Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07217.t1 | XP_003591527.1 | 98.1 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 5.00E-47 | 196.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07217.t1 | C4Y4R9 | 31.3 | 99 | 63 | 1 | 7 | 105 | 6 | 99 | 2.8e-06 | 52.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07217.t1 | G7IF59 | 98.1 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 3.6e-47 | 196.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene07217 | 0.857273 | 1.83E-62 | -1.69E-46 |
| MS.gene049340 | MS.gene07217 | 0.822609 | 2.16E-53 | -1.69E-46 |
| MS.gene049341 | MS.gene07217 | 0.840836 | 6.84E-58 | -1.69E-46 |
| MS.gene049382 | MS.gene07217 | 0.80777 | 4.30E-50 | -1.69E-46 |
| MS.gene049653 | MS.gene07217 | 0.816395 | 5.65E-52 | -1.69E-46 |
| MS.gene049756 | MS.gene07217 | 0.825637 | 4.20E-54 | -1.69E-46 |
| MS.gene049887 | MS.gene07217 | 0.811857 | 5.68E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene07217 | 0.919275 | 5.51E-87 | -1.69E-46 |
| MS.gene050317 | MS.gene07217 | 0.800749 | 1.25E-48 | -1.69E-46 |
| MS.gene050320 | MS.gene07217 | 0.830543 | 2.77E-55 | -1.69E-46 |
| MS.gene050437 | MS.gene07217 | 0.841943 | 3.50E-58 | -1.69E-46 |
| MS.gene050689 | MS.gene07217 | 0.828279 | 9.82E-55 | -1.69E-46 |
| MS.gene050721 | MS.gene07217 | 0.802051 | 6.74E-49 | -1.69E-46 |
| MS.gene050752 | MS.gene07217 | 0.823488 | 1.35E-53 | -1.69E-46 |
| MS.gene050815 | MS.gene07217 | 0.827783 | 1.29E-54 | -1.69E-46 |
| MS.gene050838 | MS.gene07217 | 0.833051 | 6.66E-56 | -1.69E-46 |
| MS.gene051063 | MS.gene07217 | 0.855228 | 7.26E-62 | -1.69E-46 |
| MS.gene051241 | MS.gene07217 | 0.829858 | 4.07E-55 | -1.69E-46 |
| MS.gene051243 | MS.gene07217 | 0.848051 | 7.84E-60 | -1.69E-46 |
| MS.gene051245 | MS.gene07217 | 0.883547 | 4.09E-71 | -1.69E-46 |
| MS.gene051328 | MS.gene07217 | 0.852074 | 5.86E-61 | -1.69E-46 |
| MS.gene051330 | MS.gene07217 | 0.819621 | 1.06E-52 | -1.69E-46 |
| MS.gene051349 | MS.gene07217 | 0.817091 | 3.95E-52 | -1.69E-46 |
| MS.gene05134 | MS.gene07217 | 0.835747 | 1.40E-56 | -1.69E-46 |
| MS.gene051451 | MS.gene07217 | 0.832838 | 7.52E-56 | -1.69E-46 |
| MS.gene051577 | MS.gene07217 | 0.80956 | 1.78E-50 | -1.69E-46 |
| MS.gene051633 | MS.gene07217 | 0.84059 | 7.93E-58 | -1.69E-46 |
| MS.gene051746 | MS.gene07217 | 0.848664 | 5.31E-60 | -1.69E-46 |
| MS.gene051748 | MS.gene07217 | 0.851817 | 6.93E-61 | -1.69E-46 |
| MS.gene051756 | MS.gene07217 | 0.864883 | 8.82E-65 | -1.69E-46 |
| MS.gene051757 | MS.gene07217 | 0.838665 | 2.51E-57 | -1.69E-46 |
| MS.gene051789 | MS.gene07217 | 0.805187 | 1.51E-49 | -1.69E-46 |
