Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065680.t1 | XP_013470075.1 | 96.6 | 145 | 5 | 0 | 1 | 145 | 1 | 145 | 4.50E-67 | 263.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065680.t1 | Q9M7I9 | 54.8 | 146 | 65 | 1 | 1 | 145 | 1 | 146 | 4.1e-32 | 139.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065680.t1 | A0A072VRP5 | 96.6 | 145 | 5 | 0 | 1 | 145 | 1 | 145 | 3.3e-67 | 263.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene065680 | 0.83373 | 4.51E-56 | -1.69E-46 |
| MS.gene049171 | MS.gene065680 | 0.809332 | 1.99E-50 | -1.69E-46 |
| MS.gene049222 | MS.gene065680 | 0.814172 | 1.76E-51 | -1.69E-46 |
| MS.gene049427 | MS.gene065680 | 0.805225 | 1.48E-49 | -1.69E-46 |
| MS.gene049609 | MS.gene065680 | 0.812304 | 4.53E-51 | -1.69E-46 |
| MS.gene049805 | MS.gene065680 | 0.83585 | 1.32E-56 | -1.69E-46 |
| MS.gene050163 | MS.gene065680 | 0.805284 | 1.44E-49 | -1.69E-46 |
| MS.gene050404 | MS.gene065680 | 0.826369 | 2.82E-54 | -1.69E-46 |
| MS.gene050406 | MS.gene065680 | 0.812832 | 3.48E-51 | -1.69E-46 |
| MS.gene050529 | MS.gene065680 | 0.827445 | 1.56E-54 | -1.69E-46 |
| MS.gene050538 | MS.gene065680 | 0.835046 | 2.11E-56 | -1.69E-46 |
| MS.gene050670 | MS.gene065680 | 0.80652 | 7.91E-50 | -1.69E-46 |
| MS.gene050747 | MS.gene065680 | 0.816875 | 4.41E-52 | -1.69E-46 |
| MS.gene050772 | MS.gene065680 | 0.805964 | 1.03E-49 | -1.69E-46 |
| MS.gene05080 | MS.gene065680 | 0.815649 | 8.30E-52 | -1.69E-46 |
| MS.gene050812 | MS.gene065680 | 0.832644 | 8.40E-56 | -1.69E-46 |
| MS.gene050950 | MS.gene065680 | 0.812285 | 4.58E-51 | -1.69E-46 |
| MS.gene05100 | MS.gene065680 | 0.817637 | 2.97E-52 | -1.69E-46 |
| MS.gene05105 | MS.gene065680 | 0.832739 | 7.96E-56 | -1.69E-46 |
| MS.gene051228 | MS.gene065680 | 0.823674 | 1.22E-53 | -1.69E-46 |
| MS.gene051617 | MS.gene065680 | 0.834749 | 2.50E-56 | -1.69E-46 |
| MS.gene051666 | MS.gene065680 | 0.865215 | 6.94E-65 | -1.69E-46 |
| MS.gene051810 | MS.gene065680 | 0.820486 | 6.69E-53 | -1.69E-46 |
| MS.gene051907 | MS.gene065680 | -0.800979 | 1.12E-48 | -1.69E-46 |
| MS.gene052050 | MS.gene065680 | -0.816175 | 6.33E-52 | -1.69E-46 |
| MS.gene052290 | MS.gene065680 | 0.836415 | 9.49E-57 | -1.69E-46 |
| MS.gene052310 | MS.gene065680 | 0.816361 | 5.75E-52 | -1.69E-46 |
| MS.gene052379 | MS.gene065680 | 0.817943 | 2.54E-52 | -1.69E-46 |
| MS.gene052481 | MS.gene065680 | 0.813082 | 3.06E-51 | -1.69E-46 |
| MS.gene052484 | MS.gene065680 | 0.805372 | 1.38E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene065680 | 0.831568 | 1.55E-55 | -1.69E-46 |
| MS.gene052870 | MS.gene065680 | 0.807621 | 4.62E-50 | -1.69E-46 |
| MS.gene052872 | MS.gene065680 | 0.813079 | 3.07E-51 | -1.69E-46 |
| MS.gene053009 | MS.gene065680 | 0.826508 | 2.61E-54 | -1.69E-46 |
| MS.gene053103 | MS.gene065680 | 0.839734 | 1.33E-57 | -1.69E-46 |
