AlfalfaGEDB | MS.gene58854

M. sativa cultivar XinJiangDaYe / MS.gene58854

KEGG: K11254
GO: GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0032991 GO:0032993 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044815 GO:0046982 GO:0046983 GO:0097159 GO:0110165 GO:1901363
PFAM: PF15511.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58854.t1	KCW52694.1	100	103	0	0	1	103	4	106	7.50E-48	199.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58854.t1	P62785	100.0	103	0	0	1	103	1	103	1.8e-50	199.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58854.t1	M5VRN0	100.0	103	0	0	1	103	1	103	5.4e-48	199.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050838	MS.gene58854	0.823291	1.50E-53	-1.69E-46
MS.gene051233	MS.gene58854	0.81913	1.36E-52	-1.69E-46
MS.gene052202	MS.gene58854	0.808227	3.44E-50	-1.69E-46
MS.gene056580	MS.gene58854	0.802558	5.30E-49	-1.69E-46
MS.gene057057	MS.gene58854	0.810338	1.21E-50	-1.69E-46
MS.gene057094	MS.gene58854	0.805705	1.17E-49	-1.69E-46
MS.gene057234	MS.gene58854	0.811122	8.20E-51	-1.69E-46
MS.gene058238	MS.gene58854	0.805254	1.46E-49	-1.69E-46
MS.gene058646	MS.gene58854	0.805549	1.27E-49	-1.69E-46
MS.gene058906	MS.gene58854	0.807178	5.74E-50	-1.69E-46
MS.gene06001	MS.gene58854	0.810043	1.40E-50	-1.69E-46
MS.gene060463	MS.gene58854	0.928413	2.99E-92	-1.69E-46
MS.gene060465	MS.gene58854	0.931965	1.73E-94	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene58854	MS.gene04433	PPI
MS.gene028629	MS.gene58854	PPI
MS.gene58854	MS.gene038469	PPI
MS.gene04433	MS.gene58854	PPI
MS.gene58854	MS.gene016624	PPI
MS.gene58854	MS.gene008276	PPI
MS.gene58854	MS.gene73136	PPI
MS.gene035787	MS.gene58854	PPI
MS.gene04067	MS.gene58854	PPI
MS.gene71215	MS.gene58854	PPI
MS.gene58854	MS.gene049821	PPI
MS.gene58854	MS.gene04068	PPI
MS.gene58854	MS.gene022946	PPI
MS.gene58854	MS.gene035719	PPI
MS.gene58854	MS.gene05623	PPI
MS.gene89487	MS.gene58854	PPI
MS.gene58854	MS.gene035720	PPI
MS.gene58854	MS.gene70955	PPI
MS.gene58854	MS.gene61017	PPI
MS.gene071136	MS.gene58854	PPI
MS.gene58854	MS.gene09871	PPI
MS.gene58854	MS.gene049705	PPI
MS.gene58854	MS.gene04434	PPI
MS.gene58854	MS.gene070907	PPI
MS.gene88680	MS.gene58854	PPI
MS.gene58854	MS.gene04392	PPI
MS.gene056215	MS.gene58854	PPI
MS.gene58854	MS.gene010219	PPI
MS.gene58854	MS.gene05608	PPI
MS.gene58854	MS.gene040383	PPI
MS.gene58854	MS.gene68545	PPI
MS.gene58854	MS.gene070242	PPI
MS.gene061876	MS.gene58854	PPI
MS.gene58854	MS.gene82546	PPI
MS.gene58854	MS.gene048746	PPI
MS.gene060463	MS.gene58854	PPI
MS.gene58854	MS.gene09873	PPI
MS.gene58854	MS.gene043967	PPI
MS.gene30920	MS.gene58854	PPI
MS.gene061872	MS.gene58854	PPI
MS.gene58854	MS.gene62520	PPI
MS.gene58854	MS.gene08053	PPI
MS.gene58854	MS.gene035897	PPI
MS.gene58854	MS.gene035721	PPI
MS.gene070241	MS.gene58854	PPI
MS.gene58854	MS.gene072493	PPI
MS.gene58854	MS.gene84536	PPI
MS.gene58854	MS.gene035896	PPI
MS.gene58854	MS.gene88681	PPI
MS.gene012391	MS.gene58854	PPI
MS.gene88681	MS.gene58854	PPI
MS.gene070244	MS.gene58854	PPI
MS.gene58854	MS.gene64650	PPI
MS.gene58854	MS.gene60093	PPI
MS.gene58854	MS.gene08122	PPI
MS.gene58854	MS.gene061869	PPI
MS.gene009027	MS.gene58854	PPI
MS.gene58854	MS.gene022932	PPI
MS.gene31196	MS.gene58854	PPI
MS.gene58854	MS.gene010220	PPI
MS.gene060465	MS.gene58854	PPI
MS.gene58854	MS.gene04972	PPI
MS.gene58854	MS.gene004121	PPI
MS.gene58854	MS.gene018578	PPI
MS.gene58854	MS.gene061867	PPI
MS.gene58854	MS.gene04064	PPI
MS.gene58854	MS.gene018580	PPI
MS.gene58854	MS.gene004124	PPI
MS.gene58854	MS.gene05619	PPI
MS.gene061870	MS.gene58854	PPI
MS.gene58854	MS.gene04052	PPI
MS.gene58854	MS.gene89488	PPI
MS.gene58854	MS.gene061866	PPI
MS.gene035718	MS.gene58854	PPI
MS.gene58854	MS.gene66225	PPI
MS.gene58854	MS.gene79195	PPI
MS.gene58854	MS.gene048705	PPI
MS.gene58854	MS.gene061874	PPI
MS.gene58854	MS.gene04576	PPI
MS.gene58854	MS.gene012390	PPI
MS.gene58854	MS.gene08121	PPI
MS.gene58854	MS.gene64920	PPI
MS.gene58854	MS.gene064557	PPI
MS.gene78578	MS.gene58854	PPI
MS.gene58854	MS.gene04452	PPI
MS.gene58854	MS.gene89487	PPI

