Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017623.t1 | XP_013446346.2 | 87.2 | 288 | 37 | 0 | 1 | 288 | 1 | 288 | 9.30E-96 | 360.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017623.t1 | Q9LUJ5 | 61.8 | 207 | 78 | 1 | 35 | 240 | 41 | 247 | 8.1e-40 | 165.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017623.t1 | A0A396GLQ3 | 87.2 | 288 | 37 | 0 | 1 | 288 | 1 | 288 | 6.7e-96 | 360.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017623.t1 | MTR_5g028350 | 85.813 | 289 | 38 | 2 | 1 | 286 | 1 | 289 | 1.60e-170 | 473 |
MS.gene017623.t1 | MTR_8g075400 | 86.760 | 287 | 11 | 2 | 1 | 287 | 14 | 273 | 1.07e-163 | 456 |
MS.gene017623.t1 | MTR_8g075400 | 97.748 | 222 | 5 | 0 | 1 | 222 | 1 | 222 | 1.46e-158 | 442 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017623.t1 | AT3G22660 | 64.236 | 288 | 96 | 3 | 2 | 288 | 12 | 293 | 3.01e-125 | 359 |
Find 69 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGCCTCCAAAGCCAAATT+TGG | 0.135328 | 8.2:-29688057 | None:intergenic |
GCTGATACTACTAATGATTT+TGG | 0.192046 | 8.2:+29688104 | MS.gene017623:CDS |
GATGTTAAGAATTCCAAATT+TGG | 0.278385 | 8.2:+29688044 | MS.gene017623:CDS |
ATTATCTGAACCATCTAAAA+AGG | 0.298870 | 8.2:+29687416 | MS.gene017623:CDS |
AGAAAGGGCCAAGCAGAAAA+AGG | 0.337714 | 8.2:+29687818 | MS.gene017623:CDS |
TGTATCCATTCCACATTCTC+TGG | 0.362791 | 8.2:-29687489 | None:intergenic |
AATTCCAAATTTGGCTTTGG+AGG | 0.373337 | 8.2:+29688053 | MS.gene017623:CDS |
AAGAATTCCAAATTTGGCTT+TGG | 0.378859 | 8.2:+29688050 | MS.gene017623:CDS |
CTGAAGAGAGAAGAAAGGCC+AGG | 0.422247 | 8.2:+29687751 | MS.gene017623:CDS |
GAAAAGACCTGGAGTGTCTC+CGG | 0.423295 | 8.2:+29687959 | MS.gene017623:CDS |
AGATAATCTCTTGGCCTCCC+TGG | 0.430466 | 8.2:-29687769 | None:intergenic |
AGTCACAGAAATTAAAAGAA+AGG | 0.442695 | 8.2:+29687802 | MS.gene017623:CDS |
GTGTCTCCGGGTGACCGATC+AGG | 0.444973 | 8.2:+29687972 | MS.gene017623:CDS |
TAGTCTGCAGGCCTTAGAAA+AGG | 0.445288 | 8.2:-29687645 | None:intergenic |
CTTTGAGAAACTTCAGTCAA+TGG | 0.454306 | 8.2:+29687617 | MS.gene017623:CDS |
CGATGGCGCAGATAAGGCTT+TGG | 0.456534 | 8.2:+29687899 | MS.gene017623:CDS |
TGCAGACTATTATGCTGAAA+TGG | 0.457564 | 8.2:+29687659 | MS.gene017623:CDS |
CTGCTCTTGATCGATGTCAA+TGG | 0.460523 | 8.2:-29687520 | None:intergenic |
GTCACAGAAATTAAAAGAAA+GGG | 0.462057 | 8.2:+29687803 | MS.gene017623:CDS |
