Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20740.t1 | XP_003591517.1 | 98.3 | 119 | 2 | 0 | 1 | 119 | 1 | 119 | 6.00E-57 | 229.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20740.t1 | Q9M9W1 | 88.7 | 115 | 13 | 0 | 5 | 119 | 10 | 124 | 5.9e-53 | 208.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20740.t1 | G7IF49 | 98.3 | 119 | 2 | 0 | 1 | 119 | 1 | 119 | 4.3e-57 | 229.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene20740 | -0.813223 | 2.85E-51 | -1.69E-46 |
| MS.gene049255 | MS.gene20740 | 0.863794 | 1.93E-64 | -1.69E-46 |
| MS.gene049340 | MS.gene20740 | 0.828638 | 8.04E-55 | -1.69E-46 |
| MS.gene049341 | MS.gene20740 | 0.85137 | 9.28E-61 | -1.69E-46 |
| MS.gene049580 | MS.gene20740 | 0.82216 | 2.75E-53 | -1.69E-46 |
| MS.gene049756 | MS.gene20740 | 0.809743 | 1.63E-50 | -1.69E-46 |
| MS.gene049821 | MS.gene20740 | 0.808014 | 3.81E-50 | -1.69E-46 |
| MS.gene049887 | MS.gene20740 | 0.827593 | 1.44E-54 | -1.69E-46 |
| MS.gene050277 | MS.gene20740 | 0.907027 | 7.89E-81 | -1.69E-46 |
| MS.gene050290 | MS.gene20740 | 0.819799 | 9.60E-53 | -1.69E-46 |
| MS.gene050303 | MS.gene20740 | 0.82624 | 3.02E-54 | -1.69E-46 |
| MS.gene050320 | MS.gene20740 | 0.856537 | 3.01E-62 | -1.69E-46 |
| MS.gene050437 | MS.gene20740 | 0.832247 | 1.05E-55 | -1.69E-46 |
| MS.gene050689 | MS.gene20740 | 0.820498 | 6.64E-53 | -1.69E-46 |
| MS.gene050752 | MS.gene20740 | 0.859087 | 5.27E-63 | -1.69E-46 |
| MS.gene050807 | MS.gene20740 | 0.818326 | 2.08E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene20740 | 0.889936 | 1.55E-73 | -1.69E-46 |
| MS.gene050916 | MS.gene20740 | 0.836642 | 8.30E-57 | -1.69E-46 |
| MS.gene050955 | MS.gene20740 | 0.837025 | 6.63E-57 | -1.69E-46 |
| MS.gene051003 | MS.gene20740 | 0.807 | 6.26E-50 | -1.69E-46 |
| MS.gene051063 | MS.gene20740 | 0.849823 | 2.52E-60 | -1.69E-46 |
| MS.gene051233 | MS.gene20740 | 0.815042 | 1.13E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene20740 | 0.81726 | 3.62E-52 | -1.69E-46 |
| MS.gene051241 | MS.gene20740 | 0.807258 | 5.52E-50 | -1.69E-46 |
| MS.gene051243 | MS.gene20740 | 0.812019 | 5.23E-51 | -1.69E-46 |
| MS.gene051245 | MS.gene20740 | 0.817283 | 3.57E-52 | -1.69E-46 |
| MS.gene051328 | MS.gene20740 | 0.839433 | 1.59E-57 | -1.69E-46 |
| MS.gene051330 | MS.gene20740 | 0.891534 | 3.64E-74 | -1.69E-46 |
| MS.gene051343 | MS.gene20740 | 0.833158 | 6.26E-56 | -1.69E-46 |
| MS.gene05134 | MS.gene20740 | 0.859338 | 4.43E-63 | -1.69E-46 |
| MS.gene051451 | MS.gene20740 | 0.862176 | 6.10E-64 | -1.69E-46 |
| MS.gene051633 | MS.gene20740 | 0.803708 | 3.06E-49 | -1.69E-46 |
| MS.gene051676 | MS.gene20740 | 0.804604 | 1.99E-49 | -1.69E-46 |
