AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040601

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040601.t1 MTR_2g064460 87.696 447 34 2 1 446 1 427 0.0 670
MS.gene040601.t1 MTR_2g064460 87.727 440 33 2 1 439 1 420 0.0 662
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040601.t1 AT3G58660 51.118 313 134 4 10 306 28 337 5.88e-107 324
MS.gene040601.t1 AT2G42650 50.313 320 139 8 10 315 8 321 1.92e-101 308
MS.gene040601.t1 AT1G06380 50.769 260 105 5 1 244 1 253 3.16e-81 251

Find 91 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGAGTCTCTTGCTTTGC+CGG 0.274544 2.1:-28800140 MS.gene040601:CDS
TTCGTCTTCGTCGAAGAGTT+TGG 0.278193 2.1:+28800744 None:intergenic
TGCAACGGTGTCGGCGTTGC+TGG 0.290542 2.1:+28800822 None:intergenic
GCCGTTGTTGCCGAGGTTAT+TGG 0.297689 2.1:-28800416 MS.gene040601:CDS
CCGTAGACTCTCTTCTTAAA+TGG 0.298973 2.1:-28800795 MS.gene040601:CDS
CCGTTGTTGCCGAGGTTATT+GGG 0.308899 2.1:-28800415 MS.gene040601:CDS
TTTCTTCTGAGCTTCGTCTT+TGG 0.323418 2.1:+28800570 None:intergenic
GATTCATGAGATTAAGTATA+TGG 0.340892 2.1:-28799999 MS.gene040601:CDS
GCCGGTTTATCAGTCTGTTC+CGG 0.361590 2.1:-28800122 MS.gene040601:CDS
ATCAGTCTGTTCCGGATGTT+AGG 0.361685 2.1:-28800114 MS.gene040601:CDS
TCGTCTTCGTCGAAGAGTTT+GGG 0.362865 2.1:+28800745 None:intergenic
AGCTTCAGAATCTTCGAAAT+AGG 0.368114 2.1:+28800529 None:intergenic
TGTTAGTGGTGGTGGTGATA+AGG 0.379181 2.1:-28799903 MS.gene040601:CDS
TAAGGATTTGGAGGATAAGT+TGG 0.380856 2.1:-28800074 MS.gene040601:CDS
GAGATGAGAGAGTGAGGGAT+TGG 0.381358 2.1:+28800652 None:intergenic
TGGATTTGCAGAAGAAGAAT+TGG 0.381611 2.1:-28800354 MS.gene040601:CDS
AAAGAGGATTTGAGTGAGTT+GGG 0.391350 2.1:-28799806 MS.gene040601:CDS
GTGAATAAGAAGAGGAAGAA+AGG 0.423770 2.1:-28799836 MS.gene040601:CDS
AGATGAGAGAGTGAGGGATT+GGG 0.425499 2.1:+28800653 None:intergenic
AAAAGAGGATTTGAGTGAGT+TGG 0.432057 2.1:-28799807 MS.gene040601:CDS
GAAGTCATCCGTGAAGGAAA+AGG 0.432264 2.1:-28799681 MS.gene040601:CDS
GAAGGTGGCTAAGTTGAGTA+TGG 0.444292 2.1:-28800263 MS.gene040601:CDS
GGATGTTAGGTTGAAGATTG+AGG 0.450663 2.1:-28800101 MS.gene040601:CDS
TCCGGAACAGACTGATAAAC+CGG 0.451271 2.1:+28800121 None:intergenic
ATCGTCCGTTCGAGGCGAAA+AGG 0.455009 2.1:-28800486 MS.gene040601:CDS
TAAATCATTGGTCAAGGATG+AGG 0.457265 2.1:-28799573 MS.gene040601:CDS
GTTTAGCGGAAATAAATCAT+TGG 0.458193 2.1:-28799585 MS.gene040601:CDS