| MS.gene051850 | MS.gene07217 | 0.831409 | 1.70E-55 | -1.69E-46 |
| MS.gene051903 | MS.gene07217 | 0.889102 | 3.27E-73 | -1.69E-46 |
| MS.gene052202 | MS.gene07217 | 0.830227 | 3.31E-55 | -1.69E-46 |
| MS.gene052286 | MS.gene07217 | 0.846636 | 1.92E-59 | -1.69E-46 |
| MS.gene052302 | MS.gene07217 | 0.848209 | 7.09E-60 | -1.69E-46 |
| MS.gene052376 | MS.gene07217 | 0.839424 | 1.60E-57 | -1.69E-46 |
| MS.gene052856 | MS.gene07217 | 0.818141 | 2.29E-52 | -1.69E-46 |
| MS.gene052879 | MS.gene07217 | 0.801622 | 8.25E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene07217 | 0.844735 | 6.29E-59 | -1.69E-46 |
| MS.gene053109 | MS.gene07217 | 0.86329 | 2.77E-64 | -1.69E-46 |
| MS.gene053437 | MS.gene07217 | 0.805361 | 1.39E-49 | -1.69E-46 |
| MS.gene053590 | MS.gene07217 | 0.813646 | 2.30E-51 | -1.69E-46 |
| MS.gene053952 | MS.gene07217 | 0.833376 | 5.53E-56 | -1.69E-46 |
| MS.gene054403 | MS.gene07217 | 0.816743 | 4.73E-52 | -1.69E-46 |
| MS.gene055133 | MS.gene07217 | 0.838295 | 3.13E-57 | -1.69E-46 |
| MS.gene055162 | MS.gene07217 | 0.849427 | 3.26E-60 | -1.69E-46 |
| MS.gene055424 | MS.gene07217 | 0.837842 | 4.09E-57 | -1.69E-46 |
| MS.gene055441 | MS.gene07217 | 0.825311 | 5.02E-54 | -1.69E-46 |
| MS.gene055512 | MS.gene07217 | 0.806144 | 9.49E-50 | -1.69E-46 |
| MS.gene055591 | MS.gene07217 | -0.814852 | 1.25E-51 | -1.69E-46 |
| MS.gene056432 | MS.gene07217 | 0.856369 | 3.37E-62 | -1.69E-46 |
| MS.gene056580 | MS.gene07217 | 0.841125 | 5.74E-58 | -1.69E-46 |
| MS.gene056601 | MS.gene07217 | 0.854249 | 1.40E-61 | -1.69E-46 |
| MS.gene056631 | MS.gene07217 | 0.884675 | 1.57E-71 | -1.69E-46 |
| MS.gene056760 | MS.gene07217 | 0.865948 | 4.08E-65 | -1.69E-46 |
| MS.gene057057 | MS.gene07217 | 0.874218 | 8.02E-68 | -1.69E-46 |
| MS.gene057079 | MS.gene07217 | 0.802738 | 4.87E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene07217 | 0.853508 | 2.28E-61 | -1.69E-46 |
| MS.gene057140 | MS.gene07217 | 0.892867 | 1.07E-74 | -1.69E-46 |
| MS.gene057234 | MS.gene07217 | 0.914734 | 1.35E-84 | -1.69E-46 |
| MS.gene057260 | MS.gene07217 | 0.800442 | 1.44E-48 | -1.69E-46 |
| MS.gene057705 | MS.gene07217 | 0.840486 | 8.45E-58 | -1.69E-46 |
| MS.gene05781 | MS.gene07217 | 0.807113 | 5.92E-50 | -1.69E-46 |
| MS.gene05795 | MS.gene07217 | 0.815828 | 7.57E-52 | -1.69E-46 |
| MS.gene058054 | MS.gene07217 | 0.821645 | 3.62E-53 | -1.69E-46 |
| MS.gene058055 | MS.gene07217 | 0.881698 | 1.93E-70 | -1.69E-46 |
| MS.gene05809 | MS.gene07217 | 0.814037 | 1.89E-51 | -1.69E-46 |
| MS.gene058182 | MS.gene07217 | 0.856145 | 3.92E-62 | -1.69E-46 |
| MS.gene058238 | MS.gene07217 | 0.891201 | 4.93E-74 | -1.69E-46 |
