Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07222.t1 | XP_003591517.1 | 98.3 | 119 | 2 | 0 | 1 | 119 | 1 | 119 | 6.00E-57 | 229.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07222.t1 | Q9M9W1 | 88.7 | 115 | 13 | 0 | 5 | 119 | 10 | 124 | 5.9e-53 | 208.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07222.t1 | G7IF49 | 98.3 | 119 | 2 | 0 | 1 | 119 | 1 | 119 | 4.3e-57 | 229.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene07222 | -0.811963 | 5.38E-51 | -1.69E-46 |
| MS.gene049140 | MS.gene07222 | 0.802235 | 6.18E-49 | -1.69E-46 |
| MS.gene049255 | MS.gene07222 | 0.860212 | 2.42E-63 | -1.69E-46 |
| MS.gene049340 | MS.gene07222 | 0.824972 | 6.04E-54 | -1.69E-46 |
| MS.gene049341 | MS.gene07222 | 0.848025 | 7.97E-60 | -1.69E-46 |
| MS.gene049580 | MS.gene07222 | 0.824281 | 8.79E-54 | -1.69E-46 |
| MS.gene049756 | MS.gene07222 | 0.809647 | 1.71E-50 | -1.69E-46 |
| MS.gene049821 | MS.gene07222 | 0.802578 | 5.25E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene07222 | 0.827211 | 1.77E-54 | -1.69E-46 |
| MS.gene050277 | MS.gene07222 | 0.908826 | 1.12E-81 | -1.69E-46 |
| MS.gene050290 | MS.gene07222 | 0.824352 | 8.45E-54 | -1.69E-46 |
| MS.gene050303 | MS.gene07222 | 0.824074 | 9.83E-54 | -1.69E-46 |
| MS.gene050320 | MS.gene07222 | 0.86108 | 1.32E-63 | -1.69E-46 |
| MS.gene050437 | MS.gene07222 | 0.831738 | 1.41E-55 | -1.69E-46 |
| MS.gene050689 | MS.gene07222 | 0.819134 | 1.36E-52 | -1.69E-46 |
| MS.gene050752 | MS.gene07222 | 0.859898 | 3.01E-63 | -1.69E-46 |
| MS.gene050807 | MS.gene07222 | 0.813809 | 2.12E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene07222 | 0.892965 | 9.75E-75 | -1.69E-46 |
| MS.gene050916 | MS.gene07222 | 0.837419 | 5.26E-57 | -1.69E-46 |
| MS.gene050955 | MS.gene07222 | 0.836956 | 6.91E-57 | -1.69E-46 |
| MS.gene051003 | MS.gene07222 | 0.807491 | 4.93E-50 | -1.69E-46 |
| MS.gene051063 | MS.gene07222 | 0.854904 | 9.02E-62 | -1.69E-46 |
| MS.gene051233 | MS.gene07222 | 0.81504 | 1.13E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene07222 | 0.81592 | 7.22E-52 | -1.69E-46 |
| MS.gene051241 | MS.gene07222 | 0.805867 | 1.09E-49 | -1.69E-46 |
| MS.gene051243 | MS.gene07222 | 0.809924 | 1.49E-50 | -1.69E-46 |
| MS.gene051245 | MS.gene07222 | 0.822781 | 1.97E-53 | -1.69E-46 |
| MS.gene051328 | MS.gene07222 | 0.83717 | 6.09E-57 | -1.69E-46 |
| MS.gene051330 | MS.gene07222 | 0.893187 | 7.94E-75 | -1.69E-46 |
| MS.gene051343 | MS.gene07222 | 0.832662 | 8.32E-56 | -1.69E-46 |
| MS.gene05134 | MS.gene07222 | 0.856552 | 2.98E-62 | -1.69E-46 |
| MS.gene051451 | MS.gene07222 | 0.863609 | 2.20E-64 | -1.69E-46 |
| MS.gene051633 | MS.gene07222 | 0.805696 | 1.18E-49 | -1.69E-46 |
| MS.gene051676 | MS.gene07222 | 0.804086 | 2.56E-49 | -1.69E-46 |