GGTAAGGCAAAGCAAGCCTT+TGG | 0.462245 | 8.2:+29687996 | MS.gene017623:CDS |
TGGCTTCTTTCCCTTTCCAA+AGG | 0.463981 | 8.2:-29688012 | None:intergenic |
TGCTGACGATGGCGCAGATA+AGG | 0.473187 | 8.2:+29687893 | MS.gene017623:CDS |
TTTGAGAAACTTCAGTCAAT+GGG | 0.475684 | 8.2:+29687618 | MS.gene017623:CDS |
ACATTGAATCTGTTAAGAAA+TGG | 0.479309 | 8.2:+29687844 | MS.gene017623:CDS |
GAGGAAGTAAGAAGAGAAAG+AGG | 0.489339 | 8.2:+29688153 | MS.gene017623:CDS |
GCAAAGCAAGCCTTTGGAAA+GGG | 0.492131 | 8.2:+29688002 | MS.gene017623:CDS |
AATGATGATACAATGGTTGA+TGG | 0.492459 | 8.2:+29687330 | MS.gene017623:CDS |
AACCTCTTTAGATAATCTCT+TGG | 0.505477 | 8.2:-29687778 | None:intergenic |
TTACCTCCTGATCGGTCACC+CGG | 0.505687 | 8.2:-29687978 | None:intergenic |
TTTGGCTTTGGAGGCAAGAA+GGG | 0.507591 | 8.2:+29688062 | MS.gene017623:CDS |
CATAAGCTGGCCAGAGAATG+TGG | 0.514747 | 8.2:+29687479 | MS.gene017623:CDS |
AGATAAGGCTTTGGACTTCG+AGG | 0.515894 | 8.2:+29687908 | MS.gene017623:CDS |
AGATTGAATGGAGCTGCCTC+TGG | 0.515931 | 8.2:+29687305 | None:intergenic |
GGCATTGGAGGGTACTAGAC+AGG | 0.518118 | 8.2:+29687593 | MS.gene017623:CDS |
TCTTCTGATTCTGATTCAGA+TGG | 0.519325 | 8.2:-29687384 | None:intergenic |
ATTTGGCTTTGGAGGCAAGA+AGG | 0.519353 | 8.2:+29688061 | MS.gene017623:CDS |
GCTTTGCCTTACCTCCTGAT+CGG | 0.526130 | 8.2:-29687986 | None:intergenic |
AGAGGCTGAAGAGAGAAGAA+AGG | 0.526636 | 8.2:+29687746 | MS.gene017623:CDS |
GATGCTCTATTAGATAAACT+TGG | 0.532375 | 8.2:+29687453 | MS.gene017623:CDS |
AAAAGACCTGGAGTGTCTCC+GGG | 0.535827 | 8.2:+29687960 | MS.gene017623:CDS |
ATTAGCAGAGAAGCAGAAGA+TGG | 0.537363 | 8.2:+29687722 | MS.gene017623:CDS |
AGTCTGCAGGCCTTAGAAAA+GGG | 0.538151 | 8.2:-29687644 | None:intergenic |
CGGTCAAAGAAGAAAAGACC+TGG | 0.554286 | 8.2:+29687948 | MS.gene017623:CDS |
ATTTCAGCATAATAGTCTGC+AGG | 0.562441 | 8.2:-29687657 | None:intergenic |
TGAAGAGAGAAGAAAGGCCA+GGG | 0.563172 | 8.2:+29687752 | MS.gene017623:CDS |
CATTGACATCGATCAAGAGC+AGG | 0.572289 | 8.2:+29687521 | MS.gene017623:CDS |
ATAAACTTGGAGACATAAGC+TGG | 0.573791 | 8.2:+29687466 | MS.gene017623:CDS |
GGGTGACCGATCAGGAGGTA+AGG | 0.574615 | 8.2:+29687980 | MS.gene017623:CDS |
CGGTCACCCGGAGACACTCC+AGG | 0.576723 | 8.2:-29687966 | None:intergenic |
GGCCAAGAGATTATCTAAAG+AGG | 0.579968 | 8.2:+29687776 | MS.gene017623:CDS |