| MS.gene058646 | MS.gene07217 | 0.811576 | 6.53E-51 | -1.69E-46 |
| MS.gene058654 | MS.gene07217 | 0.824469 | 7.94E-54 | -1.69E-46 |
| MS.gene058906 | MS.gene07217 | 0.928988 | 1.32E-92 | -1.69E-46 |
| MS.gene059317 | MS.gene07217 | 0.80387 | 2.84E-49 | -1.69E-46 |
| MS.gene059830 | MS.gene07217 | 0.804341 | 2.26E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene07217 | 0.893537 | 5.73E-75 | -1.69E-46 |
| MS.gene06001 | MS.gene07217 | 0.895573 | 8.43E-76 | -1.69E-46 |
| MS.gene060165 | MS.gene07217 | 0.811327 | 7.40E-51 | -1.69E-46 |
| MS.gene060297 | MS.gene07217 | 0.809084 | 2.25E-50 | -1.69E-46 |
| MS.gene060463 | MS.gene07217 | 0.816915 | 4.32E-52 | -1.69E-46 |
| MS.gene060465 | MS.gene07217 | 0.819482 | 1.13E-52 | -1.69E-46 |
| MS.gene060586 | MS.gene07217 | 0.812306 | 4.53E-51 | -1.69E-46 |
| MS.gene060619 | MS.gene07217 | 0.81922 | 1.30E-52 | -1.69E-46 |
| MS.gene061145 | MS.gene07217 | 0.872782 | 2.44E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07217.t1 | MTR_1g088550 | 98.113 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 7.22e-73 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07217.t1 | AT3G62810 | 59.615 | 104 | 41 | 1 | 1 | 104 | 1 | 103 | 5.97e-40 | 128 |
| MS.gene07217.t1 | AT3G62810 | 59.615 | 104 | 41 | 1 | 1 | 104 | 1 | 103 | 5.97e-40 | 128 |
Find 33 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCCTGTGCAAGAAGCTTC+TGG | 0.299331 | 1.4:+70296197 | None:intergenic |
| CGTCTCTACCATGCTCGTTC+AGG | 0.394653 | 1.4:-70296158 | MS.gene07217:CDS |
| AATAATGATGCCGGCAGTTA+TGG | 0.401922 | 1.4:-70296127 | MS.gene07217:intron |
| GAAGAAATTATTCGTAAGTC+AGG | 0.412402 | 1.4:-70294293 | MS.gene07217:CDS |
| GACGAACTCAGCGGCCTCAT+TGG | 0.423868 | 1.4:+70296177 | None:intergenic |
| GCCGACGAATGATTTCTTAG+TGG | 0.431991 | 1.4:+70296303 | None:intergenic |
| GGCAAGTTCTGAGCGCGTAC+AGG | 0.438135 | 1.4:-70296339 | MS.gene07217:CDS |
| TTTCTTCTGATGGGATTTCA+AGG | 0.447514 | 1.4:+70294309 | None:intergenic |
| TACGAATAATTTCTTCTGAT+GGG | 0.470935 | 1.4:+70294300 | None:intergenic |
| TTACGAATAATTTCTTCTGA+TGG | 0.472202 | 1.4:+70294299 | None:intergenic |
| AAGCTTCTGGATCTCCGCTT+CGG | 0.492235 | 1.4:+70296210 | None:intergenic |
| TTTGTTGCAGTAGTGAAGCC+TGG | 0.498315 | 1.4:-70294353 | MS.gene07217:intron |
| TTCTTCTGATGGGATTTCAA+GGG | 0.527691 | 1.4:+70294310 | None:intergenic |
| GATCCAGAAGCTTCTTGCAC+AGG | 0.529541 | 1.4:-70296200 | MS.gene07217:CDS |
| AGGGCAGAGAGATGACGAAA+GGG | 0.544928 | 1.4:-70296360 | None:intergenic |
| GCTGAAGGGATCTGCGGCTG+AGG | 0.549347 | 1.4:-70296269 | MS.gene07217:CDS |
| TAGGGCAGAGAGATGACGAA+AGG | 0.559316 | 1.4:-70296361 | None:intergenic |
