442-13895461 MS.gene91244:CDS 45.0%
GGACCAATACTTTAGGTACG+TGG + chr2.3:13895694-13895713 MS.gene91244:intron 45.0%
GGACCACGTACCTAAAGTAT+TGG - chr2.3:13895700-13895719 None:intergenic 45.0%
GGCTGTGATCTATGCATTTG+TGG + chr2.3:13895858-13895877 MS.gene91244:CDS 45.0%
GGGAAACTGTGTTAATCCTC+TGG - chr2.3:13896210-13896229 None:intergenic 45.0%
GGTCTTTACTCGCTCAAGAA+AGG - chr2.3:13896237-13896256 None:intergenic 45.0%
GTCAACAGCCAGAGATCATA+CGG - chr2.3:13893529-13893548 None:intergenic 45.0%
GTTGAAGATTGAGGGGGTTA+AGG + chr2.3:13892966-13892985 MS.gene91244:CDS 45.0%
TAAGAAGGCCGTATGATCTC+TGG + chr2.3:13893518-13893537 MS.gene91244:intron 45.0%
TACTCGCTCAAGAAAGGTCA+AGG - chr2.3:13896231-13896250 None:intergenic 45.0%
TCATCATCGCCTCTCTCAAT+TGG - chr2.3:13894091-13894110 None:intergenic 45.0%
TCCTCATTACAGCCTTAGCA+AGG + chr2.3:13896298-13896317 MS.gene91244:CDS 45.0%
TCCTTGCTAAGGCTGTAATG+AGG - chr2.3:13896302-13896321 None:intergenic 45.0%
TCTGCAACAATGCATATCGG+AGG - chr2.3:13897509-13897528 None:intergenic 45.0%
TGACCTTCAAAAGGGAGTCA+AGG + chr2.3:13894868-13894887 MS.gene91244:intron 45.0%
TGAGAATGTTGTTGCTGCGA+TGG + chr2.3:13892834-13892853 MS.gene91244:CDS 45.0%
TTACAGAAGCAGGGTCTTCT+TGG + chr2.3:13895518-13895537 MS.gene91244:intron 45.0%
TTCACCACTTGCAAGTGTGA+TGG + chr2.3:13895982-13896001 MS.gene91244:CDS 45.0%
TTCTTCAAATCCACCTGCAC+CGG - chr2.3:13892697-13892716 None:intergenic 45.0%
TTGGAAGGAGCAGATTGAGA+AGG + chr2.3:13892723-13892742 MS.gene91244:CDS 45.0%
! ATCGTCCATTTGAGGCGAAA+AGG + chr2.3:13892572-13892591 MS.gene91244:CDS 45.0%
! CCAAATGGCAAATCTGAAGC+TGG - chr2.3:13897264-13897283 None:intergenic 45.0%
! CGGTATGTACGTTTTTCCCT+TGG + chr2.3:13896038-13896057 MS.gene91244:intron 45.0%
! CTCTTTCAGGCACAAGCTTT+TGG + chr2.3:13897550-13897569 MS.gene91244:intron 45.0%
! GAAGGTGGCTAAGTTGAGTA+TGG + chr2.3:13892795-13892814 MS.gene91244:CDS 45.0%
! GGAGGAAGCTCAGATTTTTG+AGG + chr2.3:13896483-13896502 MS.gene91244:CDS 45.0%
! GGGAAGTGTGAAATCATCGA+AGG + chr2.3:13893233-13893252 MS.gene91244:CDS 45.0%
! GGTTTTACCGAAGAAATGGG+GGG + chr2.3:13892870-13892889 MS.gene91244:CDS 45.0%
! GTTCCTTGACTCCCTTTTGA+AGG - chr2.3:13894874-13894893 None:intergenic 45.0%
! GTTGGTGAAGGATGAGAAGA+AGG + chr2.3:13893002-13893021 MS.gene91244:CDS 45.0%
