AlfalfaGEDB | MS.gene065666

M. sativa cultivar XinJiangDaYe / MS.gene065666

KEGG: K24940
GO: -
PFAM: PF04676.17 PF04677.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065666.t1	XP_013470094.1	95.4	768	34	1	1	768	1	767	0.00E+00	1195.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065666.t1	Q2TBE0	28.4	707	362	21	194	765	196	893	1.3e-52	209.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065666.t1	A0A072VQQ5	95.4	768	34	1	1	768	1	767	0.0e+00	1195.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene065666	0.86413	1.52E-64	-1.69E-46
MS.gene049159	MS.gene065666	0.864767	9.59E-65	-1.69E-46
MS.gene049350	MS.gene065666	0.800945	1.14E-48	-1.69E-46
MS.gene049368	MS.gene065666	0.859321	4.48E-63	-1.69E-46
MS.gene049850	MS.gene065666	0.80183	7.48E-49	-1.69E-46
MS.gene049983	MS.gene065666	0.852451	4.58E-61	-1.69E-46
MS.gene050084	MS.gene065666	0.809464	1.87E-50	-1.69E-46
MS.gene050085	MS.gene065666	0.837365	5.43E-57	-1.69E-46
MS.gene050384	MS.gene065666	0.807002	6.25E-50	-1.69E-46
MS.gene050386	MS.gene065666	0.80827	3.36E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065666.t1	MTR_1g107575	96.354	768	27	1	1	768	1	767	0.0	1520
MS.gene065666.t1	MTR_4g126260	23.715	253	186	5	508	759	356	602	1.66e-12	71.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065666.t1	AT1G56290	58.648	636	227	12	151	765	72	692	0.0	730
MS.gene065666.t1	AT5G56900	25.472	318	212	11	450	759	200	500	4.03e-15	79.3
MS.gene065666.t1	AT5G56900	25.472	318	212	11	450	759	101	401	6.73e-15	78.2
MS.gene065666.t1	AT5G56900	25.472	318	212	11	450	759	293	593	8.24e-15	78.6

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Find 174 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGGCAACGTTCTTTC+TGG	0.231869	1.4:-83060402	None:intergenic
AAAAGTCACGTACAAAAGAT+GGG	0.596199	1.4:+83056424	MS.gene065666:CDS
AAAGAGGCAACGTTCTTTCT+GGG	0.420692	1.4:-83060401	None:intergenic
AAAGGAGATATTGCCAGAGG+AGG	0.656762	1.4:+83056554	MS.gene065666:CDS
AAATCTAGAAAATGCTTTCT+GGG	0.367835	1.4:+83055912	None:intergenic