| MS.gene053104 | MS.gene065680 | 0.830777 | 2.43E-55 | -1.69E-46 |
| MS.gene053207 | MS.gene065680 | 0.800427 | 1.45E-48 | -1.69E-46 |
| MS.gene053322 | MS.gene065680 | 0.834623 | 2.69E-56 | -1.69E-46 |
| MS.gene053579 | MS.gene065680 | 0.835178 | 1.95E-56 | -1.69E-46 |
| MS.gene053632 | MS.gene065680 | 0.855254 | 7.14E-62 | -1.69E-46 |
| MS.gene053916 | MS.gene065680 | 0.812606 | 3.90E-51 | -1.69E-46 |
| MS.gene054408 | MS.gene065680 | 0.819513 | 1.12E-52 | -1.69E-46 |
| MS.gene054642 | MS.gene065680 | 0.819227 | 1.30E-52 | -1.69E-46 |
| MS.gene054884 | MS.gene065680 | -0.80139 | 9.21E-49 | -1.69E-46 |
| MS.gene05505 | MS.gene065680 | 0.804506 | 2.09E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene065680 | 0.824002 | 1.02E-53 | -1.69E-46 |
| MS.gene055289 | MS.gene065680 | 0.822392 | 2.43E-53 | -1.69E-46 |
| MS.gene055370 | MS.gene065680 | 0.838911 | 2.17E-57 | -1.69E-46 |
| MS.gene055397 | MS.gene065680 | 0.808026 | 3.79E-50 | -1.69E-46 |
| MS.gene055412 | MS.gene065680 | 0.806409 | 8.34E-50 | -1.69E-46 |
| MS.gene055502 | MS.gene065680 | 0.808454 | 3.07E-50 | -1.69E-46 |
| MS.gene055748 | MS.gene065680 | 0.800582 | 1.35E-48 | -1.69E-46 |
| MS.gene05592 | MS.gene065680 | 0.803225 | 3.86E-49 | -1.69E-46 |
| MS.gene056609 | MS.gene065680 | 0.805084 | 1.58E-49 | -1.69E-46 |
| MS.gene056633 | MS.gene065680 | 0.810215 | 1.29E-50 | -1.69E-46 |
| MS.gene056659 | MS.gene065680 | 0.805309 | 1.42E-49 | -1.69E-46 |
| MS.gene056664 | MS.gene065680 | 0.80143 | 9.04E-49 | -1.69E-46 |
| MS.gene056897 | MS.gene065680 | 0.827205 | 1.78E-54 | -1.69E-46 |
| MS.gene056903 | MS.gene065680 | 0.830822 | 2.37E-55 | -1.69E-46 |
| MS.gene057048 | MS.gene065680 | 0.810109 | 1.36E-50 | -1.69E-46 |
| MS.gene057124 | MS.gene065680 | 0.813781 | 2.15E-51 | -1.69E-46 |
| MS.gene057129 | MS.gene065680 | 0.851325 | 9.55E-61 | -1.69E-46 |
| MS.gene057146 | MS.gene065680 | 0.800882 | 1.17E-48 | -1.69E-46 |
| MS.gene057246 | MS.gene065680 | 0.839554 | 1.48E-57 | -1.69E-46 |
| MS.gene057658 | MS.gene065680 | 0.812869 | 3.41E-51 | -1.69E-46 |
| MS.gene058082 | MS.gene065680 | 0.812352 | 4.43E-51 | -1.69E-46 |
| MS.gene058130 | MS.gene065680 | 0.834789 | 2.45E-56 | -1.69E-46 |
| MS.gene058158 | MS.gene065680 | -0.811113 | 8.23E-51 | -1.69E-46 |
| MS.gene058233 | MS.gene065680 | 0.840534 | 8.21E-58 | -1.69E-46 |
| MS.gene058293 | MS.gene065680 | 0.816003 | 6.92E-52 | -1.69E-46 |
| MS.gene058419 | MS.gene065680 | 0.821377 | 4.17E-53 | -1.69E-46 |
| MS.gene058544 | MS.gene065680 | 0.820355 | 7.16E-53 | -1.69E-46 |
| MS.gene058660 | MS.gene065680 | 0.800842 | 1.19E-48 | -1.69E-46 |
| MS.gene058723 | MS.gene065680 | 0.840879 | 6.67E-58 | -1.69E-46 |
| MS.gene058746 | MS.gene065680 | 0.822879 | 1.87E-53 | -1.69E-46 |