| MS.gene051687 | MS.gene20740 | 0.819201 | 1.32E-52 | -1.69E-46 |
| MS.gene051700 | MS.gene20740 | 0.831601 | 1.52E-55 | -1.69E-46 |
| MS.gene051746 | MS.gene20740 | 0.896219 | 4.55E-76 | -1.69E-46 |
| MS.gene051748 | MS.gene20740 | 0.899073 | 2.84E-77 | -1.69E-46 |
| MS.gene051756 | MS.gene20740 | 0.828225 | 1.01E-54 | -1.69E-46 |
| MS.gene051757 | MS.gene20740 | 0.804905 | 1.73E-49 | -1.69E-46 |
| MS.gene051850 | MS.gene20740 | 0.867461 | 1.35E-65 | -1.69E-46 |
| MS.gene051885 | MS.gene20740 | 0.823046 | 1.71E-53 | -1.69E-46 |
| MS.gene05188 | MS.gene20740 | 0.839193 | 1.83E-57 | -1.69E-46 |
| MS.gene051903 | MS.gene20740 | 0.925524 | 1.63E-90 | -1.69E-46 |
| MS.gene051975 | MS.gene20740 | 0.833428 | 5.36E-56 | -1.69E-46 |
| MS.gene052133 | MS.gene20740 | 0.865169 | 7.18E-65 | -1.69E-46 |
| MS.gene052202 | MS.gene20740 | 0.810523 | 1.10E-50 | -1.69E-46 |
| MS.gene052286 | MS.gene20740 | 0.826429 | 2.73E-54 | -1.69E-46 |
| MS.gene052302 | MS.gene20740 | 0.839829 | 1.25E-57 | -1.69E-46 |
| MS.gene052335 | MS.gene20740 | 0.810549 | 1.09E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene20740 | 0.829542 | 4.86E-55 | -1.69E-46 |
| MS.gene052879 | MS.gene20740 | 0.832128 | 1.13E-55 | -1.69E-46 |
| MS.gene052880 | MS.gene20740 | 0.81765 | 2.95E-52 | -1.69E-46 |
| MS.gene052947 | MS.gene20740 | 0.929491 | 6.44E-93 | -1.69E-46 |
| MS.gene053058 | MS.gene20740 | 0.837501 | 5.01E-57 | -1.69E-46 |
| MS.gene053109 | MS.gene20740 | 0.874324 | 7.38E-68 | -1.69E-46 |
| MS.gene053437 | MS.gene20740 | 0.801021 | 1.10E-48 | -1.69E-46 |
| MS.gene053563 | MS.gene20740 | 0.802145 | 6.45E-49 | -1.69E-46 |
| MS.gene053564 | MS.gene20740 | 0.806184 | 9.30E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene20740 | 0.835913 | 1.27E-56 | -1.69E-46 |
| MS.gene053590 | MS.gene20740 | 0.814785 | 1.29E-51 | -1.69E-46 |
| MS.gene053952 | MS.gene20740 | 0.886835 | 2.42E-72 | -1.69E-46 |
| MS.gene054403 | MS.gene20740 | 0.858759 | 6.61E-63 | -1.69E-46 |
| MS.gene05469 | MS.gene20740 | 0.81902 | 1.45E-52 | -1.69E-46 |
| MS.gene054937 | MS.gene20740 | 0.861205 | 1.21E-63 | -1.69E-46 |
| MS.gene055162 | MS.gene20740 | 0.846345 | 2.30E-59 | -1.69E-46 |
| MS.gene055424 | MS.gene20740 | 0.85528 | 7.02E-62 | -1.69E-46 |
| MS.gene055468 | MS.gene20740 | 0.802058 | 6.72E-49 | -1.69E-46 |
| MS.gene055555 | MS.gene20740 | 0.82425 | 8.93E-54 | -1.69E-46 |
| MS.gene055580 | MS.gene20740 | -0.808269 | 3.37E-50 | -1.69E-46 |
| MS.gene055591 | MS.gene20740 | -0.829966 | 3.83E-55 | -1.69E-46 |
| MS.gene055808 | MS.gene20740 | 0.838751 | 2.39E-57 | -1.69E-46 |
| MS.gene056043 | MS.gene20740 | -0.824073 | 9.84E-54 | -1.69E-46 |
