Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065666.t1 | XP_013470094.1 | 95.4 | 768 | 34 | 1 | 1 | 768 | 1 | 767 | 0.00E+00 | 1195.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065666.t1 | Q2TBE0 | 28.4 | 707 | 362 | 21 | 194 | 765 | 196 | 893 | 1.3e-52 | 209.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065666.t1 | A0A072VQQ5 | 95.4 | 768 | 34 | 1 | 1 | 768 | 1 | 767 | 0.0e+00 | 1195.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene065666 | 0.86413 | 1.52E-64 | -1.69E-46 |
| MS.gene049159 | MS.gene065666 | 0.864767 | 9.59E-65 | -1.69E-46 |
| MS.gene049350 | MS.gene065666 | 0.800945 | 1.14E-48 | -1.69E-46 |
| MS.gene049368 | MS.gene065666 | 0.859321 | 4.48E-63 | -1.69E-46 |
| MS.gene049850 | MS.gene065666 | 0.80183 | 7.48E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene065666 | 0.852451 | 4.58E-61 | -1.69E-46 |
| MS.gene050084 | MS.gene065666 | 0.809464 | 1.87E-50 | -1.69E-46 |
| MS.gene050085 | MS.gene065666 | 0.837365 | 5.43E-57 | -1.69E-46 |
| MS.gene050384 | MS.gene065666 | 0.807002 | 6.25E-50 | -1.69E-46 |
| MS.gene050386 | MS.gene065666 | 0.80827 | 3.36E-50 | -1.69E-46 |
| MS.gene050551 | MS.gene065666 | 0.847316 | 1.25E-59 | -1.69E-46 |
| MS.gene050646 | MS.gene065666 | 0.831118 | 2.00E-55 | -1.69E-46 |
| MS.gene050654 | MS.gene065666 | 0.853032 | 3.12E-61 | -1.69E-46 |
| MS.gene050689 | MS.gene065666 | 0.868682 | 5.45E-66 | -1.69E-46 |
| MS.gene050931 | MS.gene065666 | 0.808265 | 3.37E-50 | -1.69E-46 |
| MS.gene050941 | MS.gene065666 | 0.842642 | 2.28E-58 | -1.69E-46 |
| MS.gene051003 | MS.gene065666 | 0.821787 | 3.35E-53 | -1.69E-46 |
| MS.gene051198 | MS.gene065666 | 0.812335 | 4.47E-51 | -1.69E-46 |
| MS.gene051328 | MS.gene065666 | 0.806655 | 7.40E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene065666 | 0.807817 | 4.20E-50 | -1.69E-46 |
| MS.gene051363 | MS.gene065666 | 0.83666 | 8.22E-57 | -1.69E-46 |
| MS.gene051365 | MS.gene065666 | 0.828125 | 1.07E-54 | -1.69E-46 |
| MS.gene051381 | MS.gene065666 | 0.819931 | 8.96E-53 | -1.69E-46 |
| MS.gene051676 | MS.gene065666 | 0.800001 | 1.77E-48 | -1.69E-46 |
| MS.gene051744 | MS.gene065666 | 0.803844 | 2.87E-49 | -1.69E-46 |
| MS.gene051800 | MS.gene065666 | 0.801619 | 8.27E-49 | -1.69E-46 |
| MS.gene051856 | MS.gene065666 | 0.818136 | 2.29E-52 | -1.69E-46 |
| MS.gene051975 | MS.gene065666 | 0.814772 | 1.30E-51 | -1.69E-46 |
| MS.gene052012 | MS.gene065666 | 0.806106 | 9.66E-50 | -1.69E-46 |
| MS.gene052072 | MS.gene065666 | 0.809949 | 1.47E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene065666 | 0.852328 | 4.96E-61 | -1.69E-46 |
| MS.gene052434 | MS.gene065666 | 0.81447 | 1.52E-51 | -1.69E-46 |
| MS.gene052463 | MS.gene065666 | 0.803559 | 3.29E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene065666 | 0.848662 | 5.31E-60 | -1.69E-46 |
| MS.gene052518 | MS.gene065666 | 0.831939 | 1.26E-55 | -1.69E-46 |
| MS.gene052609 | MS.gene065666 | 0.841184 | 5.54E-58 | -1.69E-46 |
| MS.gene052611 | MS.gene065666 | 0.800263 | 1.56E-48 | -1.69E-46 |
