AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94183


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94183.t1 MTR_5g083780 98.634 366 5 0 1 366 1 366 0.0 726
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94183.t1 AT2G40430 54.217 249 105 5 1 248 1 241 2.33e-70 227
MS.gene94183.t1 AT2G40430 53.704 162 74 1 199 360 275 435 9.76e-41 149
MS.gene94183.t1 AT2G40430 54.217 249 105 5 1 248 1 241 3.84e-70 226
MS.gene94183.t1 AT2G40430 53.704 162 74 1 199 360 275 435 1.07e-40 149
MS.gene94183.t1 AT2G40430 53.704 162 74 1 199 360 126 286 5.23e-42 149
MS.gene94183.t1 AT2G40430 73.563 87 23 0 1 87 1 87 6.89e-35 130

Find 65 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACAAAGGATGCTCTTTC+TGG 0.211360 5.4:-66323551 MS.gene94183:CDS
ACAGTTAAAGGCACCGGTTC+AGG 0.249592 5.4:+66321568 None:intergenic
AACCTATTCCTCCTGGGTTT+TGG 0.258900 5.4:+66320103 None:intergenic
TTCATTGGCGACTAAACTTT+TGG 0.280238 5.4:+66322277 None:intergenic
TAAAGTCTACAGAAATGAAT+TGG 0.292665 5.4:-66321593 MS.gene94183:CDS
TCTCCAGCAGGAACAGTTAA+AGG 0.308159 5.4:+66321556 None:intergenic
TTATTAAGCGAAGAGATAAA+TGG 0.314835 5.4:-66320324 MS.gene94183:CDS
AAGTGTCTACCTTAAGCTTT+CGG 0.364930 5.4:+66320295 None:intergenic
AGGCAACAAGAAAGTGAAAA+AGG 0.370426 5.4:-66321942 MS.gene94183:intron
TTTGATATGTGGGGTGATAA+AGG 0.381349 5.4:-66322052 MS.gene94183:intron
TCGCTTAATAAAACTTGAAC+AGG 0.391740 5.4:+66320336 None:intergenic
TGCTAAACAAGAGAGGTTAA+AGG 0.397687 5.4:-66320540 MS.gene94183:CDS
TTGAGTTGAATAAGAGAATT+CGG 0.399925 5.4:-66320791 MS.gene94183:CDS
TGGATCCATCCGAAAGCTTA+AGG 0.404582 5.4:-66320304 MS.gene94183:intron
TTCCAAAACCCAGGAGGAAT+AGG 0.410228 5.4:-66320105 MS.gene94183:intron
AAATGAATTGGGCCCTGAAC+CGG 0.418925 5.4:-66321581 MS.gene94183:CDS
ATTCTGACGTATTTGATATG+TGG 0.431247 5.4:-66322063 MS.gene94183:CDS
AAGGCACTGGCTTAACAAAC+TGG 0.432795 5.4:+66322342 None:intergenic
GGGTTGTTGCACACTTCTAA+AGG 0.437307 5.4:-66320164 MS.gene94183:CDS
CGCCAATGAAAATATTCATA+AGG 0.466327 5.4:-66322264 MS.gene94183:intron
GGAGGATCAACCTCGACAGC+TGG 0.470903 5.4:+66321786 None:intergenic
AAAGTCTACAGAAATGAATT+GGG 0.481927 5.4:-66321592 MS.gene94183:CDS
TCAGAAATAGCTTCTCCAGC+AGG 0.486553 5.4:+66321544 None:intergenic
AAGGCATGTCCTCCTCGCTT+AGG 0.491146 5.4:-66320521 MS.gene94183:CDS
TTAAACTAACCTATTCCTCC+TGG 0.497216 5.4:+66320096 None:intergenic
GTCTACCTTAAGCTTTCGGA+TGG 0.500501 5.4:+66320299 None:intergenic
CAGTTAAAGGCACCGGTTCA+GGG 0.505603 5.4:+66321569 None:intergenic
GTGCCTTTAACTGTTCCTGC+TGG 0.514168 5.4:-66321559 MS.gene94183:CDS
AATAAAACTTGAACAGGAGC+AGG 0.514471 5.4:+66320342 None:intergenic
TTCTGACGTATTTGATATGT+GGG 0.515220 5.4:-66322062 MS.gene94183:CDS
AATCGAAGAGTTCAAGGAAA+GGG 0.519607 5.4:-66323631 MS.gene94183:CDS
ACCTGATGACTTTCATGCGT+GGG 0.529893 5.4:+66321747 None:intergenic
TAAACTAACCTATTCCTCCT+GGG 0.538566 5.4:+66320097 None:intergenic
TGTCATGCAGACGCAGATGA+AGG 0.540396 5.4:-66321962 MS.gene94183:intron
TCCCACGCATGAAAGTCATC+AGG 0.540481 5.4:-66321748 MS.gene94183:intron
TGTTTCTTTAGAGTAGATGA+AGG 0.544003 5.4:+66322323 None:intergenic
TACTTGTGCTTTCCTAAGCG+AGG 0.545713 5.4:+66320509 None:intergenic
TTTAGAGTAGATGAAGGCAC+TGG 0.552068 5.4:+66322329 None:intergenic
TACATTAGCTACTGCTGTTG+CGG 0.553793 5.4:-66321626 MS.gene94183:CDS
GTATAAAAGCATAGAGAAGA+GGG 0.558222 5.4:-66320137 MS.gene94183:CDS
GCTGTCGAGGTTGATCCTCC+AGG 0.559631 5.4:-66321783 MS.gene94183:CDS