| MS.gene056075 | MS.gene20740 | 0.893441 | 6.27E-75 | -1.69E-46 |
| MS.gene056091 | MS.gene20740 | 0.846922 | 1.60E-59 | -1.69E-46 |
| MS.gene056215 | MS.gene20740 | 0.82067 | 6.07E-53 | -1.69E-46 |
| MS.gene056432 | MS.gene20740 | 0.841176 | 5.57E-58 | -1.69E-46 |
| MS.gene056580 | MS.gene20740 | 0.826489 | 2.64E-54 | -1.69E-46 |
| MS.gene056601 | MS.gene20740 | 0.857421 | 1.65E-62 | -1.69E-46 |
| MS.gene056631 | MS.gene20740 | 0.912195 | 2.57E-83 | -1.69E-46 |
| MS.gene056760 | MS.gene20740 | 0.821414 | 4.09E-53 | -1.69E-46 |
| MS.gene056986 | MS.gene20740 | 0.829461 | 5.08E-55 | -1.69E-46 |
| MS.gene057057 | MS.gene20740 | 0.848541 | 5.74E-60 | -1.69E-46 |
| MS.gene057094 | MS.gene20740 | 0.90084 | 4.89E-78 | -1.69E-46 |
| MS.gene057140 | MS.gene20740 | 0.815165 | 1.06E-51 | -1.69E-46 |
| MS.gene057206 | MS.gene20740 | 0.827112 | 1.87E-54 | -1.69E-46 |
| MS.gene057234 | MS.gene20740 | 0.870139 | 1.83E-66 | -1.69E-46 |
| MS.gene057694 | MS.gene20740 | 0.808835 | 2.55E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene20740 | 0.906204 | 1.90E-80 | -1.69E-46 |
| MS.gene05781 | MS.gene20740 | 0.825427 | 4.72E-54 | -1.69E-46 |
| MS.gene057999 | MS.gene20740 | 0.808612 | 2.84E-50 | -1.69E-46 |
| MS.gene058054 | MS.gene20740 | 0.810424 | 1.16E-50 | -1.69E-46 |
| MS.gene058055 | MS.gene20740 | 0.845552 | 3.78E-59 | -1.69E-46 |
| MS.gene058074 | MS.gene20740 | 0.820716 | 5.92E-53 | -1.69E-46 |
| MS.gene058084 | MS.gene20740 | 0.810978 | 8.81E-51 | -1.69E-46 |
| MS.gene05809 | MS.gene20740 | 0.825068 | 5.73E-54 | -1.69E-46 |
| MS.gene058216 | MS.gene20740 | 0.812335 | 4.46E-51 | -1.69E-46 |
| MS.gene058238 | MS.gene20740 | 0.863917 | 1.77E-64 | -1.69E-46 |
| MS.gene058364 | MS.gene20740 | 0.81079 | 9.68E-51 | -1.69E-46 |
| MS.gene058852 | MS.gene20740 | 0.829885 | 4.01E-55 | -1.69E-46 |
| MS.gene058906 | MS.gene20740 | 0.879167 | 1.55E-69 | -1.69E-46 |
| MS.gene059146 | MS.gene20740 | 0.805251 | 1.46E-49 | -1.69E-46 |
| MS.gene059171 | MS.gene20740 | 0.832205 | 1.08E-55 | -1.69E-46 |
| MS.gene059227 | MS.gene20740 | 0.833311 | 5.74E-56 | -1.69E-46 |
| MS.gene059726 | MS.gene20740 | 0.821633 | 3.64E-53 | -1.69E-46 |
| MS.gene05978 | MS.gene20740 | 0.821264 | 4.43E-53 | -1.69E-46 |
| MS.gene059830 | MS.gene20740 | 0.805153 | 1.53E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene20740 | 0.83754 | 4.89E-57 | -1.69E-46 |
| MS.gene06001 | MS.gene20740 | 0.952597 | 1.72E-110 | -1.69E-46 |
| MS.gene06011 | MS.gene20740 | 0.841811 | 3.79E-58 | -1.69E-46 |
| MS.gene060429 | MS.gene20740 | 0.867852 | 1.01E-65 | -1.69E-46 |
| MS.gene060463 | MS.gene20740 | 0.8393 | 1.72E-57 | -1.69E-46 |