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58854.t1	MTR_7g029510	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene58854.t1	MTR_7g099610	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene58854.t1	MTR_5g063620	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene58854.t1	MTR_4g061827	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene58854.t1	MTR_4g061920	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene58854.t1	MTR_3g462400	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene58854.t1	MTR_3g054380	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene58854.t1	MTR_3g462730	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene58854.t1	MTR_3g462510	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene58854.t1	MTR_3g070920	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene58854.t1	MTR_3g061440	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene58854.t1	MTR_3g462410	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene58854.t1	MTR_2g096100	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene58854.t1	MTR_8g038460	100.000	103	0	1	103	1	103	2.85e-68	199
MS.gene58854.t1	MTR_4g128150	100.000	102	0	1	102	1	102	1.67e-66	204
MS.gene58854.t1	MTR_7g029520	84.000	50	8	27	76	1	50	2.15e-21	87.0

Query id	Subject id	identity %	alignment length	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58854.t1	AT5G59970	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene58854.t1	AT5G59690	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene58854.t1	AT5G59970	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene58854.t1	AT3G46320	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene58854.t1	AT3G45930	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene58854.t1	AT3G53730	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene58854.t1	AT2G28740	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene58854.t1	AT1G07660	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene58854.t1	AT1G07820	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene58854.t1	AT1G07820	100.000	103	0	1	103	1	103	2.99e-68	199
MS.gene58854.t1	AT1G07660	83.495	103	1	1	103	1	86	4.34e-51	155

