AlfalfaGEDB | MS.gene54919

M. sativa cultivar XinJiangDaYe / MS.gene54919

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0097159 GO:1901363
PFAM: PF00076.25 PF00098.26

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54919.t1	XP_024638154.1	91	199	14	2	11	207	15	211	3.70E-62	248.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54919.t1	Q9LIN3	68.8	138	39	3	11	147	15	149	2.9e-39	163.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54919.t1	A0A396IAW5	91.0	199	14	2	11	207	15	211	2.7e-62	248.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene54919	0.818292	2.11E-52	-1.69E-46
MS.gene049255	MS.gene54919	0.903464	3.38E-79	-1.69E-46
MS.gene049340	MS.gene54919	0.814427	1.55E-51	-1.69E-46
MS.gene049341	MS.gene54919	0.883843	3.18E-71	-1.69E-46
MS.gene049382	MS.gene54919	0.808258	3.38E-50	-1.69E-46
MS.gene049821	MS.gene54919	0.813343	2.69E-51	-1.69E-46
MS.gene049887	MS.gene54919	0.810432	1.16E-50	-1.69E-46
MS.gene049979	MS.gene54919	0.809498	1.84E-50	-1.69E-46
MS.gene050020	MS.gene54919	0.826523	2.59E-54	-1.69E-46
MS.gene050277	MS.gene54919	0.866216	3.35E-65	-1.69E-46
MS.gene050384	MS.gene54919	0.822997	1.76E-53	-1.69E-46
MS.gene050386	MS.gene54919	0.824981	6.01E-54	-1.69E-46
MS.gene050437	MS.gene54919	0.834695	2.58E-56	-1.69E-46
MS.gene050689	MS.gene54919	0.893998	3.73E-75	-1.69E-46
MS.gene050752	MS.gene54919	0.810283	1.24E-50	-1.69E-46
MS.gene050807	MS.gene54919	0.844497	7.29E-59	-1.69E-46
MS.gene050815	MS.gene54919	0.840712	7.37E-58	-1.69E-46
MS.gene050838	MS.gene54919	0.845835	3.17E-59	-1.69E-46
MS.gene051233	MS.gene54919	0.800045	1.73E-48	-1.69E-46
MS.gene051241	MS.gene54919	0.818939	1.51E-52	-1.69E-46
MS.gene051243	MS.gene54919	0.868125	8.24E-66	-1.69E-46
MS.gene051245	MS.gene54919	0.818539	1.86E-52	-1.69E-46
MS.gene051328	MS.gene54919	0.911825	3.92E-83	-1.69E-46
MS.gene05134	MS.gene54919	0.861603	9.13E-64	-1.69E-46
MS.gene051577	MS.gene54919	0.819078	1.40E-52	-1.69E-46
MS.gene05157	MS.gene54919	0.804039	2.62E-49	-1.69E-46
MS.gene051746	MS.gene54919	0.808665	2.77E-50	-1.69E-46
MS.gene051748	MS.gene54919	0.806881	6.63E-50	-1.69E-46
MS.gene051757	MS.gene54919	0.807352	5.27E-50	-1.69E-46
MS.gene051789	MS.gene54919	0.823897	1.08E-53	-1.69E-46
MS.gene051850	MS.gene54919	0.811132	8.16E-51	-1.69E-46
MS.gene051903	MS.gene54919	0.812434	4.25E-51	-1.69E-46
MS.gene052133	MS.gene54919	0.836226	1.06E-56	-1.69E-46
MS.gene052286	MS.gene54919	0.815167	1.06E-51	-1.69E-46
MS.gene052397	MS.gene54919	0.817871	2.63E-52	-1.69E-46
MS.gene052516	MS.gene54919	0.827738	1.33E-54	-1.69E-46