| MS.gene052863 | MS.gene065666 | 0.836161 | 1.10E-56 | -1.69E-46 |
| MS.gene052896 | MS.gene065666 | 0.823141 | 1.62E-53 | -1.69E-46 |
| MS.gene053008 | MS.gene065666 | 0.869879 | 2.22E-66 | -1.69E-46 |
| MS.gene053058 | MS.gene065666 | 0.809968 | 1.46E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene065666 | 0.841797 | 3.82E-58 | -1.69E-46 |
| MS.gene053226 | MS.gene065666 | 0.821113 | 4.80E-53 | -1.69E-46 |
| MS.gene053381 | MS.gene065666 | 0.805132 | 1.55E-49 | -1.69E-46 |
| MS.gene05350 | MS.gene065666 | 0.814433 | 1.54E-51 | -1.69E-46 |
| MS.gene053541 | MS.gene065666 | 0.800963 | 1.13E-48 | -1.69E-46 |
| MS.gene053542 | MS.gene065666 | 0.811975 | 5.35E-51 | -1.69E-46 |
| MS.gene05364 | MS.gene065666 | 0.824762 | 6.77E-54 | -1.69E-46 |
| MS.gene053931 | MS.gene065666 | 0.812764 | 3.60E-51 | -1.69E-46 |
| MS.gene054472 | MS.gene065666 | 0.800796 | 1.22E-48 | -1.69E-46 |
| MS.gene054479 | MS.gene065666 | 0.816611 | 5.06E-52 | -1.69E-46 |
| MS.gene05458 | MS.gene065666 | 0.813665 | 2.28E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene065666 | 0.833211 | 6.07E-56 | -1.69E-46 |
| MS.gene054657 | MS.gene065666 | 0.827489 | 1.52E-54 | -1.69E-46 |
| MS.gene054823 | MS.gene065666 | 0.800319 | 1.52E-48 | -1.69E-46 |
| MS.gene05517 | MS.gene065666 | 0.842289 | 2.83E-58 | -1.69E-46 |
| MS.gene055310 | MS.gene065666 | 0.803695 | 3.08E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene065666 | 0.81778 | 2.76E-52 | -1.69E-46 |
| MS.gene055313 | MS.gene065666 | 0.811954 | 5.41E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene065666 | 0.807034 | 6.16E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene065666 | 0.850173 | 2.02E-60 | -1.69E-46 |
| MS.gene055623 | MS.gene065666 | 0.805647 | 1.21E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene065666 | 0.802298 | 5.99E-49 | -1.69E-46 |
| MS.gene055864 | MS.gene065666 | 0.804412 | 2.19E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene065666 | 0.814746 | 1.32E-51 | -1.69E-46 |
| MS.gene056045 | MS.gene065666 | 0.846547 | 2.03E-59 | -1.69E-46 |
| MS.gene056174 | MS.gene065666 | 0.804077 | 2.57E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene065666 | 0.84728 | 1.28E-59 | -1.69E-46 |
| MS.gene056308 | MS.gene065666 | 0.817714 | 2.86E-52 | -1.69E-46 |
| MS.gene056507 | MS.gene065666 | 0.805465 | 1.32E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene065666 | 0.809981 | 1.45E-50 | -1.69E-46 |
| MS.gene056786 | MS.gene065666 | 0.802119 | 6.53E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene065666 | 0.801697 | 7.97E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene065666 | 0.822944 | 1.81E-53 | -1.69E-46 |
| MS.gene05690 | MS.gene065666 | 0.816049 | 6.76E-52 | -1.69E-46 |
| MS.gene057034 | MS.gene065666 | 0.833118 | 6.41E-56 | -1.69E-46 |
| MS.gene057102 | MS.gene065666 | 0.809575 | 1.77E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene065666 | 0.833997 | 3.87E-56 | -1.69E-46 |
| MS.gene057446 | MS.gene065666 | 0.838714 | 2.44E-57 | -1.69E-46 |
| MS.gene057598 | MS.gene065666 | 0.821206 | 4.57E-53 | -1.69E-46 |