GGAAATTAATCATGAAGATG+AGG 0.560652 5.4:-66320594 MS.gene94183:CDS
CAAGGAAAGGGAAGAAAGCA+TGG 0.567630 5.4:-66323619 MS.gene94183:CDS
TTTCTTTGAGAAATCAACAA+AGG 0.573982 5.4:-66323564 MS.gene94183:CDS
GGTTGGTTGTTCCAAAACCC+AGG 0.577115 5.4:-66320114 MS.gene94183:CDS
TACTCATATTCCAGCTGTCG+AGG 0.579607 5.4:-66321796 MS.gene94183:CDS
ACAAAGGATGCTCTTTCTGG+TGG 0.582056 5.4:-66323548 MS.gene94183:CDS
TTTGATGTGGCTAGATCTTG+CGG 0.583564 5.4:-66322429 MS.gene94183:intron
GCAGGAACAGTTAAAGGCAC+CGG 0.584872 5.4:+66321562 None:intergenic
GTTGCACACTTCTAAAGGAT+CGG 0.588324 5.4:-66320159 MS.gene94183:CDS
GGTATAAAAGCATAGAGAAG+AGG 0.597174 5.4:-66320138 MS.gene94183:CDS
GAAAGTAATCACGAAGATGA+TGG 0.598830 5.4:-66321334 MS.gene94183:CDS
TCGACAGCTGGAATATGAGT+AGG 0.600011 5.4:+66321798 None:intergenic
AAATCGAAGAGTTCAAGGAA+AGG 0.605097 5.4:-66323632 MS.gene94183:CDS
TATAAAAGCATAGAGAAGAG+GGG 0.615122 5.4:-66320136 MS.gene94183:CDS
TACCTGATGACTTTCATGCG+TGG 0.622306 5.4:+66321746 None:intergenic
ATTGATGTTTAAGAGGTCAG+TGG 0.627154 5.4:-66319862 MS.gene94183:intron
GTGGGATTAAATGAGCATCC+TGG 0.648369 5.4:+66321765 None:intergenic
TTGTGCTTTCCTAAGCGAGG+AGG 0.655472 5.4:+66320512 None:intergenic
ATAAAAGCATAGAGAAGAGG+GGG 0.668542 5.4:-66320135 MS.gene94183:CDS
GACAAGTTGCTAAACAAGAG+AGG 0.673783 5.4:-66320547 MS.gene94183:CDS
GGATTAAATGAGCATCCTGG+AGG 0.690842 5.4:+66321768 None:intergenic
TGGTTGTTCCAAAACCCAGG+AGG 0.713845 5.4:-66320111 MS.gene94183:CDS
AAATACGTCAGAATCTAACA+CGG 0.731068 5.4:+66322072 None:intergenic
TCTGACGTATTTGATATGTG+GGG 0.759234 5.4:-66322061 MS.gene94183:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTAATATTAATT+TGG - chr5.4:66323610-66323629 MS.gene94183:CDS 0.0%
!! CCAAAATAAATAAATAAAAA+TGG + chr5.4:66320039-66320058 None:intergenic 10.0%
!!! AATAAAACAAATTTTAAAAG+AGG + chr5.4:66321373-66321392 None:intergenic 10.0%
!!! AATTTATTTTAAATTTGATG+TGG - chr5.4:66321058-66321077 MS.gene94183:intron 10.0%
!!! CCATTTTTATTTATTTATTT+TGG - chr5.4:66320036-66320055 MS.gene94183:intron 10.0%
!!! GTGTATAAATTTTTATTTTA+TGG - chr5.4:66322405-66322424 MS.gene94183:CDS 10.0%
!!! TATTTTATTTTTTCAAAACA+AGG - chr5.4:66320574-66320593 MS.gene94183:CDS 10.0%
!! TTAAAATAAATTCAAATCCA+AGG + chr5.4:66321050-66321069 None:intergenic 15.0%
!! TTACTTACAAATATATTAAG+TGG + chr5.4:66322575-66322594 None:intergenic 15.0%
!!! GTTAAAATTCATTTTCTTTT+AGG - chr5.4:66320614-66320633 MS.gene94183:CDS 15.0%
!!! TTATTTTGTTTAGAGAAAAA+TGG - chr5.4:66323478-66323497 MS.gene94183:intron 15.0%
!! AAATATGGAAACAAATTCAT+AGG + chr5.4:66322032-66322051 None:intergenic 20.0%
!! CTAAATAATAATATGCTTAG+TGG - chr5.4:66321286-66321305 MS.gene94183:intron 20.0%
!! CTTCTTTAATAATCTATATC+AGG - chr5.4:66321399-66321418 MS.gene94183:intron 20.0%
!! GAAAACACATCAATTATAAT+AGG + chr5.4:66320866-66320885 None:intergenic 20.0%
!! TTTAATAATCTATATCAGGA+GGG - chr5.4:66321403-66321422 MS.gene94183:intron 20.0%
!!! AAATTAGTCTAAAAAAAAGC+AGG + chr5.4:66323289-66323308 None:intergenic 20.0%
!!! AATTAGTCTAAAAAAAAGCA+GGG + chr5.4:66323288-66323307 None:intergenic 20.0%
!!! CATAAGTTGTTTTAGTTTTA+GGG - chr5.4:66320395-66320414 MS.gene94183:intron 20.0%
!!! GTAACACAATCTTTTTTTTT+AGG - chr5.4:66320661-66320680 MS.gene94183:intron 20.0%
!!! TCATAAGTTGTTTTAGTTTT+AGG - chr5.4:66320394-66320413 MS.gene94183:intron 20.0%
!!! TTAAATACTTTCTTTTTTGC+CGG - chr5.4:66322254-66322273 MS.gene94183:intron 20.0%
!!! TTTATTTTTTCAAAACAAGG+AGG - chr5.4:66320577-66320596 MS.gene94183:CDS 20.0%