| MS.gene058748 | MS.gene065680 | 0.803652 | 3.15E-49 | -1.69E-46 |
| MS.gene058838 | MS.gene065680 | 0.819567 | 1.09E-52 | -1.69E-46 |
| MS.gene059023 | MS.gene065680 | 0.804549 | 2.05E-49 | -1.69E-46 |
| MS.gene05914 | MS.gene065680 | 0.839894 | 1.21E-57 | -1.69E-46 |
| MS.gene05934 | MS.gene065680 | 0.815191 | 1.05E-51 | -1.69E-46 |
| MS.gene059536 | MS.gene065680 | 0.819905 | 9.08E-53 | -1.69E-46 |
| MS.gene059677 | MS.gene065680 | 0.811006 | 8.69E-51 | -1.69E-46 |
| MS.gene059688 | MS.gene065680 | 0.823526 | 1.32E-53 | -1.69E-46 |
| MS.gene059692 | MS.gene065680 | 0.824801 | 6.63E-54 | -1.69E-46 |
| MS.gene059695 | MS.gene065680 | 0.825275 | 5.12E-54 | -1.69E-46 |
| MS.gene059718 | MS.gene065680 | 0.804823 | 1.80E-49 | -1.69E-46 |
| MS.gene059960 | MS.gene065680 | 0.841684 | 4.09E-58 | -1.69E-46 |
| MS.gene060804 | MS.gene065680 | 0.800296 | 1.54E-48 | -1.69E-46 |
| MS.gene06092 | MS.gene065680 | 0.844126 | 9.17E-59 | -1.69E-46 |
| MS.gene061041 | MS.gene065680 | 0.820912 | 5.34E-53 | -1.69E-46 |
| MS.gene061150 | MS.gene065680 | 0.821775 | 3.37E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065680.t1 | MTR_1g107490 | 96.552 | 145 | 5 | 0 | 1 | 145 | 1 | 145 | 2.51e-98 | 279 |
| MS.gene065680.t1 | MTR_1g107490 | 94.697 | 132 | 7 | 0 | 1 | 132 | 1 | 132 | 1.91e-87 | 252 |
| MS.gene065680.t1 | MTR_1g107490 | 93.805 | 113 | 7 | 0 | 1 | 113 | 1 | 113 | 1.54e-73 | 215 |
| MS.gene065680.t1 | MTR_1g107490 | 95.495 | 111 | 5 | 0 | 1 | 111 | 1 | 111 | 2.20e-73 | 216 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065680.t1 | AT4G34190 | 56.164 | 146 | 61 | 2 | 3 | 145 | 1 | 146 | 9.75e-46 | 146 |
Find 48 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCGCATCTTATCGAAAC+TGG | 0.316015 | 1.4:-82918303 | None:intergenic |
| ATTACTGTTGAAATTACTTC+TGG | 0.319891 | 1.4:+82918396 | MS.gene065680:CDS |
| ATGGGAACGGTTTGGATGTA+TGG | 0.346112 | 1.4:+82918337 | MS.gene065680:CDS |
| GCAGGAACCAAAGTTGGTTT+AGG | 0.354670 | 1.4:-82917356 | None:intergenic |
| GGAAATTGAGCAGAGGTTGC+AGG | 0.362163 | 1.4:-82917335 | None:intergenic |
| ACAGTTGCCTTGGCCGTAAC+AGG | 0.365155 | 1.4:+82918992 | MS.gene065680:CDS |
| GCTGGAGCATCCTTTGCAAC+TGG | 0.383050 | 1.4:+82917377 | MS.gene065680:CDS |
| TGATCCGGAGCAATCATAAA+AGG | 0.388718 | 1.4:+82918259 | MS.gene065680:CDS |
| TCAATTTCCTAAACCAACTT+TGG | 0.392958 | 1.4:+82917349 | MS.gene065680:CDS |
| GTTGAAATTACTTCTGGAAA+GGG | 0.425412 | 1.4:+82918402 | MS.gene065680:CDS |
| ATCAGTTCTCTGAGGCTGAC+TGG | 0.425625 | 1.4:-82919048 | None:intergenic |
| GTTTGGATGTATGGCTTGGC+CGG | 0.431706 | 1.4:+82918346 | MS.gene065680:CDS |
| TCTCTTTCTGTCTCTCTTCG+TGG | 0.434411 | 1.4:+82917175 | MS.gene065680:CDS |
| AAACCAACTTTGGTTCCTGC+TGG | 0.456120 | 1.4:+82917359 | MS.gene065680:CDS |
| ATCCAAACCGTTCCCATCCT+TGG | 0.459057 | 1.4:-82918331 | None:intergenic |
