AlfalfaGEDB | MS.gene064071

M. sativa cultivar XinJiangDaYe / MS.gene064071

KEGG: K03945
GO: -
PFAM: PF15879.8

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064071.t1	XP_003626648.1	100	64	0	0	1	64	1	64	6.30E-29	136

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064071.t1	Q9C9Z5	77.4	62	14	0	1	62	1	62	2.0e-23	109.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064071.t1	Q1STQ6	100.0	64	0	0	1	64	1	64	4.6e-29	136.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049255	MS.gene064071	0.864364	1.28E-64	-1.69E-46
MS.gene049341	MS.gene064071	0.852919	3.37E-61	-1.69E-46
MS.gene049382	MS.gene064071	0.811464	6.91E-51	-1.69E-46
MS.gene049756	MS.gene064071	0.83708	6.42E-57	-1.69E-46
MS.gene04984	MS.gene064071	0.803049	4.20E-49	-1.69E-46
MS.gene049887	MS.gene064071	0.810002	1.43E-50	-1.69E-46
MS.gene050277	MS.gene064071	0.906723	1.09E-80	-1.69E-46
MS.gene050303	MS.gene064071	0.8109	9.16E-51	-1.69E-46
MS.gene050317	MS.gene064071	0.807688	4.47E-50	-1.69E-46
MS.gene050320	MS.gene064071	0.820625	6.21E-53	-1.69E-46
MS.gene050437	MS.gene064071	0.864962	8.33E-65	-1.69E-46
MS.gene050689	MS.gene064071	0.82815	1.06E-54	-1.69E-46
MS.gene050752	MS.gene064071	0.82559	4.31E-54	-1.69E-46
MS.gene050815	MS.gene064071	0.857492	1.57E-62	-1.69E-46
MS.gene050838	MS.gene064071	0.841152	5.65E-58	-1.69E-46
MS.gene051063	MS.gene064071	0.852701	3.88E-61	-1.69E-46
MS.gene051241	MS.gene064071	0.836712	7.97E-57	-1.69E-46
MS.gene051243	MS.gene064071	0.848427	6.17E-60	-1.69E-46
MS.gene051245	MS.gene064071	0.877883	4.39E-69	-1.69E-46
MS.gene051328	MS.gene064071	0.860365	2.17E-63	-1.69E-46
MS.gene051330	MS.gene064071	0.801141	1.04E-48	-1.69E-46
MS.gene051349	MS.gene064071	0.8122	4.78E-51	-1.69E-46
MS.gene05134	MS.gene064071	0.850484	1.65E-60	-1.69E-46
MS.gene051451	MS.gene064071	0.831108	2.01E-55	-1.69E-46
MS.gene051633	MS.gene064071	0.842366	2.70E-58	-1.69E-46
MS.gene051746	MS.gene064071	0.858906	5.97E-63	-1.69E-46
MS.gene051748	MS.gene064071	0.857505	1.56E-62	-1.69E-46
MS.gene051756	MS.gene064071	0.836218	1.06E-56	-1.69E-46
MS.gene051757	MS.gene064071	0.858348	8.77E-63	-1.69E-46
MS.gene051789	MS.gene064071	0.804739	1.87E-49	-1.69E-46
MS.gene051850	MS.gene064071	0.826249	3.01E-54	-1.69E-46
MS.gene051903	MS.gene064071	0.864674	1.03E-64	-1.69E-46
MS.gene052133	MS.gene064071	0.819475	1.14E-52	-1.69E-46
MS.gene052202	MS.gene064071	0.810989	8.76E-51	-1.69E-46
MS.gene052286	MS.gene064071	0.859432	4.15E-63	-1.69E-46
MS.gene052302	MS.gene064071	0.822576	2.20E-53	-1.69E-46
MS.gene052376	MS.gene064071	0.816857	4.46E-52	-1.69E-46
MS.gene052856	MS.gene064071	0.811433	7.02E-51	-1.69E-46
MS.gene052947	MS.gene064071	0.851869	6.70E-61	-1.69E-46