GCAAAGAAGAGTAAGAAGAA+AGG 0.467917 2.1:-28800025 MS.gene040601:CDS
CAAAGAAGAGTAAGAAGAAA+GGG 0.472888 2.1:-28800024 MS.gene040601:CDS
GAAGAGGAAGATTCCGGTGC+AGG 0.476004 2.1:-28800377 MS.gene040601:CDS
GAAGAAGTGCTCATGTTTAG+CGG 0.478710 2.1:-28799599 MS.gene040601:CDS
GTTGGTGAAGGATGAGAAGA+AGG 0.482303 2.1:-28800056 MS.gene040601:CDS
ATTGGTCAAGGATGAGGGTT+CGG 0.485154 2.1:-28799567 MS.gene040601:CDS
GCTAAGAGGAAGAAGAAAGA+TGG 0.489873 2.1:-28799758 MS.gene040601:CDS
AGCTCAGAAGAAAGTTCAAT+CGG 0.490415 2.1:-28800560 MS.gene040601:CDS
ATCAATGATGAGACACTGTT+CGG 0.491219 2.1:+28800621 None:intergenic
GATGTTAGGTTGAAGATTGA+GGG 0.491728 2.1:-28800100 MS.gene040601:CDS
AAGTCATCCGTGAAGGAAAA+GGG 0.497780 2.1:-28799680 MS.gene040601:CDS
TTCTGCAAATCCACCTGCAC+CGG 0.501939 2.1:+28800364 None:intergenic
GGGAAGTGTGAAATCATTGA+AGG 0.502129 2.1:-28799786 MS.gene040601:CDS
GGTGTCGGCGTTGCTGGTTA+CGG 0.502649 2.1:+28800828 None:intergenic
GTTGATGATGATAGTGAGAT+TGG 0.503978 2.1:-28799881 MS.gene040601:CDS
CCCAATAACCTCGGCAACAA+CGG 0.513459 2.1:+28800415 None:intergenic
CTAAAGAAAATCCCATCAAA+AGG 0.519721 2.1:-28800697 MS.gene040601:CDS
GAGAAAGACGGCAGATGTGA+AGG 0.519834 2.1:-28799534 MS.gene040601:CDS
TGAGAATGTTGTTGCTGCGA+TGG 0.520350 2.1:-28800224 MS.gene040601:CDS
CAAGAGTAAGAAAAGTAAGA+AGG 0.531808 2.1:-28799510 MS.gene040601:CDS
CGGAAATAAATCATTGGTCA+AGG 0.532880 2.1:-28799579 MS.gene040601:CDS
TTTGGAGGATAAGTTGGTGA+AGG 0.536369 2.1:-28800068 MS.gene040601:CDS
CATTGAAGGGTTCTGCTAAG+AGG 0.537258 2.1:-28799772 MS.gene040601:CDS
AGAAGAGTAAGAAGAAAGGG+AGG 0.540100 2.1:-28800021 MS.gene040601:CDS
TTGGTGAAATCGAGAGTGGA+GGG 0.540990 2.1:-28799862 MS.gene040601:CDS
AAAGAAGAAGAATAACGAAA+GGG 0.543006 2.1:-28799654 MS.gene040601:CDS
CCATTTAAGAAGAGAGTCTA+CGG 0.543890 2.1:+28800795 None:intergenic
AAGAAGAAGAATAACGAAAG+GGG 0.546809 2.1:-28799653 MS.gene040601:CDS
TCAATCTTCAACCTAACATC+CGG 0.551342 2.1:+28800103 None:intergenic
GAGATTGGTGAAATCGAGAG+TGG 0.552309 2.1:-28799866 MS.gene040601:CDS
GACGGATTATCGTCCGTTCG+AGG 0.556801 2.1:-28800494 MS.gene040601:CDS
GACTTGTAGTGTTGTGAAGG+TGG 0.560711 2.1:-28800278 MS.gene040601:CDS
TCGTCTTTGGTGATACGAGA+GGG 0.562374 2.1:+28800583 None:intergenic
AATGTGAATGCTGCAGAAGA+AGG 0.562909 2.1:-28799731 MS.gene040601:CDS
CGTTGTTGCCGAGGTTATTG+GGG 0.570182 2.1:-28800414 MS.gene040601:CDS