GGCAAAGCAAGCCTTTGGAA+AGG | 0.581107 | 8.2:+29688001 | MS.gene017623:CDS |
AGAGAAGCAGAAGATGGTAG+AGG | 0.581371 | 8.2:+29687728 | MS.gene017623:CDS |
AGTAGATGTTAATGATGACT+TGG | 0.588825 | 8.2:+29687545 | MS.gene017623:CDS |
TTGAATCTGTTAAGAAATGG+AGG | 0.588933 | 8.2:+29687847 | MS.gene017623:CDS |
TTTGGACTTCGAGGACGGAA+AGG | 0.593158 | 8.2:+29687917 | MS.gene017623:CDS |
AGGAAGCAGAGGCAACAAAG+TGG | 0.602796 | 8.2:+29687867 | MS.gene017623:CDS |
AAGGCTTTGGACTTCGAGGA+CGG | 0.606211 | 8.2:+29687912 | MS.gene017623:CDS |
GGAAGCAGAGGCAACAAAGT+GGG | 0.615514 | 8.2:+29687868 | MS.gene017623:CDS |
CAAAGTGGGTTTGCTGACGA+TGG | 0.619387 | 8.2:+29687882 | MS.gene017623:CDS |
TTAAGAAATGGAGGAAGCAG+AGG | 0.621715 | 8.2:+29687856 | MS.gene017623:CDS |
CATTGACTGAAGTTTCTCAA+AGG | 0.625618 | 8.2:-29687616 | None:intergenic |
TCTCCGGGTGACCGATCAGG+AGG | 0.644315 | 8.2:+29687975 | MS.gene017623:CDS |
GCTGGCCAGAGAATGTGGAA+TGG | 0.647233 | 8.2:+29687484 | MS.gene017623:CDS |
AGAGAGAAGAAAGGCCAGGG+AGG | 0.661477 | 8.2:+29687755 | MS.gene017623:CDS |
TCTGGTTAATGATGATACAA+TGG | 0.663757 | 8.2:+29687323 | MS.gene017623:CDS |
ATTGTATCATCATTAACCAG+AGG | 0.690136 | 8.2:-29687321 | None:intergenic |
TGAAGCTGAGTATTTGAGTG+AGG | 0.691291 | 8.2:+29687353 | MS.gene017623:CDS |
AGGACGGAAAGGTGTTCGAG+CGG | 0.718016 | 8.2:+29687928 | MS.gene017623:CDS |
GGTGAAGACAGATAGCCACA+TGG | 0.738846 | 8.2:+29687680 | MS.gene017623:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | ACATTGAATCTGTTAAGAAA+TGG | + | chr8.2:29687844-29687863 | MS.gene017623:CDS | 25.0% |
! | AGTCACAGAAATTAAAAGAA+AGG | + | chr8.2:29687802-29687821 | MS.gene017623:CDS | 25.0% |
! | ATTATCTGAACCATCTAAAA+AGG | + | chr8.2:29687416-29687435 | MS.gene017623:CDS | 25.0% |
! | GATGTTAAGAATTCCAAATT+TGG | + | chr8.2:29688044-29688063 | MS.gene017623:CDS | 25.0% |
! | GTCACAGAAATTAAAAGAAA+GGG | + | chr8.2:29687803-29687822 | MS.gene017623:CDS | 25.0% |
!! | TTATTTACTGCCTTTTTAGA+TGG | - | chr8.2:29687429-29687448 | None:intergenic | 25.0% |
!! | TTCTTAACATCTCTTTTCTT+TGG | - | chr8.2:29688035-29688054 | None:intergenic | 25.0% |
AACCTCTTTAGATAATCTCT+TGG | - | chr8.2:29687781-29687800 | None:intergenic | 30.0% | |
AATGATGATACAATGGTTGA+TGG | + | chr8.2:29687330-29687349 | MS.gene017623:CDS | 30.0% | |
ACATGGAAAAAGTGAAAAGT+CGG | + | chr8.2:29687697-29687716 | MS.gene017623:CDS | 30.0% | |