MS.gene053008	MS.gene064071	0.809454	1.88E-50	-1.69E-46
MS.gene053109	MS.gene064071	0.872896	2.24E-67	-1.69E-46
MS.gene053216	MS.gene064071	0.801926	7.15E-49	-1.69E-46
MS.gene053437	MS.gene064071	0.802176	6.35E-49	-1.69E-46
MS.gene053590	MS.gene064071	0.813165	2.94E-51	-1.69E-46
MS.gene054403	MS.gene064071	0.818515	1.88E-52	-1.69E-46
MS.gene055133	MS.gene064071	0.835546	1.58E-56	-1.69E-46
MS.gene055162	MS.gene064071	0.868188	7.86E-66	-1.69E-46
MS.gene055424	MS.gene064071	0.811181	7.96E-51	-1.69E-46
MS.gene055441	MS.gene064071	0.819656	1.04E-52	-1.69E-46
MS.gene055623	MS.gene064071	0.808479	3.04E-50	-1.69E-46
MS.gene056069	MS.gene064071	-0.815119	1.09E-51	-1.69E-46
MS.gene056432	MS.gene064071	0.852873	3.47E-61	-1.69E-46
MS.gene056580	MS.gene064071	0.837095	6.36E-57	-1.69E-46
MS.gene056601	MS.gene064071	0.860786	1.62E-63	-1.69E-46
MS.gene056631	MS.gene064071	0.879296	1.40E-69	-1.69E-46
MS.gene056760	MS.gene064071	0.87007	1.93E-66	-1.69E-46
MS.gene057057	MS.gene064071	0.881266	2.77E-70	-1.69E-46
MS.gene057094	MS.gene064071	0.830522	2.80E-55	-1.69E-46
MS.gene057140	MS.gene064071	0.874576	6.06E-68	-1.69E-46
MS.gene057234	MS.gene064071	0.91406	2.98E-84	-1.69E-46
MS.gene057705	MS.gene064071	0.827213	1.77E-54	-1.69E-46
MS.gene05795	MS.gene064071	0.811851	5.69E-51	-1.69E-46
MS.gene058054	MS.gene064071	0.832869	7.39E-56	-1.69E-46
MS.gene058055	MS.gene064071	0.886013	4.95E-72	-1.69E-46
MS.gene058084	MS.gene064071	0.818904	1.54E-52	-1.69E-46
MS.gene05809	MS.gene064071	0.814594	1.42E-51	-1.69E-46
MS.gene058182	MS.gene064071	0.829544	4.85E-55	-1.69E-46
MS.gene058238	MS.gene064071	0.869956	2.10E-66	-1.69E-46
MS.gene058646	MS.gene064071	0.81834	2.06E-52	-1.69E-46
MS.gene058654	MS.gene064071	0.828152	1.05E-54	-1.69E-46
MS.gene058906	MS.gene064071	0.923258	3.37E-89	-1.69E-46
MS.gene059151	MS.gene064071	0.801979	6.97E-49	-1.69E-46
MS.gene059317	MS.gene064071	0.803619	3.20E-49	-1.69E-46
MS.gene059898	MS.gene064071	0.88192	1.61E-70	-1.69E-46
MS.gene06001	MS.gene064071	0.873857	1.06E-67	-1.69E-46
MS.gene060165	MS.gene064071	0.812321	4.50E-51	-1.69E-46
MS.gene060429	MS.gene064071	0.803032	4.23E-49	-1.69E-46
MS.gene060463	MS.gene064071	0.822672	2.09E-53	-1.69E-46
MS.gene060465	MS.gene064071	0.826096	3.27E-54	-1.69E-46
MS.gene060586	MS.gene064071	0.803706	3.07E-49	-1.69E-46
MS.gene060702	MS.gene064071	0.835962	1.24E-56	-1.69E-46
MS.gene061145	MS.gene064071	0.847078	1.45E-59	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064071.t1	MTR_8g005360	100.000	64	0	0	1	64	1	64	1.66e-43	134

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064071.t1	AT3G08610	75.000	64	16	0	1	64	1	64	2.40e-33	108