! TTCTGATGGTGATGATCGCA+GGG + chr2.3:13893095-13893114 MS.gene91244:CDS 45.0%
!! AATGAGGCTGGTTTGCCAAA+TGG - chr2.3:13897279-13897298 None:intergenic 45.0%
!! ATTGGAGGAGAAGTTGGTGA+AGG + chr2.3:13892990-13893009 MS.gene91244:CDS 45.0%
!! GACGGATTATCGTCCATTTG+AGG + chr2.3:13892564-13892583 MS.gene91244:CDS 45.0%
!! GGTATCGATACATGGCGATA+AGG + chr2.3:13897581-13897600 MS.gene91244:CDS 45.0%
!! TCTTGCTTTGCCGGTTTATC+AGG + chr2.3:13892927-13892946 MS.gene91244:CDS 45.0%
!! TGAGATGAGCAAGCTTGCTA+AGG + chr2.3:13896462-13896481 MS.gene91244:CDS 45.0%
ATCAGGCTGTTCCGGATGTT+AGG + chr2.3:13892944-13892963 MS.gene91244:CDS 50.0%
CATCGAAGGGTTCTGCTAAG+AGG + chr2.3:13893247-13893266 MS.gene91244:CDS 50.0%
CGAAGAAATGGGGGGTTGTT+AGG + chr2.3:13892878-13892897 MS.gene91244:CDS 50.0%
GAAAAAGAAGTCCTCGGCGA+AGG + chr2.3:13893332-13893351 MS.gene91244:CDS 50.0%
GAATGTTGTTGCTGCGATGG+AGG + chr2.3:13892837-13892856 MS.gene91244:CDS 50.0%
GATGTGAATGCCGCAGAAGA+TGG + chr2.3:13893288-13893307 MS.gene91244:CDS 50.0%
GCCATTGTTGATGTTGGTGC+TGG + chr2.3:13895448-13895467 MS.gene91244:CDS 50.0%
GCCGTTGTTGCCGAAGTTAT+TGG + chr2.3:13892642-13892661 MS.gene91244:CDS 50.0%
GGACAAGAAGAGAAAGACGG+CGG + chr2.3:13893470-13893489 MS.gene91244:intron 50.0%
GTGGCGATTCCATGGAGTTT+GGG + chr2.3:13894587-13894606 MS.gene91244:intron 50.0%
GTTGGAGTCTCTTGCTTTGC+CGG + chr2.3:13892918-13892937 MS.gene91244:CDS 50.0%
TCCGGAACAGCCTGATAAAC+CGG - chr2.3:13892940-13892959 None:intergenic 50.0%
TCGATACATGGCGATAAGGC+TGG + chr2.3:13897585-13897604 MS.gene91244:CDS 50.0%
TGAGGGGGTTAAGGAATTGG+AGG + chr2.3:13892975-13892994 MS.gene91244:CDS 50.0%
TGATCTCTGGCTGTTGACGT+TGG + chr2.3:13893531-13893550 MS.gene91244:intron 50.0%
TGGAGTAGGGCATGCTTTAC+AGG - chr2.3:13895029-13895048 None:intergenic 50.0%
TGGCGATTCCATGGAGTTTG+GGG + chr2.3:13894588-13894607 MS.gene91244:intron 50.0%
TGTAAAGCATGCCCTACTCC+AGG + chr2.3:13895028-13895047 MS.gene91244:intron 50.0%
TGTGGCGATTCCATGGAGTT+TGG + chr2.3:13894586-13894605 MS.gene91244:intron 50.0%
! GCAAGCTTGCTCATCTCATC+CGG - chr2.3:13896460-13896479 None:intergenic 50.0%
! GCATACTGTGTTGTTGCCAG+AGG + chr2.3:13896191-13896210 MS.gene91244:intron 50.0%
! GTTCTGATGGTGATGATCGC+AGG + chr2.3:13893094-13893113 MS.gene91244:CDS 50.0%