| CACCAAGGATGGGAACGGTT+TGG | 0.459933 | 1.4:+82918329 | MS.gene065680:CDS |
| AGAAGTAATTTCAACAGTAA+TGG | 0.474215 | 1.4:-82918394 | None:intergenic |
| CTTGGCCGGGTAGCCATGGT+TGG | 0.479318 | 1.4:+82918360 | MS.gene065680:CDS |
| AATTAGAAAAGTTACTTAGT+GGG | 0.486476 | 1.4:-82917403 | None:intergenic |
| TGCGAGCAAAACACCAAGGA+TGG | 0.496748 | 1.4:+82918318 | MS.gene065680:CDS |
| GACACCCACCAGTCCTGTTA+CGG | 0.499084 | 1.4:-82919005 | None:intergenic |
| TGCCTTGGCCGTAACAGGAC+TGG | 0.500300 | 1.4:+82918997 | MS.gene065680:CDS |
| TGTTGAAATTACTTCTGGAA+AGG | 0.500335 | 1.4:+82918401 | MS.gene065680:CDS |
| TCCACTGCCTACAGTTGCCT+TGG | 0.503726 | 1.4:+82918982 | MS.gene065680:CDS |
| CACCAGTCCTGTTACGGCCA+AGG | 0.507970 | 1.4:-82918999 | None:intergenic |
| AACGGTTTGGATGTATGGCT+TGG | 0.508500 | 1.4:+82918342 | MS.gene065680:CDS |
| GCTCCAGCAGGAACCAAAGT+TGG | 0.511042 | 1.4:-82917362 | None:intergenic |
| TTGACTTGTCTGTAGTGATC+CGG | 0.516376 | 1.4:+82918244 | MS.gene065680:intron |
| TTTGGATGTATGGCTTGGCC+GGG | 0.518757 | 1.4:+82918347 | MS.gene065680:CDS |
| GAAATTGAGCAGAGGTTGCA+GGG | 0.522794 | 1.4:-82917334 | None:intergenic |
| CAAAACCAACCATGGCTACC+CGG | 0.549263 | 1.4:-82918365 | None:intergenic |
| AGAGACAGAAAGAGAAGCAG+AGG | 0.554751 | 1.4:-82917167 | None:intergenic |
| GTTGCAAAGGATGCTCCAGC+AGG | 0.563242 | 1.4:-82917374 | None:intergenic |
| GCCAAGGCAACTGTAGGCAG+TGG | 0.574143 | 1.4:-82918983 | None:intergenic |
| ATTAGAAAAGTTACTTAGTG+GGG | 0.581454 | 1.4:-82917402 | None:intergenic |
| CTTGGCCGTAACAGGACTGG+TGG | 0.598603 | 1.4:+82919000 | MS.gene065680:CDS |
| ATGGCTTGGCCGGGTAGCCA+TGG | 0.601341 | 1.4:+82918356 | MS.gene065680:CDS |
| TAGTGGGGAACCAGTTGCAA+AGG | 0.603632 | 1.4:-82917387 | None:intergenic |
| TGGTTTAGGAAATTGAGCAG+AGG | 0.606409 | 1.4:-82917342 | None:intergenic |
| GTTACGGCCAAGGCAACTGT+AGG | 0.623177 | 1.4:-82918989 | None:intergenic |
| GCGAGCAAAACACCAAGGAT+GGG | 0.623826 | 1.4:+82918319 | MS.gene065680:CDS |
| GGCCACTGCAAAACCAACCA+TGG | 0.623933 | 1.4:-82918373 | None:intergenic |
| TTCTGGAAAGGGACTCCTAG+AGG | 0.632552 | 1.4:+82918413 | MS.gene065680:CDS |
| TTGAGCTTGAGCAAGTGCCA+TGG | 0.644960 | 1.4:-82917143 | None:intergenic |
| CAAAACACCAAGGATGGGAA+CGG | 0.652602 | 1.4:+82918324 | MS.gene065680:CDS |
| TTGGCCGTAACAGGACTGGT+GGG | 0.657190 | 1.4:+82919001 | MS.gene065680:CDS |
| AATATTTAATCAGTTCTCTG+AGG | 0.658496 | 1.4:-82919056 | None:intergenic |
| AAGATGCGAGCAAAACACCA+AGG | 0.726429 | 1.4:+82918314 | MS.gene065680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTATTAATTTTTTAA+AGG | + | chr1.4:82917438-82917457 | MS.gene065680:intron | 0.0% |
| !! | ATAAAAAATAAATGATCTAT+AGG | + | chr1.4:82917649-82917668 | MS.gene065680:intron | 10.0% |