| MS.gene057693 | MS.gene065666 | 0.803533 | 3.33E-49 | -1.69E-46 |
| MS.gene057855 | MS.gene065666 | 0.84351 | 1.34E-58 | -1.69E-46 |
| MS.gene057869 | MS.gene065666 | 0.808927 | 2.44E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene065666 | 0.841394 | 4.88E-58 | -1.69E-46 |
| MS.gene058009 | MS.gene065666 | 0.816413 | 5.60E-52 | -1.69E-46 |
| MS.gene058010 | MS.gene065666 | 0.838995 | 2.06E-57 | -1.69E-46 |
| MS.gene058081 | MS.gene065666 | 0.821039 | 4.99E-53 | -1.69E-46 |
| MS.gene058126 | MS.gene065666 | 0.810832 | 9.47E-51 | -1.69E-46 |
| MS.gene058292 | MS.gene065666 | 0.872354 | 3.39E-67 | -1.69E-46 |
| MS.gene058427 | MS.gene065666 | 0.812873 | 3.41E-51 | -1.69E-46 |
| MS.gene058595 | MS.gene065666 | 0.824696 | 7.02E-54 | -1.69E-46 |
| MS.gene058781 | MS.gene065666 | 0.835635 | 1.50E-56 | -1.69E-46 |
| MS.gene058783 | MS.gene065666 | 0.834701 | 2.57E-56 | -1.69E-46 |
| MS.gene058979 | MS.gene065666 | 0.832263 | 1.04E-55 | -1.69E-46 |
| MS.gene05897 | MS.gene065666 | 0.812791 | 3.55E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene065666 | 0.819502 | 1.12E-52 | -1.69E-46 |
| MS.gene059283 | MS.gene065666 | 0.816263 | 6.05E-52 | -1.69E-46 |
| MS.gene059570 | MS.gene065666 | 0.801201 | 1.01E-48 | -1.69E-46 |
| MS.gene059725 | MS.gene065666 | 0.83499 | 2.18E-56 | -1.69E-46 |
| MS.gene05978 | MS.gene065666 | 0.848974 | 4.35E-60 | -1.69E-46 |
| MS.gene059842 | MS.gene065666 | 0.863126 | 3.11E-64 | -1.69E-46 |
| MS.gene060085 | MS.gene065666 | 0.816922 | 4.31E-52 | -1.69E-46 |
| MS.gene060296 | MS.gene065666 | 0.851763 | 7.18E-61 | -1.69E-46 |
| MS.gene060435 | MS.gene065666 | 0.810243 | 1.27E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene065666 | 0.810329 | 1.22E-50 | -1.69E-46 |
| MS.gene060777 | MS.gene065666 | 0.801918 | 7.18E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene065666 | 0.802422 | 5.65E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene065666 | 0.835545 | 1.58E-56 | -1.69E-46 |
| MS.gene060935 | MS.gene065666 | 0.874593 | 5.98E-68 | -1.69E-46 |
| MS.gene060937 | MS.gene065666 | 0.868094 | 8.43E-66 | -1.69E-46 |
| MS.gene061100 | MS.gene065666 | 0.815691 | 8.12E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065666.t1 | MTR_1g107575 | 96.354 | 768 | 27 | 1 | 1 | 768 | 1 | 767 | 0.0 | 1520 |
| MS.gene065666.t1 | MTR_4g126260 | 23.715 | 253 | 186 | 5 | 508 | 759 | 356 | 602 | 1.66e-12 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065666.t1 | AT1G56290 | 58.648 | 636 | 227 | 12 | 151 | 765 | 72 | 692 | 0.0 | 730 |
| MS.gene065666.t1 | AT5G56900 | 25.472 | 318 | 212 | 11 | 450 | 759 | 200 | 500 | 4.03e-15 | 79.3 |
| MS.gene065666.t1 | AT5G56900 | 25.472 | 318 | 212 | 11 | 450 | 759 | 101 | 401 | 6.73e-15 | 78.2 |
| MS.gene065666.t1 | AT5G56900 | 25.472 | 318 | 212 | 11 | 450 | 759 | 293 | 593 | 8.24e-15 | 78.6 |
Find 174 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATACCACTTCTTCTTTC+TGG | 0.127155 | 1.4:-83056214 | None:intergenic |