| MS.gene051687 | MS.gene07222 | 0.820995 | 5.11E-53 | -1.69E-46 |
| MS.gene051700 | MS.gene07222 | 0.82901 | 6.54E-55 | -1.69E-46 |
| MS.gene051746 | MS.gene07222 | 0.899871 | 1.29E-77 | -1.69E-46 |
| MS.gene051748 | MS.gene07222 | 0.903091 | 4.96E-79 | -1.69E-46 |
| MS.gene051756 | MS.gene07222 | 0.836267 | 1.03E-56 | -1.69E-46 |
| MS.gene051757 | MS.gene07222 | 0.808828 | 2.56E-50 | -1.69E-46 |
| MS.gene051850 | MS.gene07222 | 0.87186 | 4.95E-67 | -1.69E-46 |
| MS.gene051885 | MS.gene07222 | 0.823454 | 1.37E-53 | -1.69E-46 |
| MS.gene05188 | MS.gene07222 | 0.83828 | 3.16E-57 | -1.69E-46 |
| MS.gene051903 | MS.gene07222 | 0.931354 | 4.27E-94 | -1.69E-46 |
| MS.gene051975 | MS.gene07222 | 0.832481 | 9.22E-56 | -1.69E-46 |
| MS.gene052133 | MS.gene07222 | 0.861228 | 1.19E-63 | -1.69E-46 |
| MS.gene052202 | MS.gene07222 | 0.814587 | 1.43E-51 | -1.69E-46 |
| MS.gene052286 | MS.gene07222 | 0.827452 | 1.55E-54 | -1.69E-46 |
| MS.gene052302 | MS.gene07222 | 0.841873 | 3.65E-58 | -1.69E-46 |
| MS.gene052335 | MS.gene07222 | 0.809377 | 1.95E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene07222 | 0.830956 | 2.19E-55 | -1.69E-46 |
| MS.gene052818 | MS.gene07222 | -0.80137 | 9.30E-49 | -1.69E-46 |
| MS.gene052879 | MS.gene07222 | 0.82748 | 1.53E-54 | -1.69E-46 |
| MS.gene052880 | MS.gene07222 | 0.81272 | 3.68E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene07222 | 0.928758 | 1.84E-92 | -1.69E-46 |
| MS.gene053058 | MS.gene07222 | 0.838411 | 2.92E-57 | -1.69E-46 |
| MS.gene053109 | MS.gene07222 | 0.878472 | 2.73E-69 | -1.69E-46 |
| MS.gene053437 | MS.gene07222 | 0.803641 | 3.16E-49 | -1.69E-46 |
| MS.gene053564 | MS.gene07222 | 0.804591 | 2.01E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene07222 | 0.831095 | 2.03E-55 | -1.69E-46 |
| MS.gene053590 | MS.gene07222 | 0.814909 | 1.21E-51 | -1.69E-46 |
| MS.gene053952 | MS.gene07222 | 0.891805 | 2.84E-74 | -1.69E-46 |
| MS.gene054250 | MS.gene07222 | 0.80179 | 7.62E-49 | -1.69E-46 |
| MS.gene054403 | MS.gene07222 | 0.85927 | 4.65E-63 | -1.69E-46 |
| MS.gene05469 | MS.gene07222 | 0.820004 | 8.62E-53 | -1.69E-46 |
| MS.gene054937 | MS.gene07222 | 0.864552 | 1.12E-64 | -1.69E-46 |
| MS.gene055162 | MS.gene07222 | 0.846516 | 2.07E-59 | -1.69E-46 |
| MS.gene055424 | MS.gene07222 | 0.858329 | 8.88E-63 | -1.69E-46 |
| MS.gene055555 | MS.gene07222 | 0.823624 | 1.25E-53 | -1.69E-46 |
| MS.gene055580 | MS.gene07222 | -0.803667 | 3.12E-49 | -1.69E-46 |
| MS.gene055591 | MS.gene07222 | -0.832706 | 8.11E-56 | -1.69E-46 |
| MS.gene055808 | MS.gene07222 | 0.834709 | 2.56E-56 | -1.69E-46 |
| MS.gene056043 | MS.gene07222 | -0.821175 | 4.64E-53 | -1.69E-46 |