| MS.gene060465 | MS.gene20740 | 0.845751 | 3.34E-59 | -1.69E-46 |
| MS.gene060586 | MS.gene20740 | 0.806631 | 7.49E-50 | -1.69E-46 |
| MS.gene060763 | MS.gene20740 | 0.830314 | 3.15E-55 | -1.69E-46 |
| MS.gene060830 | MS.gene20740 | 0.806461 | 8.13E-50 | -1.69E-46 |
| MS.gene060917 | MS.gene20740 | 0.854724 | 1.02E-61 | -1.69E-46 |
| MS.gene061145 | MS.gene20740 | 0.861232 | 1.19E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20740.t1 | MTR_1g088450 | 98.319 | 119 | 2 | 0 | 1 | 119 | 1 | 119 | 5.80e-83 | 238 |
| MS.gene20740.t1 | MTR_1g083430 | 89.076 | 119 | 12 | 1 | 2 | 119 | 7 | 125 | 1.68e-63 | 189 |
| MS.gene20740.t1 | MTR_7g112770 | 94.444 | 108 | 6 | 0 | 12 | 119 | 17 | 124 | 1.15e-61 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20740.t1 | AT3G05560 | 87.931 | 116 | 14 | 0 | 4 | 119 | 9 | 124 | 5.82e-63 | 187 |
| MS.gene20740.t1 | AT3G05560 | 87.931 | 116 | 14 | 0 | 4 | 119 | 9 | 124 | 5.82e-63 | 187 |
| MS.gene20740.t1 | AT3G05560 | 87.931 | 116 | 14 | 0 | 4 | 119 | 9 | 124 | 5.82e-63 | 187 |
| MS.gene20740.t1 | AT5G27770 | 86.735 | 98 | 13 | 0 | 11 | 108 | 16 | 113 | 1.42e-49 | 154 |
| MS.gene20740.t1 | AT1G02830 | 75.229 | 109 | 27 | 0 | 2 | 110 | 9 | 117 | 9.39e-46 | 144 |
Find 27 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCCTGGAGAAGTTTCTTC+AGG | 0.314117 | 1.2:-66193983 | MS.gene20740:CDS |
| GCCAGTTGAGGATAAGATTA+TGG | 0.328511 | 1.2:-66194013 | MS.gene20740:CDS |
| ATAGATATTGCGGTCCTTGT+TGG | 0.377160 | 1.2:+66192951 | None:intergenic |
| TCCATAATCTTATCCTCAAC+TGG | 0.404476 | 1.2:+66194012 | None:intergenic |
| CGGAGTGAAGGGTAAGAAGA+AGG | 0.409364 | 1.2:-66194064 | MS.gene20740:CDS |
| ATCGGAGGTAACAGTGATCT+TGG | 0.422181 | 1.2:+66193894 | None:intergenic |
| GATTATGGACATCGCTTCCC+TGG | 0.434039 | 1.2:-66193998 | MS.gene20740:CDS |
| CGCGAAAATGAGCGGAGTGA+AGG | 0.462475 | 1.2:-66194076 | None:intergenic |
| TCTCCTGAAGAAACTTCTCC+AGG | 0.463361 | 1.2:+66193980 | None:intergenic |
| AAAAGCACAATGTGAGGGAT+TGG | 0.474548 | 1.2:-66192990 | MS.gene20740:CDS |
| CTTCAACATTGCTGAGAATG+AGG | 0.480373 | 1.2:-66192917 | MS.gene20740:CDS |
| CCGATAGCAATTTCTCCAAA+AGG | 0.482446 | 1.2:-66193876 | MS.gene20740:intron |
| ATTAAAGTTGGTGGTAAAGC+TGG | 0.482585 | 1.2:-66193955 | MS.gene20740:CDS |
| GCGAAAATGAGCGGAGTGAA+GGG | 0.509201 | 1.2:-66194075 | None:intergenic |
| CTTCAGGAGAGGATTAAAGT+TGG | 0.530224 | 1.2:-66193967 | MS.gene20740:CDS |
| CAGGAGAGGATTAAAGTTGG+TGG | 0.545199 | 1.2:-66193964 | MS.gene20740:CDS |
| GGTGGTAAAGCTGGTGCTCT+CGG | 0.555561 | 1.2:-66193946 | MS.gene20740:CDS |
| CGATTGCGCGAAGCCAGTTG+AGG | 0.561050 | 1.2:-66194025 | MS.gene20740:CDS |
| TGGAGAAGTTTCTTCAGGAG+AGG | 0.565476 | 1.2:-66193978 | MS.gene20740:CDS |