AGTAGATGTTAATGATGACT+TGG | + | chr8.2:29687545-29687564 | MS.gene017623:CDS | 30.0% | |
ATTGTATCATCATTAACCAG+AGG | - | chr8.2:29687324-29687343 | None:intergenic | 30.0% | |
GATGCTCTATTAGATAAACT+TGG | + | chr8.2:29687453-29687472 | MS.gene017623:CDS | 30.0% | |
TCTGGTTAATGATGATACAA+TGG | + | chr8.2:29687323-29687342 | MS.gene017623:CDS | 30.0% | |
TTGAATCTGTTAAGAAATGG+AGG | + | chr8.2:29687847-29687866 | MS.gene017623:CDS | 30.0% | |
TTTGAGAAACTTCAGTCAAT+GGG | + | chr8.2:29687618-29687637 | MS.gene017623:CDS | 30.0% | |
! | AAGAATTCCAAATTTGGCTT+TGG | + | chr8.2:29688050-29688069 | MS.gene017623:CDS | 30.0% |
! | GATACTACTAATGATTTTGG+TGG | + | chr8.2:29688107-29688126 | MS.gene017623:CDS | 30.0% |
! | GCTGATACTACTAATGATTT+TGG | + | chr8.2:29688104-29688123 | MS.gene017623:CDS | 30.0% |
ATAAACTTGGAGACATAAGC+TGG | + | chr8.2:29687466-29687485 | MS.gene017623:CDS | 35.0% | |
ATTTCAGCATAATAGTCTGC+AGG | - | chr8.2:29687660-29687679 | None:intergenic | 35.0% | |
TCTTCTGATTCTGATTCAGA+TGG | - | chr8.2:29687387-29687406 | None:intergenic | 35.0% | |
TGCAGACTATTATGCTGAAA+TGG | + | chr8.2:29687659-29687678 | MS.gene017623:CDS | 35.0% | |
! | CATTGACTGAAGTTTCTCAA+AGG | - | chr8.2:29687619-29687638 | None:intergenic | 35.0% |
! | CTTTGAGAAACTTCAGTCAA+TGG | + | chr8.2:29687617-29687636 | MS.gene017623:CDS | 35.0% |
! | TTTGGTGGCTTCAGTAAAAA+GGG | + | chr8.2:29688122-29688141 | MS.gene017623:CDS | 35.0% |
!! | AATTCCAAATTTGGCTTTGG+AGG | + | chr8.2:29688053-29688072 | MS.gene017623:CDS | 35.0% |
!! | TTTTGGTGGCTTCAGTAAAA+AGG | + | chr8.2:29688121-29688140 | MS.gene017623:CDS | 35.0% |
!!! | GACTTTTCACTTTTTCCATG+TGG | - | chr8.2:29687698-29687717 | None:intergenic | 35.0% |
ATTAGCAGAGAAGCAGAAGA+TGG | + | chr8.2:29687722-29687741 | MS.gene017623:CDS | 40.0% | |
GAGGAAGTAAGAAGAGAAAG+AGG | + | chr8.2:29688153-29688172 | MS.gene017623:CDS | 40.0% | |
GGCCAAGAGATTATCTAAAG+AGG | + | chr8.2:29687776-29687795 | MS.gene017623:CDS | 40.0% | |
TGAAGCTGAGTATTTGAGTG+AGG | + | chr8.2:29687353-29687372 | MS.gene017623:CDS | 40.0% | |
TGTATCCATTCCACATTCTC+TGG | - | chr8.2:29687492-29687511 | None:intergenic | 40.0% | |
TTAAGAAATGGAGGAAGCAG+AGG | + | chr8.2:29687856-29687875 | MS.gene017623:CDS | 40.0% | |
! | AATGTCGTCCTTTTTCTGCT+TGG | - | chr8.2:29687829-29687848 | None:intergenic | 40.0% |