| !! | AAAAAAAAAAAAAATGGAAC+AGG | - | chr1.4:82917221-82917240 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAATGGAACA+GGG | - | chr1.4:82917220-82917239 | None:intergenic | 15.0% |
| !! | CTCTCAAAAAAAAAAAAAAA+TGG | - | chr1.4:82917227-82917246 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAATGGAACAG+GGG | - | chr1.4:82917219-82917238 | None:intergenic | 20.0% |
| !! | AATTAGAAAAGTTACTTAGT+GGG | - | chr1.4:82917406-82917425 | None:intergenic | 20.0% |
| !! | TCTAAAAGCCAATATAATAT+CGG | - | chr1.4:82917517-82917536 | None:intergenic | 20.0% |
| !!! | AAATGACACTCATTTTAATT+CGG | + | chr1.4:82917968-82917987 | MS.gene065680:intron | 20.0% |
| !!! | AATTAAAATGAGTGTCATTT+AGG | - | chr1.4:82917968-82917987 | None:intergenic | 20.0% |
| !!! | AATTTCATTTTGTAGTATGA+GGG | + | chr1.4:82917536-82917555 | MS.gene065680:intron | 20.0% |
| ! | AAACGTAATAAAGTTCGTTA+CGG | - | chr1.4:82918835-82918854 | None:intergenic | 25.0% |
| ! | AGAAGTAATTTCAACAGTAA+TGG | - | chr1.4:82918397-82918416 | None:intergenic | 25.0% |
| ! | ATTACTGTTGAAATTACTTC+TGG | + | chr1.4:82918396-82918415 | MS.gene065680:CDS | 25.0% |
| ! | ATTAGAAAAGTTACTTAGTG+GGG | - | chr1.4:82917405-82917424 | None:intergenic | 25.0% |
| ! | GAATTAGAAAAGTTACTTAG+TGG | - | chr1.4:82917407-82917426 | None:intergenic | 25.0% |
| ! | TAATCTTATACAATAAGACG+CGG | + | chr1.4:82918040-82918059 | MS.gene065680:intron | 25.0% |
| ! | TAGATTAACTTCATAGTCTT+AGG | - | chr1.4:82918117-82918136 | None:intergenic | 25.0% |
| ! | TATTATACTATAGCATCGTT+TGG | + | chr1.4:82918008-82918027 | MS.gene065680:intron | 25.0% |
| ! | TTGTTGAAATAAGATTCGTT+AGG | + | chr1.4:82918207-82918226 | MS.gene065680:intron | 25.0% |
| !! | AGATTAACTTCATAGTCTTA+GGG | - | chr1.4:82918116-82918135 | None:intergenic | 25.0% |
| !! | GAATTTCATTTTGTAGTATG+AGG | + | chr1.4:82917535-82917554 | MS.gene065680:intron | 25.0% |
| !! | GTAATTAGTAGTACTACTTT+TGG | + | chr1.4:82917589-82917608 | MS.gene065680:intron | 25.0% |
| !! | TCCATCAAATGATTGATAAT+TGG | + | chr1.4:82918537-82918556 | MS.gene065680:intron | 25.0% |
| !!! | AACATTTGAGTTTTGACAAA+TGG | - | chr1.4:82918589-82918608 | None:intergenic | 25.0% |
| !!! | AATGACACTCATTTTAATTC+GGG | + | chr1.4:82917969-82917988 | MS.gene065680:intron | 25.0% |
| !!! | ACATTTGAGTTTTGACAAAT+GGG | - | chr1.4:82918588-82918607 | None:intergenic | 25.0% |
| ATTGAGTGCTACAATAGAAA+TGG | - | chr1.4:82917262-82917281 | None:intergenic | 30.0% | |
| CAAAACTCAAATGTTTGCTT+TGG | + | chr1.4:82918594-82918613 | MS.gene065680:intron | 30.0% | |
| CACTATAAAGTAAAGGAGAA+AGG | - | chr1.4:82918646-82918665 | None:intergenic | 30.0% | |
| CAGGCAATAATATTGAATAG+AGG | - | chr1.4:82917926-82917945 | None:intergenic | 30.0% | |
| CCATACACACTATAAAGTAA+AGG | - | chr1.4:82918653-82918672 | None:intergenic | 30.0% | |
| CCTTTACTTTATAGTGTGTA+TGG | + | chr1.4:82918650-82918669 | MS.gene065680:intron | 30.0% | |