| GGAGTGAAGGGTAAGAAGAA+GGG | 0.572006 | 1.2:-66194063 | MS.gene20740:CDS |
| ATCTCAACTCATAGATATTG+CGG | 0.582807 | 1.2:+66192941 | None:intergenic |
| AGTCTCAACGCGAAAATGAG+CGG | 0.596462 | 1.2:-66194084 | None:intergenic |
| TTTGGAGAAATTGCTATCGG+AGG | 0.603460 | 1.2:+66193879 | None:intergenic |
| TCGTGTTATTGCATCCAACA+AGG | 0.613064 | 1.2:-66192965 | MS.gene20740:CDS |
| TTCAACATTGCTGAGAATGA+GGG | 0.613248 | 1.2:-66192916 | MS.gene20740:CDS |
| CTCCTGAAGAAACTTCTCCA+GGG | 0.621359 | 1.2:+66193981 | None:intergenic |
| TTTGTCACGAGTAACAGTAA+CGG | 0.687075 | 1.2:+66193918 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTATGTCTTAATTTTTTT+TGG | - | chr1.2:66193845-66193864 | MS.gene20740:intron | 15.0% |
| !! | ATTTGACATTATTATGATTC+TGG | - | chr1.2:66193725-66193744 | MS.gene20740:intron | 20.0% |
| !!! | TATTTGTTGATTAATGTGTT+AGG | - | chr1.2:66193132-66193151 | MS.gene20740:intron | 20.0% |
| ! | AAAAATAGTTAAACTGAGCT+GGG | + | chr1.2:66193776-66193795 | None:intergenic | 25.0% |
| ! | ATATGCTTCATGTAATTGTA+TGG | - | chr1.2:66193281-66193300 | MS.gene20740:intron | 25.0% |
| ! | ATATTTAGTGTATGTTTGGA+TGG | - | chr1.2:66193332-66193351 | MS.gene20740:intron | 25.0% |
| ! | TAAAAATAGTTAAACTGAGC+TGG | + | chr1.2:66193777-66193796 | None:intergenic | 25.0% |
| ! | TATGCTTCATGTAATTGTAT+GGG | - | chr1.2:66193282-66193301 | MS.gene20740:intron | 25.0% |
| ! | TATTTAGTGTATGTTTGGAT+GGG | - | chr1.2:66193333-66193352 | MS.gene20740:intron | 25.0% |
| ! | TCGTATATTTAGTGTATGTT+TGG | - | chr1.2:66193328-66193347 | MS.gene20740:intron | 25.0% |
| ATACAAGTCTTCTTCTTCTT+TGG | - | chr1.2:66193868-66193887 | MS.gene20740:intron | 30.0% | |
| ATCTCAACTCATAGATATTG+CGG | + | chr1.2:66194031-66194050 | None:intergenic | 30.0% | |
| CATGTGAACATTTCATTTAC+AGG | + | chr1.2:66193188-66193207 | None:intergenic | 30.0% | |
| CATGTGTTTGAGTAATTATG+TGG | - | chr1.2:66193204-66193223 | MS.gene20740:intron | 30.0% | |
| GTCAAATTCTATTCACATAC+AGG | + | chr1.2:66193712-66193731 | None:intergenic | 30.0% | |
| ! | AAGATGAAGAAGTTACCTTT+TGG | + | chr1.2:66193111-66193130 | None:intergenic | 30.0% |
| ! | ACTGTAAGTCACCATAATTT+TGG | + | chr1.2:66193407-66193426 | None:intergenic | 30.0% |
| ! | CTGTAAGTCACCATAATTTT+GGG | + | chr1.2:66193406-66193425 | None:intergenic | 30.0% |
| !!! | TTTTGTTATTTTCTACCGTG+AGG | - | chr1.2:66193514-66193533 | MS.gene20740:intron | 30.0% |
| ACAGGAATACTAGACAATAG+TGG | + | chr1.2:66193694-66193713 | None:intergenic | 35.0% | |
| AGTTGACTACACACATCAAT+TGG | + | chr1.2:66193448-66193467 | None:intergenic | 35.0% | |
| ATTGAATATTGAGACAGTGC+TGG | - | chr1.2:66193252-66193271 | MS.gene20740:intron | 35.0% | |
| GGACAAAAATAATCACACGA+AGG | + | chr1.2:66193905-66193924 | None:intergenic | 35.0% | |
| TCCATAATCTTATCCTCAAC+TGG | + | chr1.2:66192960-66192979 | None:intergenic | 35.0% | |
| TGTCATGAGAATCCTTAAGT+TGG | + | chr1.2:66193623-66193642 | None:intergenic | 35.0% | |
| TTCAACATTGCTGAGAATGA+GGG | - | chr1.2:66194053-66194072 | MS.gene20740:CDS | 35.0% | |
| TTTGTCACGAGTAACAGTAA+CGG | + | chr1.2:66193054-66193073 | None:intergenic | 35.0% | |
| ! | ACTTGAAAAAGCACAATGTG+AGG | - | chr1.2:66193973-66193992 | MS.gene20740:CDS | 35.0% |
| ! | ATGATTTGTGTAAATGGTCC+TGG | - | chr1.2:66193665-66193684 | MS.gene20740:intron | 35.0% |
| ! | CGTAGGTTTTCCCAAAATTA+TGG | - | chr1.2:66193393-66193412 | MS.gene20740:intron | 35.0% |
| ! | CTTGAAAAAGCACAATGTGA+GGG | - | chr1.2:66193974-66193993 | MS.gene20740:CDS | 35.0% |
| ! | GCGAGTATGATTTGTGTAAA+TGG | - | chr1.2:66193659-66193678 | MS.gene20740:intron | 35.0% |
| !! | ATGTGGCTTTGAAATGTTGA+TGG | - | chr1.2:66193221-66193240 | MS.gene20740:intron | 35.0% |
| !! | ATTAAAGTTGGTGGTAAAGC+TGG | - | chr1.2:66193014-66193033 | MS.gene20740:CDS | 35.0% |
| !! | CCTTTTGGAGAAATTGCTAT+CGG | + | chr1.2:66193096-66193115 | None:intergenic | 35.0% |
| !!! | GTGCTTTTTCAAGTACTTCT+TGG | + | chr1.2:66193967-66193986 | None:intergenic | 35.0% |
| AGGTCTAGTTGTTGCTGTAT+GGG | - | chr1.2:66193534-66193553 | MS.gene20740:intron | 40.0% | |
| ATAGATATTGCGGTCCTTGT+TGG | + | chr1.2:66194021-66194040 | None:intergenic | 40.0% | |
| CCGATAGCAATTTCTCCAAA+AGG | - | chr1.2:66193093-66193112 | MS.gene20740:intron | 40.0% | |
| CTTCAACATTGCTGAGAATG+AGG | - | chr1.2:66194052-66194071 | MS.gene20740:CDS | 40.0% | |
| CTTCAGGAGAGGATTAAAGT+TGG | - | chr1.2:66193002-66193021 | MS.gene20740:CDS | 40.0% | |
| GAAAATGCCATTACCAGTCT+TGG | - | chr1.2:66193570-66193589 | MS.gene20740:intron | 40.0% | |
| GCCAGTTGAGGATAAGATTA+TGG | - | chr1.2:66192956-66192975 | MS.gene20740:CDS | 40.0% | |
| GGTCAAGTACTTCAAATACC+TGG | + | chr1.2:66193946-66193965 | None:intergenic | 40.0% | |
| GTACTTCAAATACCTGGCAA+AGG | + | chr1.2:66193940-66193959 | None:intergenic | 40.0% | |
| TAATCAACACTACCTTTGCC+AGG | - | chr1.2:66193925-66193944 | MS.gene20740:CDS | 40.0% | |
| TGGGAAAACCTACGAATTCA+GGG | + | chr1.2:66193387-66193406 | None:intergenic | 40.0% | |
| TTAGTGTATGTTTGGATGGG+TGG | - | chr1.2:66193336-66193355 | MS.gene20740:intron | 40.0% | |
| TTGGGAAAACCTACGAATTC+AGG | + | chr1.2:66193388-66193407 | None:intergenic | 40.0% | |
| TTTGGAGAAATTGCTATCGG+AGG | + | chr1.2:66193093-66193112 | None:intergenic | 40.0% | |
| ! | AAAAGCACAATGTGAGGGAT+TGG | - | chr1.2:66193979-66193998 | MS.gene20740:CDS | 40.0% |
