Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90649.t1 | XP_013464923.1 | 99.1 | 111 | 1 | 0 | 1 | 111 | 1 | 111 | 5.40E-52 | 213.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90649.t1 | Q9FK81 | 65.7 | 99 | 34 | 0 | 7 | 105 | 6 | 104 | 1.7e-30 | 133.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90649.t1 | B7FMZ0 | 99.1 | 111 | 1 | 0 | 1 | 111 | 1 | 111 | 3.9e-52 | 213.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene90649 | 0.831706 | 1.43E-55 | -1.69E-46 |
| MS.gene049159 | MS.gene90649 | 0.811758 | 5.97E-51 | -1.69E-46 |
| MS.gene049190 | MS.gene90649 | 0.80007 | 1.71E-48 | -1.69E-46 |
| MS.gene049255 | MS.gene90649 | 0.826147 | 3.18E-54 | -1.69E-46 |
| MS.gene049341 | MS.gene90649 | 0.849578 | 2.96E-60 | -1.69E-46 |
| MS.gene049350 | MS.gene90649 | 0.840227 | 9.87E-58 | -1.69E-46 |
| MS.gene049404 | MS.gene90649 | 0.810958 | 8.90E-51 | -1.69E-46 |
| MS.gene049501 | MS.gene90649 | 0.827649 | 1.39E-54 | -1.69E-46 |
| MS.gene049672 | MS.gene90649 | 0.808952 | 2.40E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene90649 | 0.809323 | 2.00E-50 | -1.69E-46 |
| MS.gene04976 | MS.gene90649 | 0.800121 | 1.67E-48 | -1.69E-46 |
| MS.gene049821 | MS.gene90649 | 0.834453 | 2.97E-56 | -1.69E-46 |
| MS.gene049850 | MS.gene90649 | 0.846031 | 2.80E-59 | -1.69E-46 |
| MS.gene049887 | MS.gene90649 | 0.824985 | 6.00E-54 | -1.69E-46 |
| MS.gene049979 | MS.gene90649 | 0.817959 | 2.52E-52 | -1.69E-46 |
| MS.gene050020 | MS.gene90649 | 0.875123 | 3.95E-68 | -1.69E-46 |
| MS.gene050137 | MS.gene90649 | 0.811014 | 8.65E-51 | -1.69E-46 |
| MS.gene05016 | MS.gene90649 | 0.829414 | 5.22E-55 | -1.69E-46 |
| MS.gene050253 | MS.gene90649 | 0.806409 | 8.34E-50 | -1.69E-46 |
| MS.gene050303 | MS.gene90649 | 0.801253 | 9.83E-49 | -1.69E-46 |
| MS.gene050437 | MS.gene90649 | 0.809321 | 2.00E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene90649 | 0.804072 | 2.57E-49 | -1.69E-46 |
| MS.gene05045 | MS.gene90649 | 0.815962 | 7.07E-52 | -1.69E-46 |
| MS.gene050584 | MS.gene90649 | 0.801415 | 9.10E-49 | -1.69E-46 |
| MS.gene050585 | MS.gene90649 | 0.816431 | 5.55E-52 | -1.69E-46 |
| MS.gene050586 | MS.gene90649 | 0.823717 | 1.19E-53 | -1.69E-46 |
| MS.gene050689 | MS.gene90649 | 0.817624 | 2.99E-52 | -1.69E-46 |
| MS.gene050719 | MS.gene90649 | 0.803274 | 3.77E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene90649 | 0.805354 | 1.39E-49 | -1.69E-46 |
| MS.gene050724 | MS.gene90649 | 0.801393 | 9.20E-49 | -1.69E-46 |
| MS.gene050780 | MS.gene90649 | 0.812141 | 4.92E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene90649 | 0.904214 | 1.55E-79 | -1.69E-46 |
| MS.gene050808 | MS.gene90649 | 0.867717 | 1.11E-65 | -1.69E-46 |