| MS.gene056075 | MS.gene07222 | 0.895042 | 1.39E-75 | -1.69E-46 |
| MS.gene056091 | MS.gene07222 | 0.846782 | 1.75E-59 | -1.69E-46 |
| MS.gene056215 | MS.gene07222 | 0.815932 | 7.18E-52 | -1.69E-46 |
| MS.gene056432 | MS.gene07222 | 0.844221 | 8.65E-59 | -1.69E-46 |
| MS.gene056580 | MS.gene07222 | 0.827533 | 1.48E-54 | -1.69E-46 |
| MS.gene056601 | MS.gene07222 | 0.859582 | 3.74E-63 | -1.69E-46 |
| MS.gene056631 | MS.gene07222 | 0.913007 | 1.01E-83 | -1.69E-46 |
| MS.gene056760 | MS.gene07222 | 0.820263 | 7.52E-53 | -1.69E-46 |
| MS.gene056986 | MS.gene07222 | 0.830197 | 3.36E-55 | -1.69E-46 |
| MS.gene057057 | MS.gene07222 | 0.851328 | 9.54E-61 | -1.69E-46 |
| MS.gene057094 | MS.gene07222 | 0.907429 | 5.12E-81 | -1.69E-46 |
| MS.gene057140 | MS.gene07222 | 0.816332 | 5.84E-52 | -1.69E-46 |
| MS.gene057206 | MS.gene07222 | 0.827308 | 1.68E-54 | -1.69E-46 |
| MS.gene057234 | MS.gene07222 | 0.874078 | 8.94E-68 | -1.69E-46 |
| MS.gene057694 | MS.gene07222 | 0.805646 | 1.21E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene07222 | 0.903437 | 3.47E-79 | -1.69E-46 |
| MS.gene05781 | MS.gene07222 | 0.827612 | 1.42E-54 | -1.69E-46 |
| MS.gene057999 | MS.gene07222 | 0.814149 | 1.78E-51 | -1.69E-46 |
| MS.gene058054 | MS.gene07222 | 0.811701 | 6.14E-51 | -1.69E-46 |
| MS.gene058055 | MS.gene07222 | 0.84854 | 5.74E-60 | -1.69E-46 |
| MS.gene058074 | MS.gene07222 | 0.825452 | 4.65E-54 | -1.69E-46 |
| MS.gene058084 | MS.gene07222 | 0.809144 | 2.19E-50 | -1.69E-46 |
| MS.gene05809 | MS.gene07222 | 0.827163 | 1.82E-54 | -1.69E-46 |
| MS.gene058216 | MS.gene07222 | 0.80567 | 1.19E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene07222 | 0.86842 | 6.62E-66 | -1.69E-46 |
| MS.gene058364 | MS.gene07222 | 0.812544 | 4.02E-51 | -1.69E-46 |
| MS.gene058852 | MS.gene07222 | 0.830297 | 3.18E-55 | -1.69E-46 |
| MS.gene058906 | MS.gene07222 | 0.882062 | 1.43E-70 | -1.69E-46 |
| MS.gene059146 | MS.gene07222 | 0.804448 | 2.15E-49 | -1.69E-46 |
| MS.gene059171 | MS.gene07222 | 0.835502 | 1.62E-56 | -1.69E-46 |
| MS.gene059227 | MS.gene07222 | 0.834438 | 3.00E-56 | -1.69E-46 |
| MS.gene059726 | MS.gene07222 | 0.826924 | 2.08E-54 | -1.69E-46 |
| MS.gene05978 | MS.gene07222 | 0.818051 | 2.40E-52 | -1.69E-46 |
| MS.gene059830 | MS.gene07222 | 0.806673 | 7.34E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene07222 | 0.841792 | 3.83E-58 | -1.69E-46 |
| MS.gene06001 | MS.gene07222 | 0.954828 | 1.22E-112 | -1.69E-46 |
| MS.gene06011 | MS.gene07222 | 0.845185 | 4.75E-59 | -1.69E-46 |
| MS.gene060429 | MS.gene07222 | 0.863977 | 1.69E-64 | -1.69E-46 |
| MS.gene060463 | MS.gene07222 | 0.842626 | 2.30E-58 | -1.69E-46 |
| MS.gene060465 | MS.gene07222 | 0.848799 | 4.87E-60 | -1.69E-46 |