GAGGAAGATTCCGGTGCAGG+TGG 0.571715 2.1:-28800374 MS.gene040601:CDS
CTATTGTGCCGTTGTTGCCG+AGG 0.574937 2.1:-28800423 MS.gene040601:CDS
GAGGGTTGGTGAATAAGAAG+AGG 0.578286 2.1:-28799844 MS.gene040601:CDS
TTCGTCTTTGGTGATACGAG+AGG 0.580043 2.1:+28800582 None:intergenic
CTAAGAGGAAGAAGAAAGAT+GGG 0.580491 2.1:-28799757 MS.gene040601:CDS
AAATCATTGGTCAAGGATGA+GGG 0.583425 2.1:-28799572 MS.gene040601:CDS
GAAGCTTTCGAAGCTTATGA+CGG 0.584390 2.1:-28800512 MS.gene040601:CDS
GCTGCGGAGATGAGAGAGTG+AGG 0.586434 2.1:+28800646 None:intergenic
GAATGTTGTTGCTGCGATGG+AGG 0.588380 2.1:-28800221 MS.gene040601:CDS
GAGACACTGTTCGGAAGCTG+CGG 0.591132 2.1:+28800630 None:intergenic
ATTGGTGAAATCGAGAGTGG+AGG 0.592168 2.1:-28799863 MS.gene040601:CDS
AACTGCTTCCCCAATAACCT+CGG 0.596591 2.1:+28800406 None:intergenic
TTGGAAGGAGCAGATTGAGA+AGG 0.597099 2.1:-28800335 MS.gene040601:CDS
AATGTTGTTGCTGCGATGGA+GGG 0.600510 2.1:-28800220 MS.gene040601:CDS
TGGGACTTGTAGTGTTGTGA+AGG 0.601975 2.1:-28800281 MS.gene040601:CDS
GATGATAGAATGAGTTCAGA+TGG 0.609600 2.1:-28799977 MS.gene040601:CDS
GAATAAGAAGTCATCCGTGA+AGG 0.611646 2.1:-28799687 MS.gene040601:CDS
CAAAGAAGAAGAATAACGAA+AGG 0.611890 2.1:-28799655 MS.gene040601:CDS
TGCGATGGAGGGTGTTGTCG+AGG 0.617796 2.1:-28800209 MS.gene040601:CDS
GGAAGTGTGAAATCATTGAA+GGG 0.619801 2.1:-28799785 MS.gene040601:CDS
TGAAATCGAGAGTGGAGGGT+TGG 0.620477 2.1:-28799858 MS.gene040601:CDS
TGTTAGGTTGAAGATTGAGG+GGG 0.626587 2.1:-28800098 MS.gene040601:CDS
TTTGCAGAAGAAGAATTGGA+AGG 0.627135 2.1:-28800350 MS.gene040601:CDS
ATGTTAGGTTGAAGATTGAG+GGG 0.627796 2.1:-28800099 MS.gene040601:CDS
AGAAGAAGAATAACGAAAGG+GGG 0.637925 2.1:-28799652 MS.gene040601:CDS
CTGCGGAGATGAGAGAGTGA+GGG 0.639313 2.1:+28800647 None:intergenic
GTCGGCGTTGCTGGTTACGG+TGG 0.647021 2.1:+28800831 None:intergenic
GGACAAGAAGAAGAGAAAGA+CGG 0.661114 2.1:-28799546 MS.gene040601:CDS
GAAGAAGAATAACGAAAGGG+GGG 0.692304 2.1:-28799651 MS.gene040601:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAGAAGAAGAATAACGAAA+GGG - chr2.1:28800683-28800702 MS.gene040601:CDS 25.0%
! GATTCATGAGATTAAGTATA+TGG - chr2.1:28800338-28800357 MS.gene040601:CDS 25.0%
!! TTTTGATGGGATTTTCTTTA+GGG + chr2.1:28799641-28799660 None:intergenic 25.0%
AAGAAGAAGAATAACGAAAG+GGG - chr2.1:28800684-28800703 MS.gene040601:CDS 30.0%