| MS.gene050815 | MS.gene90649 | 0.849701 | 2.73E-60 | -1.69E-46 |
| MS.gene050844 | MS.gene90649 | 0.817729 | 2.83E-52 | -1.69E-46 |
| MS.gene050901 | MS.gene90649 | 0.827488 | 1.52E-54 | -1.69E-46 |
| MS.gene050959 | MS.gene90649 | 0.813823 | 2.11E-51 | -1.69E-46 |
| MS.gene051102 | MS.gene90649 | 0.814315 | 1.64E-51 | -1.69E-46 |
| MS.gene051180 | MS.gene90649 | 0.824294 | 8.73E-54 | -1.69E-46 |
| MS.gene051247 | MS.gene90649 | 0.855041 | 8.23E-62 | -1.69E-46 |
| MS.gene051265 | MS.gene90649 | 0.814864 | 1.24E-51 | -1.69E-46 |
| MS.gene051328 | MS.gene90649 | 0.839865 | 1.23E-57 | -1.69E-46 |
| MS.gene05134 | MS.gene90649 | 0.828977 | 6.66E-55 | -1.69E-46 |
| MS.gene051388 | MS.gene90649 | 0.810111 | 1.36E-50 | -1.69E-46 |
| MS.gene05157 | MS.gene90649 | 0.857108 | 2.04E-62 | -1.69E-46 |
| MS.gene051700 | MS.gene90649 | 0.819259 | 1.28E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene90649 | 0.875894 | 2.15E-68 | -1.69E-46 |
| MS.gene051720 | MS.gene90649 | 0.870095 | 1.89E-66 | -1.69E-46 |
| MS.gene051744 | MS.gene90649 | 0.833364 | 5.57E-56 | -1.69E-46 |
| MS.gene051789 | MS.gene90649 | 0.845182 | 4.76E-59 | -1.69E-46 |
| MS.gene052000 | MS.gene90649 | 0.804791 | 1.82E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene90649 | 0.835963 | 1.24E-56 | -1.69E-46 |
| MS.gene052133 | MS.gene90649 | 0.854155 | 1.49E-61 | -1.69E-46 |
| MS.gene052323 | MS.gene90649 | 0.822305 | 2.54E-53 | -1.69E-46 |
| MS.gene052376 | MS.gene90649 | 0.802068 | 6.69E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene90649 | 0.861368 | 1.08E-63 | -1.69E-46 |
| MS.gene052611 | MS.gene90649 | 0.851378 | 9.23E-61 | -1.69E-46 |
| MS.gene052612 | MS.gene90649 | 0.80737 | 5.23E-50 | -1.69E-46 |
| MS.gene052613 | MS.gene90649 | 0.805969 | 1.03E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene90649 | 0.880749 | 4.25E-70 | -1.69E-46 |
| MS.gene052698 | MS.gene90649 | 0.8005 | 1.40E-48 | -1.69E-46 |
| MS.gene052732 | MS.gene90649 | 0.819498 | 1.13E-52 | -1.69E-46 |
| MS.gene052773 | MS.gene90649 | 0.815884 | 7.35E-52 | -1.69E-46 |
| MS.gene052860 | MS.gene90649 | 0.807226 | 5.61E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene90649 | 0.842905 | 1.94E-58 | -1.69E-46 |
| MS.gene052879 | MS.gene90649 | 0.824943 | 6.14E-54 | -1.69E-46 |
| MS.gene052880 | MS.gene90649 | 0.812704 | 3.71E-51 | -1.69E-46 |
| MS.gene052896 | MS.gene90649 | 0.852482 | 4.48E-61 | -1.69E-46 |
| MS.gene052947 | MS.gene90649 | 0.816101 | 6.58E-52 | -1.69E-46 |
| MS.gene053008 | MS.gene90649 | 0.817192 | 3.75E-52 | -1.69E-46 |
| MS.gene053074 | MS.gene90649 | 0.842231 | 2.93E-58 | -1.69E-46 |
| MS.gene053144 | MS.gene90649 | 0.850393 | 1.75E-60 | -1.69E-46 |
| MS.gene053174 | MS.gene90649 | 0.828382 | 9.27E-55 | -1.69E-46 |