| MS.gene060586 | MS.gene07222 | 0.808347 | 3.24E-50 | -1.69E-46 |
| MS.gene060763 | MS.gene07222 | 0.832768 | 7.83E-56 | -1.69E-46 |
| MS.gene060830 | MS.gene07222 | 0.806919 | 6.51E-50 | -1.69E-46 |
| MS.gene060917 | MS.gene07222 | 0.851107 | 1.10E-60 | -1.69E-46 |
| MS.gene061145 | MS.gene07222 | 0.865754 | 4.69E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07222.t1 | MTR_1g088450 | 98.319 | 119 | 2 | 0 | 1 | 119 | 1 | 119 | 5.80e-83 | 238 |
| MS.gene07222.t1 | MTR_1g083430 | 89.076 | 119 | 12 | 1 | 2 | 119 | 7 | 125 | 1.68e-63 | 189 |
| MS.gene07222.t1 | MTR_7g112770 | 94.444 | 108 | 6 | 0 | 12 | 119 | 17 | 124 | 1.15e-61 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07222.t1 | AT3G05560 | 87.931 | 116 | 14 | 0 | 4 | 119 | 9 | 124 | 5.82e-63 | 187 |
| MS.gene07222.t1 | AT3G05560 | 87.931 | 116 | 14 | 0 | 4 | 119 | 9 | 124 | 5.82e-63 | 187 |
| MS.gene07222.t1 | AT3G05560 | 87.931 | 116 | 14 | 0 | 4 | 119 | 9 | 124 | 5.82e-63 | 187 |
| MS.gene07222.t1 | AT5G27770 | 86.735 | 98 | 13 | 0 | 11 | 108 | 16 | 113 | 1.42e-49 | 154 |
| MS.gene07222.t1 | AT1G02830 | 75.229 | 109 | 27 | 0 | 2 | 110 | 9 | 117 | 9.39e-46 | 144 |
Find 27 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCCTGGAGAAGTTTCTTC+AGG | 0.314117 | 1.4:-70241835 | MS.gene07222:CDS |
| GCCAGTTGAGGATAAGATTA+TGG | 0.328511 | 1.4:-70241865 | MS.gene07222:CDS |
| ATAGATATTGCGGTCCTTGT+TGG | 0.377160 | 1.4:+70240709 | None:intergenic |
| TCCATAATCTTATCCTCAAC+TGG | 0.404476 | 1.4:+70241864 | None:intergenic |
| CGGAGTGAAGGGTAAGAAGA+AGG | 0.409364 | 1.4:-70241916 | MS.gene07222:CDS |
| ATCGGAGGTAACAGTGATCT+TGG | 0.422181 | 1.4:+70241746 | None:intergenic |
| GATTATGGACATCGCTTCCC+TGG | 0.434039 | 1.4:-70241850 | MS.gene07222:CDS |
| CGCGAAAATGAGCGGAGTGA+AGG | 0.462475 | 1.4:-70241928 | None:intergenic |
| TCTCCTGAAGAAACTTCTCC+AGG | 0.463361 | 1.4:+70241832 | None:intergenic |
| AAAAGCACAATGTGAGGGAT+TGG | 0.474548 | 1.4:-70240748 | MS.gene07222:CDS |
| CTTCAACATTGCTGAGAATG+AGG | 0.480373 | 1.4:-70240675 | MS.gene07222:CDS |
| CCGATAGCAATTTCTCCAAA+AGG | 0.482446 | 1.4:-70241728 | MS.gene07222:intron |
| ATTAAAGTTGGTGGTAAAGC+TGG | 0.482585 | 1.4:-70241807 | MS.gene07222:CDS |
| GCGAAAATGAGCGGAGTGAA+GGG | 0.509201 | 1.4:-70241927 | None:intergenic |
| CTTCAGGAGAGGATTAAAGT+TGG | 0.530224 | 1.4:-70241819 | MS.gene07222:CDS |
| CAGGAGAGGATTAAAGTTGG+TGG | 0.545199 | 1.4:-70241816 | MS.gene07222:CDS |
| GGTGGTAAAGCTGGTGCTCT+CGG | 0.555561 | 1.4:-70241798 | MS.gene07222:CDS |
| CGATTGCGCGAAGCCAGTTG+AGG | 0.561050 | 1.4:-70241877 | MS.gene07222:CDS |
| TGGAGAAGTTTCTTCAGGAG+AGG | 0.565476 | 1.4:-70241830 | MS.gene07222:CDS |
| GGAGTGAAGGGTAAGAAGAA+GGG | 0.572006 | 1.4:-70241915 | MS.gene07222:CDS |