| AATGCAGAACAAGCAGTTTA+AGG | 0.165236 | 1.4:+83060255 | MS.gene065666:CDS |
| TAAATCTAGAAAATGCTTTC+TGG | 0.175819 | 1.4:+83055911 | None:intergenic |
| GATAATGAATCTTGCACTTT+AGG | 0.203429 | 1.4:-83059296 | None:intergenic |
| AGATGGCAGTGATGGTTCTT+TGG | 0.217013 | 1.4:+83056383 | MS.gene065666:CDS |
| AAAAGAGGCAACGTTCTTTC+TGG | 0.231869 | 1.4:-83060402 | None:intergenic |
| CTATCCAACGGGATTCTAAA+AGG | 0.246272 | 1.4:+83059082 | MS.gene065666:CDS |
| TTCTATCGTCCTCCCTTGTT+GGG | 0.271017 | 1.4:+83058491 | MS.gene065666:CDS |
| AGCCTCTTTAGCAACATCTT+TGG | 0.273963 | 1.4:-83061198 | None:intergenic |
| TTAACTCCATCCCTTTCTTC+TGG | 0.275995 | 1.4:-83058451 | None:intergenic |
| CCAAATTCTACATGAAAATA+AGG | 0.288504 | 1.4:-83062873 | None:intergenic |
| GTCAAAATGATCCCAGTCTT+TGG | 0.291825 | 1.4:-83063060 | None:intergenic |
| GCCTCTTTAGCAACATCTTT+GGG | 0.302529 | 1.4:-83061197 | None:intergenic |
| ATCAGATATTAGGAGGAAAA+AGG | 0.309597 | 1.4:+83056116 | MS.gene065666:CDS |
| TAACTCCGATGGCTCTGTTT+TGG | 0.313770 | 1.4:+83059448 | MS.gene065666:CDS |
| CTTCTATCGTCCTCCCTTGT+TGG | 0.323231 | 1.4:+83058490 | MS.gene065666:CDS |
| ACAAGATGCATAGGCCGATT+TGG | 0.336873 | 1.4:-83060436 | None:intergenic |
| CGATATTGCAAGAAAAGAAA+TGG | 0.349250 | 1.4:+83056479 | MS.gene065666:CDS |
| ACTCGTATCAATGAGTCTTT+TGG | 0.351937 | 1.4:-83062814 | None:intergenic |
| CTGACCTTCTTAAAGTATAA+AGG | 0.363032 | 1.4:-83061221 | None:intergenic |
| AAATCTAGAAAATGCTTTCT+GGG | 0.367835 | 1.4:+83055912 | None:intergenic |
| TTAAATAAATTTGCTAATGA+TGG | 0.373787 | 1.4:+83059389 | MS.gene065666:CDS |
| GATGGCAGTGATGGTTCTTT+GGG | 0.376486 | 1.4:+83056384 | MS.gene065666:CDS |
| AAGGAGTTTAAGAGTAGTCT+TGG | 0.378970 | 1.4:+83062933 | MS.gene065666:CDS |
| TAACTCCATCCCTTTCTTCT+GGG | 0.389734 | 1.4:-83058450 | None:intergenic |
| CTTCCATCATCCTTTAGATA+AGG | 0.393080 | 1.4:-83058421 | None:intergenic |
| CATTAGAGGCATGCTGCATT+TGG | 0.401828 | 1.4:+83062965 | MS.gene065666:CDS |
| AGAAATTAAACTCACGTGAA+TGG | 0.401995 | 1.4:-83060536 | None:intergenic |
| CTTGGGTTGAATGTCATTAG+AGG | 0.406348 | 1.4:+83062951 | MS.gene065666:CDS |
| CAGTGGCAGCCCGTGGTGCC+TGG | 0.410325 | 1.4:+83060496 | MS.gene065666:CDS |
| CACCCTCAGCTACAGCAAAC+TGG | 0.415469 | 1.4:-83059337 | None:intergenic |
| GATATTGCCAGAGGAGGTTC+CGG | 0.417230 | 1.4:+83056560 | MS.gene065666:CDS |
| AAAGAGGCAACGTTCTTTCT+GGG | 0.420692 | 1.4:-83060401 | None:intergenic |
| AAGTGCAAGATTCATTATCT+TGG | 0.421374 | 1.4:+83059300 | MS.gene065666:CDS |
| GGAGAAAGGTGGGGTTCTCT+TGG | 0.424757 | 1.4:+83058943 | MS.gene065666:CDS |
| TCCTTTGTTTCTGAAACAGC+TGG | 0.426347 | 1.4:-83056537 | None:intergenic |
| CAAAAGTCACGTACAAAAGA+TGG | 0.426378 | 1.4:+83056423 | MS.gene065666:CDS |
| GCCAGAGGAGGTTCCGGTTG+AGG | 0.427345 | 1.4:+83056566 | MS.gene065666:CDS |
| CTTTAGGTGCTTTCATTTCA+CGG | 0.429416 | 1.4:-83059280 | None:intergenic |
| CTAAGACATACCTCCTCAAC+CGG | 0.430215 | 1.4:-83056579 | None:intergenic |
| GCATGGCCTTAGCTGCCAAC+TGG | 0.432433 | 1.4:-83059556 | None:intergenic |
| TCCTCAACCGGAACCTCCTC+TGG | 0.432540 | 1.4:-83056567 | None:intergenic |