| GCAATAATATTGAATAGAGG+AGG | - | chr1.4:82917923-82917942 | None:intergenic | 30.0% | |
| GCCAATTATCAATCATTTGA+TGG | - | chr1.4:82918541-82918560 | None:intergenic | 30.0% | |
| GTAACTCAAAGTTTACGTTA+TGG | - | chr1.4:82918451-82918470 | None:intergenic | 30.0% | |
| GTACTACTAATTACAAGCAA+AGG | - | chr1.4:82917583-82917602 | None:intergenic | 30.0% | |
| GTAGACTACCGATATTATAT+TGG | + | chr1.4:82917506-82917525 | MS.gene065680:intron | 30.0% | |
| TCAATTTCCTAAACCAACTT+TGG | + | chr1.4:82917349-82917368 | MS.gene065680:CDS | 30.0% | |
| ! | AATTCGGGTTTATTCACATT+TGG | + | chr1.4:82917984-82918003 | MS.gene065680:intron | 30.0% |
| ! | GATCTTTTAAGCTATTGAGT+TGG | + | chr1.4:82918709-82918728 | MS.gene065680:intron | 30.0% |
| ! | GATTAACTTCATAGTCTTAG+GGG | - | chr1.4:82918115-82918134 | None:intergenic | 30.0% |
| ! | GTTGAAATTACTTCTGGAAA+GGG | + | chr1.4:82918402-82918421 | MS.gene065680:CDS | 30.0% |
| ! | TGTTGAAATTACTTCTGGAA+AGG | + | chr1.4:82918401-82918420 | MS.gene065680:CDS | 30.0% |
| !! | ACTTTGATTTTGCAGAACTT+TGG | + | chr1.4:82918950-82918969 | MS.gene065680:intron | 30.0% |
| !! | ATGCAGATTTTGCTATAGAA+TGG | - | chr1.4:82917681-82917700 | None:intergenic | 30.0% |
| !! | ATTTGAGTTTTGACAAATGG+GGG | - | chr1.4:82918586-82918605 | None:intergenic | 30.0% |
| !! | CATTTGAGTTTTGACAAATG+GGG | - | chr1.4:82918587-82918606 | None:intergenic | 30.0% |
| !! | TGCAGATTTTGCTATAGAAT+GGG | - | chr1.4:82917680-82917699 | None:intergenic | 30.0% |
| !!! | ATGACTGAGTTCTTTGTTTT+TGG | + | chr1.4:82917882-82917901 | MS.gene065680:intron | 30.0% |
| !!! | TTGGTATTTTAGCTGCAATA+TGG | + | chr1.4:82918613-82918632 | MS.gene065680:intron | 30.0% |
| CTACAATAGAAATGGAACAG+GGG | - | chr1.4:82917254-82917273 | None:intergenic | 35.0% | |
| GAAAAGCTATGATGCTAGTT+AGG | + | chr1.4:82918159-82918178 | MS.gene065680:intron | 35.0% | |
| GCTACAATAGAAATGGAACA+GGG | - | chr1.4:82917255-82917274 | None:intergenic | 35.0% | |
| GTTAATCTATGATGCCAGTT+AGG | + | chr1.4:82918128-82918147 | MS.gene065680:intron | 35.0% | |
| TGCTACAATAGAAATGGAAC+AGG | - | chr1.4:82917256-82917275 | None:intergenic | 35.0% | |
| ! | ACTTCCTTTTATGATTGCTC+CGG | - | chr1.4:82918266-82918285 | None:intergenic | 35.0% |
| ! | ATTATTGCCTGCTTAGTTCT+TGG | + | chr1.4:82917935-82917954 | MS.gene065680:intron | 35.0% |
| ! | TTTGAAGCAACTGTGAGAAA+TGG | + | chr1.4:82917793-82917812 | MS.gene065680:intron | 35.0% |
| !! | GAGTTGGTGTAGTGATATAT+AGG | + | chr1.4:82918725-82918744 | MS.gene065680:intron | 35.0% |
| AACAGGGGATTGAGAGTAAT+GGG | - | chr1.4:82917204-82917223 | None:intergenic | 40.0% | |
| AAGAGAGGTTGAGATGAGTA+AGG | - | chr1.4:82918871-82918890 | None:intergenic | 40.0% | |
| ATTGTTGCCAAGAACTAAGC+AGG | - | chr1.4:82917945-82917964 | None:intergenic | 40.0% | |
| CTATGATGCTAGTTAGGCTT+CGG | + | chr1.4:82918165-82918184 | MS.gene065680:intron | 40.0% | |