| ! | TCGTGTTATTGCATCCAACA+AGG | - | chr1.2:66194004-66194023 | MS.gene20740:CDS | 40.0% |
| !! | TGAGAATCCTTAAGTTGGCA+CGG | + | chr1.2:66193618-66193637 | None:intergenic | 40.0% |
| !! | TGGCAAAGGTAGTGTTGATT+AGG | + | chr1.2:66193926-66193945 | None:intergenic | 40.0% |
| ACAGCAACAACTAGACCTCA+CGG | + | chr1.2:66193532-66193551 | None:intergenic | 45.0% | |
| ATCGGAGGTAACAGTGATCT+TGG | + | chr1.2:66193078-66193097 | None:intergenic | 45.0% | |
| CAAACATCACAAGCCAAGAC+TGG | + | chr1.2:66193586-66193605 | None:intergenic | 45.0% | |
| CAGGAGAGGATTAAAGTTGG+TGG | - | chr1.2:66193005-66193024 | MS.gene20740:CDS | 45.0% | |
| CTCCTGAAGAAACTTCTCCA+GGG | + | chr1.2:66192991-66193010 | None:intergenic | 45.0% | |
| GAGGTCTAGTTGTTGCTGTA+TGG | - | chr1.2:66193533-66193552 | MS.gene20740:intron | 45.0% | |
| GGAGTGAAGGGTAAGAAGAA+GGG | - | chr1.2:66192906-66192925 | MS.gene20740:CDS | 45.0% | |
| TCACAAGCCAAGACTGGTAA+TGG | + | chr1.2:66193580-66193599 | None:intergenic | 45.0% | |
| TCTCCTGAAGAAACTTCTCC+AGG | + | chr1.2:66192992-66193011 | None:intergenic | 45.0% | |
| TGGAGAAGTTTCTTCAGGAG+AGG | - | chr1.2:66192991-66193010 | MS.gene20740:CDS | 45.0% | |
| TTCCCTGGAGAAGTTTCTTC+AGG | - | chr1.2:66192986-66193005 | MS.gene20740:CDS | 45.0% | |
| TTCTGGTGCAGTTACTGAAC+TGG | - | chr1.2:66193742-66193761 | MS.gene20740:intron | 45.0% | |
| !! | ACTAGACAATAGTGGACACC+AGG | + | chr1.2:66193686-66193705 | None:intergenic | 45.0% |
| !! | GAGAATCCTTAAGTTGGCAC+GGG | + | chr1.2:66193617-66193636 | None:intergenic | 45.0% |
| CGGAGTGAAGGGTAAGAAGA+AGG | - | chr1.2:66192905-66192924 | MS.gene20740:CDS | 50.0% | |
| CGTTAGCACCCTGAATTCGT+AGG | - | chr1.2:66193376-66193395 | MS.gene20740:intron | 50.0% | |
| GATTATGGACATCGCTTCCC+TGG | - | chr1.2:66192971-66192990 | MS.gene20740:CDS | 50.0% | |
| TGCATTCCCGTGCCAACTTA+AGG | - | chr1.2:66193608-66193627 | MS.gene20740:intron | 50.0% | |
| GGTGGTAAAGCTGGTGCTCT+CGG | - | chr1.2:66193023-66193042 | MS.gene20740:CDS | 55.0% | |
| CGATTGCGCGAAGCCAGTTG+AGG | - | chr1.2:66192944-66192963 | MS.gene20740:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 66192900 | 66194091 | 66192900 | ID=MS.gene20740 |
| chr1.2 | mRNA | 66192900 | 66194091 | 66192900 | ID=MS.gene20740.t1;Parent=MS.gene20740 |
| chr1.2 | exon | 66193877 | 66194091 | 66193877 | ID=MS.gene20740.t1.exon1;Parent=MS.gene20740.t1 |
| chr1.2 | CDS | 66193877 | 66194091 | 66193877 | ID=cds.MS.gene20740.t1;Parent=MS.gene20740.t1 |
| chr1.2 | exon | 66192900 | 66193044 | 66192900 | ID=MS.gene20740.t1.exon2;Parent=MS.gene20740.t1 |
| chr1.2 | CDS | 66192900 | 66193044 | 66192900 | ID=cds.MS.gene20740.t1;Parent=MS.gene20740.t1 |
| Gene Sequence |
| Protein sequence |