Find 0 sgRNAs with CRISPR-Local

Find 19 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAATTAAAATTGAATTGAAT+TGG	+	55976:12054-12073	MS.gene064071:intron	10.0%
!!!	TTGAATTGGATCTATTTTTG+TGG	+	55976:12068-12087	MS.gene064071:intron	25.0%
	ATTCCAGCAATTATTCCCAA+AGG	-	55976:11926-11945	MS.gene064071:intergenic	35.0%
	TTGGAAGCTATGTTACCTTT+GGG	+	55976:11908-11927	MS.gene064071:CDS	35.0%
!	TTACCTTTGGGAATAATTGC+TGG	+	55976:11920-11939	MS.gene064071:CDS	35.0%
	AAATCATTGCCGATGTGCTT+AGG	-	55976:12098-12117	MS.gene064070:intergenic	40.0%
	GCTGGAATGCTTTGTGTTAT+GGG	+	55976:11938-11957	MS.gene064071:CDS	40.0%
	GTTGGAAGCTATGTTACCTT+TGG	+	55976:11907-11926	MS.gene064071:CDS	40.0%
	TGCTGGAATGCTTTGTGTTA+TGG	+	55976:11937-11956	MS.gene064071:CDS	40.0%
	AGCACATCGGCAATGATTTG+TGG	+	55976:12099-12118	MS.gene064071:CDS	45.0%
!	GCACATCGGCAATGATTTGT+GGG	+	55976:12100-12119	MS.gene064071:CDS	45.0%
!!	TGTGGTTAGCCTAAGCACAT+CGG	+	55976:12086-12105	MS.gene064071:intron	45.0%
	CTTCTTGTCCCTACGTTCCA+TGG	-	55976:12132-12151	MS.gene064071:intergenic	50.0%
	TACATCCACAGAGCTGCTCA+CGG	+	55976:11974-11993	MS.gene064071:CDS	50.0%
!	CGGCAATGATTTGTGGGACG+TGG	+	55976:12106-12125	MS.gene064071:CDS	55.0%
!	TGATTTGTGGGACGTGGCCA+TGG	+	55976:12112-12131	MS.gene064071:CDS	55.0%
	GGACGTGGCCATGGAACGTA+GGG	+	55976:12121-12140	MS.gene064071:CDS	60.0%
	CTCGTCCGTGAGCAGCTCTG+TGG	-	55976:11982-12001	MS.gene064071:intergenic	65.0%
	GGGACGTGGCCATGGAACGT+AGG	+	55976:12120-12139	MS.gene064071:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
55976	gene	11893	12181	11893	ID=MS.gene064071
55976	mRNA	11893	12181	11893	ID=MS.gene064071.t1;Parent=MS.gene064071
55976	exon	11893	12000	11893	ID=MS.gene064071.t1.exon1;Parent=MS.gene064071.t1
55976	CDS	11893	12000	11893	ID=cds.MS.gene064071.t1;Parent=MS.gene064071.t1
55976	exon	12095	12181	12095	ID=MS.gene064071.t1.exon2;Parent=MS.gene064071.t1
55976	CDS	12095	12181	12095	ID=cds.MS.gene064071.t1;Parent=MS.gene064071.t1

Gene Sequence	>MS.gene064071 ATGGCGTTGCATTGGTTGGAAGCTATGTTACCTTTGGGAATAATTGCTGGAATGCTTTGTGTTATGGGTAACGCTCAGTATTACATCCACAGAGCTGCTCACGGACGAGTATGTATTCTTCTTCATTCAATTCAATTGAAGTTATCTGTTCTGTGTTTTTAAAATTAAAATTGAATTGAATTGGATCTATTTTTGTGGTTAGCCTAAGCACATCGGCAATGATTTGTGGGACGTGGCCATGGAACGTAGGGACAAGAAGCTCGTCGATCAAGCTTCTTCTTCCAATTAA
Protein sequence	>MS.gene064071.t1 MALHWLEAMLPLGIIAGMLCVMGNAQYYIHRAAHGRPKHIGNDLWDVAMERRDKKLVDQASSSN