Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31519.t1 | KEH39069.1 | 94.7 | 302 | 16 | 0 | 1 | 302 | 1 | 302 | 1.10E-160 | 575.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31519.t1 | Q9HI69 | 27.1 | 299 | 187 | 8 | 9 | 297 | 6 | 283 | 4.8e-19 | 96.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31519.t1 | A0A072VAK5 | 94.7 | 302 | 16 | 0 | 1 | 302 | 1 | 302 | 8.1e-161 | 575.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene31519 | 0.833563 | 4.96E-56 | -1.69E-46 |
| MS.gene049151 | MS.gene31519 | 0.801374 | 9.28E-49 | -1.69E-46 |
| MS.gene049153 | MS.gene31519 | 0.828583 | 8.29E-55 | -1.69E-46 |
| MS.gene049297 | MS.gene31519 | 0.809285 | 2.04E-50 | -1.69E-46 |
| MS.gene04933 | MS.gene31519 | 0.819795 | 9.63E-53 | -1.69E-46 |
| MS.gene049346 | MS.gene31519 | 0.822708 | 2.05E-53 | -1.69E-46 |
| MS.gene049378 | MS.gene31519 | 0.861171 | 1.24E-63 | -1.69E-46 |
| MS.gene049426 | MS.gene31519 | 0.807116 | 5.91E-50 | -1.69E-46 |
| MS.gene049758 | MS.gene31519 | 0.86118 | 1.23E-63 | -1.69E-46 |
| MS.gene049910 | MS.gene31519 | 0.861749 | 8.24E-64 | -1.69E-46 |
| MS.gene049915 | MS.gene31519 | 0.803234 | 3.84E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene31519 | 0.846563 | 2.01E-59 | -1.69E-46 |
| MS.gene050227 | MS.gene31519 | 0.848142 | 7.40E-60 | -1.69E-46 |
| MS.gene050228 | MS.gene31519 | 0.846745 | 1.79E-59 | -1.69E-46 |
| MS.gene050301 | MS.gene31519 | 0.812763 | 3.60E-51 | -1.69E-46 |
| MS.gene050319 | MS.gene31519 | -0.817268 | 3.60E-52 | -1.69E-46 |
| MS.gene050330 | MS.gene31519 | -0.827585 | 1.44E-54 | -1.69E-46 |
| MS.gene050438 | MS.gene31519 | 0.802262 | 6.10E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene31519 | 0.821542 | 3.82E-53 | -1.69E-46 |
| MS.gene050558 | MS.gene31519 | 0.822547 | 2.23E-53 | -1.69E-46 |
| MS.gene050586 | MS.gene31519 | 0.811223 | 7.80E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene31519 | -0.827239 | 1.75E-54 | -1.69E-46 |
| MS.gene050642 | MS.gene31519 | 0.811477 | 6.86E-51 | -1.69E-46 |
| MS.gene050762 | MS.gene31519 | 0.800396 | 1.47E-48 | -1.69E-46 |
| MS.gene050763 | MS.gene31519 | 0.804369 | 2.23E-49 | -1.69E-46 |
| MS.gene050787 | MS.gene31519 | 0.834477 | 2.93E-56 | -1.69E-46 |
| MS.gene050820 | MS.gene31519 | 0.830373 | 3.05E-55 | -1.69E-46 |
| MS.gene05119 | MS.gene31519 | -0.83216 | 1.11E-55 | -1.69E-46 |
| MS.gene051663 | MS.gene31519 | 0.807179 | 5.73E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene31519 | 0.863383 | 2.59E-64 | -1.69E-46 |
| MS.gene051983 | MS.gene31519 | 0.838472 | 2.82E-57 | -1.69E-46 |
| MS.gene052077 | MS.gene31519 | 0.848469 | 6.01E-60 | -1.69E-46 |
| MS.gene052176 | MS.gene31519 | 0.831749 | 1.40E-55 | -1.69E-46 |
| MS.gene052253 | MS.gene31519 | 0.83635 | 9.86E-57 | -1.69E-46 |
| MS.gene052255 | MS.gene31519 | 0.810521 | 1.11E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene31519 | 0.800905 | 1.16E-48 | -1.69E-46 |
| MS.gene052389 | MS.gene31519 | 0.803539 | 3.32E-49 | -1.69E-46 |
| MS.gene053184 | MS.gene31519 | 0.808081 | 3.69E-50 | -1.69E-46 |
| MS.gene053630 | MS.gene31519 | 0.801306 | 9.58E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene31519 | 0.889768 | 1.80E-73 | -1.69E-46 |