| ATCTCAACTCATAGATATTG+CGG | 0.582807 | 1.4:+70240699 | None:intergenic |
| AGTCTCAACGCGAAAATGAG+CGG | 0.596462 | 1.4:-70241936 | None:intergenic |
| TTTGGAGAAATTGCTATCGG+AGG | 0.603460 | 1.4:+70241731 | None:intergenic |
| TCGTGTTATTGCATCCAACA+AGG | 0.613064 | 1.4:-70240723 | MS.gene07222:CDS |
| TTCAACATTGCTGAGAATGA+GGG | 0.613248 | 1.4:-70240674 | MS.gene07222:CDS |
| CTCCTGAAGAAACTTCTCCA+GGG | 0.621359 | 1.4:+70241833 | None:intergenic |
| TTTGTCACGAGTAACAGTAA+CGG | 0.687075 | 1.4:+70241770 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTATGTCTTAATTTTTTT+TGG | - | chr1.4:70241697-70241716 | MS.gene07222:intron | 15.0% |
| !! | AAAATTATGTTGTTAGTGAA+TGG | - | chr1.4:70241103-70241122 | MS.gene07222:intron | 20.0% |
| !! | AAATTATGTTGTTAGTGAAT+GGG | - | chr1.4:70241104-70241123 | MS.gene07222:intron | 20.0% |
| !! | ATTTGACATTATTATGATTC+TGG | - | chr1.4:70241577-70241596 | MS.gene07222:intron | 20.0% |
| !!! | TATTTGTTGATTAATGTGTT+AGG | - | chr1.4:70240890-70240909 | MS.gene07222:intron | 20.0% |
| ! | AAAAATAGTTAAACTGAGCT+GGG | + | chr1.4:70241628-70241647 | None:intergenic | 25.0% |
| ! | ATATTTAGTGTATGTTTGGA+TGG | - | chr1.4:70241154-70241173 | MS.gene07222:intron | 25.0% |
| ! | TAAAAATAGTTAAACTGAGC+TGG | + | chr1.4:70241629-70241648 | None:intergenic | 25.0% |
| ! | TATTTAGTGTATGTTTGGAT+GGG | - | chr1.4:70241155-70241174 | MS.gene07222:intron | 25.0% |
| ! | TCGTATATTTAGTGTATGTT+TGG | - | chr1.4:70241150-70241169 | MS.gene07222:intron | 25.0% |
| ATACAAGTCTTCTTCTTCTT+TGG | - | chr1.4:70241720-70241739 | MS.gene07222:intron | 30.0% | |
| ATCTCAACTCATAGATATTG+CGG | + | chr1.4:70241883-70241902 | None:intergenic | 30.0% | |
| CATGTGAACATTTCATTTAC+AGG | + | chr1.4:70240946-70240965 | None:intergenic | 30.0% | |
| CATGTGTTTGAGTAATTATG+TGG | - | chr1.4:70240962-70240981 | MS.gene07222:intron | 30.0% | |
| GTCAAATTCTATTCACATAC+AGG | + | chr1.4:70241564-70241583 | None:intergenic | 30.0% | |
| ! | AAGATGAAGAAGTTACCTTT+TGG | + | chr1.4:70240869-70240888 | None:intergenic | 30.0% |
| ! | ACTGTAAGTCACCATAATTT+TGG | + | chr1.4:70241229-70241248 | None:intergenic | 30.0% |
| ! | CTGTAAGTCACCATAATTTT+GGG | + | chr1.4:70241228-70241247 | None:intergenic | 30.0% |
| !!! | TTTTGTTATTTTCTACCGTG+AGG | - | chr1.4:70241349-70241368 | MS.gene07222:intron | 30.0% |
| ACAGGAATACTAGACAATAG+TGG | + | chr1.4:70241546-70241565 | None:intergenic | 35.0% | |
| ATTGAATATTGAGACAGTGC+TGG | - | chr1.4:70241010-70241029 | MS.gene07222:intron | 35.0% | |
| CATCAATTGCAGGTTTCAAT+TGG | + | chr1.4:70241270-70241289 | None:intergenic | 35.0% | |
| GGACAAAAATAATCACACGA+AGG | + | chr1.4:70241757-70241776 | None:intergenic | 35.0% | |
| TCCATAATCTTATCCTCAAC+TGG | + | chr1.4:70240718-70240737 | None:intergenic | 35.0% | |