| MS.gene053226 | MS.gene90649 | 0.832718 | 8.05E-56 | -1.69E-46 |
| MS.gene053383 | MS.gene90649 | 0.802518 | 5.40E-49 | -1.69E-46 |
| MS.gene053563 | MS.gene90649 | 0.855262 | 7.10E-62 | -1.69E-46 |
| MS.gene053581 | MS.gene90649 | 0.872103 | 4.11E-67 | -1.69E-46 |
| MS.gene053599 | MS.gene90649 | 0.817482 | 3.22E-52 | -1.69E-46 |
| MS.gene05364 | MS.gene90649 | 0.817983 | 2.48E-52 | -1.69E-46 |
| MS.gene054472 | MS.gene90649 | 0.832548 | 8.88E-56 | -1.69E-46 |
| MS.gene054550 | MS.gene90649 | 0.835679 | 1.46E-56 | -1.69E-46 |
| MS.gene05456 | MS.gene90649 | 0.821888 | 3.18E-53 | -1.69E-46 |
| MS.gene054584 | MS.gene90649 | 0.84754 | 1.08E-59 | -1.69E-46 |
| MS.gene05462 | MS.gene90649 | 0.831957 | 1.24E-55 | -1.69E-46 |
| MS.gene05468 | MS.gene90649 | 0.817055 | 4.02E-52 | -1.69E-46 |
| MS.gene055144 | MS.gene90649 | 0.82885 | 7.15E-55 | -1.69E-46 |
| MS.gene055162 | MS.gene90649 | 0.813885 | 2.04E-51 | -1.69E-46 |
| MS.gene055357 | MS.gene90649 | 0.813767 | 2.17E-51 | -1.69E-46 |
| MS.gene055359 | MS.gene90649 | 0.806492 | 8.01E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene90649 | 0.875521 | 2.89E-68 | -1.69E-46 |
| MS.gene055466 | MS.gene90649 | 0.892417 | 1.62E-74 | -1.69E-46 |
| MS.gene055468 | MS.gene90649 | 0.872715 | 2.57E-67 | -1.69E-46 |
| MS.gene055469 | MS.gene90649 | 0.835467 | 1.65E-56 | -1.69E-46 |
| MS.gene055512 | MS.gene90649 | 0.858188 | 9.78E-63 | -1.69E-46 |
| MS.gene055537 | MS.gene90649 | 0.825591 | 4.31E-54 | -1.69E-46 |
| MS.gene055580 | MS.gene90649 | -0.847925 | 8.49E-60 | -1.69E-46 |
| MS.gene055608 | MS.gene90649 | 0.818992 | 1.47E-52 | -1.69E-46 |
| MS.gene055623 | MS.gene90649 | 0.814463 | 1.52E-51 | -1.69E-46 |
| MS.gene055778 | MS.gene90649 | 0.801175 | 1.02E-48 | -1.69E-46 |
| MS.gene055818 | MS.gene90649 | 0.844466 | 7.43E-59 | -1.69E-46 |
| MS.gene055890 | MS.gene90649 | 0.834509 | 2.88E-56 | -1.69E-46 |
| MS.gene055891 | MS.gene90649 | 0.82608 | 3.30E-54 | -1.69E-46 |
| MS.gene056005 | MS.gene90649 | 0.865201 | 7.01E-65 | -1.69E-46 |
| MS.gene056043 | MS.gene90649 | -0.834628 | 2.69E-56 | -1.69E-46 |
| MS.gene05604 | MS.gene90649 | 0.833026 | 6.75E-56 | -1.69E-46 |
| MS.gene056069 | MS.gene90649 | -0.819497 | 1.13E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene90649 | 0.835451 | 1.67E-56 | -1.69E-46 |
| MS.gene056366 | MS.gene90649 | 0.834035 | 3.78E-56 | -1.69E-46 |
| MS.gene056432 | MS.gene90649 | 0.8084 | 3.16E-50 | -1.69E-46 |
| MS.gene056542 | MS.gene90649 | 0.823532 | 1.32E-53 | -1.69E-46 |
| MS.gene056543 | MS.gene90649 | 0.834264 | 3.31E-56 | -1.69E-46 |
| MS.gene056545 | MS.gene90649 | 0.833128 | 6.37E-56 | -1.69E-46 |