!!! TTTTCTCAAAAGAAATTGAT+AGG - chr5.4:66322778-66322797 MS.gene94183:intron 20.0%
! AAACGTAATTGTTGTAGAAA+TGG + chr5.4:66323101-66323120 None:intergenic 25.0%
! AAAGTCTACAGAAATGAATT+GGG - chr5.4:66321908-66321927 MS.gene94183:intron 25.0%
! AAGAACTTTATTGTTTAACC+AGG - chr5.4:66321850-66321869 MS.gene94183:intron 25.0%
! ACATAAACTTGTACGAAAAA+TGG - chr5.4:66320894-66320913 MS.gene94183:intron 25.0%
! AGCTTATGAAAACAACTTAT+AGG - chr5.4:66320731-66320750 MS.gene94183:CDS 25.0%
! ATCAATGAAAAAGTGAATTC+TGG + chr5.4:66321027-66321046 None:intergenic 25.0%
! ATTAAGCTGTTTATTCAAAC+AGG - chr5.4:66320807-66320826 MS.gene94183:CDS 25.0%
! ATTATATGCTTGCAATTAGT+TGG - chr5.4:66323512-66323531 MS.gene94183:CDS 25.0%
! CTCTATAAAGAAAAGCTATT+AGG - chr5.4:66320532-66320551 MS.gene94183:CDS 25.0%
! CTTTAATAATCTATATCAGG+AGG - chr5.4:66321402-66321421 MS.gene94183:intron 25.0%
! GTACAAGTTTATGTAATTCA+TGG + chr5.4:66320888-66320907 None:intergenic 25.0%
! TAAAGTCTACAGAAATGAAT+TGG - chr5.4:66321907-66321926 MS.gene94183:intron 25.0%
! TATGTTGGTGTACATAATTA+GGG - chr5.4:66323316-66323335 MS.gene94183:intron 25.0%
! TGCTTTCAAAAAAAGAATAC+CGG + chr5.4:66322442-66322461 None:intergenic 25.0%
! TTAAGCTGTTTATTCAAACA+GGG - chr5.4:66320808-66320827 MS.gene94183:CDS 25.0%
! TTATATGCTTGCAATTAGTT+GGG - chr5.4:66323513-66323532 MS.gene94183:CDS 25.0%
! TTATGTTGGTGTACATAATT+AGG - chr5.4:66323315-66323334 MS.gene94183:intron 25.0%
! TTATTAAGCGAAGAGATAAA+TGG - chr5.4:66323176-66323195 MS.gene94183:intron 25.0%
!! CTTAATTTCATTTTGAACAC+TGG - chr5.4:66322540-66322559 MS.gene94183:intron 25.0%
!! GACCTTATGAATATTTTCAT+TGG + chr5.4:66321241-66321260 None:intergenic 25.0%
!! TTTCTTTGAGAAATCAACAA+AGG - chr5.4:66319936-66319955 MS.gene94183:intron 25.0%
!!! AAAGCATTTAGTATCCATTT+TGG - chr5.4:66321481-66321500 MS.gene94183:intron 25.0%
!!! AGTCACTTTCTTTGTTTTAA+TGG + chr5.4:66322685-66322704 None:intergenic 25.0%
!!! CATTTTTGAAGTGTTTGTTT+TGG - chr5.4:66320483-66320502 MS.gene94183:intron 25.0%
!!! GTCACTTTCTTTGTTTTAAT+GGG + chr5.4:66322684-66322703 None:intergenic 25.0%
!!! TAGTATCCATTTTGGTTAAT+GGG - chr5.4:66321489-66321508 MS.gene94183:intron 25.0%
!!! TCTTTTATTTTAGTAGAGAG+AGG + chr5.4:66322833-66322852 None:intergenic 25.0%
!!! TGTTATTTTTATGACCTGAT+TGG + chr5.4:66322289-66322308 None:intergenic 25.0%
!!! TTAGTATCCATTTTGGTTAA+TGG - chr5.4:66321488-66321507 MS.gene94183:intron 25.0%
!!! TTGAGTTGAATAAGAGAATT+CGG - chr5.4:66322709-66322728 MS.gene94183:intron 25.0%
!!! TTTTTCGAAGACAAATCAAA+AGG - chr5.4:66320006-66320025 MS.gene94183:intron 25.0%
AAATACGTCAGAATCTAACA+CGG + chr5.4:66321431-66321450 None:intergenic 30.0%
AACTAATGGGAATAAGATCA+AGG + chr5.4:66320702-66320721 None:intergenic 30.0%
AAGCTATCTTAGAGAACTAA+TGG + chr5.4:66320716-66320735 None:intergenic 30.0%
AATGTGCAGCAACAATAAAA+TGG + chr5.4:66321626-66321645 None:intergenic 30.0%
ACCAATTCCATTATTGTAAC+AGG - chr5.4:66323129-66323148 MS.gene94183:intron 30.0%
ACTAATGGGAATAAGATCAA+GGG + chr5.4:66320701-66320720 None:intergenic 30.0%
AGCTATCTTAGAGAACTAAT+GGG + chr5.4:66320715-66320734 None:intergenic 30.0%
ATCAGATGTTTAGACATTAC+TGG + chr5.4:66322628-66322647 None:intergenic 30.0%
ATTATGTACACCAACATAAG+TGG + chr5.4:66323314-66323333 None:intergenic 30.0%
ATTCTGACGTATTTGATATG+TGG - chr5.4:66321437-66321456 MS.gene94183:intron 30.0%
CACTTCAAAAATGACAAAAG+TGG + chr5.4:66320476-66320495 None:intergenic 30.0%