! | AGAGCTTGCATTTTACACTC+AGG | + | chr8.2:29687572-29687591 | MS.gene017623:CDS | 40.0% |
! | TGCATTTTACACTCAGGCAT+TGG | + | chr8.2:29687578-29687597 | MS.gene017623:CDS | 40.0% |
!! | TTCAGTAAAAAGGGTGCTGT+TGG | + | chr8.2:29688131-29688150 | MS.gene017623:CDS | 40.0% |
!!! | ATTTTACACTCAGGCATTGG+AGG | + | chr8.2:29687581-29687600 | MS.gene017623:CDS | 40.0% |
!!! | TTTTACACTCAGGCATTGGA+GGG | + | chr8.2:29687582-29687601 | MS.gene017623:CDS | 40.0% |
AGAAAGGGCCAAGCAGAAAA+AGG | + | chr8.2:29687818-29687837 | MS.gene017623:CDS | 45.0% | |
AGAGAAGCAGAAGATGGTAG+AGG | + | chr8.2:29687728-29687747 | MS.gene017623:CDS | 45.0% | |
AGAGGCTGAAGAGAGAAGAA+AGG | + | chr8.2:29687746-29687765 | MS.gene017623:CDS | 45.0% | |
AGTCTGCAGGCCTTAGAAAA+GGG | - | chr8.2:29687647-29687666 | None:intergenic | 45.0% | |
CATTGACATCGATCAAGAGC+AGG | + | chr8.2:29687521-29687540 | MS.gene017623:CDS | 45.0% | |
CGGTCAAAGAAGAAAAGACC+TGG | + | chr8.2:29687948-29687967 | MS.gene017623:CDS | 45.0% | |
CTGCTCTTGATCGATGTCAA+TGG | - | chr8.2:29687523-29687542 | None:intergenic | 45.0% | |
CTTGCCTCCAAAGCCAAATT+TGG | - | chr8.2:29688060-29688079 | None:intergenic | 45.0% | |
TAGTCTGCAGGCCTTAGAAA+AGG | - | chr8.2:29687648-29687667 | None:intergenic | 45.0% | |
TGAAGAGAGAAGAAAGGCCA+GGG | + | chr8.2:29687752-29687771 | MS.gene017623:CDS | 45.0% | |
TGGCTTCTTTCCCTTTCCAA+AGG | - | chr8.2:29688015-29688034 | None:intergenic | 45.0% | |
! | CAATGGGTCTCCCTTTTCTA+AGG | + | chr8.2:29687634-29687653 | MS.gene017623:CDS | 45.0% |
! | GCAAAGCAAGCCTTTGGAAA+GGG | + | chr8.2:29688002-29688021 | MS.gene017623:CDS | 45.0% |
!! | AGATAAGGCTTTGGACTTCG+AGG | + | chr8.2:29687908-29687927 | MS.gene017623:CDS | 45.0% |
!! | AGTAAAAAGGGTGCTGTTGG+AGG | + | chr8.2:29688134-29688153 | MS.gene017623:CDS | 45.0% |
!! | ATTTGGCTTTGGAGGCAAGA+AGG | + | chr8.2:29688061-29688080 | MS.gene017623:CDS | 45.0% |
!! | TTTGGCTTTGGAGGCAAGAA+GGG | + | chr8.2:29688062-29688081 | MS.gene017623:CDS | 45.0% |
AGATAATCTCTTGGCCTCCC+TGG | - | chr8.2:29687772-29687791 | None:intergenic | 50.0% | |
AGGAAGCAGAGGCAACAAAG+TGG | + | chr8.2:29687867-29687886 | MS.gene017623:CDS | 50.0% | |
CATAAGCTGGCCAGAGAATG+TGG | + | chr8.2:29687479-29687498 | MS.gene017623:CDS | 50.0% | |
CTGAAGAGAGAAGAAAGGCC+AGG | + | chr8.2:29687751-29687770 | MS.gene017623:CDS | 50.0% | |