| MS.gene056553 | MS.gene90649 | 0.863467 | 2.44E-64 | -1.69E-46 |
| MS.gene056584 | MS.gene90649 | 0.803301 | 3.72E-49 | -1.69E-46 |
| MS.gene056589 | MS.gene90649 | 0.806605 | 7.58E-50 | -1.69E-46 |
| MS.gene056595 | MS.gene90649 | 0.827032 | 1.96E-54 | -1.69E-46 |
| MS.gene056631 | MS.gene90649 | 0.803278 | 3.76E-49 | -1.69E-46 |
| MS.gene056643 | MS.gene90649 | 0.811598 | 6.46E-51 | -1.69E-46 |
| MS.gene056760 | MS.gene90649 | 0.848038 | 7.91E-60 | -1.69E-46 |
| MS.gene056859 | MS.gene90649 | 0.808577 | 2.89E-50 | -1.69E-46 |
| MS.gene057057 | MS.gene90649 | 0.814528 | 1.47E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene90649 | 0.830434 | 2.94E-55 | -1.69E-46 |
| MS.gene057444 | MS.gene90649 | 0.810304 | 1.23E-50 | -1.69E-46 |
| MS.gene057446 | MS.gene90649 | 0.808382 | 3.18E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene90649 | 0.81923 | 1.30E-52 | -1.69E-46 |
| MS.gene057705 | MS.gene90649 | 0.81462 | 1.40E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene90649 | 0.835035 | 2.12E-56 | -1.69E-46 |
| MS.gene058168 | MS.gene90649 | 0.844279 | 8.34E-59 | -1.69E-46 |
| MS.gene058216 | MS.gene90649 | 0.809024 | 2.32E-50 | -1.69E-46 |
| MS.gene058339 | MS.gene90649 | 0.81932 | 1.24E-52 | -1.69E-46 |
| MS.gene05847 | MS.gene90649 | 0.836697 | 8.04E-57 | -1.69E-46 |
| MS.gene058625 | MS.gene90649 | 0.842087 | 3.20E-58 | -1.69E-46 |
| MS.gene058636 | MS.gene90649 | 0.813897 | 2.03E-51 | -1.69E-46 |
| MS.gene058852 | MS.gene90649 | 0.833916 | 4.05E-56 | -1.69E-46 |
| MS.gene058906 | MS.gene90649 | 0.836611 | 8.46E-57 | -1.69E-46 |
| MS.gene058945 | MS.gene90649 | 0.815698 | 8.09E-52 | -1.69E-46 |
| MS.gene059006 | MS.gene90649 | 0.837075 | 6.44E-57 | -1.69E-46 |
| MS.gene059015 | MS.gene90649 | 0.800876 | 1.17E-48 | -1.69E-46 |
| MS.gene059171 | MS.gene90649 | 0.814178 | 1.76E-51 | -1.69E-46 |
| MS.gene059713 | MS.gene90649 | 0.812467 | 4.18E-51 | -1.69E-46 |
| MS.gene059725 | MS.gene90649 | 0.828004 | 1.14E-54 | -1.69E-46 |
| MS.gene05978 | MS.gene90649 | 0.825368 | 4.87E-54 | -1.69E-46 |
| MS.gene059842 | MS.gene90649 | 0.820778 | 5.73E-53 | -1.69E-46 |
| MS.gene059937 | MS.gene90649 | 0.858078 | 1.05E-62 | -1.69E-46 |
| MS.gene06001 | MS.gene90649 | 0.822205 | 2.68E-53 | -1.69E-46 |
| MS.gene060194 | MS.gene90649 | 0.800902 | 1.16E-48 | -1.69E-46 |
| MS.gene060312 | MS.gene90649 | 0.801502 | 8.74E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene90649 | 0.833838 | 4.24E-56 | -1.69E-46 |
| MS.gene060429 | MS.gene90649 | 0.841216 | 5.44E-58 | -1.69E-46 |
| MS.gene060519 | MS.gene90649 | 0.831655 | 1.48E-55 | -1.69E-46 |
| MS.gene060587 | MS.gene90649 | 0.857785 | 1.29E-62 | -1.69E-46 |
| MS.gene060803 | MS.gene90649 | 0.82653 | 2.58E-54 | -1.69E-46 |