| TAAAGCAGCTGCACCAGCTC+GGG | 0.436695 | 1.4:+83058990 | MS.gene065666:CDS |
| TGGATAGGCTTATCAGAATC+TGG | 0.438375 | 1.4:-83059066 | None:intergenic |
| TCTTCTTCAGATGGCAGTGA+TGG | 0.448835 | 1.4:+83056375 | MS.gene065666:CDS |
| GAAATTAAACTCACGTGAAT+GGG | 0.449576 | 1.4:-83060535 | None:intergenic |
| GGCTCCTTTATACTTTAAGA+AGG | 0.451038 | 1.4:+83061217 | MS.gene065666:CDS |
| TCGTCCTCCCTTGTTGGGGA+TGG | 0.451524 | 1.4:+83058496 | MS.gene065666:CDS |
| TTAGCAACATCTTTGGGTAC+AGG | 0.452375 | 1.4:-83061191 | None:intergenic |
| TGCAAACCAGTTGGCAGCTA+AGG | 0.457599 | 1.4:+83059550 | MS.gene065666:CDS |
| AGATAAGGATTCAATTCCTT+AGG | 0.459784 | 1.4:-83058406 | None:intergenic |
| TTCTGATAAGCCTATCCAAC+GGG | 0.465145 | 1.4:+83059071 | MS.gene065666:CDS |
| ACCCAAAGATGTTGCTAAAG+AGG | 0.465690 | 1.4:+83061196 | MS.gene065666:CDS |
| TGCAAGAAAAGAAATGGGAT+TGG | 0.466865 | 1.4:+83056485 | MS.gene065666:CDS |
| AACTCTACAAACCTGGTCAC+GGG | 0.470379 | 1.4:-83055948 | None:intergenic |
| TGGGATTGGATTGGATGCTT+AGG | 0.475574 | 1.4:+83056499 | MS.gene065666:CDS |
| AGGGAAGTTCTAGTTCTAGA+AGG | 0.477096 | 1.4:+83059864 | MS.gene065666:CDS |
| TGAAGAAGCTGATAGACTAA+TGG | 0.482397 | 1.4:+83059601 | MS.gene065666:CDS |
| GAAAAGAAATGGGATTGGAT+TGG | 0.486728 | 1.4:+83056490 | MS.gene065666:CDS |
| TCACCAGGTATGTCTACATC+TGG | 0.490912 | 1.4:-83059497 | None:intergenic |
| AATCCTTATCTAAAGGATGA+TGG | 0.493135 | 1.4:+83058418 | MS.gene065666:CDS |
| TGCTTAGGTCTGAAAGTAAG+AGG | 0.494397 | 1.4:+83056514 | MS.gene065666:CDS |
| ACAGGTTGTGGGAGAAAGGT+GGG | 0.494592 | 1.4:+83058933 | MS.gene065666:intron |
| AGGAGTTTAAGAGTAGTCTT+GGG | 0.500080 | 1.4:+83062934 | MS.gene065666:CDS |
| ACGGTCAAGGAGTGGTAAAA+AGG | 0.500765 | 1.4:+83056329 | MS.gene065666:CDS |
| GATATTGCAAGAAAAGAAAT+GGG | 0.506087 | 1.4:+83056480 | MS.gene065666:CDS |
| GGAATTGAATCCTTATCTAA+AGG | 0.506348 | 1.4:+83058411 | MS.gene065666:CDS |
| TGAAAATAAGGAAAGCCCTT+GGG | 0.506574 | 1.4:-83062861 | None:intergenic |
| CTAGGTACAAGATGAGGACT+TGG | 0.508187 | 1.4:+83056062 | MS.gene065666:intron |
| GAAATTCATTCCCCGTGACC+AGG | 0.508309 | 1.4:+83055937 | MS.gene065666:CDS |
| TCTTGAAACTGTGATGGGAT+TGG | 0.510705 | 1.4:+83061133 | MS.gene065666:CDS |
| ACAAGATGAGGACTTGGATA+AGG | 0.511436 | 1.4:+83056068 | MS.gene065666:CDS |
| ACGTACAGGTTGTGGGAGAA+AGG | 0.512724 | 1.4:+83058929 | MS.gene065666:intron |
| TCCTTTCAAACGAAGTTGCA+TGG | 0.513085 | 1.4:-83059573 | None:intergenic |
| GCCATGCAACTTCGTTTGAA+AGG | 0.516217 | 1.4:+83059572 | MS.gene065666:CDS |
| TCCTCCCTTGTTGGGGATGG+AGG | 0.516820 | 1.4:+83058499 | MS.gene065666:CDS |
| CTAAAGCAGCTGCACCAGCT+CGG | 0.518101 | 1.4:+83058989 | MS.gene065666:CDS |
| ATGAAAATAAGGAAAGCCCT+TGG | 0.518426 | 1.4:-83062862 | None:intergenic |
| GAAGTGGTTACCCAGAAGAA+AGG | 0.519164 | 1.4:+83058440 | MS.gene065666:CDS |
| GCCTTCGTTTCTTATCATCC+CGG | 0.519609 | 1.4:-83056281 | None:intergenic |
| CCATGTTATTGATGATGAAA+AGG | 0.522343 | 1.4:+83062914 | MS.gene065666:CDS |
| GCCAGCTGTTTCAGAAACAA+AGG | 0.526710 | 1.4:+83056536 | MS.gene065666:CDS |