GCTTTGCCTTACCTCCTGAT+CGG | - | chr8.2:29687989-29688008 | None:intergenic | 50.0% | |
GGAAGCAGAGGCAACAAAGT+GGG | + | chr8.2:29687868-29687887 | MS.gene017623:CDS | 50.0% | |
GGTAAGGCAAAGCAAGCCTT+TGG | + | chr8.2:29687996-29688015 | MS.gene017623:CDS | 50.0% | |
GGTGAAGACAGATAGCCACA+TGG | + | chr8.2:29687680-29687699 | MS.gene017623:CDS | 50.0% | |
TTTGGACTTCGAGGACGGAA+AGG | + | chr8.2:29687917-29687936 | MS.gene017623:CDS | 50.0% | |
! | AAAAGACCTGGAGTGTCTCC+GGG | + | chr8.2:29687960-29687979 | MS.gene017623:CDS | 50.0% |
! | GAAAAGACCTGGAGTGTCTC+CGG | + | chr8.2:29687959-29687978 | MS.gene017623:CDS | 50.0% |
! | GGCAAAGCAAGCCTTTGGAA+AGG | + | chr8.2:29688001-29688020 | MS.gene017623:CDS | 50.0% |
!! | AAGGCTTTGGACTTCGAGGA+CGG | + | chr8.2:29687912-29687931 | MS.gene017623:CDS | 50.0% |
!! | CAAAGTGGGTTTGCTGACGA+TGG | + | chr8.2:29687882-29687901 | MS.gene017623:CDS | 50.0% |
AGAGAGAAGAAAGGCCAGGG+AGG | + | chr8.2:29687755-29687774 | MS.gene017623:CDS | 55.0% | |
CGATGGCGCAGATAAGGCTT+TGG | + | chr8.2:29687899-29687918 | MS.gene017623:CDS | 55.0% | |
GCTGGCCAGAGAATGTGGAA+TGG | + | chr8.2:29687484-29687503 | MS.gene017623:CDS | 55.0% | |
TGCTGACGATGGCGCAGATA+AGG | + | chr8.2:29687893-29687912 | MS.gene017623:CDS | 55.0% | |
TTACCTCCTGATCGGTCACC+CGG | - | chr8.2:29687981-29688000 | None:intergenic | 55.0% | |
!! | AGGACGGAAAGGTGTTCGAG+CGG | + | chr8.2:29687928-29687947 | MS.gene017623:CDS | 55.0% |
!! | GGCATTGGAGGGTACTAGAC+AGG | + | chr8.2:29687593-29687612 | MS.gene017623:CDS | 55.0% |
GGGTGACCGATCAGGAGGTA+AGG | + | chr8.2:29687980-29687999 | MS.gene017623:CDS | 60.0% | |
GTGTCTCCGGGTGACCGATC+AGG | + | chr8.2:29687972-29687991 | MS.gene017623:CDS | 65.0% | |
TCTCCGGGTGACCGATCAGG+AGG | + | chr8.2:29687975-29687994 | MS.gene017623:CDS | 65.0% | |
CGGTCACCCGGAGACACTCC+AGG | - | chr8.2:29687969-29687988 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 29687312 | 29688178 | 29687312 | ID=MS.gene017623 |
chr8.2 | mRNA | 29687312 | 29688178 | 29687312 | ID=MS.gene017623.t1;Parent=MS.gene017623 |
chr8.2 | exon | 29687312 | 29688178 | 29687312 | ID=MS.gene017623.t1.exon1;Parent=MS.gene017623.t1 |
chr8.2 | CDS | 29687312 | 29688178 | 29687312 | ID=cds.MS.gene017623.t1;Parent=MS.gene017623.t1 |
Gene Sequence |
Protein sequence |