| MS.gene061176 | MS.gene90649 | 0.835449 | 1.67E-56 | -1.69E-46 |
| MS.gene061177 | MS.gene90649 | 0.835194 | 1.93E-56 | -1.69E-46 |
| MS.gene061178 | MS.gene90649 | 0.83497 | 2.20E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene012190 | MS.gene90649 | PPI |
| MS.gene24782 | MS.gene90649 | PPI |
| MS.gene25266 | MS.gene90649 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90649.t1 | MTR_2g084985 | 99.099 | 111 | 1 | 0 | 1 | 111 | 1 | 111 | 6.00e-75 | 217 |
| MS.gene90649.t1 | MTR_4g124920 | 41.584 | 101 | 55 | 2 | 8 | 105 | 4 | 103 | 1.40e-21 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90649.t1 | AT5G22580 | 65.657 | 99 | 34 | 0 | 7 | 105 | 6 | 104 | 5.30e-42 | 134 |
| MS.gene90649.t1 | AT3G17210 | 42.000 | 100 | 54 | 2 | 8 | 104 | 9 | 107 | 3.39e-22 | 84.0 |
| MS.gene90649.t1 | AT3G17210 | 42.000 | 100 | 54 | 2 | 8 | 104 | 9 | 107 | 3.39e-22 | 84.0 |
Find 22 sgRNAs with CRISPR-Local
Find 53 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTATGCTGCTTCCTTGAC+TGG | 0.289662 | 2.3:-12875089 | None:intergenic |
| TACAAAAGGGATGGAGAAAT+TGG | 0.322091 | 2.3:+12874200 | MS.gene90649:CDS |
| CTTCCTTGACTGGCTTGACA+AGG | 0.415501 | 2.3:-12875079 | None:intergenic |
| ATCTTGTCAAATCCTTTGAA+TGG | 0.422994 | 2.3:+12874235 | MS.gene90649:CDS |
| ACTGGCTTGACAAGGGTTGA+AGG | 0.449844 | 2.3:-12875071 | None:intergenic |
| CTTGTTGAATGTCATCAAGA+AGG | 0.457412 | 2.3:-12874952 | None:intergenic |
| GTGATTGTTAAGTTCAAAGA+AGG | 0.458164 | 2.3:+12874159 | MS.gene90649:CDS |
| GTAGTGGAAGAGCTTACAAA+AGG | 0.480357 | 2.3:+12874186 | MS.gene90649:CDS |
| GTTCAAAGAAGGTGTAGTAG+TGG | 0.481023 | 2.3:+12874170 | MS.gene90649:CDS |
| TCAGAGAACTCAACATGACT+TGG | 0.494285 | 2.3:-12875005 | None:intergenic |
| AACCTTGTCTCAACACATCT+AGG | 0.520013 | 2.3:-12874920 | None:intergenic |
| CTGGCTTGACAAGGGTTGAA+GGG | 0.536665 | 2.3:-12875070 | None:intergenic |
| TTCCTTGACTGGCTTGACAA+GGG | 0.547981 | 2.3:-12875078 | None:intergenic |
| AGAACTCAACATGACTTGGA+TGG | 0.554383 | 2.3:-12875001 | None:intergenic |
| GTATGTCTTATACAGGGGAC+AGG | 0.555403 | 2.3:+12874887 | MS.gene90649:intron |
| TTCACAAAGAATGGTAGTCA+TGG | 0.559784 | 2.3:+12874119 | None:intergenic |
| GGATAAAACATACCATTCAA+AGG | 0.573224 | 2.3:-12874247 | None:intergenic |
| AGCCTAGATGTGTTGAGACA+AGG | 0.579475 | 2.3:+12874918 | MS.gene90649:CDS |
| AACCCTTGTCAAGCCAGTCA+AGG | 0.583977 | 2.3:+12875076 | MS.gene90649:CDS |
| TAGTGGAAGAGCTTACAAAA+GGG | 0.588758 | 2.3:+12874187 | MS.gene90649:CDS |
| GGAAGAGCTTACAAAAGGGA+TGG | 0.589362 | 2.3:+12874191 | MS.gene90649:CDS |
| ACAAAGAATGGTAGTCATGG+AGG | 0.636423 | 2.3:+12874122 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACTATCAGTATCTATA+AGG | - | chr2.3:12874365-12874384 | None:intergenic | 20.0% |