CATTAACACAGGTATGATAA+GGG + chr5.4:66323034-66323053 None:intergenic 30.0%
CGCCAATGAAAATATTCATA+AGG - chr5.4:66321236-66321255 MS.gene94183:intron 30.0%
CTTATCATACCTGTGTTAAT+GGG - chr5.4:66323033-66323052 MS.gene94183:intron 30.0%
GGAAATTAATCATGAAGATG+AGG - chr5.4:66322906-66322925 MS.gene94183:intron 30.0%
GGTTGAAATTGATGTTTAAG+AGG - chr5.4:66323631-66323650 MS.gene94183:CDS 30.0%
GTTAATGGGATGTTAACATT+AGG - chr5.4:66321503-66321522 MS.gene94183:intron 30.0%
GTTTGCGATGAAAAGAAAAA+AGG + chr5.4:66321351-66321370 None:intergenic 30.0%
TAACATCCCATTAACCAAAA+TGG + chr5.4:66321498-66321517 None:intergenic 30.0%
TATATGCTTGCAATTAGTTG+GGG - chr5.4:66323514-66323533 MS.gene94183:CDS 30.0%
TATCAAGAGCTTCGTAAATA+TGG + chr5.4:66322047-66322066 None:intergenic 30.0%
TCAGATGTTTAGACATTACT+GGG + chr5.4:66322627-66322646 None:intergenic 30.0%
TCGCTTAATAAAACTTGAAC+AGG + chr5.4:66323167-66323186 None:intergenic 30.0%
TCTAATAAGCCAATCCAAAT+AGG + chr5.4:66320303-66320322 None:intergenic 30.0%
TGTTTGAATCACTATTTGAC+AGG - chr5.4:66322658-66322677 MS.gene94183:intron 30.0%
TTATGTACACCAACATAAGT+GGG + chr5.4:66323313-66323332 None:intergenic 30.0%
TTCTGACGTATTTGATATGT+GGG - chr5.4:66321438-66321457 MS.gene94183:intron 30.0%
! AAGGCTAAGTTAAGCTTTTT+AGG - chr5.4:66322383-66322402 MS.gene94183:CDS 30.0%
! ACCTGTTACAATAATGGAAT+TGG + chr5.4:66323133-66323152 None:intergenic 30.0%
! ACTAATTTTCCCACTTATGT+TGG - chr5.4:66323301-66323320 MS.gene94183:intron 30.0%
! ATTTGGATTTTGGACAGAAT+GGG - chr5.4:66321316-66321335 MS.gene94183:CDS 30.0%
! GTATAAAAGCATAGAGAAGA+GGG - chr5.4:66323363-66323382 MS.gene94183:intron 30.0%
! TATAAAAGCATAGAGAAGAG+GGG - chr5.4:66323364-66323383 MS.gene94183:intron 30.0%
! TATTTGGATTTTGGACAGAA+TGG - chr5.4:66321315-66321334 MS.gene94183:CDS 30.0%
! TCTTGTTGTGATTTATGATG+AGG - chr5.4:66321821-66321840 MS.gene94183:intron 30.0%
! TGGCAAACATATTTGGATTT+TGG - chr5.4:66321306-66321325 MS.gene94183:CDS 30.0%
! TGTTGTTATCATCTCAGTTT+TGG - chr5.4:66323441-66323460 MS.gene94183:intron 30.0%
!! AGATGATTTTTAAGCATCTC+TGG - chr5.4:66322850-66322869 MS.gene94183:intron 30.0%
!! TGTTTCTTTAGAGTAGATGA+AGG + chr5.4:66321180-66321199 None:intergenic 30.0%
!!! ATTCAGTAACCTTGCTTTTT+TGG - chr5.4:66322103-66322122 MS.gene94183:intron 30.0%
!!! CTAGTATGTGGTTGATTTTT+TGG - chr5.4:66320968-66320987 MS.gene94183:intron 30.0%
!!! TTCACTTTTTCATTGATCCT+TGG - chr5.4:66321030-66321049 MS.gene94183:intron 30.0%
AAAAATCAAGACGACATCTG+AGG - chr5.4:66322929-66322948 MS.gene94183:intron 35.0%
AAATCGAAGAGTTCAAGGAA+AGG - chr5.4:66319868-66319887 MS.gene94183:intron 35.0%
AAGTACCTGTGAGATTGATT+GGG - chr5.4:66320339-66320358 MS.gene94183:CDS 35.0%
AAGTGTCTACCTTAAGCTTT+CGG + chr5.4:66323208-66323227 None:intergenic 35.0%
AATAAAACTTGAACAGGAGC+AGG + chr5.4:66323161-66323180 None:intergenic 35.0%
AATCGAAGAGTTCAAGGAAA+GGG - chr5.4:66319869-66319888 MS.gene94183:intron 35.0%
ACTTACACATAGAGCCTATT+TGG - chr5.4:66320286-66320305 MS.gene94183:intron 35.0%
AGGCAACAAGAAAGTGAAAA+AGG - chr5.4:66321558-66321577 MS.gene94183:CDS 35.0%
ATCCAAACTGTCTCATTATG+TGG - chr5.4:66320833-66320852 MS.gene94183:intron 35.0%
ATTGATGTTTAAGAGGTCAG+TGG - chr5.4:66323638-66323657 MS.gene94183:CDS 35.0%
CCACATCAAGAAAATACATC+TGG + chr5.4:66322129-66322148 None:intergenic 35.0%
CCATTAACACAGGTATGATA+AGG + chr5.4:66323035-66323054 None:intergenic 35.0%
CCTTATCATACCTGTGTTAA+TGG - chr5.4:66323032-66323051 MS.gene94183:intron 35.0%