CAAAGAAGAAGAATAACGAA+AGG - chr2.1:28800682-28800701 MS.gene040601:CDS 30.0%
CAAAGAAGAGTAAGAAGAAA+GGG - chr2.1:28800313-28800332 MS.gene040601:CDS 30.0%
CAAGAGTAAGAAAAGTAAGA+AGG - chr2.1:28800827-28800846 MS.gene040601:CDS 30.0%
CTAAAGAAAATCCCATCAAA+AGG - chr2.1:28799640-28799659 MS.gene040601:CDS 30.0%
GTTTAGCGGAAATAAATCAT+TGG - chr2.1:28800752-28800771 MS.gene040601:CDS 30.0%
! ATCGATGATGATTTTGTTAG+TGG - chr2.1:28800420-28800439 MS.gene040601:CDS 30.0%
! CTTTTGATGGGATTTTCTTT+AGG + chr2.1:28799642-28799661 None:intergenic 30.0%
!! GTCTTTTCATGTTAAGTTGT+TGG - chr2.1:28800179-28800198 MS.gene040601:CDS 30.0%
!! TTTTAAGAAGAGGAAGATTC+CGG - chr2.1:28799954-28799973 MS.gene040601:CDS 30.0%
AAAAGAGGATTTGAGTGAGT+TGG - chr2.1:28800530-28800549 MS.gene040601:CDS 35.0%
AAAGAGGATTTGAGTGAGTT+GGG - chr2.1:28800531-28800550 MS.gene040601:CDS 35.0%
AAATCATTGGTCAAGGATGA+GGG - chr2.1:28800765-28800784 MS.gene040601:CDS 35.0%
AGAAGAAGAATAACGAAAGG+GGG - chr2.1:28800685-28800704 MS.gene040601:CDS 35.0%
AGCTCAGAAGAAAGTTCAAT+CGG - chr2.1:28799777-28799796 MS.gene040601:CDS 35.0%
AGCTTCAGAATCTTCGAAAT+AGG + chr2.1:28799811-28799830 None:intergenic 35.0%
ATCAATGATGAGACACTGTT+CGG + chr2.1:28799719-28799738 None:intergenic 35.0%
CCATTTAAGAAGAGAGTCTA+CGG + chr2.1:28799545-28799564 None:intergenic 35.0%
CGGAAATAAATCATTGGTCA+AGG - chr2.1:28800758-28800777 MS.gene040601:CDS 35.0%
CTAAGAGGAAGAAGAAAGAT+GGG - chr2.1:28800580-28800599 MS.gene040601:CDS 35.0%
GAAGAAAGGAGTGAAAAAAG+AGG - chr2.1:28800515-28800534 MS.gene040601:CDS 35.0%
GATGATAGAATGAGTTCAGA+TGG - chr2.1:28800360-28800379 MS.gene040601:CDS 35.0%
GCAAAGAAGAGTAAGAAGAA+AGG - chr2.1:28800312-28800331 MS.gene040601:CDS 35.0%
GTGAATAAGAAGAGGAAGAA+AGG - chr2.1:28800501-28800520 MS.gene040601:CDS 35.0%
TAAATCATTGGTCAAGGATG+AGG - chr2.1:28800764-28800783 MS.gene040601:CDS 35.0%
TAAGGATTTGGAGGATAAGT+TGG - chr2.1:28800263-28800282 MS.gene040601:CDS 35.0%
TCAATCTTCAACCTAACATC+CGG + chr2.1:28800237-28800256 None:intergenic 35.0%
TGGATTTGCAGAAGAAGAAT+TGG - chr2.1:28799983-28800002 MS.gene040601:CDS 35.0%
TTTGCAGAAGAAGAATTGGA+AGG - chr2.1:28799987-28800006 MS.gene040601:CDS 35.0%
! GATGATGATTTTGTTAGTGG+TGG - chr2.1:28800423-28800442 MS.gene040601:CDS 35.0%
! GGAAGTGTGAAATCATTGAA+GGG - chr2.1:28800552-28800571 MS.gene040601:CDS 35.0%
!! ATGTTAGGTTGAAGATTGAG+GGG - chr2.1:28800238-28800257 MS.gene040601:CDS 35.0%