| !! | AACAAAGACAGTAATTTAAA+GGG | + | chr2.3:12874448-12874467 | MS.gene90649:intron | 20.0% |
| !! | ACTGAGATTTATAGTTAAAT+AGG | + | chr2.3:12874564-12874583 | MS.gene90649:intron | 20.0% |
| !! | ATGTGATGATTATGATTATT+TGG | + | chr2.3:12874800-12874819 | MS.gene90649:intron | 20.0% |
| !! | TGCATAATATAAAAGGTAAA+TGG | - | chr2.3:12874271-12874290 | None:intergenic | 20.0% |
| !!! | ACATCAAAAACTTTGATTTT+GGG | + | chr2.3:12874618-12874637 | MS.gene90649:intron | 20.0% |
| ! | AACAGAAACAGAAATAACAA+GGG | + | chr2.3:12874415-12874434 | MS.gene90649:intron | 25.0% |
| ! | AATCAAGTATGTCTTATACA+GGG | + | chr2.3:12874881-12874900 | MS.gene90649:intron | 25.0% |
| ! | ATGATATGATAGTACTAAGT+AGG | - | chr2.3:12874852-12874871 | None:intergenic | 25.0% |
| ! | CTATAAGGTTAATAAACTGA+AGG | - | chr2.3:12874350-12874369 | None:intergenic | 25.0% |
| ! | GAACAAAGACAGTAATTTAA+AGG | + | chr2.3:12874447-12874466 | MS.gene90649:intron | 25.0% |
| ! | TAACAGAAACAGAAATAACA+AGG | + | chr2.3:12874414-12874433 | MS.gene90649:intron | 25.0% |
| ! | TAATCAAGTATGTCTTATAC+AGG | + | chr2.3:12874880-12874899 | MS.gene90649:intron | 25.0% |
| ! | TGATATGATAGTACTAAGTA+GGG | - | chr2.3:12874851-12874870 | None:intergenic | 25.0% |
| !! | TACCTTTTATATTATGCAAG+AGG | + | chr2.3:12874273-12874292 | MS.gene90649:intron | 25.0% |
| !!! | AATATCAAGGTTTTAGATTG+AGG | + | chr2.3:12874516-12874535 | MS.gene90649:intron | 25.0% |
| !!! | GACATCAAAAACTTTGATTT+TGG | + | chr2.3:12874617-12874636 | MS.gene90649:intron | 25.0% |
| ATCAAGTATGTCTTATACAG+GGG | + | chr2.3:12874882-12874901 | MS.gene90649:intron | 30.0% | |
| ATCTTGTCAAATCCTTTGAA+TGG | + | chr2.3:12874235-12874254 | MS.gene90649:CDS | 30.0% | |
| GGATAAAACATACCATTCAA+AGG | - | chr2.3:12874250-12874269 | None:intergenic | 30.0% | |
| GTGATTGTTAAGTTCAAAGA+AGG | + | chr2.3:12874159-12874178 | MS.gene90649:CDS | 30.0% | |
| TCTCATGTGCTTAAATATCA+AGG | + | chr2.3:12874503-12874522 | MS.gene90649:intron | 30.0% | |
| TCTGTTATCGAATATATCAG+TGG | - | chr2.3:12874401-12874420 | None:intergenic | 30.0% | |
| TGCCTCTTGCATAATATAAA+AGG | - | chr2.3:12874278-12874297 | None:intergenic | 30.0% | |
| CTTGTTGAATGTCATCAAGA+AGG | - | chr2.3:12874955-12874974 | None:intergenic | 35.0% | |
| GAACTATCTTTGTCAAGTGT+TGG | - | chr2.3:12874485-12874504 | None:intergenic | 35.0% | |
| TACAAAAGGGATGGAGAAAT+TGG | + | chr2.3:12874200-12874219 | MS.gene90649:CDS | 35.0% | |
| TAGTGGAAGAGCTTACAAAA+GGG | + | chr2.3:12874187-12874206 | MS.gene90649:CDS | 35.0% | |
| ! | GTATACGATTAGTTGTGACT+TGG | - | chr2.3:12874736-12874755 | None:intergenic | 35.0% |
| ! | TTGATTTTGGGCTTACATCA+CGG | + | chr2.3:12874630-12874649 | MS.gene90649:intron | 35.0% |