AACAAAGGAGATATTGCCAG+AGG	0.685554	1.4:+83056551	MS.gene065666:CDS
AACGGTGGATGATAATGTGT+GGG	0.603348	1.4:+83061043	MS.gene065666:CDS
AACTCTACAAACCTGGTCAC+GGG	0.470379	1.4:-83055948	None:intergenic
AACTGAAAGTGAAAGCGACC+GGG	0.581958	1.4:+83056263	MS.gene065666:CDS
AAGACATGTATAGACGTCAA+AGG	0.668527	1.4:+83062994	MS.gene065666:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	83055923	83063112	83055923	ID=MS.gene065666
chr1.4	mRNA	83055923	83063112	83055923	ID=MS.gene065666.t1;Parent=MS.gene065666
chr1.4	exon	83055923	83055958	83055923	ID=MS.gene065666.t1.exon1;Parent=MS.gene065666.t1
chr1.4	CDS	83055923	83055958	83055923	ID=cds.MS.gene065666.t1;Parent=MS.gene065666.t1
chr1.4	exon	83056066	83056590	83056066	ID=MS.gene065666.t1.exon2;Parent=MS.gene065666.t1
chr1.4	CDS	83056066	83056590	83056066	ID=cds.MS.gene065666.t1;Parent=MS.gene065666.t1
chr1.4	exon	83058391	83058594	83058391	ID=MS.gene065666.t1.exon3;Parent=MS.gene065666.t1
chr1.4	CDS	83058391	83058594	83058391	ID=cds.MS.gene065666.t1;Parent=MS.gene065666.t1
chr1.4	exon	83058937	83059104	83058937	ID=MS.gene065666.t1.exon4;Parent=MS.gene065666.t1
chr1.4	CDS	83058937	83059104	83058937	ID=cds.MS.gene065666.t1;Parent=MS.gene065666.t1
chr1.4	exon	83059251	83059622	83059251	ID=MS.gene065666.t1.exon5;Parent=MS.gene065666.t1
chr1.4	CDS	83059251	83059622	83059251	ID=cds.MS.gene065666.t1;Parent=MS.gene065666.t1
chr1.4	exon	83059800	83059885	83059800	ID=MS.gene065666.t1.exon6;Parent=MS.gene065666.t1
chr1.4	CDS	83059800	83059885	83059800	ID=cds.MS.gene065666.t1;Parent=MS.gene065666.t1
chr1.4	exon	83060180	83060543	83060180	ID=MS.gene065666.t1.exon7;Parent=MS.gene065666.t1
chr1.4	CDS	83060180	83060543	83060180	ID=cds.MS.gene065666.t1;Parent=MS.gene065666.t1
chr1.4	exon	83061026	83061238	83061026	ID=MS.gene065666.t1.exon8;Parent=MS.gene065666.t1
chr1.4	CDS	83061026	83061238	83061026	ID=cds.MS.gene065666.t1;Parent=MS.gene065666.t1
chr1.4	exon	83062774	83063112	83062774	ID=MS.gene065666.t1.exon9;Parent=MS.gene065666.t1