| CGGCGATCATCATATGCTGA+AGG | 0.569382 | 1.4:-70296284 | MS.gene07217:CDS |
| GCAAGTTCTGAGCGCGTACA+GGG | 0.570115 | 1.4:-70296338 | MS.gene07217:CDS |
| GTAAGCAGTTTGAAGAAAGC+AGG | 0.570580 | 1.4:-70296243 | MS.gene07217:CDS |
| CTTCTGGATCTCCGCTTCGG+AGG | 0.573783 | 1.4:+70296213 | None:intergenic |
| GCACCACTCAATAATGATGC+CGG | 0.582849 | 1.4:-70296136 | MS.gene07217:CDS |
| AGATAGAGTACCATAACTGC+CGG | 0.589190 | 1.4:+70296117 | None:intergenic |
| GGCGATCATCATATGCTGAA+GGG | 0.625903 | 1.4:-70296283 | MS.gene07217:CDS |
| GCTTCTTGCACAGGCCAATG+AGG | 0.635222 | 1.4:-70296191 | MS.gene07217:CDS |
| GCCACTAAGAAATCATTCGT+CGG | 0.643670 | 1.4:-70296304 | MS.gene07217:CDS |
| CTGCCGGCATCATTATTGAG+TGG | 0.657290 | 1.4:+70296133 | None:intergenic |
| AGTTCTGAGCGCGTACAGGG+CGG | 0.662417 | 1.4:-70296335 | MS.gene07217:CDS |
| AAGCCTGGAAAAGAGCATGC+TGG | 0.668843 | 1.4:-70294338 | MS.gene07217:CDS |
| CAGGAATGTCACCTCCGAAG+CGG | 0.670986 | 1.4:-70296224 | MS.gene07217:CDS |
| GAGTGGTGCCTGAACGAGCA+TGG | 0.673907 | 1.4:+70296150 | None:intergenic |
| TCATATGCTGAAGGGATCTG+CGG | 0.675279 | 1.4:-70296275 | MS.gene07217:CDS |
| CATGGTAGAGACGAACTCAG+CGG | 0.745728 | 1.4:+70296168 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTATTAATTTAAAAAATAC+AGG | - | chr1.4:70295472-70295491 | MS.gene07217:intron | 10.0% |
| !! | AAAAAACCTTGTAATAATAA+TGG | + | chr1.4:70295998-70296017 | None:intergenic | 15.0% |
| !! | AAAAACCTTGTAATAATAAT+GGG | + | chr1.4:70295997-70296016 | None:intergenic | 15.0% |
| !!! | ATAGTCCATTTTTATAAATT+GGG | - | chr1.4:70295285-70295304 | MS.gene07217:intron | 15.0% |
| !!! | TATAGTCCATTTTTATAAAT+TGG | - | chr1.4:70295284-70295303 | MS.gene07217:intron | 15.0% |
| !!! | TGTCAACTTATATATTTTTA+TGG | - | chr1.4:70295183-70295202 | MS.gene07217:intron | 15.0% |
| !! | AACTTAGTTTCAACTTAAAT+AGG | - | chr1.4:70295241-70295260 | MS.gene07217:intron | 20.0% |
| !! | AATTTGCAGATTATCAAATA+AGG | + | chr1.4:70295104-70295123 | None:intergenic | 20.0% |
| !! | ATTTGCAGATTATCAAATAA+GGG | + | chr1.4:70295103-70295122 | None:intergenic | 20.0% |
| !! | TATAAGTTCATAAGTGTTTA+TGG | - | chr1.4:70296093-70296112 | MS.gene07217:intron | 20.0% |
| !!! | ATTTCTAAAACAAGATATGA+TGG | - | chr1.4:70295545-70295564 | MS.gene07217:intron | 20.0% |
| !!! | TTTTTGTATAAGCTATAAGA+TGG | + | chr1.4:70294830-70294849 | None:intergenic | 20.0% |
| ! | GAAAACCCATTATTATTACA+AGG | - | chr1.4:70295989-70296008 | MS.gene07217:intron | 25.0% |
| ! | TACGAATAATTTCTTCTGAT+GGG | + | chr1.4:70296341-70296360 | None:intergenic | 25.0% |
| ! | TGAGACCCAATTTATAAAAA+TGG | + | chr1.4:70295293-70295312 | None:intergenic | 25.0% |