| ATATCTTCTGAGCAGAAGAA+AGG | 0.527325 | 1.4:+83060196 | MS.gene065666:CDS |
| TTGGATTCTCTAGACAAAAG+AGG | 0.527728 | 1.4:-83060417 | None:intergenic |
| GCAGTTTAAGGTTTATACTC+AGG | 0.528525 | 1.4:+83060267 | MS.gene065666:CDS |
| ACGTCAAAGGTACGAGAAAG+TGG | 0.530885 | 1.4:+83063007 | MS.gene065666:CDS |
| TATCCAACGGGATTCTAAAA+GGG | 0.536857 | 1.4:+83059083 | MS.gene065666:CDS |
| CAACTGAAAGTGAAAGCGAC+CGG | 0.538228 | 1.4:+83056262 | MS.gene065666:CDS |
| TTGGTGGGCAGGAAGAGGCA+AGG | 0.538902 | 1.4:+83059789 | MS.gene065666:intron |
| GTCAAAGAAGGCAAATCCTA+AGG | 0.538930 | 1.4:+83058390 | MS.gene065666:intron |
| TGGTGGGCAGGAAGAGGCAA+GGG | 0.540113 | 1.4:+83059790 | MS.gene065666:intron |
| GTAGAATTTGGTCTAAACAA+AGG | 0.541254 | 1.4:+83062885 | MS.gene065666:CDS |
| GAAGACTCTTCTTCTTCAGA+TGG | 0.541678 | 1.4:+83056366 | MS.gene065666:CDS |
| GCAGCAACGGAGGCATTGCA+TGG | 0.542294 | 1.4:+83061157 | MS.gene065666:CDS |
| CAGCAATGACCAGGCACCAC+GGG | 0.542710 | 1.4:-83060505 | None:intergenic |
| TGATGGGATTGGCGCAGCAA+CGG | 0.543497 | 1.4:+83061144 | MS.gene065666:CDS |
| TTTGTCTAGAGAATCCAAAT+CGG | 0.546300 | 1.4:+83060422 | MS.gene065666:CDS |
| TTCATTTCACGGTCCCGAGA+AGG | 0.548726 | 1.4:-83059269 | None:intergenic |
| TATGGATACGTACAGGTTGT+GGG | 0.551919 | 1.4:+83058922 | MS.gene065666:intron |
| CTCATTGATACGAGTCAGAA+GGG | 0.552831 | 1.4:+83062822 | MS.gene065666:CDS |
| AGGCATGCTGCATTTGGCTG+AGG | 0.559862 | 1.4:+83062971 | MS.gene065666:CDS |
| TAACTCTACAAACCTGGTCA+CGG | 0.560136 | 1.4:-83055949 | None:intergenic |
| AAGTGGTTACCCAGAAGAAA+GGG | 0.560758 | 1.4:+83058441 | MS.gene065666:CDS |
| TATCTAAAGGATGATGGAAG+TGG | 0.562789 | 1.4:+83058424 | MS.gene065666:CDS |
| TCTATCGTCCTCCCTTGTTG+GGG | 0.563715 | 1.4:+83058492 | MS.gene065666:CDS |
| GAAATTAGATCAAGAACTGA+GGG | 0.565433 | 1.4:+83059845 | MS.gene065666:CDS |
| CTTATCAAGCTGATCATCAT+CGG | 0.566051 | 1.4:-83056178 | None:intergenic |
| TGATAAGAAACGAAGGCGGA+AGG | 0.566477 | 1.4:+83056287 | MS.gene065666:CDS |
| TATGCGTGAGTTAGTTAGCA+AGG | 0.567223 | 1.4:+83059418 | MS.gene065666:CDS |
| GATGAATATGACTTTGAGAC+TGG | 0.570613 | 1.4:+83060295 | MS.gene065666:CDS |
| ATGGTTCTTTGGGTCGCCAA+CGG | 0.574425 | 1.4:+83056394 | MS.gene065666:CDS |
| AAGATATGTGAAATTTGCAA+TGG | 0.574800 | 1.4:-83060464 | None:intergenic |
| TTGCTCCTCCATCCCCAACA+AGG | 0.579676 | 1.4:-83058504 | None:intergenic |
| GCATGTAGATGAGCCCGAGC+TGG | 0.580752 | 1.4:-83059003 | None:intergenic |
| TACAGGTTGTGGGAGAAAGG+TGG | 0.581114 | 1.4:+83058932 | MS.gene065666:intron |
| AGTGTTTCTTGAAACTGTGA+TGG | 0.581708 | 1.4:+83061127 | MS.gene065666:CDS |
| AACTGAAAGTGAAAGCGACC+GGG | 0.581958 | 1.4:+83056263 | MS.gene065666:CDS |
| TTTACGCAACTCAATTCCCA+AGG | 0.582185 | 1.4:+83062845 | MS.gene065666:CDS |
| CTATAAGAAGCAGACAAAGA+GGG | 0.582737 | 1.4:+83059025 | MS.gene065666:CDS |
| AAGCCAGTTTGCTGTAGCTG+AGG | 0.582994 | 1.4:+83059334 | MS.gene065666:CDS |
| TTGGGGATGGAGGAGCAAGT+TGG | 0.583549 | 1.4:+83058509 | MS.gene065666:CDS |