| TGTCATGAGAATCCTTAAGT+TGG | + | chr1.4:70241475-70241494 | None:intergenic | 35.0% | |
| TTCAACATTGCTGAGAATGA+GGG | - | chr1.4:70241905-70241924 | MS.gene07222:CDS | 35.0% | |
| TTTGTCACGAGTAACAGTAA+CGG | + | chr1.4:70240812-70240831 | None:intergenic | 35.0% | |
| ! | ACTTGAAAAAGCACAATGTG+AGG | - | chr1.4:70241825-70241844 | MS.gene07222:CDS | 35.0% |
| ! | ATGATTTGTGTAAATGGTCC+TGG | - | chr1.4:70241517-70241536 | MS.gene07222:intron | 35.0% |
| ! | CGTAGGTTTTCCCAAAATTA+TGG | - | chr1.4:70241215-70241234 | MS.gene07222:intron | 35.0% |
| ! | CTTGAAAAAGCACAATGTGA+GGG | - | chr1.4:70241826-70241845 | MS.gene07222:CDS | 35.0% |
| ! | GCGAGTATGATTTGTGTAAA+TGG | - | chr1.4:70241511-70241530 | MS.gene07222:intron | 35.0% |
| !! | ACACTATGCTTGTTGTGAAA+GGG | - | chr1.4:70241393-70241412 | MS.gene07222:intron | 35.0% |
| !! | ATGTGGCTTTGAAATGTTGA+TGG | - | chr1.4:70240979-70240998 | MS.gene07222:intron | 35.0% |
| !! | ATTAAAGTTGGTGGTAAAGC+TGG | - | chr1.4:70240772-70240791 | MS.gene07222:CDS | 35.0% |
| !! | CCTTTTGGAGAAATTGCTAT+CGG | + | chr1.4:70240854-70240873 | None:intergenic | 35.0% |
| !!! | GTGCTTTTTCAAGTACTTCT+TGG | + | chr1.4:70241819-70241838 | None:intergenic | 35.0% |
| AGGTCTAGTTGTTGCTGTAT+GGG | - | chr1.4:70241369-70241388 | MS.gene07222:intron | 40.0% | |
| ATAGATATTGCGGTCCTTGT+TGG | + | chr1.4:70241873-70241892 | None:intergenic | 40.0% | |
| CCGATAGCAATTTCTCCAAA+AGG | - | chr1.4:70240851-70240870 | MS.gene07222:intron | 40.0% | |
| CTTCAACATTGCTGAGAATG+AGG | - | chr1.4:70241904-70241923 | MS.gene07222:CDS | 40.0% | |
| CTTCAGGAGAGGATTAAAGT+TGG | - | chr1.4:70240760-70240779 | MS.gene07222:CDS | 40.0% | |
| GAAAATGCCATTACCAGTCT+TGG | - | chr1.4:70241422-70241441 | MS.gene07222:intron | 40.0% | |
| GCCAGTTGAGGATAAGATTA+TGG | - | chr1.4:70240714-70240733 | MS.gene07222:CDS | 40.0% | |
| GGTCAAGTACTTCAAATACC+TGG | + | chr1.4:70241798-70241817 | None:intergenic | 40.0% | |
| GTACTTCAAATACCTGGCAA+AGG | + | chr1.4:70241792-70241811 | None:intergenic | 40.0% | |
| TAATCAACACTACCTTTGCC+AGG | - | chr1.4:70241777-70241796 | MS.gene07222:CDS | 40.0% | |
| TGACTACACACATCAATTGC+AGG | + | chr1.4:70241280-70241299 | None:intergenic | 40.0% | |
| TGGGAAAACCTACGAATTCA+GGG | + | chr1.4:70241209-70241228 | None:intergenic | 40.0% | |
| TTAGTGTATGTTTGGATGGG+TGG | - | chr1.4:70241158-70241177 | MS.gene07222:intron | 40.0% | |
| TTGGGAAAACCTACGAATTC+AGG | + | chr1.4:70241210-70241229 | None:intergenic | 40.0% | |
| TTTGGAGAAATTGCTATCGG+AGG | + | chr1.4:70240851-70240870 | None:intergenic | 40.0% | |
| ! | AAAAGCACAATGTGAGGGAT+TGG | - | chr1.4:70241831-70241850 | MS.gene07222:CDS | 40.0% |
| ! | TCGTGTTATTGCATCCAACA+AGG | - | chr1.4:70241856-70241875 | MS.gene07222:CDS | 40.0% |