| ! | TTACGAATAATTTCTTCTGA+TGG | + | chr1.4:70296342-70296361 | None:intergenic | 25.0% |
| ! | TTTACTATCTTACTAGACTA+TGG | - | chr1.4:70295421-70295440 | MS.gene07217:intron | 25.0% |
| !! | AAGAACCATGAACTAATTTT+AGG | + | chr1.4:70295148-70295167 | None:intergenic | 25.0% |
| !! | AAGCAGAGAAAAGTTTATTT+TGG | - | chr1.4:70295715-70295734 | MS.gene07217:intron | 25.0% |
| !! | GTTCTATGTAATCATTGTTT+TGG | - | chr1.4:70294613-70294632 | MS.gene07217:intron | 25.0% |
| !!! | AGCAGAGAAAAGTTTATTTT+GGG | - | chr1.4:70295716-70295735 | MS.gene07217:intron | 25.0% |
| !!! | TACTTTTTGTTGTTTTCAAG+TGG | - | chr1.4:70294645-70294664 | MS.gene07217:intron | 25.0% |
| AAAGGAATTGATGAGTCAAA+TGG | - | chr1.4:70294989-70295008 | MS.gene07217:intron | 30.0% | |
| AATTGAGATGTACACATATG+TGG | + | chr1.4:70295501-70295520 | None:intergenic | 30.0% | |
| AGAAAGATTCAGAACTAGTT+TGG | + | chr1.4:70296247-70296266 | None:intergenic | 30.0% | |
| AGTGAAACAAATAATCGAAC+AGG | + | chr1.4:70294565-70294584 | None:intergenic | 30.0% | |
| CTCTTAGTTGTAAGTCAAAA+AGG | - | chr1.4:70296066-70296085 | MS.gene07217:intron | 30.0% | |
| CTTGGAGAGCTTATAAAAAT+AGG | + | chr1.4:70294794-70294813 | None:intergenic | 30.0% | |
| GAAACAGTTTATGACATGTT+CGG | - | chr1.4:70294756-70294775 | MS.gene07217:intron | 30.0% | |
| GAAGAAATTATTCGTAAGTC+AGG | - | chr1.4:70296345-70296364 | MS.gene07217:CDS | 30.0% | |
| GGTGTGTTTAAATTGGATTA+TGG | - | chr1.4:70294734-70294753 | MS.gene07217:intron | 30.0% | |
| GTTCGATTATTTGTTTCACT+TGG | - | chr1.4:70294565-70294584 | MS.gene07217:intron | 30.0% | |
| TATGAGTCCTTCTTAACTAA+GGG | - | chr1.4:70294713-70294732 | MS.gene07217:intron | 30.0% | |
| TCAGCAGGTAATTATAGAAA+GGG | + | chr1.4:70295370-70295389 | None:intergenic | 30.0% | |
| TGAGAAGTTTATGCAAACAT+GGG | - | chr1.4:70295387-70295406 | MS.gene07217:intron | 30.0% | |
| TTATGAGTCCTTCTTAACTA+AGG | - | chr1.4:70294712-70294731 | MS.gene07217:intron | 30.0% | |
| ! | AACTAAGGGTGTGTTTAAAT+TGG | - | chr1.4:70294727-70294746 | MS.gene07217:intron | 30.0% |
| ! | AACTAATTTTAGGCTCTGTT+TGG | + | chr1.4:70295138-70295157 | None:intergenic | 30.0% |
| ! | GATTTGAGTTAAGGGATTAA+AGG | - | chr1.4:70294971-70294990 | MS.gene07217:intron | 30.0% |
| ! | GTTTCTGAAGAAAATAAGAC+AGG | - | chr1.4:70295930-70295949 | MS.gene07217:intron | 30.0% |
| ! | TTGATTACACCATTTCTAGA+TGG | + | chr1.4:70295585-70295604 | None:intergenic | 30.0% |
| !! | ATTGTTGTTTAGGATCAGTT+TGG | - | chr1.4:70294676-70294695 | MS.gene07217:intron | 30.0% |
| !! | GAGAGTGTCTGAAAAAATTT+AGG | - | chr1.4:70296127-70296146 | MS.gene07217:intron | 30.0% |
| !!! | GATGGTTTTATAAGCTATCT+TGG | + | chr1.4:70294812-70294831 | None:intergenic | 30.0% |