| AGAAAAGAGATGGACGGTCA+AGG | 0.584062 | 1.4:+83056316 | MS.gene065666:CDS |
| TGGGATTGGCGCAGCAACGG+AGG | 0.587679 | 1.4:+83061147 | MS.gene065666:CDS |
| TTGATGAAGCAGAAGATGAG+TGG | 0.593008 | 1.4:+83062778 | MS.gene065666:CDS |
| ACTCATTGATACGAGTCAGA+AGG | 0.593762 | 1.4:+83062821 | MS.gene065666:CDS |
| AAAAGTCACGTACAAAAGAT+GGG | 0.596199 | 1.4:+83056424 | MS.gene065666:CDS |
| ACTTTCCAAAACAGAGCCAT+CGG | 0.600722 | 1.4:-83059453 | None:intergenic |
| GCTATAAGAAGCAGACAAAG+AGG | 0.602039 | 1.4:+83059024 | MS.gene065666:CDS |
| AGCCAGTTTGCTGTAGCTGA+GGG | 0.602459 | 1.4:+83059335 | MS.gene065666:CDS |
| AGCGGAGAGAACAAGATCAA+AGG | 0.603131 | 1.4:+83056447 | MS.gene065666:CDS |
| AACGGTGGATGATAATGTGT+GGG | 0.603348 | 1.4:+83061043 | MS.gene065666:CDS |
| AAGGGTCCAGAAAGAAGAAG+TGG | 0.604306 | 1.4:+83056208 | MS.gene065666:CDS |
| GATAAGAAACGAAGGCGGAA+GGG | 0.605462 | 1.4:+83056288 | MS.gene065666:CDS |
| TGCTCCTCCATCCCCAACAA+GGG | 0.605665 | 1.4:-83058503 | None:intergenic |
| CAAGAGCAAGCAGCTCGAGA+AGG | 0.610525 | 1.4:+83058556 | MS.gene065666:CDS |
| TGAAATTAGATCAAGAACTG+AGG | 0.611462 | 1.4:+83059844 | MS.gene065666:CDS |
| ATGGACACAACAAGATGCAT+AGG | 0.612176 | 1.4:-83060445 | None:intergenic |
| TAACATGAGTGCAAACCAGT+TGG | 0.614285 | 1.4:+83059541 | MS.gene065666:CDS |
| TCTCCAGATGTAGACATACC+TGG | 0.614683 | 1.4:+83059494 | MS.gene065666:CDS |
| AATCTAGAAAATGCTTTCTG+GGG | 0.620178 | 1.4:+83055913 | None:intergenic |
| ATTCAAGGTATGCTATGCAG+AGG | 0.622462 | 1.4:+83060173 | MS.gene065666:intron |
| TCACGTACAAAAGATGGGAG+CGG | 0.624007 | 1.4:+83056429 | MS.gene065666:CDS |
| AGAGGAGGTTCCGGTTGAGG+AGG | 0.624945 | 1.4:+83056569 | MS.gene065666:CDS |
| CATATCTTATGTTGCCACAG+TGG | 0.629694 | 1.4:+83060479 | MS.gene065666:CDS |
| GGCACCACGGGCTGCCACTG+TGG | 0.630244 | 1.4:-83060493 | None:intergenic |
| GTGTTTCTTGAAACTGTGAT+GGG | 0.635016 | 1.4:+83061128 | MS.gene065666:CDS |
| GTTTAAGGTTTATACTCAGG+CGG | 0.637491 | 1.4:+83060270 | MS.gene065666:CDS |
| TTACGCAACTCAATTCCCAA+GGG | 0.637688 | 1.4:+83062846 | MS.gene065666:CDS |
| TATAAGAAGCAGACAAAGAG+GGG | 0.639918 | 1.4:+83059026 | MS.gene065666:CDS |
| GTTGCCACAGTGGCAGCCCG+TGG | 0.646274 | 1.4:+83060489 | MS.gene065666:CDS |
| TCCTCCATCCCCAACAAGGG+AGG | 0.647544 | 1.4:-83058500 | None:intergenic |
| ACTCTACAAACCTGGTCACG+GGG | 0.649268 | 1.4:-83055947 | None:intergenic |
| GGTTACCCAGAAGAAAGGGA+TGG | 0.651690 | 1.4:+83058445 | MS.gene065666:CDS |
| GCATGAATCAGCTACAAGAA+CGG | 0.655856 | 1.4:+83061025 | MS.gene065666:intron |
| GAAAGGGATGGAGTTAACGT+TGG | 0.656584 | 1.4:+83058457 | MS.gene065666:CDS |
| AAAGGAGATATTGCCAGAGG+AGG | 0.656762 | 1.4:+83056554 | MS.gene065666:CDS |
| AGAGATGGACGGTCAAGGAG+TGG | 0.659421 | 1.4:+83056321 | MS.gene065666:CDS |
| AAGGAGAGTAGTAACTCCGA+TGG | 0.660069 | 1.4:+83059437 | MS.gene065666:CDS |
| GGTAAAATACAGCAATGACC+AGG | 0.660836 | 1.4:-83060514 | None:intergenic |
| ATTCTGATAAGCCTATCCAA+CGG | 0.661452 | 1.4:+83059070 | MS.gene065666:CDS |
| TTCTGAGCAGAAGAAAGGAG+AGG | 0.665761 | 1.4:+83060201 | MS.gene065666:CDS |