| !! | CACACTATGCTTGTTGTGAA+AGG | - | chr1.4:70241392-70241411 | MS.gene07222:intron | 40.0% |
| !! | TGAGAATCCTTAAGTTGGCA+CGG | + | chr1.4:70241470-70241489 | None:intergenic | 40.0% |
| !! | TGGCAAAGGTAGTGTTGATT+AGG | + | chr1.4:70241778-70241797 | None:intergenic | 40.0% |
| ACAGCAACAACTAGACCTCA+CGG | + | chr1.4:70241367-70241386 | None:intergenic | 45.0% | |
| ATCGGAGGTAACAGTGATCT+TGG | + | chr1.4:70240836-70240855 | None:intergenic | 45.0% | |
| CAAACATCACAAGCCAAGAC+TGG | + | chr1.4:70241438-70241457 | None:intergenic | 45.0% | |
| CAGGAGAGGATTAAAGTTGG+TGG | - | chr1.4:70240763-70240782 | MS.gene07222:CDS | 45.0% | |
| CTCCTGAAGAAACTTCTCCA+GGG | + | chr1.4:70240749-70240768 | None:intergenic | 45.0% | |
| GAGGTCTAGTTGTTGCTGTA+TGG | - | chr1.4:70241368-70241387 | MS.gene07222:intron | 45.0% | |
| GGAGTGAAGGGTAAGAAGAA+GGG | - | chr1.4:70240664-70240683 | MS.gene07222:CDS | 45.0% | |
| TCACAAGCCAAGACTGGTAA+TGG | + | chr1.4:70241432-70241451 | None:intergenic | 45.0% | |
| TCTCCTGAAGAAACTTCTCC+AGG | + | chr1.4:70240750-70240769 | None:intergenic | 45.0% | |
| TGGAGAAGTTTCTTCAGGAG+AGG | - | chr1.4:70240749-70240768 | MS.gene07222:CDS | 45.0% | |
| TTCCCTGGAGAAGTTTCTTC+AGG | - | chr1.4:70240744-70240763 | MS.gene07222:CDS | 45.0% | |
| TTCTGGTGCAGTTACTGAAC+TGG | - | chr1.4:70241594-70241613 | MS.gene07222:intron | 45.0% | |
| !! | ACTAGACAATAGTGGACACC+AGG | + | chr1.4:70241538-70241557 | None:intergenic | 45.0% |
| !! | GAGAATCCTTAAGTTGGCAC+GGG | + | chr1.4:70241469-70241488 | None:intergenic | 45.0% |
| CGGAGTGAAGGGTAAGAAGA+AGG | - | chr1.4:70240663-70240682 | MS.gene07222:CDS | 50.0% | |
| CGTTAGCACCCTGAATTCGT+AGG | - | chr1.4:70241198-70241217 | MS.gene07222:intron | 50.0% | |
| GATTATGGACATCGCTTCCC+TGG | - | chr1.4:70240729-70240748 | MS.gene07222:CDS | 50.0% | |
| TGCATTCCCGTGCCAACTTA+AGG | - | chr1.4:70241460-70241479 | MS.gene07222:intron | 50.0% | |
| GGTGGTAAAGCTGGTGCTCT+CGG | - | chr1.4:70240781-70240800 | MS.gene07222:CDS | 55.0% | |
| CGATTGCGCGAAGCCAGTTG+AGG | - | chr1.4:70240702-70240721 | MS.gene07222:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 70240658 | 70241943 | 70240658 | ID=MS.gene07222 |
| chr1.4 | mRNA | 70240658 | 70241943 | 70240658 | ID=MS.gene07222.t1;Parent=MS.gene07222 |
| chr1.4 | exon | 70241729 | 70241943 | 70241729 | ID=MS.gene07222.t1.exon1;Parent=MS.gene07222.t1 |
| chr1.4 | CDS | 70241729 | 70241943 | 70241729 | ID=cds.MS.gene07222.t1;Parent=MS.gene07222.t1 |
| chr1.4 | exon | 70240658 | 70240802 | 70240658 | ID=MS.gene07222.t1.exon2;Parent=MS.gene07222.t1 |
| chr1.4 | CDS | 70240658 | 70240802 | 70240658 | ID=cds.MS.gene07222.t1;Parent=MS.gene07222.t1 |
| Gene Sequence |
| Protein sequence |