| GCTAAACTGAGTGATAAGAG+AGG | - | chr1.4:82918886-82918905 | None:intergenic | 40.0% | |
| TATGATGCTAGTTAGGCTTC+GGG | + | chr1.4:82918166-82918185 | MS.gene065680:intron | 40.0% | |
| TGATCCGGAGCAATCATAAA+AGG | + | chr1.4:82918259-82918278 | MS.gene065680:CDS | 40.0% | |
| TGGTTTAGGAAATTGAGCAG+AGG | - | chr1.4:82917345-82917364 | None:intergenic | 40.0% | |
| ! | CTTTTCTTGCAATGCCTAAC+TGG | - | chr1.4:82918145-82918164 | None:intergenic | 40.0% |
| !! | TTGACTTGTCTGTAGTGATC+CGG | + | chr1.4:82918244-82918263 | MS.gene065680:intron | 40.0% |
| AAGATGCGAGCAAAACACCA+AGG | + | chr1.4:82918314-82918333 | MS.gene065680:CDS | 45.0% | |
| AGAGACAGAAAGAGAAGCAG+AGG | - | chr1.4:82917170-82917189 | None:intergenic | 45.0% | |
| ATGATGCTAGTTAGGCTTCG+GGG | + | chr1.4:82918167-82918186 | MS.gene065680:intron | 45.0% | |
| CAAAACACCAAGGATGGGAA+CGG | + | chr1.4:82918324-82918343 | MS.gene065680:CDS | 45.0% | |
| CGTTGAAACTTGCACTCACT+TGG | - | chr1.4:82918804-82918823 | None:intergenic | 45.0% | |
| GAAATTGAGCAGAGGTTGCA+GGG | - | chr1.4:82917337-82917356 | None:intergenic | 45.0% | |
| GAACAGGGGATTGAGAGTAA+TGG | - | chr1.4:82917205-82917224 | None:intergenic | 45.0% | |
| GAAGCAACTGTGAGAAATGG+TGG | + | chr1.4:82917796-82917815 | MS.gene065680:intron | 45.0% | |
| TCTCTTTCTGTCTCTCTTCG+TGG | + | chr1.4:82917175-82917194 | MS.gene065680:CDS | 45.0% | |
| TGCTCGCATCTTATCGAAAC+TGG | - | chr1.4:82918306-82918325 | None:intergenic | 45.0% | |
| TGGTGCGCAATATTACCTCT+AGG | - | chr1.4:82918431-82918450 | None:intergenic | 45.0% | |
| ! | AAACCAACTTTGGTTCCTGC+TGG | + | chr1.4:82917359-82917378 | MS.gene065680:CDS | 45.0% |
| ! | AACGGTTTGGATGTATGGCT+TGG | + | chr1.4:82918342-82918361 | MS.gene065680:CDS | 45.0% |
| ! | ATGGGAACGGTTTGGATGTA+TGG | + | chr1.4:82918337-82918356 | MS.gene065680:CDS | 45.0% |
| ! | GCAGGAACCAAAGTTGGTTT+AGG | - | chr1.4:82917359-82917378 | None:intergenic | 45.0% |
| ATCCAAACCGTTCCCATCCT+TGG | - | chr1.4:82918334-82918353 | None:intergenic | 50.0% | |
| CAAAACCAACCATGGCTACC+CGG | - | chr1.4:82918368-82918387 | None:intergenic | 50.0% | |
| GCGAGCAAAACACCAAGGAT+GGG | + | chr1.4:82918319-82918338 | MS.gene065680:CDS | 50.0% | |
| GCTCACAAGCTTCACTTGCT+CGG | - | chr1.4:82917766-82917785 | None:intergenic | 50.0% | |
| GGAAATTGAGCAGAGGTTGC+AGG | - | chr1.4:82917338-82917357 | None:intergenic | 50.0% | |
| TAGTGGGGAACCAGTTGCAA+AGG | - | chr1.4:82917390-82917409 | None:intergenic | 50.0% | |
| TGCGAGCAAAACACCAAGGA+TGG | + | chr1.4:82918318-82918337 | MS.gene065680:CDS | 50.0% | |
| ! | GTTTGGATGTATGGCTTGGC+CGG | + | chr1.4:82918346-82918365 | MS.gene065680:CDS | 50.0% |
| ! | TTCTGGAAAGGGACTCCTAG+AGG | + | chr1.4:82918413-82918432 | MS.gene065680:CDS | 50.0% |
| ! | TTTGGATGTATGGCTTGGCC+GGG | + | chr1.4:82918347-82918366 | MS.gene065680:CDS | 50.0% |