!! GATGTTAGGTTGAAGATTGA+GGG - chr2.1:28800237-28800256 MS.gene040601:CDS 35.0%
!! GTTGATGATGATAGTGAGAT+TGG - chr2.1:28800456-28800475 MS.gene040601:CDS 35.0%
!!! ATGGGATTTTCTTTAGGGTT+AGG + chr2.1:28799636-28799655 None:intergenic 35.0%
!!! CTTCTGCTTTGTTGTTTTTG+AGG - chr2.1:28800031-28800050 MS.gene040601:CDS 35.0%
!!! CTTTGTTGTTTTTGAGGACT+GGG - chr2.1:28800037-28800056 MS.gene040601:CDS 35.0%
!!! GGAAGCAGTTTTTTAAGAAG+AGG - chr2.1:28799944-28799963 MS.gene040601:CDS 35.0%
!!! TTTTCTTTAGGGTTAGGATG+AGG + chr2.1:28799630-28799649 None:intergenic 35.0%
AAGTCATCCGTGAAGGAAAA+GGG - chr2.1:28800657-28800676 MS.gene040601:CDS 40.0%
AATGTGAATGCTGCAGAAGA+AGG - chr2.1:28800606-28800625 MS.gene040601:CDS 40.0%
AGAAGAGTAAGAAGAAAGGG+AGG - chr2.1:28800316-28800335 MS.gene040601:CDS 40.0%
CCGTAGACTCTCTTCTTAAA+TGG - chr2.1:28799542-28799561 MS.gene040601:CDS 40.0%
GAAGAAGAATAACGAAAGGG+GGG - chr2.1:28800686-28800705 MS.gene040601:CDS 40.0%
GAAGCTTTCGAAGCTTATGA+CGG - chr2.1:28799825-28799844 MS.gene040601:CDS 40.0%
GAATAAGAAGTCATCCGTGA+AGG - chr2.1:28800650-28800669 MS.gene040601:CDS 40.0%
GCTAAGAGGAAGAAGAAAGA+TGG - chr2.1:28800579-28800598 MS.gene040601:CDS 40.0%
GGACAAGAAGAAGAGAAAGA+CGG - chr2.1:28800791-28800810 MS.gene040601:CDS 40.0%
TTTCTTCTGAGCTTCGTCTT+TGG + chr2.1:28799770-28799789 None:intergenic 40.0%
! AGGTTTTACCGAAGAAATGG+GGG - chr2.1:28800148-28800167 MS.gene040601:CDS 40.0%
! CGAGGTTTTACCGAAGAAAT+GGG - chr2.1:28800146-28800165 MS.gene040601:CDS 40.0%
! CTTTGAACCCTTTTCCTTCA+CGG + chr2.1:28800667-28800686 None:intergenic 40.0%
! GAGGTTTTACCGAAGAAATG+GGG - chr2.1:28800147-28800166 MS.gene040601:CDS 40.0%
! GATGATTTTGTTAGTGGTGG+TGG - chr2.1:28800426-28800445 MS.gene040601:CDS 40.0%
! GGGAAGTGTGAAATCATTGA+AGG - chr2.1:28800551-28800570 MS.gene040601:CDS 40.0%
! TCGAGGTTTTACCGAAGAAA+TGG - chr2.1:28800145-28800164 MS.gene040601:CDS 40.0%
!! GAAGAAGTGCTCATGTTTAG+CGG - chr2.1:28800738-28800757 MS.gene040601:CDS 40.0%
!! GGATGTTAGGTTGAAGATTG+AGG - chr2.1:28800236-28800255 MS.gene040601:CDS 40.0%
!! GTCGAAGAGTTTGGGTTTTT+CGG + chr2.1:28799587-28799606 None:intergenic 40.0%
!! TGTTAGGTTGAAGATTGAGG+GGG - chr2.1:28800239-28800258 MS.gene040601:CDS 40.0%
!! TTTGGAGGATAAGTTGGTGA+AGG - chr2.1:28800269-28800288 MS.gene040601:CDS 40.0%