| AAACACACCCTTAGTTAAGA+AGG | + | chr1.4:70294723-70294742 | None:intergenic | 35.0% | |
| AACTTCTCAACAAGCACTTA+AGG | + | chr1.4:70296034-70296053 | None:intergenic | 35.0% | |
| AAGTTTATGCAAACATGGGT+TGG | - | chr1.4:70295391-70295410 | MS.gene07217:intron | 35.0% | |
| AGAAGGACTCATAAGCTAAA+AGG | + | chr1.4:70294706-70294725 | None:intergenic | 35.0% | |
| ATCAATGATAAGCCCTTACT+GGG | - | chr1.4:70294911-70294930 | MS.gene07217:intron | 35.0% | |
| ATTGATGAGTCAAATGGTCT+AGG | - | chr1.4:70294995-70295014 | MS.gene07217:intron | 35.0% | |
| CAGAGCCTAAAATTAGTTCA+TGG | - | chr1.4:70295140-70295159 | MS.gene07217:intron | 35.0% | |
| CTCAGCAGGTAATTATAGAA+AGG | + | chr1.4:70295371-70295390 | None:intergenic | 35.0% | |
| CTGAGAAGTTTATGCAAACA+TGG | - | chr1.4:70295386-70295405 | MS.gene07217:intron | 35.0% | |
| GAAACAAATAATCGAACAGG+TGG | + | chr1.4:70294562-70294581 | None:intergenic | 35.0% | |
| TACCTTCATCCATCTAGAAA+TGG | - | chr1.4:70295573-70295592 | MS.gene07217:intron | 35.0% | |
| TATCAATGATAAGCCCTTAC+TGG | - | chr1.4:70294910-70294929 | MS.gene07217:intron | 35.0% | |
| TTCTTCTGATGGGATTTCAA+GGG | + | chr1.4:70296331-70296350 | None:intergenic | 35.0% | |
| TTGATGAGTCAAATGGTCTA+GGG | - | chr1.4:70294996-70295015 | MS.gene07217:intron | 35.0% | |
| TTTCTTCTGATGGGATTTCA+AGG | + | chr1.4:70296332-70296351 | None:intergenic | 35.0% | |
| ! | TTTGACTTACAACTAAGAGC+TGG | + | chr1.4:70296065-70296084 | None:intergenic | 35.0% |
| !! | AGCTCAACTGATTTGAGTTA+AGG | - | chr1.4:70294962-70294981 | MS.gene07217:intron | 35.0% |
| !! | GCTCAACTGATTTGAGTTAA+GGG | - | chr1.4:70294963-70294982 | MS.gene07217:intron | 35.0% |
| !! | GGCAGTAAACATTGTTGTTT+AGG | - | chr1.4:70294666-70294685 | MS.gene07217:intron | 35.0% |
| !!! | CACAGTTTTTTTGAGGAACT+AGG | - | chr1.4:70295311-70295330 | MS.gene07217:intron | 35.0% |
| !!! | TTTTTTGAGGAACTAGGAAC+TGG | - | chr1.4:70295317-70295336 | MS.gene07217:intron | 35.0% |
| AATAATGATGCCGGCAGTTA+TGG | - | chr1.4:70294511-70294530 | MS.gene07217:intron | 40.0% | |
| CTCTAGCAAACATCTTTGAG+AGG | - | chr1.4:70295654-70295673 | MS.gene07217:intron | 40.0% | |
| GCCACTAAGAAATCATTCGT+CGG | - | chr1.4:70294334-70294353 | MS.gene07217:CDS | 40.0% | |
| GTAAGCAGTTTGAAGAAAGC+AGG | - | chr1.4:70294395-70294414 | MS.gene07217:intron | 40.0% | |
| GTTTGCATAAACTTCTCAGC+AGG | + | chr1.4:70295385-70295404 | None:intergenic | 40.0% | |
| TATGGACATCTGACATGACA+CGG | - | chr1.4:70295439-70295458 | MS.gene07217:intron | 40.0% | |
| ! | AGATAGAGTACCATAACTGC+CGG | + | chr1.4:70294524-70294543 | None:intergenic | 40.0% |
| ! | CACCATTTCTAGATGGATGA+AGG | + | chr1.4:70295578-70295597 | None:intergenic | 40.0% |