| !!! | AGCCATGGTTGGTTTTGCAG+TGG | + | chr1.4:82918371-82918390 | MS.gene065680:CDS | 50.0% |
| ACAGTTGCCTTGGCCGTAAC+AGG | + | chr1.4:82918992-82919011 | MS.gene065680:CDS | 55.0% | |
| CACCAAGGATGGGAACGGTT+TGG | + | chr1.4:82918329-82918348 | MS.gene065680:CDS | 55.0% | |
| GACACCCACCAGTCCTGTTA+CGG | - | chr1.4:82919008-82919027 | None:intergenic | 55.0% | |
| GCTCCAGCAGGAACCAAAGT+TGG | - | chr1.4:82917365-82917384 | None:intergenic | 55.0% | |
| GGCCACTGCAAAACCAACCA+TGG | - | chr1.4:82918376-82918395 | None:intergenic | 55.0% | |
| GTTACGGCCAAGGCAACTGT+AGG | - | chr1.4:82918992-82919011 | None:intergenic | 55.0% | |
| GTTGCAAAGGATGCTCCAGC+AGG | - | chr1.4:82917377-82917396 | None:intergenic | 55.0% | |
| TAGTTAGGCTTCGGGGAAGG+TGG | + | chr1.4:82918174-82918193 | MS.gene065680:intron | 55.0% | |
| TCCACTGCCTACAGTTGCCT+TGG | + | chr1.4:82918982-82919001 | MS.gene065680:CDS | 55.0% | |
| TGCTAGTTAGGCTTCGGGGA+AGG | + | chr1.4:82918171-82918190 | MS.gene065680:intron | 55.0% | |
| ! | GCTGGAGCATCCTTTGCAAC+TGG | + | chr1.4:82917377-82917396 | MS.gene065680:CDS | 55.0% |
| ! | TTGGCCGTAACAGGACTGGT+GGG | + | chr1.4:82919001-82919020 | MS.gene065680:CDS | 55.0% |
| CACCAGTCCTGTTACGGCCA+AGG | - | chr1.4:82919002-82919021 | None:intergenic | 60.0% | |
| CTTGGCCGTAACAGGACTGG+TGG | + | chr1.4:82919000-82919019 | MS.gene065680:CDS | 60.0% | |
| GCCAAGGCAACTGTAGGCAG+TGG | - | chr1.4:82918986-82919005 | None:intergenic | 60.0% | |
| TGCCTTGGCCGTAACAGGAC+TGG | + | chr1.4:82918997-82919016 | MS.gene065680:CDS | 60.0% | |
| CTTGGCCGGGTAGCCATGGT+TGG | + | chr1.4:82918360-82918379 | MS.gene065680:CDS | 65.0% | |
| ! | ATGGCTTGGCCGGGTAGCCA+TGG | + | chr1.4:82918356-82918375 | MS.gene065680:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 82917145 | 82919069 | 82917145 | ID=MS.gene065680 |
| chr1.4 | mRNA | 82917145 | 82919069 | 82917145 | ID=MS.gene065680.t1;Parent=MS.gene065680 |
| chr1.4 | exon | 82917145 | 82917196 | 82917145 | ID=MS.gene065680.t1.exon1;Parent=MS.gene065680.t1 |
| chr1.4 | CDS | 82917145 | 82917196 | 82917145 | ID=cds.MS.gene065680.t1;Parent=MS.gene065680.t1 |
| chr1.4 | exon | 82917306 | 82917410 | 82917306 | ID=MS.gene065680.t1.exon2;Parent=MS.gene065680.t1 |
| chr1.4 | CDS | 82917306 | 82917410 | 82917306 | ID=cds.MS.gene065680.t1;Parent=MS.gene065680.t1 |
| chr1.4 | exon | 82918259 | 82918434 | 82918259 | ID=MS.gene065680.t1.exon3;Parent=MS.gene065680.t1 |
| chr1.4 | CDS | 82918259 | 82918434 | 82918259 | ID=cds.MS.gene065680.t1;Parent=MS.gene065680.t1 |
| chr1.4 | exon | 82918965 | 82919069 | 82918965 | ID=MS.gene065680.t1.exon4;Parent=MS.gene065680.t1 |
| chr1.4 | CDS | 82918965 | 82919069 | 82918965 | ID=cds.MS.gene065680.t1;Parent=MS.gene065680.t1 |
| Gene Sequence |
| Protein sequence |