!!! GCTTTGTTGTTTTTGAGGAC+TGG - chr2.1:28800036-28800055 MS.gene040601:CDS 40.0%
AACTGCTTCCCCAATAACCT+CGG + chr2.1:28799934-28799953 None:intergenic 45.0%
AATGTTGTTGCTGCGATGGA+GGG - chr2.1:28800117-28800136 MS.gene040601:CDS 45.0%
AGATGAGAGAGTGAGGGATT+GGG + chr2.1:28799687-28799706 None:intergenic 45.0%
ATCAGTCTGTTCCGGATGTT+AGG - chr2.1:28800223-28800242 MS.gene040601:CDS 45.0%
ATTGGTCAAGGATGAGGGTT+CGG - chr2.1:28800770-28800789 MS.gene040601:CDS 45.0%
ATTGGTGAAATCGAGAGTGG+AGG - chr2.1:28800474-28800493 MS.gene040601:CDS 45.0%
CATTGAAGGGTTCTGCTAAG+AGG - chr2.1:28800565-28800584 MS.gene040601:CDS 45.0%
CTAACAACCCCCCATTTCTT+CGG + chr2.1:28800159-28800178 None:intergenic 45.0%
GAAGTCATCCGTGAAGGAAA+AGG - chr2.1:28800656-28800675 MS.gene040601:CDS 45.0%
GACTTGTAGTGTTGTGAAGG+TGG - chr2.1:28800059-28800078 MS.gene040601:CDS 45.0%
GAGATTGGTGAAATCGAGAG+TGG - chr2.1:28800471-28800490 MS.gene040601:CDS 45.0%
GATTGAGGGGGTTAAGGATT+TGG - chr2.1:28800251-28800270 MS.gene040601:CDS 45.0%
GTTGAAGATTGAGGGGGTTA+AGG - chr2.1:28800245-28800264 MS.gene040601:CDS 45.0%
TCCGGAACAGACTGATAAAC+CGG + chr2.1:28800219-28800238 None:intergenic 45.0%
TCGTCTTCGTCGAAGAGTTT+GGG + chr2.1:28799595-28799614 None:intergenic 45.0%
TGAGAATGTTGTTGCTGCGA+TGG - chr2.1:28800113-28800132 MS.gene040601:CDS 45.0%
TGGGACTTGTAGTGTTGTGA+AGG - chr2.1:28800056-28800075 MS.gene040601:CDS 45.0%
TTCGTCTTCGTCGAAGAGTT+TGG + chr2.1:28799596-28799615 None:intergenic 45.0%
TTGGAAGGAGCAGATTGAGA+AGG - chr2.1:28800002-28800021 MS.gene040601:CDS 45.0%
TTGGTGAAATCGAGAGTGGA+GGG - chr2.1:28800475-28800494 MS.gene040601:CDS 45.0%
! AACTTCCTTTTCGCCTCGAA+CGG + chr2.1:28799859-28799878 None:intergenic 45.0%
! AGAGTCTACGGCTTTTGCAA+CGG + chr2.1:28799533-28799552 None:intergenic 45.0%
! GAAGGTGGCTAAGTTGAGTA+TGG - chr2.1:28800074-28800093 MS.gene040601:CDS 45.0%
! GAGGGATTGGGATTTTGTGA+GGG + chr2.1:28799675-28799694 None:intergenic 45.0%
! GGTTAACGCGACCTTTTGAT+GGG + chr2.1:28799654-28799673 None:intergenic 45.0%
! GGTTTTACCGAAGAAATGGG+GGG - chr2.1:28800149-28800168 MS.gene040601:CDS 45.0%
! GTTGGTGAAGGATGAGAAGA+AGG - chr2.1:28800281-28800300 MS.gene040601:CDS 45.0%
! TCGTCTTTGGTGATACGAGA+GGG + chr2.1:28799757-28799776 None:intergenic 45.0%
! TGAGGGATTGGGATTTTGTG+AGG + chr2.1:28799676-28799695 None:intergenic 45.0%
! TTCGTCTTTGGTGATACGAG+AGG + chr2.1:28799758-28799777 None:intergenic 45.0%