| ! | GAGTATCCATAGAGTGTCTA+AGG | - | chr1.4:70295685-70295704 | MS.gene07217:intron | 40.0% |
| ! | TTAGTATTTTGCTCCGTGTC+AGG | + | chr1.4:70295029-70295048 | None:intergenic | 40.0% |
| !!! | TGGGTCTCACAGTTTTTTTG+AGG | - | chr1.4:70295304-70295323 | MS.gene07217:intron | 40.0% |
| AGCACACCTTAGACACTCTA+TGG | + | chr1.4:70295694-70295713 | None:intergenic | 45.0% | |
| ATGATAAGCCCTTACTGGGA+TGG | - | chr1.4:70294915-70294934 | MS.gene07217:intron | 45.0% | |
| GACACTCTATGGATACTCCT+TGG | + | chr1.4:70295683-70295702 | None:intergenic | 45.0% | |
| GCACCACTCAATAATGATGC+CGG | - | chr1.4:70294502-70294521 | MS.gene07217:intron | 45.0% | |
| GCCGACGAATGATTTCTTAG+TGG | + | chr1.4:70294338-70294357 | None:intergenic | 45.0% | |
| GGCGATCATCATATGCTGAA+GGG | - | chr1.4:70294355-70294374 | MS.gene07217:intron | 45.0% | |
| TCATATGCTGAAGGGATCTG+CGG | - | chr1.4:70294363-70294382 | MS.gene07217:intron | 45.0% | |
| TGATAAGCCCTTACTGGGAT+GGG | - | chr1.4:70294916-70294935 | MS.gene07217:intron | 45.0% | |
| TTTGTTGCAGTAGTGAAGCC+TGG | - | chr1.4:70296285-70296304 | MS.gene07217:CDS | 45.0% | |
| ! | ACATCTTTGAGAGGTGACCA+AGG | - | chr1.4:70295663-70295682 | MS.gene07217:intron | 45.0% |
| AAGCTTCTGGATCTCCGCTT+CGG | + | chr1.4:70294431-70294450 | None:intergenic | 50.0% | |
| ATAAGCCCTTACTGGGATGG+GGG | - | chr1.4:70294918-70294937 | MS.gene07217:intron | 50.0% | |
| CATGGTAGAGACGAACTCAG+CGG | + | chr1.4:70294473-70294492 | None:intergenic | 50.0% | |
| CGGCGATCATCATATGCTGA+AGG | - | chr1.4:70294354-70294373 | MS.gene07217:intron | 50.0% | |
| CTAGGGTTCAAGTCCTGACA+CGG | - | chr1.4:70295013-70295032 | MS.gene07217:intron | 50.0% | |
| CTGCCGGCATCATTATTGAG+TGG | + | chr1.4:70294508-70294527 | None:intergenic | 50.0% | |
| GAGGAACTAGGAACTGGAAG+TGG | - | chr1.4:70295323-70295342 | MS.gene07217:intron | 50.0% | |
| GAGGACACACCTAATCTCAG+AGG | - | chr1.4:70295812-70295831 | MS.gene07217:intron | 50.0% | |
| GATAAGCCCTTACTGGGATG+GGG | - | chr1.4:70294917-70294936 | MS.gene07217:intron | 50.0% | |
| GATCCAGAAGCTTCTTGCAC+AGG | - | chr1.4:70294438-70294457 | MS.gene07217:intron | 50.0% | |
| ! | AAGCCTGGAAAAGAGCATGC+TGG | - | chr1.4:70296300-70296319 | MS.gene07217:CDS | 50.0% |
| !! | GCACAGAAGCCTCTGAGATT+AGG | + | chr1.4:70295824-70295843 | None:intergenic | 50.0% |
| CAGGAATGTCACCTCCGAAG+CGG | - | chr1.4:70294414-70294433 | MS.gene07217:intron | 55.0% | |
| CGTCTCTACCATGCTCGTTC+AGG | - | chr1.4:70294480-70294499 | MS.gene07217:intron | 55.0% | |
| CTGACATGACACGGACGTGT+CGG | - | chr1.4:70295448-70295467 | MS.gene07217:intron | 55.0% | |
| GCGTCGTACGAGTTTCGTAC+AGG | - | chr1.4:70295762-70295781 | MS.gene07217:intron | 55.0% | |