!! GATGAGCAAGCTTGCTAAGG+AGG + chr2.3:13896465-13896484 MS.gene91244:CDS 50.0%
!! TGTTGATGTTGGTGCTGGTC+AGG + chr2.3:13895453-13895472 MS.gene91244:CDS 50.0%
AAGAAGTCCTCGGCGAAGGA+AGG + chr2.3:13893336-13893355 MS.gene91244:CDS 55.0%
ACGGCGGATGTGAAGGTCAA+GGG + chr2.3:13893486-13893505 MS.gene91244:intron 55.0%
AGAAGTCCTCGGCGAAGGAA+GGG + chr2.3:13893337-13893356 MS.gene91244:CDS 55.0%
GAAGAGGAAGATTCCGGTGC+AGG + chr2.3:13892681-13892700 MS.gene91244:CDS 55.0%
GACTTGTAGTGCGGTGAAGG+TGG + chr2.3:13892780-13892799 MS.gene91244:CDS 55.0%
GAGAAAGACGGCGGATGTGA+AGG + chr2.3:13893479-13893498 MS.gene91244:intron 55.0%
GAGCATGACCCCAAACTCCA+TGG - chr2.3:13894599-13894618 None:intergenic 55.0%
GAGGACTGGGACTTGTAGTG+CGG + chr2.3:13892771-13892790 MS.gene91244:CDS 55.0%
GGACACTTTCAGAGTGGGGA+AGG + chr2.3:13896594-13896613 MS.gene91244:intron 55.0%
GGCAAGAGGGACAGATGTAG+TGG + chr2.3:13895879-13895898 MS.gene91244:CDS 55.0%
GGTGAAGCCGCACAACACAA+GGG - chr2.3:13894432-13894451 None:intergenic 55.0%
TGGGACTTGTAGTGCGGTGA+AGG + chr2.3:13892777-13892796 MS.gene91244:CDS 55.0%
! CTTGACGTGGCTCTGTGCAA+TGG + chr2.3:13893580-13893599 MS.gene91244:intron 55.0%
! GCCGGTTTATCAGGCTGTTC+CGG + chr2.3:13892936-13892955 MS.gene91244:CDS 55.0%
! GGCGATAAGGCTGGTTGCAT+TGG + chr2.3:13897594-13897613 MS.gene91244:CDS 55.0%
!!! GGGAATCCTTTTTCGGGCTG+TGG + chr2.3:13894515-13894534 MS.gene91244:intron 55.0%
AAGTCCTCGGCGAAGGAAGG+GGG + chr2.3:13893339-13893358 MS.gene91244:CDS 60.0%
GAAGTCCTCGGCGAAGGAAG+GGG + chr2.3:13893338-13893357 MS.gene91244:CDS 60.0%
GACGGCGGATGTGAAGGTCA+AGG + chr2.3:13893485-13893504 MS.gene91244:intron 60.0%
GAGGAAGATTCCGGTGCAGG+TGG + chr2.3:13892684-13892703 MS.gene91244:CDS 60.0%
GGGTGAAGCCGCACAACACA+AGG - chr2.3:13894433-13894452 None:intergenic 60.0%
!! TGCGATGGAGGGTGTTGTCG+AGG + chr2.3:13892849-13892868 MS.gene91244:CDS 60.0%
TGAACCCCCTTCCTTCGCCG+AGG - chr2.3:13893346-13893365 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 13892562 13897675 13892562 ID=MS.gene91244
chr2.3 mRNA 13892562 13897675 13892562 ID=MS.gene91244.t1;Parent=MS.gene91244
chr2.3 exon 13892562 13893442 13892562 ID=MS.gene91244.t1.exon1;Parent=MS.gene91244.t1
chr2.3 CDS 13892562 13893442 13892562 ID=cds.MS.gene91244.t1;Parent=MS.gene91244.t1