!! GAGGGTTGGTGAATAAGAAG+AGG - chr2.1:28800493-28800512 MS.gene040601:CDS 45.0%
!! TGTTAGTGGTGGTGGTGATA+AGG - chr2.1:28800434-28800453 MS.gene040601:CDS 45.0%
CCCAATAACCTCGGCAACAA+CGG + chr2.1:28799925-28799944 None:intergenic 50.0%
CCGTTGTTGCCGAGGTTATT+GGG - chr2.1:28799922-28799941 MS.gene040601:CDS 50.0%
CGAAGAAATGGGGGGTTGTT+AGG - chr2.1:28800157-28800176 MS.gene040601:CDS 50.0%
CGTTGTTGCCGAGGTTATTG+GGG - chr2.1:28799923-28799942 MS.gene040601:CDS 50.0%
GAAGAATAACGAAAGGGGGG+TGG - chr2.1:28800689-28800708 MS.gene040601:CDS 50.0%
GAATGTTGTTGCTGCGATGG+AGG - chr2.1:28800116-28800135 MS.gene040601:CDS 50.0%
GAGAAAGACGGCAGATGTGA+AGG - chr2.1:28800803-28800822 MS.gene040601:CDS 50.0%
GAGATGAGAGAGTGAGGGAT+TGG + chr2.1:28799688-28799707 None:intergenic 50.0%
GTTGGAGTCTCTTGCTTTGC+CGG - chr2.1:28800197-28800216 MS.gene040601:CDS 50.0%
TGAAATCGAGAGTGGAGGGT+TGG - chr2.1:28800479-28800498 MS.gene040601:CDS 50.0%
TGAGGGGGTTAAGGATTTGG+AGG - chr2.1:28800254-28800273 MS.gene040601:CDS 50.0%
TTCTGCAAATCCACCTGCAC+CGG + chr2.1:28799976-28799995 None:intergenic 50.0%
! GCCGGTTTATCAGTCTGTTC+CGG - chr2.1:28800215-28800234 MS.gene040601:CDS 50.0%
! GGGTTAACGCGACCTTTTGA+TGG + chr2.1:28799655-28799674 None:intergenic 50.0%
! TACGGCTTTTGCAACGGTGT+CGG + chr2.1:28799527-28799546 None:intergenic 50.0%
ATCGTCCGTTCGAGGCGAAA+AGG - chr2.1:28799851-28799870 MS.gene040601:CDS 55.0%
CTGCGGAGATGAGAGAGTGA+GGG + chr2.1:28799693-28799712 None:intergenic 55.0%
GAAGAGGAAGATTCCGGTGC+AGG - chr2.1:28799960-28799979 MS.gene040601:CDS 55.0%
GAGACACTGTTCGGAAGCTG+CGG + chr2.1:28799710-28799729 None:intergenic 55.0%
GCCGTTGTTGCCGAGGTTAT+TGG - chr2.1:28799921-28799940 MS.gene040601:CDS 55.0%
! CTATTGTGCCGTTGTTGCCG+AGG - chr2.1:28799914-28799933 MS.gene040601:CDS 55.0%
!! GACGGATTATCGTCCGTTCG+AGG - chr2.1:28799843-28799862 MS.gene040601:CDS 55.0%
GAGGAAGATTCCGGTGCAGG+TGG - chr2.1:28799963-28799982 MS.gene040601:CDS 60.0%
GCTGCGGAGATGAGAGAGTG+AGG + chr2.1:28799694-28799713 None:intergenic 60.0%
!! GGTGTCGGCGTTGCTGGTTA+CGG + chr2.1:28799512-28799531 None:intergenic 60.0%
!! TGCGATGGAGGGTGTTGTCG+AGG - chr2.1:28800128-28800147 MS.gene040601:CDS 60.0%
CGAAAGGGGGGTGGCTGAGT+TGG - chr2.1:28800698-28800717 MS.gene040601:CDS 65.0%
! GTCGGCGTTGCTGGTTACGG+TGG + chr2.1:28799509-28799528 None:intergenic 65.0%