| !! | ATCTTTGTCAAGTGTTGGTT+GGG | - | chr2.3:12874480-12874499 | None:intergenic | 35.0% |
| !! | TATCTTTGTCAAGTGTTGGT+TGG | - | chr2.3:12874481-12874500 | None:intergenic | 35.0% |
| !!! | AAGGTTTTAGATTGAGGTTG+CGG | + | chr2.3:12874522-12874541 | MS.gene90649:intron | 35.0% |
| AACCTTGTCTCAACACATCT+AGG | - | chr2.3:12874923-12874942 | None:intergenic | 40.0% | |
| TCAGAGAACTCAACATGACT+TGG | - | chr2.3:12875008-12875027 | None:intergenic | 40.0% | |
| ! | AGAACTCAACATGACTTGGA+TGG | - | chr2.3:12875004-12875023 | None:intergenic | 40.0% |
| ! | AGTTTTTGATGTCTTCGCGT+TGG | - | chr2.3:12874610-12874629 | None:intergenic | 40.0% |
| ! | GTAGTGGAAGAGCTTACAAA+AGG | + | chr2.3:12874186-12874205 | MS.gene90649:CDS | 40.0% |
| ! | GTTCAAAGAAGGTGTAGTAG+TGG | + | chr2.3:12874170-12874189 | MS.gene90649:CDS | 40.0% |
| !! | GATTAGTTGTGACTTGGTGT+CGG | - | chr2.3:12874730-12874749 | None:intergenic | 40.0% |
| !! | TCTTTGTCAAGTGTTGGTTG+GGG | - | chr2.3:12874479-12874498 | None:intergenic | 40.0% |
| AGCCTAGATGTGTTGAGACA+AGG | + | chr2.3:12874918-12874937 | MS.gene90649:CDS | 45.0% | |
| CGGTCGTATACTCGTAGTTA+TGG | + | chr2.3:12874650-12874669 | MS.gene90649:intron | 45.0% | |
| GGAAGAGCTTACAAAAGGGA+TGG | + | chr2.3:12874191-12874210 | MS.gene90649:CDS | 45.0% | |
| GTATGTCTTATACAGGGGAC+AGG | + | chr2.3:12874887-12874906 | MS.gene90649:intron | 45.0% | |
| !! | ATGTCTTCGCGTTGGTAATG+TGG | - | chr2.3:12874602-12874621 | None:intergenic | 45.0% |
| !! | TTCCTTGACTGGCTTGACAA+GGG | - | chr2.3:12875081-12875100 | None:intergenic | 45.0% |
| AACCCTTGTCAAGCCAGTCA+AGG | + | chr2.3:12875076-12875095 | MS.gene90649:CDS | 50.0% | |
| TGAGGTTGCGGTCATGTTCA+CGG | + | chr2.3:12874534-12874553 | MS.gene90649:intron | 50.0% | |
| ! | CTGGCTTGACAAGGGTTGAA+GGG | - | chr2.3:12875073-12875092 | None:intergenic | 50.0% |
| ! | TGGTAATGTGGCTGCAATCG+AGG | - | chr2.3:12874590-12874609 | None:intergenic | 50.0% |
| !! | ACTGGCTTGACAAGGGTTGA+AGG | - | chr2.3:12875074-12875093 | None:intergenic | 50.0% |
| !! | CTTCCTTGACTGGCTTGACA+AGG | - | chr2.3:12875082-12875101 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 12874129 | 12875109 | 12874129 | ID=MS.gene90649 |
| chr2.3 | mRNA | 12874129 | 12875109 | 12874129 | ID=MS.gene90649.t1;Parent=MS.gene90649 |
| chr2.3 | exon | 12874129 | 12874256 | 12874129 | ID=MS.gene90649.t1.exon1;Parent=MS.gene90649.t1 |
| chr2.3 | CDS | 12874129 | 12874256 | 12874129 | ID=cds.MS.gene90649.t1;Parent=MS.gene90649.t1 |
| chr2.3 | exon | 12874902 | 12875109 | 12874902 | ID=MS.gene90649.t1.exon2;Parent=MS.gene90649.t1 |
| chr2.3 | CDS | 12874902 | 12875109 | 12874902 | ID=cds.MS.gene90649.t1;Parent=MS.gene90649.t1 |
| Gene Sequence |
| Protein sequence |