| GCTTCTTGCACAGGCCAATG+AGG | - | chr1.4:70294447-70294466 | MS.gene07217:intron | 55.0% | |
| TGGCCTGTGCAAGAAGCTTC+TGG | + | chr1.4:70294444-70294463 | None:intergenic | 55.0% | |
| ! | GCACCAGCATGCTCTTTTCC+AGG | + | chr1.4:70296306-70296325 | None:intergenic | 55.0% |
| !! | GCAAGTTCTGAGCGCGTACA+GGG | - | chr1.4:70294300-70294319 | MS.gene07217:CDS | 55.0% |
| AGTGACGCGTGTCGAACACG+AGG | - | chr1.4:70295793-70295812 | MS.gene07217:intron | 60.0% | |
| CTTCTGGATCTCCGCTTCGG+AGG | + | chr1.4:70294428-70294447 | None:intergenic | 60.0% | |
| GACGAACTCAGCGGCCTCAT+TGG | + | chr1.4:70294464-70294483 | None:intergenic | 60.0% | |
| GAGTGGTGCCTGAACGAGCA+TGG | + | chr1.4:70294491-70294510 | None:intergenic | 60.0% | |
| !! | AGTTCTGAGCGCGTACAGGG+CGG | - | chr1.4:70294303-70294322 | MS.gene07217:CDS | 60.0% |
| !! | GGCAAGTTCTGAGCGCGTAC+AGG | - | chr1.4:70294299-70294318 | MS.gene07217:CDS | 60.0% |
| AGCCCTTACTGGGATGGGGG+TGG | - | chr1.4:70294921-70294940 | MS.gene07217:intron | 65.0% | |
| CCCCACCCCCATCCCAGTAA+GGG | + | chr1.4:70294926-70294945 | None:intergenic | 65.0% | |
| CCCTTACTGGGATGGGGGTG+GGG | - | chr1.4:70294923-70294942 | MS.gene07217:intron | 65.0% | |
| CCTTACTGGGATGGGGGTGG+GGG | - | chr1.4:70294924-70294943 | MS.gene07217:intron | 65.0% | |
| GATGGGGGTGGGGGTGGTTA+GGG | - | chr1.4:70294933-70294952 | MS.gene07217:intron | 65.0% | |
| GCCCTTACTGGGATGGGGGT+GGG | - | chr1.4:70294922-70294941 | MS.gene07217:intron | 65.0% | |
| GCTGAAGGGATCTGCGGCTG+AGG | - | chr1.4:70294369-70294388 | MS.gene07217:intron | 65.0% | |
| GGGTGGGGGTGGTTAGGGTT+GGG | - | chr1.4:70294938-70294957 | MS.gene07217:intron | 65.0% | |
| CCCCCACCCCCATCCCAGTA+AGG | + | chr1.4:70294927-70294946 | None:intergenic | 70.0% | |
| GGATGGGGGTGGGGGTGGTT+AGG | - | chr1.4:70294932-70294951 | MS.gene07217:intron | 70.0% | |
| GGGGTGGGGGTGGTTAGGGT+TGG | - | chr1.4:70294937-70294956 | MS.gene07217:intron | 70.0% | |
| TACTGGGATGGGGGTGGGGG+TGG | - | chr1.4:70294927-70294946 | MS.gene07217:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 70294289 | 70296371 | 70294289 | ID=MS.gene07217 |
| chr1.4 | mRNA | 70294289 | 70296371 | 70294289 | ID=MS.gene07217.t1;Parent=MS.gene07217 |
| chr1.4 | exon | 70296128 | 70296371 | 70296128 | ID=MS.gene07217.t1.exon1;Parent=MS.gene07217.t1 |
| chr1.4 | CDS | 70296128 | 70296371 | 70296128 | ID=cds.MS.gene07217.t1;Parent=MS.gene07217.t1 |
| chr1.4 | exon | 70294289 | 70294365 | 70294289 | ID=MS.gene07217.t1.exon2;Parent=MS.gene07217.t1 |
| chr1.4 | CDS | 70294289 | 70294365 | 70294289 | ID=cds.MS.gene07217.t1;Parent=MS.gene07217.t1 |
| Gene Sequence |
| Protein sequence |