GAAAGTAATCACGAAGATGA+TGG - chr5.4:66322166-66322185 MS.gene94183:intron 35.0%
GCTGAAACCTGTTACAATAA+TGG + chr5.4:66323139-66323158 None:intergenic 35.0%
GGAAAAAATCGAAGAGTTCA+AGG - chr5.4:66319863-66319882 MS.gene94183:intron 35.0%
TAAACTAACCTATTCCTCCT+GGG + chr5.4:66323406-66323425 None:intergenic 35.0%
TAAAGAAACACGCGAAAAAC+CGG - chr5.4:66321190-66321209 MS.gene94183:intron 35.0%
TAAGTACCTGTGAGATTGAT+TGG - chr5.4:66320338-66320357 MS.gene94183:CDS 35.0%
TACCACATAATGAGACAGTT+TGG + chr5.4:66320838-66320857 None:intergenic 35.0%
TCTGACGTATTTGATATGTG+GGG - chr5.4:66321439-66321458 MS.gene94183:intron 35.0%
TGCTAAACAAGAGAGGTTAA+AGG - chr5.4:66322960-66322979 MS.gene94183:intron 35.0%
TGCTTAGTGGCAAACATATT+TGG - chr5.4:66321299-66321318 MS.gene94183:intron 35.0%
TTAAACTAACCTATTCCTCC+TGG + chr5.4:66323407-66323426 None:intergenic 35.0%
TTATACATGAAAGCTTGAGC+AGG + chr5.4:66322324-66322343 None:intergenic 35.0%
TTCGAAAAAGAGAGAATCAC+TGG + chr5.4:66319995-66320014 None:intergenic 35.0%
TTTGATATGTGGGGTGATAA+AGG - chr5.4:66321448-66321467 MS.gene94183:intron 35.0%
! ATAAAAGCATAGAGAAGAGG+GGG - chr5.4:66323365-66323384 MS.gene94183:intron 35.0%
! CCAGATGTATTTTCTTGATG+TGG - chr5.4:66322126-66322145 MS.gene94183:intron 35.0%
! GAAAGTCATCAGGTAGTTTT+TGG - chr5.4:66321762-66321781 MS.gene94183:CDS 35.0%
! GGTATAAAAGCATAGAGAAG+AGG - chr5.4:66323362-66323381 MS.gene94183:intron 35.0%
! TTCATTGGCGACTAAACTTT+TGG + chr5.4:66321226-66321245 None:intergenic 35.0%
! TTTGGATTTTGGACAGAATG+GGG - chr5.4:66321317-66321336 MS.gene94183:CDS 35.0%
!! ACCTGATTGGTAATGTAAAC+CGG + chr5.4:66322276-66322295 None:intergenic 35.0%
!! ATTTTAGTAGAGAGAGGTGA+GGG + chr5.4:66322827-66322846 None:intergenic 35.0%
!! TGCATGTTGATAGCTAATGA+AGG - chr5.4:66322364-66322383 MS.gene94183:CDS 35.0%
!! TTATCTGCGTTTCTAGTATG+TGG - chr5.4:66320956-66320975 MS.gene94183:intron 35.0%
!!! TATCATCTCAGTTTTGGAGA+GGG - chr5.4:66323447-66323466 MS.gene94183:intron 35.0%
!!! TATTTTAGTAGAGAGAGGTG+AGG + chr5.4:66322828-66322847 None:intergenic 35.0%
!!! TTAAGCATCTCTGGTTCTTT+TGG - chr5.4:66322859-66322878 MS.gene94183:intron 35.0%
!!! TTATCATCTCAGTTTTGGAG+AGG - chr5.4:66323446-66323465 MS.gene94183:intron 35.0%
!!! TTTATTTTATGGAGACCACG+TGG - chr5.4:66322416-66322435 MS.gene94183:CDS 35.0%
AGCAAGGTTACTGAATTAGC+AGG + chr5.4:66322099-66322118 None:intergenic 40.0%
AGGTACACGTTATTGCATAG+CGG - chr5.4:66321578-66321597 MS.gene94183:CDS 40.0%
ATTCTCCCAATCAATCTCAC+AGG + chr5.4:66320347-66320366 None:intergenic 40.0%
CACATAGAGCCTATTTGGAT+TGG - chr5.4:66320291-66320310 MS.gene94183:intron 40.0%
CAGCATCTCAAAAATTGCTG+AGG - chr5.4:66322885-66322904 MS.gene94183:intron 40.0%
GACAAGTTGCTAAACAAGAG+AGG - chr5.4:66322953-66322972 MS.gene94183:intron 40.0%
TACATCTGGCCAAAAAAGCA+AGG + chr5.4:66322115-66322134 None:intergenic 40.0%
TACATTAGCTACTGCTGTTG+CGG - chr5.4:66321874-66321893 MS.gene94183:intron 40.0%
TCAACAAAGGATGCTCTTTC+TGG - chr5.4:66319949-66319968 MS.gene94183:intron 40.0%
TTTGATGTGGCTAGATCTTG+CGG - chr5.4:66321071-66321090 MS.gene94183:intron 40.0%
! AACTTTTGGACACCACTTTC+CGG + chr5.4:66321212-66321231 None:intergenic 40.0%
! GTTGCACACTTCTAAAGGAT+CGG - chr5.4:66323341-66323360 MS.gene94183:intron 40.0%
! TATGATAAGGGAAGCACAGA+AGG + chr5.4:66323022-66323041 None:intergenic 40.0%
! TGTTAATGGGTGCAGTTGTT+TGG - chr5.4:66323046-66323065 MS.gene94183:intron 40.0%
! TTGGATTTTGGACAGAATGG+GGG - chr5.4:66321318-66321337 MS.gene94183:CDS 40.0%