chr1.4	CDS	83062774	83063112	83062774	ID=cds.MS.gene065666.t1;Parent=MS.gene065666.t1

Gene Sequence

>MS.gene065666

ATGCTTTCTGGGGTGAAATTCATTCCCCGTGACCAGGTTTGTAGAGTTACCACCATACTTCTATCAGTCTCACTGTTGTTATTCTTTCCTATTTTTCGGTCTGATTTTGCTTCGTACTCATGTTACTGCGTTGTATATACTAGGTACAAGATGAGGACTTGGATAAGGATTCTGTCTCCAAAGAAAGAAAAAAATCAGATATTAGGAGGAAAAAGGATAAGAGGAAAGGGAAGAGTTCAAGAAATATATCTTCTTCCGATGATGATCAGCTTGATAAGATAAAAAAAGGGTCCAGAAAGAAGAAGTGGTATTCATCTGATGAAAATTCTTCGTTTTATACAACTGAAAGTGAAAGCGACCGGGATGATAAGAAACGAAGGCGGAAGGGAAAAAAGAAAAGAGATGGACGGTCAAGGAGTGGTAAAAAGGAATATACATCTGAGGAAGACTCTTCTTCTTCAGATGGCAGTGATGGTTCTTTGGGTCGCCAACGGAAACACCAAAAGTCACGTACAAAAGATGGGAGCGGAGAGAACAAGATCAAAGGTGAAGCTACCGATATTGCAAGAAAAGAAATGGGATTGGATTGGATGCTTAGGTCTGAAAGTAAGAGGCCAGCTGTTTCAGAAACAAAGGAGATATTGCCAGAGGAGGTTCCGGTTGAGGAGGTATGTCTTAGTATTAAATTCCATTTCCCCTCAGCTGTTCAAATGTCTAGCTCTCATGTCAACTCTACATTTATGTTCTTTTTGAAGTTTTTCTATGAATTCTCTCTTTATGCCCGTCATAATCTGTTGGTGTCGTTCTCAAGTTATTTCTCACAAGATATTTTAAAGATAGATAAAAAGGGAAAGAGTGCATTGAGAAACTTTTGTGTCTATATGGATGATCACCACTCATCAATGAAAGATAGTATGGAACGCAAGGCAAAAGATATAAGCTTGAATTGTCCAATACCATGGCATTAATCTTAGAATTTAACTATTTAAGTTAGATTTAGGGTCATGCTAACAAGTGCCCTTTGTGGAATAAAAAAAGGAAATAATTTAAAAGTTTTATGTAGCAAAAGTTATTTTTTAAAGTTCCAATGTTTTGAATACACCATTCCTAAGATAAAATTTCTTCCTTTGACTTCTTAGCAAGTGCCCTTAGGGCACCTGTTAGCATTTCCCTTTAAGTTATAGGGATACATCATTCAAAACAACTGTAAGATAAAAGGAGATATAAACCATAGGATCCAAAATCCAAACAGTGTGGATGGGTGTGATTTGTGATAGAAGGTGCCACTCAATATTAAAGGAAAATTGTATCACAGTTTAGGACCTGCAGCACTATATAGAGTTTAATGTCACGCGGTAAAGAGACGACAAGAAAGTAAGGTCTTTGTCGCAAATGTTGGAATGGTCCTACAAATGAGTAACTATACTTATACAAGACAATGTAGGATTTGGAATAGAATTATCGCAGATGAAGTTTGGGAAGCCCTTATCGTAGCAAAGATGGTAATGTTCTGTCTTAAATGGTTTGAAAACATGTGTGCCGAAAGACGTGGAGGAGCTCTATTTAGGAGGGTAGTCCATATGATAGAATAATCCAATAGTCAGTGGAAGGCGAGGTTTTGGAAAACTATTTACCAAATAATTAAGAGAGATTTAGATATAATTTTGGATTTGATTCAAGATCGGAAATTATGATGTTGTTTGATTCATGTAGCCAATCCCACCTATTGAGAAAAGGCGTCGGTTGTTGTTGCATTGTCCTCCTGGTGCTGTAAAACTTTTGTCATGTTATAGTGCAGGAGTCAGACAGACCCAATGCAGATGTATTGTAGATAGTCTTACGTTCTATCTTCTAGAGGTTAATTCCACAGCTCAAACTTGTAATTTCCTAGTCACTCGACAACAACTTCAAATATTATGCCAAGGCTCTATTTCTGTTGTTGTATTGTCATTGACTTACCGTATTGTTTTTTTTTTGAAAATAATGAAAACTTAAAATAGAAAAAAGCAATAACTAAAGAGTAAATGGAAAAGAACGATGAAATATGTTATCCAAAAACTGAAAAAGGTATCGGATTCAGATAGTTAGCTTTGGTGAGCATTAGACTTCTGAAGTATGATTTAAGCCTTTGGCTTTCTTCTGCATGAGATAAAGTTTATATTCATTTGTCTTATATTATTTATGTTTGGAGTTTGTTTAATATTTATCATGTATCTTTTTTTGTTTTTGTTTTTGTTTTTTTTAAGTTACTTATGAGTAAACAATATTCCATATTGATGTTCCAACAGGTGAAGTGTATGTTCAGTTATGGTCTTATCTTAAACCCCTTCATTTTGTTTGCAGCTTATTTTGATCTTTTAATCACATGTCCAATATAACATGTTAAAAGAACTAAATGTATTTTTTCTTTCTTCACATGCCCAATATAACATGTCAAAAGAACTAAATGTATTTTTTCTTTCTTTTAGTCAAAGAAGGCAAATCCTAAGGAATTGAATCCTTATCTAAAGGATGATGGAAGTGGTTACCCAGAAGAAAGGGATGGAGTTAACGTTGGTGCAAGCAAACTTCTATCGTCCTCCCTTGTTGGGGATGGAGGAGCAAGTTGGCGACTTAAAGCTTTAAAGCGTGCACAAGAGCAAGCAGCTCGAGAAGGACGAAGCTGCCAAGAGGTTTTATTCCCTTGCTTTTCACACATTCTTTATTTCCTCTGTCTATCCTATAAAAATGTTATTATTCTGTTAGGACAGAAGGATCTTTGCTTGGAAGAATAGAGGGAAGATAATTAGTTTGGGAAATGTGTAAGTGTAGTGAGAGGACCATTAGCATTTGGGAACTGAACATTTGCTATGTTGTTGTAGAATGATGAAACCCTTGTAAGGAGAATTGTCTCCTCCTGTTGATATTATTTCATTCTATAATAACAGATTCATTCTCATTCTTTCTATTTACCATTCCGTTCTTTAATTAACGTTCAATGGTTCTTAATGTATTCACTATATGGATACGTACAGGTTGTGGGAGAAAGGTGGGGTTCTCTTGGTGAGTTGACTGCATCTGTTGCATCTAAAGCAGCTGCACCAGCTCGGGCTCATCTACATGCTATAAGAAGCAGACAAAGAGGGGTAACTGAAGAAAATTCACCAGATTCTGATAAGCCTATCCAACGGGATTCTAAAAGGGTAACTTTGAGAATAGATCGAAACTATTGCATATGTCTTGTTTTTTAGATGAATTATATTTTCAATATATTATTATTTGTGTTAATCTCATTTATGAAGCATATTCCATTGCACTTCACTGAATTTCGCTTATGAAATACTGGCAGGACTACATAAAAAATACTCCTTCTCGGGACCGTGAAATGAAAGCACCTAAAGTGCAAGATTCATTATCTTGGAGAAAGCGCAAAAGCCAGTTTGCTGTAGCTGAGGGTGCTGAGATCATCGCTGCTGCAGCATCTAGCTTAAATAAATTTGCTAATGATGGAAGCTTTATGCGTGAGTTAGTTAGCAAGGAGAGTAGTAACTCCGATGGCTCTGTTTTGGAAAGTTTTGAAGCGGAAAAGGTTTCTCCAGATGTAGACATACCTGGTGAAAGAAAAGCAGTAGTACAGAATAACATGAGTGCAAACCAGTTGGCAGCTAAGGCCATGCAACTTCGTTTGAAAGGAAAAAATGAAGAAGCTGATAGACTAATGGTAAGCCCATAAGACGGGAGAGTATGCATTCTTTTCTAGATTTTGTTTGTCTCTTAATATACTGTCTACAAAAACATATCCTTCTAGCCTCGTGATTATTTTTTTGTTCAAAAAAAAAAAGCCTCGTGATTATTTTTATTAAGTTGTGTGCTTTTCCATTATTGTTTTGGTGGGCAGGAAGAGGCAAGGGTTTTGAACACAAAGCAGGGAAATGAAGATCATGAAATTAGATCAAGAACTGAGGGAAGTTCTAGTTCTAGAAGGTATTTTTCAAATTCTGTATACTATGTTTTTTGTTCTCTGTAATCCCCTACATATTTGTTTCATGTATTTCGGATGTGAAAACATTGTGGCTAAGATGGATTTCTTGTATTGCAGCAAAACATAGTGTGACTGATTGTCTTTGATTTTTTTTTTTTTTGTTTAATAGTTTATATTTCTTTGTAAGTTCATAAACTTGTCTGACGTTTTGCATCAATAGTACCGGTTTCTACAAATTTATGCATAAAATTTTACCTTTCTTATGATTTCAATGGTGACATTTTACTTTATTCAAGGTATGCTATGCAGAGGATATCTTCTGAGCAGAAGAAAGGAGAGGATGATGCTGATATGCATCTTGCTCACAATATAATGCAGAACAAGCAGTTTAAGGTTTATACTCAGGCGGATGATGAATATGACTTTGAGACTGGTCCAAGCAAAAAGAGTAGAAAGAAGCAAGGAGGTGAAGACCCCAAGAATATCCAAAAAAAGATGAATGCAAATCGGTTCTTGACCCAGAAAGAACGTTGCCTCTTTTGTCTAGAGAATCCAAATCGGCCTATGCATCTTGTTGTGTCCATTGCAAATTTCACATATCTTATGTTGCCACAGTGGCAGCCCGTGGTGCCTGGTCATTGCTGTATTTTACCCATTCACGTGAGTTTAATTTCTACTGCTATTAGTGTTTCTTTAAGAGTTGAAGCCAGTTGAAAAAACCATAAGCTTGTTGTTCGTTGAACACAATCCCTGCAATATAATTGATTAAGTTCTTTGGTCGGCGAGTAAAATATTGAAGTAGATGATAGTAACAAAGACTTAAATGAATTTGATACCTTATTGAAATTGGTTAAATTACATGGTAACTTGTAATATTATTGCGTGTTCGGAAGTAACCTTGGATCCAAATATGGTTTATGATAGAGCATTATGGCGTACTTTGATCCATGTAGCCGACCCCACTTGGTGGGGTAAGGCTTGGTGGTTGTTGTTGTTGTTTGGAAGTAACCTTAAGATATATAATGGTGAATTAAATTTTAAGTGGATGAACTAATATTTAGTCAGTTGATTTGTATCATAACGGACTTAATATATTTATTTCATAGTCTCTAATTTGCAACTTCTTATCCTTAATATGACAGCATGAATCAGCTACAAGAACGGTGGATGATAATGTGTGGGGAGAAATCCGAAATTTCAAAAAATGTCTTATTATGATGTTTGCAAAGCAAGATAAAGAAGTAGTGTTTCTTGAAACTGTGATGGGATTGGCGCAGCAACGGAGGCATTGCATGGTTGAGTGCTTTCCTGTACCCAAAGATGTTGCTAAAGAGGCTCCTTTATACTTTAAGAAGGTCAGTTGTTGAACATTTTTATATTCTGTAGTTCTGCATTGCTTGTCTTTGTCTCTCCAGAATCAGTGCTTTTCTTATATGCATCCTTGAAATGAACTATTCATCTATTAAGCTGCACATAGTTGTATTACTTGTTCTAAAAGTCAGCATGAAAACATCATCAGTGTTCCATGGGGAGTAAGGGATTTGAGGGATGTTGGATCGTGGTGGAGGGTTTGGGGAAATGGTTCTTTCACAATTCATATATTATTATGAGAAATGCGGGAATGTATTCAGAGCATTTAAGGATCATAGAATGATATAACTAGTTTCTTGACTAGTTCCCATAGCGTTTCTATAATAAGGTCCATTTATTTATTTATTTTGTTTGTGTAAACTCTGTATTAGAAGTTACATTTGACACTATAATTACTAACTTTTGGGGAGTAACTTGTTAAATGGTTCTAGCATGGTTAAAATTATCTACAGAGTTTCTTTGGATGCCCTTCTTTGATGAAATGTCAAATAGATAGTATTCAAACTGCAAATTGGTCCATGAAGTTGAATGAGAAAACCATGTAAATTATCAAGCATTTACATTTATTTCCTTGTGTGTTTGTCAACTTTTTGGGGTGTCTTGGGTTTTAAAGTACCTAGTCATGTATCGTACTTAGAGAAAGATGACATTAGGTTCCCTTATACGAGGACATTTGGATGACCTAACTAGGAGACGATGGGCCACAAATTTGATACCAAAAGGTGAAGCATACCTGCTTCATTACTCTATATTGAACCTTAAAAAGTTTTAACCATACAGTCTACACTGATTGCTGCTTCATTTTTGTTTCCATGGAGTACTCGGACTCAATGCATGAGGTGGTTTAGTGTGAGATTTGCCGGATCTTAAAACTGCAGATGTCATGTTTAGATATGGTCATGTGGACAATTGAACCTAAAATCTGAGACATCCATCCCACCCCCCAAAAAAAAAAACTAGATGTCAAATAAAGGACAGGGATGATAGTGGCACGTGTTGGGAATTCTTCATGATTCACGACTTCACGTGGCAAATTGCAAGTTTGACATGCTACCCACGTTGAGTTTGATTTAAATTCACAAGCTTTTAAACTGGTTCGGTATGATTAATTACAGTTAAATTAGTTGCATATAGTGAACAATTAACCACATCATGTATAAAACTGGATCAGTTTCTACCAGTTTAAATGGTTTCATCTTATTTTGTTTTGCGGTGTAGAAGTTTATCTGCACAACCTGAACTATGTCATTATATGATGTTCTTCTGATGATTGCGCCACATGTGGTCATTAAAACTTAAAAGCGAACCTGCAGAATCTGAACAGGGTTGTTAAAATGATGTACTATTATGTTCCATCTACCCACCTTGTTTTCCTTTGGGATCATTGATATTCCAGTATAGCATTTGGTGAAAAATTCGTTTTGTTGTTTGTTGACTGCACTTTTCATTCTATCCATTATTTCAATTGTGTTTCAAGCCATAAACTCACCGTCCGTTTTTAAATTTGCTTCAATCACAGGCAATTGATGAAGCAGAAGATGAGTGGAGCCAGCACAATGCCAAAAGACTCATTGATACGAGTCAGAAGGGTTTACGCAACTCAATTCCCAAGGGCTTTCCTTATTTTCATGTAGAATTTGGTCTAAACAAAGGTTTTGTCCATGTTATTGATGATGAAAAGGAGTTTAAGAGTAGTCTTGGGTTGAATGTCATTAGAGGCATGCTGCATTTGGCTGAGGAAGACATGTATAGACGTCAAAGGTACGAGAAAGTGGAGGTGCAAAAGCAAGCTGTTGCTAGCTTTTCCAAAGACTGGGATCATTTTGACTGGACAAAGCAACTAAATGAAACATCGTAG

Protein sequence

>MS.gene065666.t1

MLSGVKFIPRDQVQDEDLDKDSVSKERKKSDIRRKKDKRKGKSSRNISSSDDDQLDKIKKGSRKKKWYSSDENSSFYTTESESDRDDKKRRRKGKKKRDGRSRSGKKEYTSEEDSSSSDGSDGSLGRQRKHQKSRTKDGSGENKIKGEATDIARKEMGLDWMLRSESKRPAVSETKEILPEEVPVEESKKANPKELNPYLKDDGSGYPEERDGVNVGASKLLSSSLVGDGGASWRLKALKRAQEQAAREGRSCQEVVGERWGSLGELTASVASKAAAPARAHLHAIRSRQRGVTEENSPDSDKPIQRDSKRDYIKNTPSRDREMKAPKVQDSLSWRKRKSQFAVAEGAEIIAAAASSLNKFANDGSFMRELVSKESSNSDGSVLESFEAEKVSPDVDIPGERKAVVQNNMSANQLAAKAMQLRLKGKNEEADRLMEEARVLNTKQGNEDHEIRSRTEGSSSSRRYAMQRISSEQKKGEDDADMHLAHNIMQNKQFKVYTQADDEYDFETGPSKKSRKKQGGEDPKNIQKKMNANRFLTQKERCLFCLENPNRPMHLVVSIANFTYLMLPQWQPVVPGHCCILPIHHESATRTVDDNVWGEIRNFKKCLIMMFAKQDKEVVFLETVMGLAQQRRHCMVECFPVPKDVAKEAPLYFKKAIDEAEDEWSQHNAKRLIDTSQKGLRNSIPKGFPYFHVEFGLNKGFVHVIDDEKEFKSSLGLNVIRGMLHLAEEDMYRRQRYEKVEVQKQAVASFSKDWDHFDWTKQLNETS