!! TGCAACGGTGTCGGCGTTGC+TGG + chr2.1:28799518-28799537 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 28799502 28800857 28799502 ID=MS.gene040601
chr2.1 mRNA 28799502 28800857 28799502 ID=MS.gene040601.t1;Parent=MS.gene040601
chr2.1 exon 28799502 28800857 28799502 ID=MS.gene040601.t1.exon1;Parent=MS.gene040601.t1
chr2.1 CDS 28799502 28800857 28799502 ID=cds.MS.gene040601.t1;Parent=MS.gene040601.t1
Gene Sequence

>MS.gene040601

ATGGCCACCGTAACCAGCAACGCCGACACCGTTGCAAAAGCCGTAGACTCTCTTCTTAAATGGCGCAAATCACGATTAGAAACCGAAAAACCCAAACTCTTCGACGAAGACGAAGAATTTGTTTACCTCATCCTAACCCTAAAGAAAATCCCATCAAAAGGTCGCGTTAACCCTCACAAAATCCCAATCCCTCACTCTCTCATCTCCGCAGCTTCCGAACAGTGTCTCATCATTGATGACAGAGCTAACAAACCCTCTCGTATCACCAAAGACGAAGCTCAGAAGAAAGTTCAATCGGAATCGATTCCTATTTCGAAGATTCTGAAGCTTTCGAAGCTTATGACGGATTATCGTCCGTTCGAGGCGAAAAGGAAGTTATGTAATTCTTATGATTTGTTTTTTGCTGATAAAGCTATTGTGCCGTTGTTGCCGAGGTTATTGGGGAAGCAGTTTTTTAAGAAGAGGAAGATTCCGGTGCAGGTGGATTTGCAGAAGAAGAATTGGAAGGAGCAGATTGAGAAGGCTTGTTCTTCTGCTTTGTTGTTTTTGAGGACTGGGACTTGTAGTGTTGTGAAGGTGGCTAAGTTGAGTATGGAGAGAGATGAGATTGTTGAGAATGTTGTTGCTGCGATGGAGGGTGTTGTCGAGGTTTTACCGAAGAAATGGGGGGTTGTTAGGTCTTTTCATGTTAAGTTGTTGGAGTCTCTTGCTTTGCCGGTTTATCAGTCTGTTCCGGATGTTAGGTTGAAGATTGAGGGGGTTAAGGATTTGGAGGATAAGTTGGTGAAGGATGAGAAGAAGGTGAAAGACGCAAAGAAGAGTAAGAAGAAAGGGAGGATTCATGAGATTAAGTATATGGATGATAGAATGAGTTCAGATGGTGATGATCGCAGTGTTGATATTGATCTTGATGATGATATCGATGATGATTTTGTTAGTGGTGGTGGTGATAAGGTTGATGATGATAGTGAGATTGGTGAAATCGAGAGTGGAGGGTTGGTGAATAAGAAGAGGAAGAAAGGAGTGAAAAAAGAGGATTTGAGTGAGTTGGGAAGTGTGAAATCATTGAAGGGTTCTGCTAAGAGGAAGAAGAAAGATGGGTTGAATGTGAATGCTGCAGAAGAAGGTTCAATTGAGAAGAGTGAAAAGAATAAGAAGTCATCCGTGAAGGAAAAGGGTTCAAAGAAGAAGAATAACGAAAGGGGGGTGGCTGAGTTGGATGTGAAACATGCTCTTGAAGAAGTGCTCATGTTTAGCGGAAATAAATCATTGGTCAAGGATGAGGGTTCGGACAAGAAGAAGAGAAAGACGGCAGATGTGAAGGTCAAGAGTAAGAAAAGTAAGAAGGCTGTATGA
Protein sequence

>MS.gene040601.t1

MATVTSNADTVAKAVDSLLKWRKSRLETEKPKLFDEDEEFVYLILTLKKIPSKGRVNPHKIPIPHSLISAASEQCLIIDDRANKPSRITKDEAQKKVQSESIPISKILKLSKLMTDYRPFEAKRKLCNSYDLFFADKAIVPLLPRLLGKQFFKKRKIPVQVDLQKKNWKEQIEKACSSALLFLRTGTCSVVKVAKLSMERDEIVENVVAAMEGVVEVLPKKWGVVRSFHVKLLESLALPVYQSVPDVRLKIEGVKDLEDKLVKDEKKVKDAKKSKKKGRIHEIKYMDDRMSSDGDDRSVDIDLDDDIDDDFVSGGGDKVDDDSEIGEIESGGLVNKKRKKGVKKEDLSELGSVKSLKGSAKRKKKDGLNVNAAEEGSIEKSEKNKKSSVKEKGSKKKNNERGVAELDVKHALEEVLMFSGNKSLVKDEGSDKKKRKTADVKVKSKKSKKAV