! TTTAGAGTAGATGAAGGCAC+TGG + chr5.4:66321174-66321193 None:intergenic 40.0%
!! TTGGTTGTAGAGTACTGTGT+TGG - chr5.4:66320987-66321006 MS.gene94183:intron 40.0%
!!! GTTTACCTGGTGTTTTTTCG+TGG - chr5.4:66323550-66323569 MS.gene94183:CDS 40.0%
AAAAAAGAATACCGGCCACG+TGG + chr5.4:66322434-66322453 None:intergenic 45.0%
AAATGAATTGGGCCCTGAAC+CGG - chr5.4:66321919-66321938 MS.gene94183:intron 45.0%
AAGCTTGAGCAGGAAGGAAA+TGG + chr5.4:66322314-66322333 None:intergenic 45.0%
ACAAAGGATGCTCTTTCTGG+TGG - chr5.4:66319952-66319971 MS.gene94183:intron 45.0%
ACAACTGCACCCATTAACAC+AGG + chr5.4:66323045-66323064 None:intergenic 45.0%
ACATGAAAGCTTGAGCAGGA+AGG + chr5.4:66322320-66322339 None:intergenic 45.0%
ACCAACATCACTAACAGCAG+AGG + chr5.4:66321802-66321821 None:intergenic 45.0%
ACCTGATGACTTTCATGCGT+GGG + chr5.4:66321756-66321775 None:intergenic 45.0%
ATGTGCCACGAAAAAACACC+AGG + chr5.4:66323558-66323577 None:intergenic 45.0%
CAAGGAAAGGGAAGAAAGCA+TGG - chr5.4:66319881-66319900 MS.gene94183:intron 45.0%
CAGCAGTAGCTAATGTATCC+TGG + chr5.4:66321871-66321890 None:intergenic 45.0%
CGTCTTCTGCTTAGTTTACC+TGG - chr5.4:66323537-66323556 MS.gene94183:CDS 45.0%
GGATTAAATGAGCATCCTGG+AGG + chr5.4:66321735-66321754 None:intergenic 45.0%
GGGTTGTTGCACACTTCTAA+AGG - chr5.4:66323336-66323355 MS.gene94183:intron 45.0%
GTCTACCTTAAGCTTTCGGA+TGG + chr5.4:66323204-66323223 None:intergenic 45.0%
GTGGGATTAAATGAGCATCC+TGG + chr5.4:66321738-66321757 None:intergenic 45.0%
TACCTGATGACTTTCATGCG+TGG + chr5.4:66321757-66321776 None:intergenic 45.0%
TACTCATATTCCAGCTGTCG+AGG - chr5.4:66321704-66321723 MS.gene94183:intron 45.0%
TACTTGTGCTTTCCTAAGCG+AGG + chr5.4:66322994-66323013 None:intergenic 45.0%
TCAGAAATAGCTTCTCCAGC+AGG + chr5.4:66321959-66321978 None:intergenic 45.0%
TCCTCTGCTGTTAGTGATGT+TGG - chr5.4:66321798-66321817 MS.gene94183:CDS 45.0%
TCGACAGCTGGAATATGAGT+AGG + chr5.4:66321705-66321724 None:intergenic 45.0%
TCTCCAGCAGGAACAGTTAA+AGG + chr5.4:66321947-66321966 None:intergenic 45.0%
TGGATCCATCCGAAAGCTTA+AGG - chr5.4:66323196-66323215 MS.gene94183:intron 45.0%
TTCCAAAACCCAGGAGGAAT+AGG - chr5.4:66323395-66323414 MS.gene94183:intron 45.0%
! AACCTATTCCTCCTGGGTTT+TGG + chr5.4:66323400-66323419 None:intergenic 45.0%
! GCCGGTTTACATTACCAATC+AGG - chr5.4:66322272-66322291 MS.gene94183:CDS 45.0%
!! AAGGCACTGGCTTAACAAAC+TGG + chr5.4:66321161-66321180 None:intergenic 45.0%
!!! TCTCAGTTTTGGAGAGGGTT+TGG - chr5.4:66323452-66323471 MS.gene94183:intron 45.0%
!! CAAAATAAATAAATAAAAAT+GGG + chr5.4:66320038-66320057 None:intergenic 5.0%
AAGCATAGAGAAGAGGGGGT+TGG - chr5.4:66323369-66323388 MS.gene94183:intron 50.0%
ACACGCGAAAAACCGGAAAG+TGG - chr5.4:66321197-66321216 MS.gene94183:intron 50.0%
GTGCCTTTAACTGTTCCTGC+TGG - chr5.4:66321941-66321960 MS.gene94183:intron 50.0%
TCCCACGCATGAAAGTCATC+AGG - chr5.4:66321752-66321771 MS.gene94183:CDS 50.0%
TGGTTGTTCCAAAACCCAGG+AGG - chr5.4:66323389-66323408 MS.gene94183:intron 50.0%
TGTCATGCAGACGCAGATGA+AGG - chr5.4:66321538-66321557 MS.gene94183:CDS 50.0%
TTAGTAGAGAGAGGTGAGGG+AGG + chr5.4:66322824-66322843 None:intergenic 50.0%
TTGTGCTTTCCTAAGCGAGG+AGG + chr5.4:66322991-66323010 None:intergenic 50.0%
! GCAGGAACAGTTAAAGGCAC+CGG + chr5.4:66321941-66321960 None:intergenic 50.0%
! GGTTGGTTGTTCCAAAACCC+AGG - chr5.4:66323386-66323405 MS.gene94183:intron 50.0%
! TTTTATGGAGACCACGTGGC+CGG - chr5.4:66322420-66322439 MS.gene94183:intron 50.0%
!! ACAGTTAAAGGCACCGGTTC+AGG + chr5.4:66321935-66321954 None:intergenic 50.0%