| CAGGTTGTGGGAGAAAGGTG+GGG | 0.667439 | 1.4:+83058934 | MS.gene065666:intron |
| AAGACATGTATAGACGTCAA+AGG | 0.668527 | 1.4:+83062994 | MS.gene065666:CDS |
| TATATACTAGGTACAAGATG+AGG | 0.672250 | 1.4:+83056056 | MS.gene065666:intron |
| ACAGCAATGACCAGGCACCA+CGG | 0.673584 | 1.4:-83060506 | None:intergenic |
| AACAAAGGAGATATTGCCAG+AGG | 0.685554 | 1.4:+83056551 | MS.gene065666:CDS |
| TGAATCAGCTACAAGAACGG+TGG | 0.687115 | 1.4:+83061028 | MS.gene065666:CDS |
| ACCGGGATGATAAGAAACGA+AGG | 0.693258 | 1.4:+83056280 | MS.gene065666:CDS |
| AGAAGGACGAAGCTGCCAAG+AGG | 0.694798 | 1.4:+83058573 | MS.gene065666:CDS |
| AAGAGTAGAAAGAAGCAAGG+AGG | 0.698813 | 1.4:+83060328 | MS.gene065666:CDS |
| GAACGGTGGATGATAATGTG+TGG | 0.714664 | 1.4:+83061042 | MS.gene065666:CDS |
| ACGGTGGATGATAATGTGTG+GGG | 0.723750 | 1.4:+83061044 | MS.gene065666:CDS |
| TCAAAGGTACGAGAAAGTGG+AGG | 0.744298 | 1.4:+83063010 | MS.gene065666:CDS |
| GGGATGATAAGAAACGAAGG+CGG | 0.769963 | 1.4:+83056283 | MS.gene065666:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 83055923 | 83063112 | 83055923 | ID=MS.gene065666 |
| chr1.4 | mRNA | 83055923 | 83063112 | 83055923 | ID=MS.gene065666.t1;Parent=MS.gene065666 |
| chr1.4 | exon | 83055923 | 83055958 | 83055923 | ID=MS.gene065666.t1.exon1;Parent=MS.gene065666.t1 |
| chr1.4 | CDS | 83055923 | 83055958 | 83055923 | ID=cds.MS.gene065666.t1;Parent=MS.gene065666.t1 |
| chr1.4 | exon | 83056066 | 83056590 | 83056066 | ID=MS.gene065666.t1.exon2;Parent=MS.gene065666.t1 |
| chr1.4 | CDS | 83056066 | 83056590 | 83056066 | ID=cds.MS.gene065666.t1;Parent=MS.gene065666.t1 |
| chr1.4 | exon | 83058391 | 83058594 | 83058391 | ID=MS.gene065666.t1.exon3;Parent=MS.gene065666.t1 |
| chr1.4 | CDS | 83058391 | 83058594 | 83058391 | ID=cds.MS.gene065666.t1;Parent=MS.gene065666.t1 |
| chr1.4 | exon | 83058937 | 83059104 | 83058937 | ID=MS.gene065666.t1.exon4;Parent=MS.gene065666.t1 |
| chr1.4 | CDS | 83058937 | 83059104 | 83058937 | ID=cds.MS.gene065666.t1;Parent=MS.gene065666.t1 |
| chr1.4 | exon | 83059251 | 83059622 | 83059251 | ID=MS.gene065666.t1.exon5;Parent=MS.gene065666.t1 |
| chr1.4 | CDS | 83059251 | 83059622 | 83059251 | ID=cds.MS.gene065666.t1;Parent=MS.gene065666.t1 |
| chr1.4 | exon | 83059800 | 83059885 | 83059800 | ID=MS.gene065666.t1.exon6;Parent=MS.gene065666.t1 |
| chr1.4 | CDS | 83059800 | 83059885 | 83059800 | ID=cds.MS.gene065666.t1;Parent=MS.gene065666.t1 |
| chr1.4 | exon | 83060180 | 83060543 | 83060180 | ID=MS.gene065666.t1.exon7;Parent=MS.gene065666.t1 |
| chr1.4 | CDS | 83060180 | 83060543 | 83060180 | ID=cds.MS.gene065666.t1;Parent=MS.gene065666.t1 |
| chr1.4 | exon | 83061026 | 83061238 | 83061026 | ID=MS.gene065666.t1.exon8;Parent=MS.gene065666.t1 |
| chr1.4 | CDS | 83061026 | 83061238 | 83061026 | ID=cds.MS.gene065666.t1;Parent=MS.gene065666.t1 |
| chr1.4 | exon | 83062774 | 83063112 | 83062774 | ID=MS.gene065666.t1.exon9;Parent=MS.gene065666.t1 |
| chr1.4 | CDS | 83062774 | 83063112 | 83062774 | ID=cds.MS.gene065666.t1;Parent=MS.gene065666.t1 |
| Gene Sequence |
| Protein sequence |