MS.gene052665	MS.gene54919	0.807305	5.39E-50	-1.69E-46
MS.gene052879	MS.gene54919	0.8461	2.68E-59	-1.69E-46
MS.gene052880	MS.gene54919	0.836084	1.15E-56	-1.69E-46
MS.gene052947	MS.gene54919	0.85073	1.41E-60	-1.69E-46
MS.gene053008	MS.gene54919	0.831346	1.76E-55	-1.69E-46
MS.gene053058	MS.gene54919	0.804315	2.29E-49	-1.69E-46
MS.gene053563	MS.gene54919	0.80324	3.83E-49	-1.69E-46
MS.gene053581	MS.gene54919	0.831843	1.33E-55	-1.69E-46
MS.gene053590	MS.gene54919	0.804457	2.14E-49	-1.69E-46
MS.gene05364	MS.gene54919	0.818188	2.23E-52	-1.69E-46
MS.gene054403	MS.gene54919	0.803284	3.75E-49	-1.69E-46
MS.gene05462	MS.gene54919	0.811404	7.12E-51	-1.69E-46
MS.gene055162	MS.gene54919	0.881524	2.23E-70	-1.69E-46
MS.gene05517	MS.gene54919	0.807228	5.60E-50	-1.69E-46
MS.gene055466	MS.gene54919	0.824927	6.19E-54	-1.69E-46
MS.gene055468	MS.gene54919	0.827662	1.38E-54	-1.69E-46
MS.gene055512	MS.gene54919	0.832936	7.11E-56	-1.69E-46
MS.gene055580	MS.gene54919	-0.808013	3.82E-50	-1.69E-46
MS.gene055623	MS.gene54919	0.809915	1.49E-50	-1.69E-46
MS.gene055891	MS.gene54919	0.805906	1.06E-49	-1.69E-46
MS.gene055912	MS.gene54919	0.813453	2.54E-51	-1.69E-46
MS.gene055979	MS.gene54919	0.857601	1.46E-62	-1.69E-46
MS.gene056043	MS.gene54919	-0.815672	8.20E-52	-1.69E-46
MS.gene056215	MS.gene54919	0.800077	1.71E-48	-1.69E-46
MS.gene056432	MS.gene54919	0.832512	9.06E-56	-1.69E-46
MS.gene056580	MS.gene54919	0.824447	8.03E-54	-1.69E-46
MS.gene056631	MS.gene54919	0.828328	9.56E-55	-1.69E-46
MS.gene056760	MS.gene54919	0.841804	3.80E-58	-1.69E-46
MS.gene057057	MS.gene54919	0.87922	1.49E-69	-1.69E-46
MS.gene057140	MS.gene54919	0.850863	1.29E-60	-1.69E-46
MS.gene057234	MS.gene54919	0.855814	4.90E-62	-1.69E-46
MS.gene057693	MS.gene54919	0.810961	8.88E-51	-1.69E-46
MS.gene057705	MS.gene54919	0.874293	7.56E-68	-1.69E-46
MS.gene058054	MS.gene54919	0.817748	2.81E-52	-1.69E-46
MS.gene058055	MS.gene54919	0.857006	2.19E-62	-1.69E-46
MS.gene058084	MS.gene54919	0.806613	7.56E-50	-1.69E-46
MS.gene058238	MS.gene54919	0.802652	5.07E-49	-1.69E-46
MS.gene058646	MS.gene54919	0.801541	8.58E-49	-1.69E-46
MS.gene058906	MS.gene54919	0.887074	1.96E-72	-1.69E-46
MS.gene059151	MS.gene54919	0.802336	5.89E-49	-1.69E-46
MS.gene05978	MS.gene54919	0.857809	1.27E-62	-1.69E-46
MS.gene059842	MS.gene54919	0.821508	3.89E-53	-1.69E-46
MS.gene059898	MS.gene54919	0.836011	1.20E-56	-1.69E-46
MS.gene059937	MS.gene54919	0.816915	4.32E-52	-1.69E-46
MS.gene06001	MS.gene54919	0.83581	1.35E-56	-1.69E-46
MS.gene060429	MS.gene54919	0.830688	2.55E-55	-1.69E-46
MS.gene060463	MS.gene54919	0.812886	3.38E-51	-1.69E-46
MS.gene060465	MS.gene54919	0.81045	1.15E-50	-1.69E-46
MS.gene060587	MS.gene54919	0.826255	3.00E-54	-1.69E-46
MS.gene060803	MS.gene54919	0.810995	8.74E-51	-1.69E-46
MS.gene060917	MS.gene54919	0.828886	7.01E-55	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54919.t1	MTR_4g070140	55.556	72	32	0	10	81	15	86	4.32e-22	89.4
MS.gene54919.t1	MTR_4g070080	52.113	71	34	0	10	80	13	83	5.25e-21	85.9
MS.gene54919.t1	MTR_4g070190	48.611	72	37	0	10	81	15	86	4.85e-19	80.5
MS.gene54919.t1	MTR_7g099940	48.571	70	36	0	14	83	46	115	1.91e-14	67.8
MS.gene54919.t1	MTR_3g025880	38.158	76	47	0	5	80	46	121	3.64e-14	70.5
MS.gene54919.t1	MTR_7g105260	40.278	72	43	0	10	81	39	110	5.52e-14	66.6
MS.gene54919.t1	MTR_3g075500	43.373	83	45	1	5	85	208	290	7.26e-14	68.9
MS.gene54919.t1	MTR_3g080130	44.286	70	39	0	10	79	43	112	2.87e-13	64.7
MS.gene54919.t1	MTR_4g109540	39.241	79	47	1	3	80	49	127	2.91e-13	67.0
MS.gene54919.t1	MTR_1g092860	42.254	71	41	0	10	80	199	269	4.27e-13	66.6
MS.gene54919.t1	MTR_2g096560	39.474	76	46	0	10	85	14	89	1.14e-12	61.6
MS.gene54919.t1	MTR_4g109540	38.571	70	43	0	11	80	50	119	1.14e-12	65.5
MS.gene54919.t1	MTR_7g107580	44.444	63	35	0	16	78	361	423	4.01e-12	64.7
MS.gene54919.t1	MTR_7g107580	44.444	63	35	0	16	78	362	424	4.17e-12	64.7
MS.gene54919.t1	MTR_3g084040	40.000	75	44	1	10	84	43	116	8.44e-12	60.8
MS.gene54919.t1	MTR_6g477870	38.889	72	44	0	10	81	102	173	8.76e-12	61.6
MS.gene54919.t1	MTR_1g064230	44.286	70	39	0	10	79	203	272	1.86e-11	62.0
MS.gene54919.t1	MTR_1g045510	38.028	71	44	0	10	80	211	281	3.38e-11	61.6
MS.gene54919.t1	MTR_4g035310	45.000	60	32	1	10	68	23	82	4.11e-11	61.2
MS.gene54919.t1	MTR_4g035310	37.349	83	46	2	5	81	18	100	4.59e-11	60.8
MS.gene54919.t1	MTR_7g106440	39.706	68	41	0	12	79	221	288	8.35e-11	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54919.t1	AT3G26420	51.639	244	65	7	5	204	9	243	6.80e-60	188
MS.gene54919.t1	AT1G60650	36.719	128	72	3	5	132	14	132	2.16e-24	97.8
MS.gene54919.t1	AT1G60650	36.719	128	72	3	5	132	14	132	2.16e-24	97.8
MS.gene54919.t1	AT4G39260	55.556	72	32	0	10	81	13	84	1.13e-22	88.2
MS.gene54919.t1	AT5G04280	36.585	164	86	4	5	155	9	167	4.14e-22	92.0
MS.gene54919.t1	AT4G39260	56.338	71	31	0	10	80	13	83	1.02e-21	86.7
MS.gene54919.t1	AT4G39260	56.338	71	31	0	10	80	13	83	3.01e-21	86.7
MS.gene54919.t1	AT2G21660	54.930	71	32	0	10	80	15	85	3.18e-21	86.3
MS.gene54919.t1	AT2G21660	54.930	71	32	0	10	80	15	85	4.77e-21	86.3
MS.gene54919.t1	AT4G13850	42.529	87	50	0	1	87	33	119	9.15e-16	71.6
MS.gene54919.t1	AT5G04280	40.299	134	62	4	35	155	1	129	9.82e-16	73.9
MS.gene54919.t1	AT5G04280	40.299	134	62	4	35	155	1	129	9.82e-16	73.9
MS.gene54919.t1	AT5G04280	40.299	134	62	4	35	155	1	129	9.82e-16	73.9
MS.gene54919.t1	AT5G04280	40.299	134	62	4	35	155	1	129	9.82e-16	73.9
MS.gene54919.t1	AT4G13850	42.529	87	50	0	1	87	33	119	1.12e-15	71.6
MS.gene54919.t1	AT4G13850	42.529	87	50	0	1	87	33	119	1.25e-15	71.6
MS.gene54919.t1	AT4G13850	45.000	80	44	0	1	80	33	112	1.49e-15	70.5
MS.gene54919.t1	AT2G37220	46.479	71	38	0	10	80	211	281	1.18e-14	71.2
MS.gene54919.t1	AT1G60650	36.538	104	57	3	29	132	1	95	1.33e-14	70.9
MS.gene54919.t1	AT4G39260	53.571	56	26	0	10	65	13	68	1.45e-14	67.4
MS.gene54919.t1	AT3G23830	41.026	78	46	0	10	87	42	119	2.13e-14	67.8
MS.gene54919.t1	AT3G23830	41.026	78	46	0	10	87	42	119	2.13e-14	67.8
MS.gene54919.t1	AT3G53460	45.070	71	39	0	10	80	264	334	4.28e-14	70.1
MS.gene54919.t1	AT3G53460	45.070	71	39	0	10	80	264	334	4.28e-14	70.1
MS.gene54919.t1	AT3G53460	45.070	71	39	0	10	80	264	334	4.28e-14	70.1
MS.gene54919.t1	AT3G53460	45.070	71	39	0	10	80	285	355	5.38e-14	70.1
MS.gene54919.t1	AT1G60650	38.776	98	51	3	35	132	1	89	8.64e-14	68.6
MS.gene54919.t1	AT1G03457	46.774	62	33	0	16	77	238	299	1.48e-13	68.6
MS.gene54919.t1	AT5G06210	40.541	74	44	0	10	83	41	114	1.66e-13	65.5
MS.gene54919.t1	AT5G61030	41.250	80	46	1	1	79	37	116	2.11e-13	67.8
MS.gene54919.t1	AT5G61030	41.250	80	46	1	1	79	37	116	2.11e-13	67.8
MS.gene54919.t1	AT5G47320	36.559	93	57	1	14	104	42	134	2.78e-13	66.2
MS.gene54919.t1	AT1G03457	46.774	62	33	0	16	77	352	413	4.16e-13	67.8
MS.gene54919.t1	AT1G03457	46.774	62	33	0	16	77	343	404	4.83e-13	67.4
MS.gene54919.t1	AT1G18630	49.254	67	34	0	13	79	46	112	7.24e-13	63.9
MS.gene54919.t1	AT1G73530	34.653	101	58	2	10	107	84	179	1.09e-12	64.3
MS.gene54919.t1	AT2G37510	50.000	64	32	0	14	77	45	108	7.43e-12	61.2
MS.gene54919.t1	AT5G59865	39.726	73	44	0	10	82	33	105	1.06e-11	60.1
MS.gene54919.t1	AT4G24770	42.254	71	41	0	10	80	251	321	1.07e-11	63.2
MS.gene54919.t1	AT4G24770	42.254	71	41	0	10	80	251	321	1.07e-11	63.2
MS.gene54919.t1	AT3G20930	38.158	76	47	0	5	80	284	359	1.53e-11	62.8
MS.gene54919.t1	AT2G46780	46.032	63	33	1	10	72	29	90	2.33e-11	62.4
MS.gene54919.t1	AT2G46780	46.032	63	33	1	10	72	29	90	2.33e-11	62.4
MS.gene54919.t1	AT4G03110	46.774	62	33	0	16	77	362	423	2.77e-11	62.4

Find 60 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCTGGACGCTCTCGTGGTTT+TGG	0.216628	4.4:-66453165	MS.gene54919:CDS
GGTGGTAGTCGTGGAGATTC+TGG	0.273094	4.4:-66452757	MS.gene54919:CDS
AGGGATACATTTGAAAAGTT+TGG	0.280841	4.4:-66453225	MS.gene54919:CDS
GTTCTTCTGGCGGTCGCAGC+AGG	0.318323	4.4:-66452783	MS.gene54919:CDS
AGTGGTGGTGGTGGTTACTA+TGG	0.329041	4.4:-66452826	MS.gene54919:CDS
AGAAATGGAGATCGTTCTTC+TGG	0.378108	4.4:-66452796	MS.gene54919:CDS
GAACGATCTCCATTTCTATC+TGG	0.388438	4.4:+66452802	None:intergenic
AGGGAGTGCCCTAGTGGTGA+AGG	0.394081	4.4:-66452901	MS.gene54919:CDS
CCATATGAACGACGTGGATC+TGG	0.395444	4.4:-66452697	MS.gene54919:CDS
CAACATCCGATAGAAAGTTA+AGG	0.426777	4.4:-66453245	MS.gene54919:CDS
GTGGTTGTTGACAAATTCTC+TGG	0.436058	4.4:-66453183	MS.gene54919:CDS
GAAAGTAGATATGGTGGAAG+TGG	0.439807	4.4:-66452844	MS.gene54919:CDS
CCAGATCCACGTCGTTCATA+TGG	0.442836	4.4:+66452697	None:intergenic
CGAGATTACCGAGGTGGTCG+AGG	0.461040	4.4:-66452973	MS.gene54919:CDS
GGTGGTAGAGAAAGTAGATA+TGG	0.473535	4.4:-66452853	MS.gene54919:CDS
TACTATGGTCCAGATAGAAA+TGG	0.474075	4.4:-66452811	MS.gene54919:CDS
CTCTATCAACAGTAATAGTT+CGG	0.474868	4.4:+66453070	None:intergenic
ATGAATGGGATAGATTTAGA+TGG	0.485420	4.4:-66453093	MS.gene54919:CDS
AGATATGGTGGAAGTGGTGG+TGG	0.486452	4.4:-66452838	MS.gene54919:CDS
AACATCCGATAGAAAGTTAA+GGG	0.491433	4.4:-66453244	MS.gene54919:CDS
CAAGGATCCTCTAGAGATGA+TGG	0.492928	4.4:-66453036	MS.gene54919:CDS
CACGATCGCGACCACGCTCT+TGG	0.499974	4.4:+66453004	None:intergenic
TCTGGCGGTCGCAGCAGGGA+TGG	0.500920	4.4:-66452778	MS.gene54919:CDS
GGTAGAGAAAGTAGATATGG+TGG	0.507553	4.4:-66452850	MS.gene54919:CDS
AAATTCTCTGGACGCTCTCG+TGG	0.522134	4.4:-66453171	MS.gene54919:CDS
GATGCTATTGATGCTATGAA+TGG	0.526053	4.4:-66453108	MS.gene54919:CDS
TGTATCCCTTAACTTTCTAT+CGG	0.530467	4.4:+66453239	None:intergenic
TGCTTCAATTGTGGTAAACC+TGG	0.534286	4.4:-66452934	MS.gene54919:CDS
TATGGTGGAAGTGGTGGTGG+TGG	0.541170	4.4:-66452835	MS.gene54919:CDS
GGGAGTGCCCTAGTGGTGAA+GGG	0.544084	4.4:-66452900	MS.gene54919:CDS
TTCTTCTGGCGGTCGCAGCA+GGG	0.544328	4.4:-66452782	MS.gene54919:CDS
TGGCAAGCTTACAGAGGCCA+AGG	0.548700	4.4:-66453205	MS.gene54919:CDS
TATCGTGATCGTGATCGTGC+TGG	0.552506	4.4:-66452721	MS.gene54919:CDS
GGCGGTCGCAGCAGGGATGG+TGG	0.563764	4.4:-66452775	MS.gene54919:CDS
AGCAGGGATGGTGGTAGTCG+TGG	0.574692	4.4:-66452766	MS.gene54919:CDS
CACTCCCTAGCAAAATGACC+AGG	0.578775	4.4:+66452916	None:intergenic
GGTGGTCGAGGATCTAATGA+TGG	0.580077	4.4:-66452961	MS.gene54919:CDS
GGAGTGCCCTAGTGGTGAAG+GGG	0.582980	4.4:-66452899	MS.gene54919:CDS
AGTAGATATGGTGGAAGTGG+TGG	0.583787	4.4:-66452841	MS.gene54919:CDS
ATGCTATTGATGCTATGAAT+GGG	0.592487	4.4:-66453107	MS.gene54919:CDS
TTTGCTAGGGAGTGCCCTAG+TGG	0.594989	4.4:-66452907	MS.gene54919:CDS
GAATTTGTCAACAACCACCT+TGG	0.603460	4.4:+66453188	None:intergenic
GAACGACGTGGATCTGGAGG+CGG	0.604365	4.4:-66452691	MS.gene54919:CDS
ATATGATGAAAAGAAAGCAA+TGG	0.616878	4.4:-66453133	MS.gene54919:CDS
ATCGGATGTTGACCAAGCAA+AGG	0.628290	4.4:+66453257	None:intergenic
GAGTGCCCTAGTGGTGAAGG+GGG	0.631815	4.4:-66452898	MS.gene54919:CDS
TCTCTAGAGGATCCTTGTTG+AGG	0.640001	4.4:+66453042	None:intergenic
TATGAACGACGTGGATCTGG+AGG	0.640937	4.4:-66452694	MS.gene54919:CDS
GATAGAGCTCAGCCTCAACA+AGG	0.641644	4.4:-66453054	MS.gene54919:CDS
GCGATCACCATCATCTCTAG+AGG	0.642537	4.4:+66453029	None:intergenic
CATTAGATCCTCGACCACCT+CGG	0.645981	4.4:+66452965	None:intergenic
AATGGAGATCGTTCTTCTGG+CGG	0.649243	4.4:-66452793	MS.gene54919:CDS
GATGGAGGATGCTTCAATTG+TGG	0.663732	4.4:-66452943	MS.gene54919:CDS
AAAGTTTGGCAAGCTTACAG+AGG	0.664669	4.4:-66453211	MS.gene54919:CDS
GGTCGAGGATCTAATGATGG+AGG	0.667781	4.4:-66452958	MS.gene54919:CDS
CAAGCTTACAGAGGCCAAGG+TGG	0.673955	4.4:-66453202	MS.gene54919:CDS
GGTGATCGCTACCAAGAGCG+TGG	0.682193	4.4:-66453015	MS.gene54919:CDS
CGTGATCGAGATTACCGAGG+TGG	0.697615	4.4:-66452979	MS.gene54919:CDS
GCTGGACCATATGAACGACG+TGG	0.755617	4.4:-66452703	MS.gene54919:CDS
GAACGTGATCGAGATTACCG+AGG	0.756337	4.4:-66452982	MS.gene54919:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	ATATGATGAAAAGAAAGCAA+TGG	-	chr4.4:66452830-66452849	MS.gene54919:CDS	25.0%
	AACATCCGATAGAAAGTTAA+GGG	-	chr4.4:66452719-66452738	MS.gene54919:CDS	30.0%
	AGGGATACATTTGAAAAGTT+TGG	-	chr4.4:66452738-66452757	MS.gene54919:CDS	30.0%
	ATGAATGGGATAGATTTAGA+TGG	-	chr4.4:66452870-66452889	MS.gene54919:CDS	30.0%
	ATGCTATTGATGCTATGAAT+GGG	-	chr4.4:66452856-66452875	MS.gene54919:CDS	30.0%
	CTCTATCAACAGTAATAGTT+CGG	+	chr4.4:66452896-66452915	None:intergenic	30.0%
	TGTATCCCTTAACTTTCTAT+CGG	+	chr4.4:66452727-66452746	None:intergenic	30.0%
	CAACATCCGATAGAAAGTTA+AGG	-	chr4.4:66452718-66452737	MS.gene54919:CDS	35.0%
	GATGCTATTGATGCTATGAA+TGG	-	chr4.4:66452855-66452874	MS.gene54919:CDS	35.0%
	TACTATGGTCCAGATAGAAA+TGG	-	chr4.4:66453152-66453171	MS.gene54919:CDS	35.0%
!!	TAAACCTGGTCATTTTGCTA+GGG	-	chr4.4:66453043-66453062	MS.gene54919:CDS	35.0%
	AAAGTTTGGCAAGCTTACAG+AGG	-	chr4.4:66452752-66452771	MS.gene54919:CDS	40.0%
	AGAAATGGAGATCGTTCTTC+TGG	-	chr4.4:66453167-66453186	MS.gene54919:CDS	40.0%
	GAACGATCTCCATTTCTATC+TGG	+	chr4.4:66453164-66453183	None:intergenic	40.0%
	GAATTTGTCAACAACCACCT+TGG	+	chr4.4:66452778-66452797	None:intergenic	40.0%
	GGTAGAGAAAGTAGATATGG+TGG	-	chr4.4:66453113-66453132	MS.gene54919:CDS	40.0%
	GGTGGTAGAGAAAGTAGATA+TGG	-	chr4.4:66453110-66453129	MS.gene54919:CDS	40.0%
	GTGGTTGTTGACAAATTCTC+TGG	-	chr4.4:66452780-66452799	MS.gene54919:CDS	40.0%
	TGCTTCAATTGTGGTAAACC+TGG	-	chr4.4:66453029-66453048	MS.gene54919:CDS	40.0%
!	GAAAGTAGATATGGTGGAAG+TGG	-	chr4.4:66453119-66453138	MS.gene54919:CDS	40.0%
!!	GAGTATCGTTGTTTTGTTGG+TGG	-	chr4.4:66452683-66452702	MS.gene54919:CDS	40.0%
!!	GTAAACCTGGTCATTTTGCT+AGG	-	chr4.4:66453042-66453061	MS.gene54919:CDS	40.0%
	AATGGAGATCGTTCTTCTGG+CGG	-	chr4.4:66453170-66453189	MS.gene54919:CDS	45.0%
	ATCGGATGTTGACCAAGCAA+AGG	+	chr4.4:66452709-66452728	None:intergenic	45.0%
	GATGGAGGATGCTTCAATTG+TGG	-	chr4.4:66453020-66453039	MS.gene54919:CDS	45.0%
!	AGTAGATATGGTGGAAGTGG+TGG	-	chr4.4:66453122-66453141	MS.gene54919:CDS	45.0%
!	CAAGGATCCTCTAGAGATGA+TGG	-	chr4.4:66452927-66452946	MS.gene54919:CDS	45.0%
!	TCTCTAGAGGATCCTTGTTG+AGG	+	chr4.4:66452924-66452943	None:intergenic	45.0%
!!!	TTTTGTTGGTGGCCTTTGCT+TGG	-	chr4.4:66452694-66452713	MS.gene54919:CDS	45.0%
	AAATTCTCTGGACGCTCTCG+TGG	-	chr4.4:66452792-66452811	MS.gene54919:CDS	50.0%
	CACTCCCTAGCAAAATGACC+AGG	+	chr4.4:66453050-66453069	None:intergenic	50.0%
	CATTAGATCCTCGACCACCT+CGG	+	chr4.4:66453001-66453020	None:intergenic	50.0%
	CCAGATCCACGTCGTTCATA+TGG	+	chr4.4:66453269-66453288	None:intergenic	50.0%
	CCATATGAACGACGTGGATC+TGG	-	chr4.4:66453266-66453285	MS.gene54919:CDS	50.0%
	GAACGTGATCGAGATTACCG+AGG	-	chr4.4:66452981-66453000	MS.gene54919:CDS	50.0%
	GATAGAGCTCAGCCTCAACA+AGG	-	chr4.4:66452909-66452928	MS.gene54919:CDS	50.0%
	GCGATCACCATCATCTCTAG+AGG	+	chr4.4:66452937-66452956	None:intergenic	50.0%
	GGTCGAGGATCTAATGATGG+AGG	-	chr4.4:66453005-66453024	MS.gene54919:CDS	50.0%
	GGTGGTCGAGGATCTAATGA+TGG	-	chr4.4:66453002-66453021	MS.gene54919:CDS	50.0%
	TATCGTGATCGTGATCGTGC+TGG	-	chr4.4:66453242-66453261	MS.gene54919:CDS	50.0%
	TATGAACGACGTGGATCTGG+AGG	-	chr4.4:66453269-66453288	MS.gene54919:CDS	50.0%
!	AGATATGGTGGAAGTGGTGG+TGG	-	chr4.4:66453125-66453144	MS.gene54919:CDS	50.0%
!!	AGTGGTGGTGGTGGTTACTA+TGG	-	chr4.4:66453137-66453156	MS.gene54919:CDS	50.0%
	CAAGCTTACAGAGGCCAAGG+TGG	-	chr4.4:66452761-66452780	MS.gene54919:CDS	55.0%
	CGTGATCGAGATTACCGAGG+TGG	-	chr4.4:66452984-66453003	MS.gene54919:CDS	55.0%
	CTAGTGGTGAAGGGGGAAGA+GGG	-	chr4.4:66453072-66453091	MS.gene54919:CDS	55.0%
	CTCTTCCCCCTTCACCACTA+GGG	+	chr4.4:66453073-66453092	None:intergenic	55.0%
	GCTGGACCATATGAACGACG+TGG	-	chr4.4:66453260-66453279	MS.gene54919:CDS	55.0%
	GGTGGTAGTCGTGGAGATTC+TGG	-	chr4.4:66453206-66453225	MS.gene54919:CDS	55.0%