!! CAGTTAAAGGCACCGGTTCA+GGG + chr5.4:66321934-66321953 None:intergenic 50.0%
AAGGCATGTCCTCCTCGCTT+AGG - chr5.4:66322979-66322998 MS.gene94183:intron 55.0%
GGAGGATCAACCTCGACAGC+TGG + chr5.4:66321717-66321736 None:intergenic 60.0%
! GCTGTCGAGGTTGATCCTCC+AGG - chr5.4:66321717-66321736 MS.gene94183:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 66319859 66323663 66319859 ID=MS.gene94183
chr5.4 mRNA 66319859 66323663 66319859 ID=MS.gene94183.t1;Parent=MS.gene94183
chr5.4 exon 66323495 66323663 66323495 ID=MS.gene94183.t1.exon1;Parent=MS.gene94183.t1
chr5.4 CDS 66323495 66323663 66323495 ID=cds.MS.gene94183.t1;Parent=MS.gene94183.t1
chr5.4 exon 66322265 66322437 66322265 ID=MS.gene94183.t1.exon2;Parent=MS.gene94183.t1
chr5.4 CDS 66322265 66322437 66322265 ID=cds.MS.gene94183.t1;Parent=MS.gene94183.t1
chr5.4 exon 66322053 66322101 66322053 ID=MS.gene94183.t1.exon3;Parent=MS.gene94183.t1
chr5.4 CDS 66322053 66322101 66322053 ID=cds.MS.gene94183.t1;Parent=MS.gene94183.t1
chr5.4 exon 66321943 66321974 66321943 ID=MS.gene94183.t1.exon4;Parent=MS.gene94183.t1
chr5.4 CDS 66321943 66321974 66321943 ID=cds.MS.gene94183.t1;Parent=MS.gene94183.t1
chr5.4 exon 66321749 66321829 66321749 ID=MS.gene94183.t1.exon5;Parent=MS.gene94183.t1
chr5.4 CDS 66321749 66321829 66321749 ID=cds.MS.gene94183.t1;Parent=MS.gene94183.t1
chr5.4 exon 66321537 66321650 66321537 ID=MS.gene94183.t1.exon6;Parent=MS.gene94183.t1
chr5.4 CDS 66321537 66321650 66321537 ID=cds.MS.gene94183.t1;Parent=MS.gene94183.t1
chr5.4 exon 66321304 66321392 66321304 ID=MS.gene94183.t1.exon7;Parent=MS.gene94183.t1
chr5.4 CDS 66321304 66321392 66321304 ID=cds.MS.gene94183.t1;Parent=MS.gene94183.t1
chr5.4 exon 66320723 66320842 66320723 ID=MS.gene94183.t1.exon8;Parent=MS.gene94183.t1
chr5.4 CDS 66320723 66320842 66320723 ID=cds.MS.gene94183.t1;Parent=MS.gene94183.t1
chr5.4 exon 66320512 66320634 66320512 ID=MS.gene94183.t1.exon9;Parent=MS.gene94183.t1
chr5.4 CDS 66320512 66320634 66320512 ID=cds.MS.gene94183.t1;Parent=MS.gene94183.t1
chr5.4 exon 66320305 66320371 66320305 ID=MS.gene94183.t1.exon10;Parent=MS.gene94183.t1
chr5.4 CDS 66320305 66320371 66320305 ID=cds.MS.gene94183.t1;Parent=MS.gene94183.t1
chr5.4 exon 66320106 66320185 66320106 ID=MS.gene94183.t1.exon11;Parent=MS.gene94183.t1
chr5.4 CDS 66320106 66320185 66320106 ID=cds.MS.gene94183.t1;Parent=MS.gene94183.t1
chr5.4 exon 66319859 66319871 66319859 ID=MS.gene94183.t1.exon12;Parent=MS.gene94183.t1
chr5.4 CDS 66319859 66319871 66319859 ID=cds.MS.gene94183.t1;Parent=MS.gene94183.t1
Gene Sequence

>MS.gene94183

ATGGGGAAAAAATCGAAGAGTTCAAGGAAAGGGAAGAAAGCATGGAGAGCTAACATAAGCACAGAAGAAATCGAAGATTTCTTTGAGAAATCAACAAAGGATGCTCTTTCTGGTGGTTCTCTTCAAGCTGTTTCCAGTGATTCTCTCTTTTTCGAAGACAAATCAAAAGGTATGTACCCATTTTTATTTATTTATTTTGGTTAATTATTTTTAGATTATATGAAAATGATGTTTTTAATTATCAATTGCATAAGCTTATTCTATGACATTTACACTTATGAGATTATCTTAGAGCTTATAAAAATAACTTATGACATGTACACAAGCTGTTTTCAGCTTATTTCTGAAAGCTATCAATGATAGCTTATGACATCGACTTAACTGATAGAAAAGTAGTTACTTTATTTTATCTTTTGTTATAGAAATGACTTACACATAGAGCCTATTTGGATTGGCTTATTAGAGCTTATCTACGAGTATAAGTACCTGTGAGATTGATTGGGAGAATTTATGAAAACAACTTATGACATGTTCATCATAAGTTGTTTTAGTTTTAGGGTGCGTTTGCTTAAGATTTTTTTAGAAAAAGCTCTTTTATTTTTTAATACAGAAAACCACTTTTGTCATTTTTGAAGTGTTTGTTTTGGATTTTATAAAAAAAAATCATTTTTTACTCTATAAAGAAAAGCTATTAGGATTAGCTTCTCACAAAATCTATTTTATTTTTTCAAAACAAGGAGGTAACAGATGAACTAGTTAAAATTCATTTTCTTTTAGGTAGTAAACAAACAGAAATTCATTTGTAACACAATCTTTTTTTTTAGGCTAAAACAAACACGCCCTTGATCTTATTCCCATTAGTTCTCTAAGATAGCTTATGAAAACAACTTATAGGAATGAGCTTATACGAAGTGCTTACATGACAATTGCTTATGTTATAAGCTGCAAATTAAGCTGTTTATTCAAACAGGGTCATCCAAACTGTCTCATTATGTGGTAGCAGACCTATTATAATTGATGTGTTTTCCATGAATTACATAAACTTGTACGAAAAATGGTTTTTTATTTTAGTTTATGTTGAAGATGACGAAATACAATTATCTGCGTTTCTAGTATGTGGTTGATTTTTTGGTTGTAGAGTACTGTGTTGGTAGAGAAATATTAACCAGAATTCACTTTTTCATTGATCCTTGGATTTGAATTTATTTTAAATTTGATGTGGCTAGATCTTGCGGTAAAGAAGAAGATCGAAAAACATAGAGAAAAAGTGCTTCATGTTGATAGCATACTACAAAAAAACCAGTTTGTTAAGCCAGTGCCTTCATCTACTCTAAAGAAACACGCGAAAAACCGGAAAGTGGTGTCCAAAAGTTTAGTCGCCAATGAAAATATTCATAAGGTCAGTAAATTGTTATTCATGCAGAAAGCTAAATAATAATATGCTTAGTGGCAAACATATTTGGATTTTGGACAGAATGGGGGAATTACTCCTTTTTTCTTTTCATCGCAAACCTCTTTTAAAATTTGTTTTATTGACATTCTTCTTTAATAATCTATATCAGGAGGGTTCCGTGTTAGATTCTGACGTATTTGATATGTGGGGTGATAAAGGTACTTACTCTAAAGCATTTAGTATCCATTTTGGTTAATGGGATGTTAACATTAGGATTCTTTTATATTGTCATGCAGACGCAGATGAAGGCAACAAGAAAGTGAAAAAGGTACACGTTATTGCATAGCGGATTCTATCTAATGTTTCTTCTTCCATTTTATTGTTGCTGCACATTCAGTGTTTCAGTTGATATTTATAATATGATTGCTGACTGCTTCACAGTTGTGCAAGCCTACTCATATTCCAGCTGTCGAGGTTGATCCTCCAGGATGCTCATTTAATCCCACGCATGAAAGTCATCAGGTAGTTTTTGGAAAAATTATGTGTTCCTCTGCTGTTAGTGATGTTGGTCTTGTTGTGATTTATGATGAGGAATTTTAAGAACTTTATTGTTTAACCAGGATACATTAGCTACTGCTGTTGCGGAAGAAATGATTAAAGTCTACAGAAATGAATTGGGCCCTGAACCGGTGCCTTTAACTGTTCCTGCTGGAGAAGCTATTTCTGAAGAAGATGTGAGTTTCATTGTTTTCGTTTATGTAATATGTAGCTACTGTACCTATGAATTTGTTTCCATATTTACGAAGCTCTTGATATGTGAATTTATACGTCTTGAGTCTCTATTCCTGCTAATTCAGTAACCTTGCTTTTTTGGCCAGATGTATTTTCTTGATGTGGAGAAGAGTGACGATGATGAAAGTAATCACGAAGATGATGGTGAAAATGAAGATGATGCGTCAGAGAAAAAGTAAGTTATCATTAACTTAGTTAGCTTCTCTCAGTTTAAATACTTTCTTTTTTGCCGGTTTACATTACCAATCAGGTCATAAAAATAACATTCCATTTCCTTCCTGCTCAAGCTTTCATGTATAATTTGAATTCAGACATGCAAATGCATGTTGATAGCTAATGAAGGCTAAGTTAAGCTTTTTAGGTGTATAAATTTTTATTTTATGGAGACCACGTGGCCGGTATTCTTTTTTTGAAAGCAGTATGTAAATGTGATATTATATTTAGACTGTCTTGCTTAAGCAGTATGTAAATGTGATATTATATTTAGACTGTCTTGCTTAATTTCATTTTGAACACTGGAAAGTAGATCCACTTAATATATTTGTAAGTAATATATTTCTGCAGCGTATTTTTTTCTAAACCCAGTAATGTCTAAACATCTGATGTATTTGTATTGTTTGAATCACTATTTGACAGGCCCATTAAAACAAAGAAAGTGACTAGAGTTGAGTTGAATAAGAGAATTCGGCGCAGAGAACAATTGAAAAAAGAAGCAGAATCAAAGAAGAAGAAGATTTTCTCAAAAGAAATTGATAGGTAATATGACTATTCTCTTATCCTCCCTCACCTCTCTCTACTAAAATAAAAGATGATTTTTAAGCATCTCTGGTTCTTTTGGATGCAGCATCTCAAAAATTGCTGAGGAAATTAATCATGAAGATGAGGAAAAATCAAGACGACATCTGAGGCGACAAGTTGCTAAACAAGAGAGGTTAAAGGCATGTCCTCCTCGCTTAGGAAAGCACAAGTAAGCAGCCTTCTGTGCTTCCCTTATCATACCTGTGTTAATGGGTGCAGTTGTTTGGTTTGTAGTTTGATGTTCTAGTGAATTACACCATTTCTACAACAATTACGTTTACGTTTATACCAATTCCATTATTGTAACAGGTTTCAGCCTGCTCCTGTTCAAGTTTTATTAAGCGAAGAGATAAATGGATCCATCCGAAAGCTTAAGGTAGACACTTGTAAATTATATTTTGATAATTTTGTTGACTCAGTTTATTTAAACATGCAATAAGTTTCCCTGCTTTTTTTTAGACTAATTTTCCCACTTATGTTGGTGTACATAATTAGGGTTGTTGCACACTTCTAAAGGATCGGTATAAAAGCATAGAGAAGAGGGGGTTGGTTGTTCCAAAACCCAGGAGGAATAGGTTAGTTTAAACTGCTATTATTGTTGTTGTTATCATCTCAGTTTTGGAGAGGGTTTGGTTATTATTTTGTTTAGAGAAAAATGGATCATGTATTTATTATATGCTTGCAATTAGTTGGGGCGTCTTCTGCTTAGTTTACCTGGTGTTTTTTCGTGGCACATGTGTGATAGATATGATTTTATATGAACTAGATATTTTTTTTTAATATTAATTTGGTTGAAATTGATGTTTAAGAGGTCAGTGGTAA

Protein sequence

>MS.gene94183.t1

MGKKSKSSRKGKKAWRANISTEEIEDFFEKSTKDALSGGSLQAVSSDSLFFEDKSKDLAVKKKIEKHREKVLHVDSILQKNQFVKPVPSSTLKKHAKNRKVVSKSLVANENIHKEGSVLDSDVFDMWGDKDADEGNKKVKKLCKPTHIPAVEVDPPGCSFNPTHESHQDTLATAVAEEMIKVYRNELGPEPVPLTVPAGEAISEEDMYFLDVEKSDDDESNHEDDGENEDDASEKKPIKTKKVTRVELNKRIRRREQLKKEAESKKKKIFSKEIDSISKIAEEINHEDEEKSRRHLRRQVAKQERLKACPPRLGKHKFQPAPVQVLLSEEINGSIRKLKGCCTLLKDRYKSIEKRGLVVPKPRRNRGQW