| MS.gene054011 | MS.gene31519 | 0.810697 | 1.01E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene31519 | 0.815783 | 7.74E-52 | -1.69E-46 |
| MS.gene054184 | MS.gene31519 | 0.827788 | 1.29E-54 | -1.69E-46 |
| MS.gene054185 | MS.gene31519 | 0.825922 | 3.60E-54 | -1.69E-46 |
| MS.gene054349 | MS.gene31519 | 0.80647 | 8.10E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene31519 | 0.822366 | 2.46E-53 | -1.69E-46 |
| MS.gene054468 | MS.gene31519 | 0.807209 | 5.65E-50 | -1.69E-46 |
| MS.gene054473 | MS.gene31519 | 0.856869 | 2.40E-62 | -1.69E-46 |
| MS.gene054542 | MS.gene31519 | 0.816611 | 5.06E-52 | -1.69E-46 |
| MS.gene054667 | MS.gene31519 | 0.809483 | 1.85E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene31519 | 0.878981 | 1.81E-69 | -1.69E-46 |
| MS.gene054983 | MS.gene31519 | 0.833512 | 5.11E-56 | -1.69E-46 |
| MS.gene055356 | MS.gene31519 | 0.809301 | 2.02E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene31519 | 0.816133 | 6.47E-52 | -1.69E-46 |
| MS.gene055422 | MS.gene31519 | 0.823728 | 1.18E-53 | -1.69E-46 |
| MS.gene055428 | MS.gene31519 | 0.827265 | 1.72E-54 | -1.69E-46 |
| MS.gene055604 | MS.gene31519 | 0.818077 | 2.37E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene31519 | 0.805841 | 1.10E-49 | -1.69E-46 |
| MS.gene056069 | MS.gene31519 | -0.810032 | 1.41E-50 | -1.69E-46 |
| MS.gene056723 | MS.gene31519 | 0.802701 | 4.95E-49 | -1.69E-46 |
| MS.gene056875 | MS.gene31519 | 0.84294 | 1.90E-58 | -1.69E-46 |
| MS.gene056979 | MS.gene31519 | 0.838527 | 2.73E-57 | -1.69E-46 |
| MS.gene05702 | MS.gene31519 | 0.827595 | 1.43E-54 | -1.69E-46 |
| MS.gene057121 | MS.gene31519 | 0.830823 | 2.36E-55 | -1.69E-46 |
| MS.gene057245 | MS.gene31519 | 0.824461 | 7.97E-54 | -1.69E-46 |
| MS.gene057469 | MS.gene31519 | 0.834822 | 2.40E-56 | -1.69E-46 |
| MS.gene057750 | MS.gene31519 | 0.846914 | 1.61E-59 | -1.69E-46 |
| MS.gene057754 | MS.gene31519 | 0.816925 | 4.30E-52 | -1.69E-46 |
| MS.gene057967 | MS.gene31519 | 0.800106 | 1.68E-48 | -1.69E-46 |
| MS.gene058002 | MS.gene31519 | 0.846614 | 1.95E-59 | -1.69E-46 |
| MS.gene05811 | MS.gene31519 | 0.822801 | 1.95E-53 | -1.69E-46 |
| MS.gene058139 | MS.gene31519 | 0.836591 | 8.56E-57 | -1.69E-46 |
| MS.gene058142 | MS.gene31519 | 0.818813 | 1.61E-52 | -1.69E-46 |
| MS.gene058168 | MS.gene31519 | 0.814381 | 1.59E-51 | -1.69E-46 |
| MS.gene058710 | MS.gene31519 | 0.850156 | 2.04E-60 | -1.69E-46 |
| MS.gene058749 | MS.gene31519 | 0.839509 | 1.52E-57 | -1.69E-46 |
| MS.gene05886 | MS.gene31519 | 0.808181 | 3.51E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene31519 | 0.822242 | 2.63E-53 | -1.69E-46 |
| MS.gene059124 | MS.gene31519 | 0.841817 | 3.78E-58 | -1.69E-46 |
| MS.gene059128 | MS.gene31519 | 0.822699 | 2.06E-53 | -1.69E-46 |
| MS.gene059285 | MS.gene31519 | 0.844255 | 8.47E-59 | -1.69E-46 |
| MS.gene059421 | MS.gene31519 | 0.801796 | 7.60E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene31519 | 0.856106 | 4.03E-62 | -1.69E-46 |
| MS.gene059894 | MS.gene31519 | 0.806188 | 9.29E-50 | -1.69E-46 |
| MS.gene06037 | MS.gene31519 | 0.813289 | 2.76E-51 | -1.69E-46 |
| MS.gene060404 | MS.gene31519 | 0.811669 | 6.24E-51 | -1.69E-46 |
| MS.gene060476 | MS.gene31519 | 0.818114 | 2.32E-52 | -1.69E-46 |
| MS.gene060683 | MS.gene31519 | 0.829052 | 6.39E-55 | -1.69E-46 |
| MS.gene060685 | MS.gene31519 | 0.827356 | 1.64E-54 | -1.69E-46 |
| MS.gene060998 | MS.gene31519 | 0.814136 | 1.80E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene31519 | 0.865634 | 5.12E-65 | -1.69E-46 |
| MS.gene061085 | MS.gene31519 | 0.812913 | 3.34E-51 | -1.69E-46 |
| MS.gene061114 | MS.gene31519 | -0.800965 | 1.13E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31519.t1 | MTR_2g090055 | 94.702 | 302 | 16 | 0 | 1 | 302 | 1 | 302 | 0.0 | 602 |
| MS.gene31519.t1 | MTR_2g090060 | 48.173 | 301 | 152 | 3 | 3 | 301 | 18 | 316 | 9.04e-96 | 286 |
| MS.gene31519.t1 | MTR_2g090060 | 48.495 | 299 | 150 | 3 | 5 | 301 | 1 | 297 | 1.31e-95 | 285 |
| MS.gene31519.t1 | MTR_2g090070 | 39.667 | 300 | 145 | 4 | 3 | 301 | 4 | 268 | 3.43e-67 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31519.t1 | AT2G20830 | 58.528 | 299 | 120 | 1 | 1 | 299 | 6 | 300 | 1.07e-126 | 363 |
| MS.gene31519.t1 | AT2G20830 | 58.528 | 299 | 120 | 1 | 1 | 299 | 1 | 295 | 1.10e-126 | 363 |
| MS.gene31519.t1 | AT2G20830 | 58.528 | 299 | 120 | 1 | 1 | 299 | 1 | 295 | 1.10e-126 | 363 |
| MS.gene31519.t1 | AT2G20830 | 58.528 | 299 | 120 | 1 | 1 | 299 | 75 | 369 | 7.99e-126 | 364 |
| MS.gene31519.t1 | AT2G20830 | 58.725 | 298 | 119 | 1 | 1 | 298 | 45 | 338 | 8.86e-126 | 363 |
| MS.gene31519.t1 | AT2G20830 | 58.528 | 299 | 120 | 1 | 1 | 299 | 135 | 429 | 2.61e-124 | 362 |
Find 65 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCACCACCAACATTCTT+TGG | 0.181133 | 2.4:+11036591 | None:intergenic |
| TCTTCAAACTTGTTAATAAT+TGG | 0.184435 | 2.4:+11038535 | None:intergenic |
| TTGTTAATAATTGGTGCTAA+TGG | 0.292859 | 2.4:+11038544 | None:intergenic |
| ACTTGAGATGGACCACTATA+TGG | 0.313432 | 2.4:+11036816 | None:intergenic |
| TTACACTCTTGTCTCTGAAT+TGG | 0.333055 | 2.4:-11038491 | MS.gene31519:CDS |
| TCCACTGGTTGATGCTTCAT+TGG | 0.336732 | 2.4:-11038326 | MS.gene31519:CDS |
| GCAGTTCCTACTTTCTTATA+CGG | 0.356540 | 2.4:-11036960 | MS.gene31519:intron |
| TGAGGTAGCTTGTAATTTGT+TGG | 0.388839 | 2.4:-11036616 | MS.gene31519:CDS |
| ACAAAAGGTGTTGTGGTCAT+TGG | 0.405074 | 2.4:-11036786 | MS.gene31519:CDS |
| GATTCAGTCAGAAGAACATT+TGG | 0.406909 | 2.4:-11036909 | MS.gene31519:CDS |
| ACCTTTGCACGCCAACCCAC+TGG | 0.471312 | 2.4:+11036859 | None:intergenic |
| ATTGTAGTTATCAACCCATC+TGG | 0.474888 | 2.4:+11036758 | None:intergenic |
| TGGTGGACTTGCTTCGGTAC+AGG | 0.492627 | 2.4:-11036670 | MS.gene31519:CDS |
| TATTAACAAGTTTGAAGATG+TGG | 0.493411 | 2.4:-11038530 | MS.gene31519:CDS |
| AAGAGGTGGTGGACTTGCTT+CGG | 0.494417 | 2.4:-11036676 | MS.gene31519:CDS |
| AAAATGTTGAAGACAATCCT+AGG | 0.494490 | 2.4:-11038643 | MS.gene31519:CDS |
| TGGACCACTATATGGTTTCA+AGG | 0.496494 | 2.4:+11036824 | None:intergenic |
| CGGATTAGTGGAAGAGGTGG+TGG | 0.515119 | 2.4:-11036687 | MS.gene31519:CDS |
| TTTGTTGGAATCACTTGAGA+TGG | 0.518127 | 2.4:+11036804 | None:intergenic |
| TTGCCCTTGAAACCATATAG+TGG | 0.518779 | 2.4:-11036828 | MS.gene31519:CDS |
| TATATACTTTGCAGCAACCT+AGG | 0.518994 | 2.4:+11038626 | None:intergenic |
| TCTCAAGTGATTCCAACAAA+AGG | 0.522388 | 2.4:-11036801 | MS.gene31519:CDS |
| GAAGAACTTGCAAAGGAAGA+AGG | 0.524560 | 2.4:-11036552 | MS.gene31519:CDS |
| AGAATTGCAAAACGGATTAG+TGG | 0.527580 | 2.4:-11036699 | MS.gene31519:CDS |
| GATGTGGCTTATAATAGAGT+TGG | 0.534791 | 2.4:-11038514 | MS.gene31519:CDS |
| GACATGGGTTCTAGTTTGCA+AGG | 0.536782 | 2.4:-11038268 | MS.gene31519:intron |
| ACCAGTGGGTTGGCGTGCAA+AGG | 0.536794 | 2.4:-11036860 | MS.gene31519:CDS |
| GACAAATGCTGTGTTGGCTA+TGG | 0.537578 | 2.4:-11038434 | MS.gene31519:CDS |
| TGGTCATTGGAGCAACCAGA+TGG | 0.539838 | 2.4:-11036773 | MS.gene31519:CDS |
| TGATCAACAACTCCAAGTCT+AGG | 0.548195 | 2.4:+11038361 | None:intergenic |
| AAGCAGAAACAAGAGTGCAT+TGG | 0.556590 | 2.4:-11038596 | MS.gene31519:CDS |
| TGCTGTGTTGGCTATGGTGA+AGG | 0.556737 | 2.4:-11038428 | MS.gene31519:CDS |
| CAAACTAGAACCCATGTCAC+TGG | 0.559479 | 2.4:+11038273 | None:intergenic |
| CTTCATTGGATCAAGCAGCT+AGG | 0.561245 | 2.4:-11038312 | MS.gene31519:CDS |
| TGATTTGACAAATGCTGTGT+TGG | 0.563038 | 2.4:-11038440 | MS.gene31519:CDS |
| TTGGATCCAAAGAATGTTGG+TGG | 0.563093 | 2.4:-11036597 | MS.gene31519:CDS |
| ACTTGCTTCGGTACAGGCCA+TGG | 0.565946 | 2.4:-11036664 | MS.gene31519:CDS |
| AGTGGAACTCATCCTAGACT+TGG | 0.569058 | 2.4:-11038373 | MS.gene31519:CDS |
| TACGGAGCAGCACATGAAGA+GGG | 0.579593 | 2.4:-11036942 | MS.gene31519:CDS |
| AGAAGGTATTTCTGTCGAGA+AGG | 0.581638 | 2.4:-11036535 | MS.gene31519:CDS |
| GCAAAACGGATTAGTGGAAG+AGG | 0.586862 | 2.4:-11036693 | MS.gene31519:CDS |
| AAGGTGTTTAGCCAGTGACA+TGG | 0.587248 | 2.4:-11038284 | MS.gene31519:CDS |
| GGACCACTATATGGTTTCAA+GGG | 0.591212 | 2.4:+11036825 | None:intergenic |
| ATCAAGCAGCTAGGACTGCA+AGG | 0.592212 | 2.4:-11038303 | MS.gene31519:CDS |
| GCTGCTCCGTATAAGAAAGT+AGG | 0.592297 | 2.4:+11036954 | None:intergenic |
| AGAAGTTGAAGAACTTGCAA+AGG | 0.592967 | 2.4:-11036559 | MS.gene31519:CDS |
| GAAGGTATTTCTGTCGAGAA+GGG | 0.602825 | 2.4:-11036534 | MS.gene31519:CDS |
| AGGTGTTTAGCCAGTGACAT+GGG | 0.603533 | 2.4:-11038283 | MS.gene31519:CDS |
| GATTCCAACAAAAGGTGTTG+TGG | 0.603855 | 2.4:-11036793 | MS.gene31519:CDS |
| TTCACCATGTGTGAGTGCCA+TGG | 0.609048 | 2.4:+11036647 | None:intergenic |
| TCTAGCGAAAACCAGTGGGT+TGG | 0.616982 | 2.4:-11036870 | MS.gene31519:CDS |
| ATACGGAGCAGCACATGAAG+AGG | 0.618540 | 2.4:-11036943 | MS.gene31519:CDS |
| TTGTTGGATCCAAAGAATGT+TGG | 0.622656 | 2.4:-11036600 | MS.gene31519:CDS |
| CAGGCCATGGCACTCACACA+TGG | 0.624239 | 2.4:-11036651 | MS.gene31519:CDS |
| TCGTACGCAGAATTGCAAAA+CGG | 0.627456 | 2.4:-11036707 | MS.gene31519:CDS |
| CAAATTCTAGCGAAAACCAG+TGG | 0.628181 | 2.4:-11036875 | MS.gene31519:CDS |
| ATGGCACTCACACATGGTGA+AGG | 0.645524 | 2.4:-11036645 | MS.gene31519:CDS |
| GGTCATTGGAGCAACCAGAT+GGG | 0.649161 | 2.4:-11036772 | MS.gene31519:CDS |
| TAATATCAGAAGATAACAGA+GGG | 0.655752 | 2.4:+11036733 | None:intergenic |
| AAACGGATTAGTGGAAGAGG+TGG | 0.656003 | 2.4:-11036690 | MS.gene31519:CDS |
| ACATGGTGAAGGTATCATTG+AGG | 0.663540 | 2.4:-11036634 | MS.gene31519:CDS |
| AAATTCTAGCGAAAACCAGT+GGG | 0.667223 | 2.4:-11036874 | MS.gene31519:CDS |
| TCCAATGAAGCATCAACCAG+TGG | 0.673782 | 2.4:+11038325 | None:intergenic |
| ACGGAGCAGCACATGAAGAG+GGG | 0.674394 | 2.4:-11036941 | MS.gene31519:CDS |
| CTAATATCAGAAGATAACAG+AGG | 0.723327 | 2.4:+11036732 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACACAAACTTTAATATT+TGG | + | chr2.4:11037454-11037473 | None:intergenic | 15.0% |
| !! | TATATTTACATGTTAGTAAA+TGG | - | chr2.4:11037205-11037224 | MS.gene31519:intron | 15.0% |
| !! | TAGTAACAATTCTTCTTAAA+TGG | - | chr2.4:11037802-11037821 | MS.gene31519:intron | 20.0% |
| !!! | ATTTGATAATGTTGATTTTG+AGG | - | chr2.4:11036703-11036722 | MS.gene31519:CDS | 20.0% |
| !!! | GTTTTTCTAATATATGCTAA+AGG | - | chr2.4:11037234-11037253 | MS.gene31519:intron | 20.0% |
| !!! | TCTTCAAACTTGTTAATAAT+TGG | + | chr2.4:11036572-11036591 | None:intergenic | 20.0% |
| ! | AGTATTACTTCTTATGTGTT+TGG | - | chr2.4:11036957-11036976 | MS.gene31519:CDS | 25.0% |
| ! | GTTAATTAACAATTACTGAG+AGG | - | chr2.4:11037598-11037617 | MS.gene31519:intron | 25.0% |
| ! | TAATATCAGAAGATAACAGA+GGG | + | chr2.4:11038374-11038393 | None:intergenic | 25.0% |
| ! | TACTTCTCATAGATTAAAGA+TGG | + | chr2.4:11037516-11037535 | None:intergenic | 25.0% |
| ! | TATTAACAAGTTTGAAGATG+TGG | - | chr2.4:11036574-11036593 | MS.gene31519:CDS | 25.0% |
| ! | TCTTTAACATTTAGCACAAA+AGG | - | chr2.4:11037426-11037445 | MS.gene31519:intron | 25.0% |
| ! | TGTTAATGTGAATTGTTCAT+TGG | + | chr2.4:11037883-11037902 | None:intergenic | 25.0% |
| ! | TTATTAACATAGATGCAAGT+TGG | - | chr2.4:11037155-11037174 | MS.gene31519:intron | 25.0% |
| !! | AAAATTTTAGGCCTTTTGTT+GGG | - | chr2.4:11037840-11037859 | MS.gene31519:intron | 25.0% |
| !! | TGATGATGAACATATACTAA+AGG | + | chr2.4:11038087-11038106 | None:intergenic | 25.0% |
| !! | TGTGAACTCTTCAAAATTTT+AGG | - | chr2.4:11037828-11037847 | MS.gene31519:intron | 25.0% |
| !! | TTGATGACTTTATTCATCTT+AGG | + | chr2.4:11037914-11037933 | None:intergenic | 25.0% |
| !!! | AAAGGAGAATGTTATTTCTT+GGG | - | chr2.4:11037252-11037271 | MS.gene31519:intron | 25.0% |
| !!! | AATGTATTGATTCTGCAAAA+TGG | - | chr2.4:11037006-11037025 | MS.gene31519:intron | 25.0% |
| !!! | ATCACTTTTATTATTCAACC+AGG | + | chr2.4:11038053-11038072 | None:intergenic | 25.0% |
| !!! | ATTGGTTGATTTTTCATTTC+AGG | - | chr2.4:11037978-11037997 | MS.gene31519:intron | 25.0% |
| !!! | GTGTTTCTTTTATTTGAAGA+GGG | + | chr2.4:11037665-11037684 | None:intergenic | 25.0% |
| !!! | TAAAGGAGAATGTTATTTCT+TGG | - | chr2.4:11037251-11037270 | MS.gene31519:intron | 25.0% |
| !!! | TCACTTTTATTATTCAACCA+GGG | + | chr2.4:11038052-11038071 | None:intergenic | 25.0% |
| !!! | TTGTTAATAATTGGTGCTAA+TGG | + | chr2.4:11036563-11036582 | None:intergenic | 25.0% |
| AGGCTAAAAATCAATTGTAG+AGG | - | chr2.4:11037063-11037082 | MS.gene31519:intron | 30.0% | |
| ATACATGACACTGTTTGATA+TGG | - | chr2.4:11037697-11037716 | MS.gene31519:intron | 30.0% | |
| ATATTCTAATGTGACGTTGA+AGG | + | chr2.4:11038018-11038037 | None:intergenic | 30.0% | |
| CTAATATCAGAAGATAACAG+AGG | + | chr2.4:11038375-11038394 | None:intergenic | 30.0% | |
| TATCAAACAGTGTCATGTAT+TGG | + | chr2.4:11037697-11037716 | None:intergenic | 30.0% | |
| ! | AGTTGCATAGCATGATTTTA+AGG | - | chr2.4:11036864-11036883 | MS.gene31519:CDS | 30.0% |
| ! | CAAAATTTTAGGCCTTTTGT+TGG | - | chr2.4:11037839-11037858 | MS.gene31519:intron | 30.0% |
| ! | GTTGCATAGCATGATTTTAA+GGG | - | chr2.4:11036865-11036884 | MS.gene31519:CDS | 30.0% |
| !! | AAGGAGAATGTTATTTCTTG+GGG | - | chr2.4:11037253-11037272 | MS.gene31519:intron | 30.0% |
| !! | CGTGTTTCTTTTATTTGAAG+AGG | + | chr2.4:11037666-11037685 | None:intergenic | 30.0% |
| !! | GCAAGTTGGTAACATATAAT+TGG | - | chr2.4:11037169-11037188 | MS.gene31519:intron | 30.0% |
| !! | TCATATTTGTTTTCATCCAC+TGG | - | chr2.4:11036763-11036782 | MS.gene31519:CDS | 30.0% |
| AAATTCTAGCGAAAACCAGT+GGG | - | chr2.4:11038230-11038249 | MS.gene31519:intron | 35.0% | |
| AACTCCATAGCATCTTAAAG+TGG | + | chr2.4:11037626-11037645 | None:intergenic | 35.0% | |
| AAGCTTATGTAGACGTTGAA+AGG | - | chr2.4:11037285-11037304 | MS.gene31519:intron | 35.0% | |
| ACAACCAAAAAGACTATGCA+TGG | + | chr2.4:11037384-11037403 | None:intergenic | 35.0% | |
| AGAAGTTGAAGAACTTGCAA+AGG | - | chr2.4:11038545-11038564 | MS.gene31519:CDS | 35.0% | |
| ATGACCTTGTCAAATTTCAC+TGG | + | chr2.4:11037361-11037380 | None:intergenic | 35.0% | |
| ATTGTAGTTATCAACCCATC+TGG | + | chr2.4:11038349-11038368 | None:intergenic | 35.0% | |
| CATACCAGTGAAATTTGACA+AGG | - | chr2.4:11037354-11037373 | MS.gene31519:intron | 35.0% | |
| CCAATACAAGATCAAAAGCT+CGG | + | chr2.4:11037963-11037982 | None:intergenic | 35.0% | |
| GATGTGGCTTATAATAGAGT+TGG | - | chr2.4:11036590-11036609 | MS.gene31519:CDS | 35.0% | |
| GATTCAGTCAGAAGAACATT+TGG | - | chr2.4:11038195-11038214 | MS.gene31519:intron | 35.0% | |
| GCAGTTCCTACTTTCTTATA+CGG | - | chr2.4:11038144-11038163 | MS.gene31519:intron | 35.0% | |
| TATAAGAAAGTAGGAACTGC+AGG | + | chr2.4:11038144-11038163 | None:intergenic | 35.0% | |
| TATATACTTTGCAGCAACCT+AGG | + | chr2.4:11036481-11036500 | None:intergenic | 35.0% | |
| TCAATCACGACTAATAGCAA+AGG | - | chr2.4:11037930-11037949 | MS.gene31519:intron | 35.0% | |
| TCTCAAGTGATTCCAACAAA+AGG | - | chr2.4:11038303-11038322 | MS.gene31519:CDS | 35.0% | |
| TGAGACGAACAATAAATTCG+AGG | - | chr2.4:11037043-11037062 | MS.gene31519:intron | 35.0% | |
| TGATTTGACAAATGCTGTGT+TGG | - | chr2.4:11036664-11036683 | MS.gene31519:CDS | 35.0% | |
| TTACACTCTTGTCTCTGAAT+TGG | - | chr2.4:11036613-11036632 | MS.gene31519:CDS | 35.0% | |
| TTGTTGGATCCAAAGAATGT+TGG | - | chr2.4:11038504-11038523 | MS.gene31519:CDS | 35.0% | |
| TTTGTTGGAATCACTTGAGA+TGG | + | chr2.4:11038303-11038322 | None:intergenic | 35.0% | |
| ! | ACGTTGAAGGATAGTGATTT+TGG | + | chr2.4:11038005-11038024 | None:intergenic | 35.0% |
| ! | ATACTACACAGACTTTTCAC+AGG | - | chr2.4:11038593-11038612 | MS.gene31519:CDS | 35.0% |
| ! | TCATCCATGCATAGTCTTTT+TGG | - | chr2.4:11037377-11037396 | MS.gene31519:intron | 35.0% |
| ! | TGAGGTAGCTTGTAATTTGT+TGG | - | chr2.4:11038488-11038507 | MS.gene31519:CDS | 35.0% |
| !! | AGAATGTTATTTCTTGGGGA+GGG | - | chr2.4:11037257-11037276 | MS.gene31519:intron | 35.0% |
| !! | AGAATTGCAAAACGGATTAG+TGG | - | chr2.4:11038405-11038424 | MS.gene31519:CDS | 35.0% |
| !!! | ATGCATAGTCTTTTTGGTTG+TGG | - | chr2.4:11037383-11037402 | MS.gene31519:intron | 35.0% |
| !!! | GTTGATTTTGAGGTTCATAG+TGG | - | chr2.4:11036713-11036732 | MS.gene31519:CDS | 35.0% |
| ACTTGAGATGGACCACTATA+TGG | + | chr2.4:11038291-11038310 | None:intergenic | 40.0% | |
| ATCAGTTGCAACCCAACAAA+AGG | + | chr2.4:11037854-11037873 | None:intergenic | 40.0% | |
| ATGACACTGTTTGATATGGC+TGG | - | chr2.4:11037701-11037720 | MS.gene31519:intron | 40.0% | |
| CAAATTCTAGCGAAAACCAG+TGG | - | chr2.4:11038229-11038248 | MS.gene31519:intron | 40.0% | |
| GAAGAACTTGCAAAGGAAGA+AGG | - | chr2.4:11038552-11038571 | MS.gene31519:CDS | 40.0% | |
| GAATATGTTCTGTTGTTCCC+TGG | - | chr2.4:11038032-11038051 | MS.gene31519:intron | 40.0% | |
| GGACCACTATATGGTTTCAA+GGG | + | chr2.4:11038282-11038301 | None:intergenic | 40.0% | |
| TATGTAGACGTTGAAAGGAC+CGG | - | chr2.4:11037290-11037309 | MS.gene31519:intron | 40.0% | |
| TCGTACGCAGAATTGCAAAA+CGG | - | chr2.4:11038397-11038416 | MS.gene31519:CDS | 40.0% | |
| TGATCAACAACTCCAAGTCT+AGG | + | chr2.4:11036746-11036765 | None:intergenic | 40.0% | |
| TGGACCACTATATGGTTTCA+AGG | + | chr2.4:11038283-11038302 | None:intergenic | 40.0% | |
| TTAGTAGTGTGCATGCTTCT+GGG | - | chr2.4:11037488-11037507 | MS.gene31519:intron | 40.0% | |
| TTCTCACCACCAACATTCTT+TGG | + | chr2.4:11038516-11038535 | None:intergenic | 40.0% | |
| TTGCCCTTGAAACCATATAG+TGG | - | chr2.4:11038276-11038295 | MS.gene31519:CDS | 40.0% | |
| TTGGATCCAAAGAATGTTGG+TGG | - | chr2.4:11038507-11038526 | MS.gene31519:CDS | 40.0% | |
| TTTAGTAGTGTGCATGCTTC+TGG | - | chr2.4:11037487-11037506 | MS.gene31519:intron | 40.0% | |
| ! | AAGCAGAAACAAGAGTGCAT+TGG | - | chr2.4:11036508-11036527 | MS.gene31519:CDS | 40.0% |
| ! | ATGACCACAACACCTTTTGT+TGG | + | chr2.4:11038318-11038337 | None:intergenic | 40.0% |
| ! | CCGAGCTTTTGATCTTGTAT+TGG | - | chr2.4:11037960-11037979 | MS.gene31519:intron | 40.0% |
| !! | ACAAAAGGTGTTGTGGTCAT+TGG | - | chr2.4:11038318-11038337 | MS.gene31519:CDS | 40.0% |
| !! | ACATGGTGAAGGTATCATTG+AGG | - | chr2.4:11038470-11038489 | MS.gene31519:CDS | 40.0% |
| !! | AGAAGGTATTTCTGTCGAGA+AGG | - | chr2.4:11038569-11038588 | MS.gene31519:CDS | 40.0% |
| !! | GAAGGTATTTCTGTCGAGAA+GGG | - | chr2.4:11038570-11038589 | MS.gene31519:CDS | 40.0% |
| !! | GAATGTTATTTCTTGGGGAG+GGG | - | chr2.4:11037258-11037277 | MS.gene31519:intron | 40.0% |
| !! | GAGAATGTTATTTCTTGGGG+AGG | - | chr2.4:11037256-11037275 | MS.gene31519:intron | 40.0% |
| !! | GATTCCAACAAAAGGTGTTG+TGG | - | chr2.4:11038311-11038330 | MS.gene31519:CDS | 40.0% |
| !! | GGTTCCACTTTAAGATGCTA+TGG | - | chr2.4:11037619-11037638 | MS.gene31519:intron | 40.0% |
| !!! | CACTGGTTTTCGCTAGAATT+TGG | + | chr2.4:11038231-11038250 | None:intergenic | 40.0% |
| AGGTGTTTAGCCAGTGACAT+GGG | - | chr2.4:11036821-11036840 | MS.gene31519:CDS | 45.0% | |
| AGTGGAACTCATCCTAGACT+TGG | - | chr2.4:11036731-11036750 | MS.gene31519:CDS | 45.0% | |
| CAAACTAGAACCCATGTCAC+TGG | + | chr2.4:11036834-11036853 | None:intergenic | 45.0% | |
| CTTCATTGGATCAAGCAGCT+AGG | - | chr2.4:11036792-11036811 | MS.gene31519:CDS | 45.0% | |
| GCTGCTCCGTATAAGAAAGT+AGG | + | chr2.4:11038153-11038172 | None:intergenic | 45.0% | |
| ! | AAGGTGTTTAGCCAGTGACA+TGG | - | chr2.4:11036820-11036839 | MS.gene31519:CDS | 45.0% |
| ! | TCCAATGAAGCATCAACCAG+TGG | + | chr2.4:11036782-11036801 | None:intergenic | 45.0% |
| ! | TCCACTGGTTGATGCTTCAT+TGG | - | chr2.4:11036778-11036797 | MS.gene31519:CDS | 45.0% |
| !! | AAACGGATTAGTGGAAGAGG+TGG | - | chr2.4:11038414-11038433 | MS.gene31519:CDS | 45.0% |
| !! | GACAAATGCTGTGTTGGCTA+TGG | - | chr2.4:11036670-11036689 | MS.gene31519:CDS | 45.0% |
| !! | GACATGGGTTCTAGTTTGCA+AGG | - | chr2.4:11036836-11036855 | MS.gene31519:CDS | 45.0% |
| !! | GCAAAACGGATTAGTGGAAG+AGG | - | chr2.4:11038411-11038430 | MS.gene31519:CDS | 45.0% |
| ATACGGAGCAGCACATGAAG+AGG | - | chr2.4:11038161-11038180 | MS.gene31519:intron | 50.0% | |
| ATCAAGCAGCTAGGACTGCA+AGG | - | chr2.4:11036801-11036820 | MS.gene31519:CDS | 50.0% | |
| ATGGCACTCACACATGGTGA+AGG | - | chr2.4:11038459-11038478 | MS.gene31519:CDS | 50.0% | |
| GCATCGAGATGTCTTTCCAC+CGG | + | chr2.4:11037312-11037331 | None:intergenic | 50.0% | |
| GGTCATTGGAGCAACCAGAT+GGG | - | chr2.4:11038332-11038351 | MS.gene31519:CDS | 50.0% | |
| TACGGAGCAGCACATGAAGA+GGG | - | chr2.4:11038162-11038181 | MS.gene31519:intron | 50.0% | |
| TCTAGCGAAAACCAGTGGGT+TGG | - | chr2.4:11038234-11038253 | MS.gene31519:intron | 50.0% | |
| TGGTCATTGGAGCAACCAGA+TGG | - | chr2.4:11038331-11038350 | MS.gene31519:CDS | 50.0% | |
| TTCACCATGTGTGAGTGCCA+TGG | + | chr2.4:11038460-11038479 | None:intergenic | 50.0% | |
| !! | AAGAGGTGGTGGACTTGCTT+CGG | - | chr2.4:11038428-11038447 | MS.gene31519:CDS | 50.0% |
| !! | TGCTGTGTTGGCTATGGTGA+AGG | - | chr2.4:11036676-11036695 | MS.gene31519:CDS | 50.0% |
| ACGGAGCAGCACATGAAGAG+GGG | - | chr2.4:11038163-11038182 | MS.gene31519:intron | 55.0% | |
| ACTTGCTTCGGTACAGGCCA+TGG | - | chr2.4:11038440-11038459 | MS.gene31519:CDS | 55.0% | |
| GTAGACGTTGAAAGGACCGG+TGG | - | chr2.4:11037293-11037312 | MS.gene31519:intron | 55.0% | |
| !! | CGGATTAGTGGAAGAGGTGG+TGG | - | chr2.4:11038417-11038436 | MS.gene31519:CDS | 55.0% |
| !! | TGGTGGACTTGCTTCGGTAC+AGG | - | chr2.4:11038434-11038453 | MS.gene31519:CDS | 55.0% |
| ACCTTTGCACGCCAACCCAC+TGG | + | chr2.4:11038248-11038267 | None:intergenic | 60.0% | |
| CAGGCCATGGCACTCACACA+TGG | - | chr2.4:11038453-11038472 | MS.gene31519:CDS | 60.0% | |
| !! | ACCAGTGGGTTGGCGTGCAA+AGG | - | chr2.4:11038244-11038263 | MS.gene31519:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 11036464 | 11038662 | 11036464 | ID=MS.gene31519 |
| chr2.4 | mRNA | 11036464 | 11038662 | 11036464 | ID=MS.gene31519.t1;Parent=MS.gene31519 |
| chr2.4 | exon | 11038269 | 11038662 | 11038269 | ID=MS.gene31519.t1.exon1;Parent=MS.gene31519.t1 |
| chr2.4 | CDS | 11038269 | 11038662 | 11038269 | ID=cds.MS.gene31519.t1;Parent=MS.gene31519.t1 |
| chr2.4 | exon | 11036464 | 11036978 | 11036464 | ID=MS.gene31519.t1.exon2;Parent=MS.gene31519.t1 |
| chr2.4 | CDS | 11036464 | 11036978 | 11036464 | ID=cds.MS.gene31519.t1;Parent=MS.gene31519.t1 |
| Gene Sequence |
| Protein sequence |