Find 0 sgRNAs with CRISPR-Local

Find 28 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	TTGATCTATGAGGAAACAAG+AGG	+	47696:3990-4009	MS.gene58854:CDS	35.0%
	AATCAGCGGTTTGATCTATG+AGG	+	47696:3980-3999	MS.gene58854:CDS	40.0%
	GGAGGTAAAGGATTAGGAAA+GGG	+	47696:3861-3880	MS.gene58854:CDS	40.0%
	GTTTATGCCCTTAAGAGACA+GGG	+	47696:4104-4123	MS.gene58854:CDS	40.0%
	TGATTCCTTGAATGTTGTCG+CGG	-	47696:3914-3933	MS.gene58854:intergenic	40.0%
	TGTTTATGCCCTTAAGAGAC+AGG	+	47696:4103-4122	MS.gene58854:CDS	40.0%
!!	AGGAGTGTTGAAGATCTTCT+TGG	+	47696:4010-4029	MS.gene58854:CDS	40.0%
	AAAGCCAGCAATTCGTCGAT+TGG	+	47696:3935-3954	MS.gene58854:CDS	45.0%
	GGAAAGGGAGGTAAAGGATT+AGG	+	47696:3855-3874	MS.gene58854:CDS	45.0%
	GGAAGAACCCTCTATGGTTT+CGG	+	47696:4125-4144	MS.gene58854:CDS	45.0%
	GGGAGGTAAAGGATTAGGAA+AGG	+	47696:3860-3879	MS.gene58854:CDS	45.0%
	GGTAAAGGATTAGGAAAGGG+AGG	+	47696:3864-3883	MS.gene58854:CDS	45.0%
	GGTTCTTCCCTGTCTCTTAA+GGG	-	47696:4114-4133	MS.gene58854:intergenic	45.0%
	TCAACCACCGAAACCATAGA+GGG	-	47696:4135-4154	MS.gene58854:intergenic	45.0%
	TTACTTACACTGAGCATGCG+AGG	+	47696:4054-4073	MS.gene58854:CDS	45.0%
!	GGAGGTGTGAAAAGAATCAG+CGG	+	47696:3966-3985	MS.gene58854:CDS	45.0%
	AGAACCCTCTATGGTTTCGG+TGG	+	47696:4128-4147	MS.gene58854:CDS	50.0%
	AGACAGGGAAGAACCCTCTA+TGG	+	47696:4119-4138	MS.gene58854:CDS	50.0%
	AGGTGCAAAGAGACATCGCA+AGG	+	47696:3884-3903	MS.gene58854:CDS	50.0%
	GAGGAAGACTGTGACTGCTA+TGG	+	47696:4076-4095	MS.gene58854:CDS	50.0%
	GGGTTCTTCCCTGTCTCTTA+AGG	-	47696:4115-4134	MS.gene58854:intergenic	50.0%
	GTTCTCCGCGACAACATTCA+AGG	+	47696:3906-3925	MS.gene58854:CDS	50.0%
!	ATTCGTCGATTGGCGAGAAG+AGG	+	47696:3945-3964	MS.gene58854:CDS	50.0%
	ATGTCTGGTCGTGGAAAGGG+AGG	+	47696:3843-3862	MS.gene58854:CDS	55.0%
	CTCGCCAATCGACGAATTGC+TGG	-	47696:3942-3961	MS.gene58854:intergenic	55.0%
	CTTACACTGAGCATGCGAGG+AGG	+	47696:4057-4076	MS.gene58854:CDS	55.0%
	GGTCGTGGAAAGGGAGGTAA+AGG	+	47696:3849-3868	MS.gene58854:CDS	55.0%
!	CGTCGATTGGCGAGAAGAGG+AGG	+	47696:3948-3967	MS.gene58854:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
47696	gene	3843	4154	3843	ID=MS.gene58854
47696	mRNA	3843	4154	3843	ID=MS.gene58854.t1;Parent=MS.gene58854
47696	exon	3843	4154	3843	ID=MS.gene58854.t1.exon1;Parent=MS.gene58854.t1
47696	CDS	3843	4154	3843	ID=cds.MS.gene58854.t1;Parent=MS.gene58854.t1

Gene Sequence	>MS.gene58854 ATGTCTGGTCGTGGAAAGGGAGGTAAAGGATTAGGAAAGGGAGGTGCAAAGAGACATCGCAAGGTTCTCCGCGACAACATTCAAGGAATCACAAAGCCAGCAATTCGTCGATTGGCGAGAAGAGGAGGTGTGAAAAGAATCAGCGGTTTGATCTATGAGGAAACAAGAGGAGTGTTGAAGATCTTCTTGGAGAATGTGATAAGAGATGCTGTTACTTACACTGAGCATGCGAGGAGGAAGACTGTGACTGCTATGGATGTTGTTTATGCCCTTAAGAGACAGGGAAGAACCCTCTATGGTTTCGGTGGTTGA
Protein sequence	>MS.gene58854.t1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG