AlfalfaGEDB | MS.gene31397

M. sativa cultivar XinJiangDaYe / MS.gene31397

KEGG: -
GO: -
PFAM: PF07899.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31397.t1	XP_013465204.2	81.6	196	35	1	696	890	701	896	3.00E-76	297

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31397.t1	Q5XV31	30.9	149	96	4	729	871	561	708	8.1e-06	54.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31397.t1	G7ZVK0	81.6	196	35	1	696	890	700	895	2.1e-76	297.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene31397	0.828758	7.52E-55	-1.69E-46
MS.gene049404	MS.gene31397	0.809518	1.82E-50	-1.69E-46
MS.gene049435	MS.gene31397	0.84148	4.63E-58	-1.69E-46
MS.gene049452	MS.gene31397	0.807957	3.92E-50	-1.69E-46
MS.gene049958	MS.gene31397	0.813155	2.95E-51	-1.69E-46
MS.gene050026	MS.gene31397	0.805024	1.63E-49	-1.69E-46
MS.gene050226	MS.gene31397	0.815972	7.03E-52	-1.69E-46
MS.gene050227	MS.gene31397	0.826397	2.77E-54	-1.69E-46
MS.gene050228	MS.gene31397	0.824715	6.95E-54	-1.69E-46
MS.gene050442	MS.gene31397	0.84277	2.11E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31397.t1	MTR_2g091015	91.973	897	62	4	2	890	1	895	0.0	1542
MS.gene31397.t1	MTR_2g091280	62.032	748	209	8	2	703	1	719	0.0	724
MS.gene31397.t1	MTR_2g093010	44.869	916	395	15	1	883	1	839	0.0	577
MS.gene31397.t1	MTR_2g093010	44.896	911	393	14	6	883	4	838	0.0	576
MS.gene31397.t1	MTR_2g091250	52.027	740	271	11	210	876	476	1204	0.0	568
MS.gene31397.t1	MTR_2g091250	42.327	808	326	17	8	716	19	785	8.76e-132	427
MS.gene31397.t1	MTR_7g056313	78.426	394	60	2	2	395	1	369	0.0	543
MS.gene31397.t1	MTR_7g056313	46.835	237	82	4	300	532	173	369	6.20e-36	140
MS.gene31397.t1	MTR_7g056313	50.510	196	96	1	422	616	174	369	2.23e-35	139
MS.gene31397.t1	MTR_7g056313	38.194	288	138	7	404	682	113	369	4.98e-28	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31397.t1	AT5G27220	28.112	747	438	30	182	860	85	800	4.08e-16	84.0
MS.gene31397.t1	AT5G27220	28.112	747	438	30	182	860	85	800	4.08e-16	84.0
MS.gene31397.t1	AT5G27220	28.112	747	438	30	182	860	85	800	5.61e-16	83.6
MS.gene31397.t1	AT5G27220	28.112	747	438	30	182	860	85	800	5.61e-16	83.6

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Find 165 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAGAGAAAGGAAATT+AGG	0.204823	2.4:-9410494	MS.gene31397:CDS
AAACTTGTTCCATCAATGGT+TGG	0.574021	2.4:+9408315	None:intergenic
AAAGAGCTCAAGTTAAAAGA+AGG	0.528411	2.4:-9408962	MS.gene31397:CDS
AAAGTTTATTTGCAAAACCC+AGG	0.539415	2.4:+9407902	None:intergenic
AAATAAGAGAAAGGAAATTA+GGG	0.395303	2.4:-9410493	MS.gene31397:CDS
AAATACTGAAAATTCTCTGG+TGG	0.614556	2.4:-9408046	MS.gene31397:CDS
AACTACACTGCCAGTTAAGA+GGG	0.568794	2.4:-9410769	MS.gene31397:CDS
AACTTGTAGACCAAATGAAG+GGG	0.638530	2.4:-9409810	MS.gene31397:CDS
AAGAGAAGCAAATTGAAGAA+CGG	0.637855	2.4:-9409030	MS.gene31397:CDS
AAGAGAAGCAACATGAGGGC+CGG	0.522529	2.4:-9409534	MS.gene31397:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGCTCAAGTTAAAAGA+AGG	-	chr2.4:9408738-9408757	MS.gene31397:intron	30.0%
AAAGTTTATTTGCAAAACCC+AGG	+	chr2.4:9409801-9409820	None:intergenic	30.0%
AAATACTGAAAATTCTCTGG+TGG	-	chr2.4:9409654-9409673	MS.gene31397:CDS	30.0%
AAGAAAACAGATGTGAAACA+CGG	+	chr2.4:9410199-9410218	None:intergenic	30.0%
AAGAGAAGCAAATTGAAGAA+CGG	-	chr2.4:9408670-9408689	MS.gene31397:intron	30.0%
AAGTTTATTTGCAAAACCCA+GGG	+	chr2.4:9409800-9409819	None:intergenic	30.0%
ACAAAATTGATGCCATTGAA+AGG	-	chr2.4:9407625-9407644	MS.gene31397:intron	30.0%
ACTAGAACTTATGTTTGTTC+TGG	-	chr2.4:9410821-9410840	MS.gene31397:CDS	30.0%
AGAAACAAAAAGAGAGTTAC+CGG	+	chr2.4:9409861-9409880	None:intergenic	30.0%
AGAACTAAAGACAAAAGAGT+TGG	-	chr2.4:9407354-9407373	MS.gene31397:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	9406758	9410964	9406758	ID=MS.gene31397
chr2.4	mRNA	9406758	9410964	9406758	ID=MS.gene31397.t1;Parent=MS.gene31397
chr2.4	exon	9408843	9410964	9408843	ID=MS.gene31397.t1.exon1;Parent=MS.gene31397.t1
chr2.4	CDS	9408843	9410964	9408843	ID=cds.MS.gene31397.t1;Parent=MS.gene31397.t1
chr2.4	exon	9407899	9408366	9407899	ID=MS.gene31397.t1.exon2;Parent=MS.gene31397.t1
chr2.4	CDS	9407899	9408366	9407899	ID=cds.MS.gene31397.t1;Parent=MS.gene31397.t1
chr2.4	exon	9406758	9406840	9406758	ID=MS.gene31397.t1.exon3;Parent=MS.gene31397.t1
chr2.4	CDS	9406758	9406840	9406758	ID=cds.MS.gene31397.t1;Parent=MS.gene31397.t1

Gene Sequence

>MS.gene31397

ATGATGGACGTTGTTGAGGTTTCTGATAAGCCAAAGTTTTGTGTTGGTGATGATGATGAAGATCACTTAAATTTTAAATGGCTAGCATCATTCGGTAAAAATACATCGCAATCAGCTTCTCGTGAAGATGATGATGATGCTTTATCAGCAAGGTTTCATAAGAAGAGGGATACAACTACACTGCCAGTTAAGAGGGTATTCGATGACAACAATTCCTTGTGTGGTTCGATGAAGAAATCCAAGGTGTCTCCAACACCATATGATGATTATGACGATGATGATGCTGATGATGATGATGACATGTCAACTGATAAATCATTTTCCACACTCAAAGAAGAACTTGTGCTGGTAGAAAAATCATTTGAGGATATCAGAAGCAAGACACAAGTAGAAGAGAGGAGATTGCAGTCCATAAAGAAAGATATTGAGGAGTGCTGCGAAGATCTTGAAAATAAGAGAAAGGAAATTAGGGATGTTGGAAGAATTAACGAAGCTCGCAAGAAAATGCAGGGGAAAATTGACGAATGTGTCAAGGATTTTGTAGCAAAGGAAGGGCAGCTCGGTTTGATGGAGGACTTGATTGGAGAGCACAAGAAAGAACTAAAGACAAAAGAGTTGGAACTTCGTCAAGTCATGGATAACATTTCAAAACAAAAGGAATTGGAAAGCCAAGTGAAGGAGCTGGTGAATGATTTGGTATCAAAACAGAAGCATTTCGAAAGCCATATTAAGGAGCTTGAGTCGAAAGAGAGGCAGCTTGAAGGCCGATTGAAGGAGCATGAATCAGAAGAAAAAGAATTTGAAGGCCGAGTGAATGAGCTGGTATCTAAAGAGAGGCATTTCAAAAGCGAGGTGGAGGAGATCCATACAAAATTGATGCCATTGAAAGGACAAGTTAAGGAACTTGCCTCTAAAGAGAAGCAACTGAATGGCCAAGTGAAGGAGCTGGAATCTAAAAAGAAACAGTTTGAGAACCGAATCAAGGAGCTTGAGTCAAAAGAGAAGCAGCATGAAGGCCGGGTGAAGGAGCATGAATCAAAAGAGAGAGAATTTGAAAGCCAAGTGATGGAGCAGCAATCTAAAAAGAAGCTGTTTGAAATCCAAGTCAAGGCGTTAGAGGCAAAAGAAAACCAACTTGTAGACCAAATGAAGGGGTTTAAATCAAAAGAGATGGAATTTGAAGGCCAATTGAAGGAAATGGTATTGAATCAAAAGGATTTTGATAGCCGAATGATGGATCTTGAGTCAAAAGTGAAGGAGCATGAATTGAAAGAGAAGGAATTTGAAGGTCGAGTCAAGGAGTTTGAATCAAAAAAGAAGGGATTTGAAGGCCGACTGAAGGATCTGGTGAATAACCTGGTATCTAAACAAAAGCATTTGAAAAGCCAAGCGAGCGAGCTTCATACAAAAGAGAAGCAACATGAGGGCCGGGTGATGGAGCATGAATCAAAAGTGAGAGAATTTGAAGGTAAAATGATGGATCTAGAATCTAAAATGAAGCAGTTTGAAAGCCAAGTGGAGGAGCTTAAATCAAAAGAAAGGCATACTCAAGGACAAGTTAAAGAACTTGAGTCTAAAGAGAAGCAACTTGATGGCCGACTGAAGGAGTTAAAGTCAAAAGAGGATGAATTTGAAGGCCGGGCGAAGGAGCTCGAATCTGAAAAGAAGCATTTTGAGAGCCGACAGAAGCAGCTCGAAACACAAGAAAAGCAATATGAAGAACAAATGAAGGAGTTGCAGTCAAAAGAAGAGGAATTCAAAGTACACTTGAAGGATTTTGAATCAAAGGATGAGGAGTTCGAAGGTCAAGTTAAGGAGCTCAAATCAAAAAAGAAGCAATTCGAAAACCAAGTTGAGGACTTCAAATCAAAAGAGAAGCAACTTGAACGCCAAGTCGAGGAATACAAATCAAAAGAGAAGCAAATTGAAGAACGGTGGAAAGAACTCGAGTCAAAAGAGAATAAGTTCAAAGTACTGGTCAAAGAGCTCAAGTTAAAAGAAGGACAAATCAAGGATCCTGGTTCAAAGCTGGATAAATTTGATGGACAATTGAAGGAGTCTGAGTTGACAGAGAAACAATTTGAATCATTAATAAACTATTTTGATGAGGAAAAAGAATCGGGTAAAAGTTCTTATTCATCTAGTTTATAGAAGTTTCATTTCAGCTGTTTCTTTTTATGATTCTGATATTTTTAATGATGCTAGTGTAGTATATCTTACTCTTCGTCCTGCCAAAAAAAATGTAGTATATATATCACACCCATACAGACACACTATAAAAAAAAATACAGTATATCTTATCTTACTCTTAGTCGAGTTGAAAAGCTTTGTCCAGTTTTTATATCACACATACGGACACACTGTCAAACTAATTTGGATTATATAAGTGCAACTATTTCTAGTCTTGTTTATAATTATTAATCAATTTAACACTATCTTTGGTGATTCAGTTAAGCTTCTATATTGACTTTGATTATAACAGTTAATATAATGATTTCTTCTCTCATCCATACATTCAAAAAATCCTATTGTCATCTGCATTTGCTGTTGCTTCTAAAAGTATGAGGGATCTTAATTCTCTGCTATCCAAATATGCAGTTGCATCTAACACGGATGATCAATTAAGTCCAACCATTGATGGAACAAGTTTGCAGTTGCTCCCAAGTGATGAAACTGTCATTCTAGTTAATCTGCAAGAATCATCAGATCCAGCAAAAGTTGTTTTGGATATAATACAGAACCCAATTATTCCACGGTGTAACGAGGGAGACCATTCTGTAATTGATGGTAGCAGCGTCTTTCTGCTAGAACAACTGATGAGAATCTCACCGAAGATTAAACCTGGTGTAAGAAAGGAAGCATTGAAGCTAGCACTTCATCTGAAAGCTAACATGAAAAATACTGAAAATTCTCTGGTGGTTCTCGGTTTTCTACTGCTTTTGTCAGTTTATGAATTGGTTACTTATTTCGATGAAGATGAAATCTTGGAGCTTTTCACATTTGTTGCTCAGCACAAGACAGCTGTGGAACTGTTTCAGACCCTGGGTTTTGCAAATAAACTTTCAGGTATGTTTTAATCTAGATATGGTTTGGTCAGTCACCGGTAACTCTCTTTTTGTTTCTATGTTTTGGTATTTTACATTATATGTTTATTAAAACCATATTTCATTTTTGGATCTTATCATTTATTGTGTGTTGTTTTGGCTTTTTATTCTTGTTGAAAAAATCAGTGTAAACTGTGAACTTATAGAAATTGATAGAATGTTGATTACATGTGTAACTCTTATGAGGTTATGGATCTTCTCTTGAATCCATATTGTTAGTGTTATCTCTTGATGTTTGAGAAAAAATTATATACAACATATTTATGTGATTATACAAATGTTCTTGATGAGGTTCAAATTTTATATCCTATTTTGAGAATGTGGACTCTTAGAACCGTGTTTCACATCTGTTTTCTTAATTTGGTATCTGGTTCTTTGGATGAACATGGAACCGTTGAGTATGTCTCATTGCTCCTGGAACGTCCATGTAGTGTAATATTATGGATAATGAATTCTAAGTGGTACATCGATTTGAACACAAATGGAGCCAAATTGGAAAATATAGCTAATGTATAAGTGTTCTGTGAATCTCGTTGAATTTATTTGTGTATAATAGTGTTATAAGATTCTGTTTTTTATCTGCTATCAGACAGAATGAGGTGGTTATGGCTATTCATGCTGAAAACCTAAAGTTGTTTGAGTATGAGATAGTAAAGGAACGGGTGAACTGAGTCCTTTTAAGAAATAGGACAACTCATGTTGAAATTTTATAAATTCAAATACTTTTGGATGATAAATAAAATCTGTGCAGGATATAAACAAAGATACTCAGATTGATATATTAGATGTTGGTAACTTGGTACGAAACGGAACTCGTGTAGTTGGCTTCATTTTGTTTCCCCTAATGCTTGGAAAATGAAATAGACTTCAAATTTATCTCTCTTCATGTATCTCTTCCGTGTTATAAATGGTTTGATGGATTTTGAATTATTCAGTCCAATTTTCTTGGTTTTTTGTTAACTAGAACTTATGTTTGTTCTGGTATGTTTTGATTAAGTGAAATTTTCTTGTACCTTACAGAATTTGTTGAGGATCTTATCAGGAAGAAGCAATTTGTTGTTCTTACTGCTTGGCTGAGAAGAATCAAAAAGTTTTTGTGCTAG

Protein sequence

>MS.gene31397.t1

MMDVVEVSDKPKFCVGDDDEDHLNFKWLASFGKNTSQSASREDDDDALSARFHKKRDTTTLPVKRVFDDNNSLCGSMKKSKVSPTPYDDYDDDDADDDDDMSTDKSFSTLKEELVLVEKSFEDIRSKTQVEERRLQSIKKDIEECCEDLENKRKEIRDVGRINEARKKMQGKIDECVKDFVAKEGQLGLMEDLIGEHKKELKTKELELRQVMDNISKQKELESQVKELVNDLVSKQKHFESHIKELESKERQLEGRLKEHESEEKEFEGRVNELVSKERHFKSEVEEIHTKLMPLKGQVKELASKEKQLNGQVKELESKKKQFENRIKELESKEKQHEGRVKEHESKEREFESQVMEQQSKKKLFEIQVKALEAKENQLVDQMKGFKSKEMEFEGQLKEMVLNQKDFDSRMMDLESKVKEHELKEKEFEGRVKEFESKKKGFEGRLKDLVNNLVSKQKHLKSQASELHTKEKQHEGRVMEHESKVREFEGKMMDLESKMKQFESQVEELKSKERHTQGQVKELESKEKQLDGRLKELKSKEDEFEGRAKELESEKKHFESRQKQLETQEKQYEEQMKELQSKEEEFKVHLKDFESKDEEFEGQVKELKSKKKQFENQVEDFKSKEKQLERQVEEYKSKEKQIEERWKELESKENKFKVLVKELKLKEGQIKDPGSKLDKFDGQLKESELTEKQFESLINYFDEEKESVASNTDDQLSPTIDGTSLQLLPSDETVILVNLQESSDPAKVVLDIIQNPIIPRCNEGDHSVIDGSSVFLLEQLMRISPKIKPGVRKEALKLALHLKANMKNTENSLVVLGFLLLLSVYELVTYFDEDEILELFTFVAQHKTAVELFQTLGFANKLSEFVEDLIRKKQFVVLTAWLRRIKKFLC