chr2.3 exon 13894039 13894111 13894039 ID=MS.gene91244.t1.exon2;Parent=MS.gene91244.t1
chr2.3 CDS 13894039 13894111 13894039 ID=cds.MS.gene91244.t1;Parent=MS.gene91244.t1
chr2.3 exon 13895394 13895474 13895394 ID=MS.gene91244.t1.exon3;Parent=MS.gene91244.t1
chr2.3 CDS 13895394 13895474 13895394 ID=cds.MS.gene91244.t1;Parent=MS.gene91244.t1
chr2.3 exon 13895832 13896039 13895832 ID=MS.gene91244.t1.exon4;Parent=MS.gene91244.t1
chr2.3 CDS 13895832 13896039 13895832 ID=cds.MS.gene91244.t1;Parent=MS.gene91244.t1
chr2.3 exon 13896192 13896327 13896192 ID=MS.gene91244.t1.exon5;Parent=MS.gene91244.t1
chr2.3 CDS 13896192 13896327 13896192 ID=cds.MS.gene91244.t1;Parent=MS.gene91244.t1
chr2.3 exon 13896417 13896537 13896417 ID=MS.gene91244.t1.exon6;Parent=MS.gene91244.t1
chr2.3 CDS 13896417 13896537 13896417 ID=cds.MS.gene91244.t1;Parent=MS.gene91244.t1
chr2.3 exon 13897559 13897675 13897559 ID=MS.gene91244.t1.exon7;Parent=MS.gene91244.t1
chr2.3 CDS 13897559 13897675 13897559 ID=cds.MS.gene91244.t1;Parent=MS.gene91244.t1
Gene Sequence

>MS.gene91244

ATGACGGATTATCGTCCATTTGAGGCGAAAAGGAAGTTGTGTAATTCTTATGATTTGTTTCTTGCTGATAAAGCTATTGTGCCGTTGTTGCCGAAGTTATTGGGGAAGCAGTTTTATAAGAAGAGGAAGATTCCGGTGCAGGTGGATTTGAAGAAGAAGAATTGGAAGGAGCAGATTGAGAAGGCTTGTTGTTCTGCATTGTTGTTTTTGAGGACTGGGACTTGTAGTGCGGTGAAGGTGGCTAAGTTGAGTATGGAGAGAGATGAGATTGTTGAGAATGTTGTTGCTGCGATGGAGGGTGTTGTCGAGGTTTTACCGAAGAAATGGGGGGTTGTTAGGTCTTTTCATGTTAAGTTGTTGGAGTCTCTTGCTTTGCCGGTTTATCAGGCTGTTCCGGATGTTAGGTTGAAGATTGAGGGGGTTAAGGAATTGGAGGAGAAGTTGGTGAAGGATGAGAAGAAGGTGAAAGACGCGAAGAAGAGTAAGAAGAAAGGGAGGATTCATGAGATTAAGTATATGGATGATAGGATGAGTTCTGATGGTGATGATCGCAGGGTTGATATTGATCTTGATGACGACATTGATGAGGTTGATGATGATGAAATTGAGAGTGGAGGATTGGTGAGTAAAAAGAGGAAGAAAGGAGTGAAAAAAGAGGATTCTAGTGACAAGGGAAGTGTGAAATCATCGAAGGGTTCTGCTAAGAGGAAGAAGAAAGATGGGTTGGATGTGAATGCCGCAGAAGATGGTTTGATTGTGAAGAGCAAAAAGAAAAAGAAGTCCTCGGCGAAGGAAGGGGGTTCAGAGAAGAAAAATGACATAACGGGGTTGGCTGTAAAATTTGCTCTTGAAGAAATGATCCAAATCCAGAAATGCAAAAAGTAATTATTGGTCAAGGATGAGGGTTCGGACAAGAAGAGAAAGACGGCGGATGTGAAGGTCAAGGGAAAGAAAAGTAAGAAGGCCGTATGATCTCTGGCTGTTGACGTTGGAGAGATTTTGTTGTTAGAATTTATTGCTTGACGTGGCTCTGTGCAATGGCAAATTTTGTTTTCGGAGAGTATTATCATATTTATTTTGTTTTGTTTTCGGTTACAACGATGTTTACTAATTCAAACGTGTACTCTAGTTAAGCTTTAGAATGGTTCTCTATTCGCAAAACTCAACATTGTTTCTCATTTCACAATGATATTAATTTTATTCTTTTATATTCTGTCAATGTCGGATATATAGATTGCTTGAAGTATACAAATGTACGGTTGTTTCTGTTTATATTTTTTGTTTTTGCTTTTAATTTTAAAACTGTCACCAGATTGTGATTACAGTAACTTAATTAGTATAACAGTGTCTGTGACTCTGTAACCACAATCTACCACTAACAGTAATTATAAAATGCAAATTGTTAAAGCCAGTTGCTTCTAGTTCAAAACATGAAATTGAAGATAATTCTTCTGAACCTATAAGCTGACACAGACAGAAATCAAACACGGAGCAATCTTGCCAATGTTGCTTTAATGGATAGACATCCAATTGAGAGAGGCGATGATGAGGTCAGAAAATCAAATCTATTTGAGTTACAATCAATTTTGTGTATAACCTATCATGCATGTTCATAGATTTTTTATCAGTTATCGTACATACTTTCTCTCGTCTATTGTTGTGTCGTTATCTTCTTCCTGTGTTTTTTATGTCCATTACGATTGTTTAATCCATTCAAAAATCTCAGCTATTGTTTAGAATGAATATGTTGATGGGATTATATATGATCCTTCTGCATATTTAAATTACTATATGTTGTAGAATTACAATTCAATATTGTTTTGTCCAATTGTATCATATGTGGTTTATAGTCTATCATTATTTTCTACCCTTGTGTTGTGCGGCTTCACCCTACCTCATTTGTGTTTCCATTTTATCCCTTTTCCCTTATTTGCTTCATTTTCTCTCAATCTCGGGAATCCTTTTTCGGGCTGTGGAGAAATTTGTATAACCTCCCCTATTTTCTTTCTCTTATGAGCTAAATTTGTGGCGATTCCATGGAGTTTGGGGTCATGCTCACTCTAAGAAGAGAATGGTACACAGTACACACTGTATGATTTAGAGAGAAGATGAAGAATTTGTTCTTTGTGTTGAATAAACTGTTTCTGATTTCTTACACAACCTATTCTCATTTTGAGTATATATTTTGGTGGTCATTTTGACATTATTTTGGAACTTAATTCATTTTGATGCTATAAGGAGGCTTATGTCAAATTTATTTTGTATTGTATTGGATGTATTAATACTAGATTTGAAAAGTCACAAAATGACCTTCAAAAGGGAGTCAAGGAACAGAAACTGAGCTTCCAAAGTATCAGAAAAAGAAAGAAAGAAATCATTAAAAAGAATAAGTCAATGAATAGTAAAACCTTTGAAATCATCATCAATTGTCCACACGTTTGAACATTCTGCTTCTTCAATTTTTCCTGTAAAGCATGCCCTACTCCAGGAAGTGCATTAATTGGGAGTTGACTTAAATGATCTTCAACCTGGAAAAGTAAAACTATATAAGAGGGAAGGCAAAAATATTGACACATTCCACACATCAACTATTTTATCAAATTACATAATTTGTAGGGACTTATTGTAGACCTACATGTCCAAATTTAGTAGAAAAGCTACAAATCACAAGCACAATATTTTCGTTAACTATCTGAAGAATTTGATATGTAAGTTGATTTATAAATATATTATTGTTATCTGAAAACATGCAGCAGAAACCACAGATTCACTTTCTTTTGCATCTAGAAATTTACTGGCCTTCAATTAGATAAAAACATTTCATGTGTGCAGGTAGAAACTCTTTCTGCTGTTGTAAGTACAGTTGCAAAGTGTGTGAGAGCTCATGCCATTGTTGATGTTGGTGCTGGTCAGGTTAGAGCTTCATTTTCTTTTGATTACTGTTCTGTTAGTCAAGTTACAGAAGCAGGGTCTTCTTGGCACGTTGAGTTGACATTAATGCATAGTTGAAATTTCTTCAATTGAATCTTAGGGCGGGCCATAGTTTCTTTATAGGATACATGAGAATAAACAAGTATTAGTCAAGACAAGATAATGCATGTCTGTTTATTTTGTTGTTAGAATTTATTGCTTGGACCAATACTTTAGGTACGTGGTCCAAAGTAAAATCACCCGAGTTCAAATAGCAAAGCAATATAGTGGTTCTTCCAATTCATATCCTTTATTCATCTCTCTATAAGAGCTTAGAGAGATACAATCAAATATCAATAGAAAAATCCTACAGATTGGAATTCAATGGCTGTGATCTATGCATTTGTGGCAAGAGGGACAGATGTAGTGGCTGAGTTCACAGATTTCAAAGGAAATTTCAAAAAAATTGCTCATAGCTGTCTTTTGAATCTTCCTTCAAACAGCAACAAGTTCACCACTTGCAAGTGTGATGGTCATACCTTTCACTATCTTAGGGAGGATGGTTACGGTATGTACGTTTTTCCCTTGGAATTTTCTATGTTTTTCTTGTTAGTTGGTTGTGTCTGTTTGTATGCAATGAAAGGTTGTGTCTGTTTTTTCTATGTTTTTCATTTAAATCTCCTTTCTTCTTTTTTTTCTTTTTTCTTTTTTCTTTTGCAGCATACTGTGTTGTTGCCAGAGGATTAACACAGTTTCCCTTGACCTTTCTTGAGCGAGTAAAGACCGACTTTATATCTGAATATGGTCATGAGAAGGCTTCTACAACTCCTCATTACAGCCTTAGCAAGGAATTTGGGTATTAACTTTATGTTTTGCGCTGTTAAGTTTAAGCTGGTGAGTTTGTGTTGTTATTTTGGCTTATGTATTAACCTCTGTACTGTACAGTTTAAAGTTGAAGGAACATATGAAGTACTGTAGTGATCATCCGGATGAGATGAGCAAGCTTGCTAAGGAGGAAGCTCAGATTTTTGAGGTTAAAGGCGTCATGATAAAAAAAGTTGTAAAGGTTGAGTGGGTCTTCTTTATTGTTCTGTTTAACGATTTTCTATAAATTCCACAAATGGACACTTTCAGAGTGGGGAAGGAGAAAATGTTTTGATTAACGAGTGAAACAAGAAAAAGTGATTTTAATAAAATTAAATTATATATCAATACTTTCAAAATAAAGTTAATAGGTTTTTGGTCCAAATAAAAGTTGTAGCATGTGTTCTCGTGAGTTTAGCTTAGTTAATCACATAAGCTACTTCACTTCATATTTTGTATTGCACTTAGGTACTGTCACACTTGAGCTTACTTACACTAGGAACTAGTTTACACACGCACTCTCAAACCAATCACACATTAACATTGCAAGGAATTTATTTTTATGATATAAAATGACTATGTTATTCATACTGGTTTCGAGAAGATAATTGAACATTCGGCATTCTGTCACATGATTGTGTGTGTAATGTGTGTGTAGACACACACACACACCATTAAGCTTTGAACTGGTGGTTATGTAGATTCAATGTCCGGTTCCTTTTTAATTACCTTAATTATTGAGTGAACCATCAATTTAATTCTTAAACTATATCACCCACTAGGATAGATCCTAAACTATGCAAATATAGAAACAGTCCTTTAACTATGTGAAGTGAAATTCATGAATTTAGTCCCTGTTATTAAGACGCACCTAATATTCTTTTGAACATTAGACATACTTCTATATAAGAAACCATGCAAAATACCAGCTTCAGATTTGCCATTTGGCAAACCAGCCTCATTTATTCAAGTAAATAATATGAAATGATTAAATTAGCTCATATATTAATACTCTCCTTGTGCTTGATTTCTTACTGTGTATACCACTAATTTGATCATTTGAGAAGGACAGCGAATTGTTTTATAACGCTACGTCGAATTTTCTTTACAGTTTACATCTGCATGGTGGTTACATGCATTATTAGAATTTGATGGCATACTGCTGAGTTTCCTCCGATATGCATTGTTGCAGAATGATTTTGTATTTTTTTTTTCTCTTTCAGGCACAAGCTTTTGGAAAGACTTGGTATCGATACATGGCGATAAGGCTGGTTGCATTGGTAATTGTGTTAATGGTGGTTGTCATATGCAGTTTGTTCATTTTGTTCATCGTTAAATAA
Protein sequence

>MS.gene91244.t1

MTDYRPFEAKRKLCNSYDLFLADKAIVPLLPKLLGKQFYKKRKIPVQVDLKKKNWKEQIEKACCSALLFLRTGTCSAVKVAKLSMERDEIVENVVAAMEGVVEVLPKKWGVVRSFHVKLLESLALPVYQAVPDVRLKIEGVKELEEKLVKDEKKVKDAKKSKKKGRIHEIKYMDDRMSSDGDDRRVDIDLDDDIDEVDDDEIESGGLVSKKRKKGVKKEDSSDKGSVKSSKGSAKRKKKDGLDVNAAEDGLIVKSKKKKKSSAKEGGSEKKNDITGLAVKFALEEMIQIQKCKKNQTRSNLANVALMDRHPIERGDDEVETLSAVVSTVAKCVRAHAIVDVGAGQKNPTDWNSMAVIYAFVARGTDVVAEFTDFKGNFKKIAHSCLLNLPSNSNKFTTCKCDGHTFHYLREDGYAYCVVARGLTQFPLTFLERVKTDFISEYGHEKASTTPHYSLSKEFGLKLKEHMKYCSDHPDEMSKLAKEEAQIFEVKGVMIKKVVKAQAFGKTWYRYMAIRLVALVIVLMVVVICSLFILFIVK