	TAGTGGTGAAGGGGGAAGAG+GGG	-	chr4.4:66453073-66453092	MS.gene54919:CDS	55.0%
	TGGCAAGCTTACAGAGGCCA+AGG	-	chr4.4:66452758-66452777	MS.gene54919:CDS	55.0%
!	TCTGGACGCTCTCGTGGTTT+TGG	-	chr4.4:66452798-66452817	MS.gene54919:CDS	55.0%
!!	TATGGTGGAAGTGGTGGTGG+TGG	-	chr4.4:66453128-66453147	MS.gene54919:CDS	55.0%
!!	TTTGCTAGGGAGTGCCCTAG+TGG	-	chr4.4:66453056-66453075	MS.gene54919:CDS	55.0%
	AGTGGTGAAGGGGGAAGAGG+GGG	-	chr4.4:66453074-66453093	MS.gene54919:CDS	60.0%
	CCTAGTGGTGAAGGGGGAAG+AGG	-	chr4.4:66453071-66453090	MS.gene54919:CDS	60.0%
	CCTCTTCCCCCTTCACCACT+AGG	+	chr4.4:66453074-66453093	None:intergenic	60.0%
	CGAGATTACCGAGGTGGTCG+AGG	-	chr4.4:66452990-66453009	MS.gene54919:CDS	60.0%
	GAACGACGTGGATCTGGAGG+CGG	-	chr4.4:66453272-66453291	MS.gene54919:CDS	60.0%
	GAGTGCCCTAGTGGTGAAGG+GGG	-	chr4.4:66453065-66453084	MS.gene54919:CDS	60.0%
	GGTGATCGCTACCAAGAGCG+TGG	-	chr4.4:66452948-66452967	MS.gene54919:CDS	60.0%
	TTCTTCTGGCGGTCGCAGCA+GGG	-	chr4.4:66453181-66453200	MS.gene54919:CDS	60.0%
!	AGCAGGGATGGTGGTAGTCG+TGG	-	chr4.4:66453197-66453216	MS.gene54919:CDS	60.0%
!	GGAGTGCCCTAGTGGTGAAG+GGG	-	chr4.4:66453064-66453083	MS.gene54919:CDS	60.0%
!!	AGGGAGTGCCCTAGTGGTGA+AGG	-	chr4.4:66453062-66453081	MS.gene54919:CDS	60.0%
!!	GGGAGTGCCCTAGTGGTGAA+GGG	-	chr4.4:66453063-66453082	MS.gene54919:CDS	60.0%
	AGAGGGGGAGGGGGAAGGTA+TGG	-	chr4.4:66453089-66453108	MS.gene54919:CDS	65.0%
	CACGATCGCGACCACGCTCT+TGG	+	chr4.4:66452962-66452981	None:intergenic	65.0%
	GTGAAGGGGGAAGAGGGGGA+GGG	-	chr4.4:66453078-66453097	MS.gene54919:CDS	65.0%
	GTTCTTCTGGCGGTCGCAGC+AGG	-	chr4.4:66453180-66453199	MS.gene54919:CDS	65.0%
	TGAAGGGGGAAGAGGGGGAG+GGG	-	chr4.4:66453079-66453098	MS.gene54919:CDS	65.0%
	GAAGGGGGAAGAGGGGGAGG+GGG	-	chr4.4:66453080-66453099	MS.gene54919:CDS	70.0%
	GGTGAAGGGGGAAGAGGGGG+AGG	-	chr4.4:66453077-66453096	MS.gene54919:CDS	70.0%
	TCTGGCGGTCGCAGCAGGGA+TGG	-	chr4.4:66453185-66453204	MS.gene54919:CDS	70.0%
!	GGGGGAGGGGGAAGGTATGG+TGG	-	chr4.4:66453092-66453111	MS.gene54919:CDS	70.0%
	GGCGGTCGCAGCAGGGATGG+TGG	-	chr4.4:66453188-66453207	MS.gene54919:CDS	75.0%
	GGGGAAGAGGGGGAGGGGGA+AGG	-	chr4.4:66453084-66453103	MS.gene54919:CDS	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	66452681	66453304	66452681	ID=MS.gene54919
chr4.4	mRNA	66452681	66453304	66452681	ID=MS.gene54919.t1;Parent=MS.gene54919
chr4.4	exon	66452681	66453304	66452681	ID=MS.gene54919.t1.exon1;Parent=MS.gene54919.t1
chr4.4	CDS	66452681	66453304	66452681	ID=cds.MS.gene54919.t1;Parent=MS.gene54919.t1

Gene Sequence

>MS.gene54919

ATGAGTATCGTTGTTTTGTTGGTGGCCTTTGCTTGGTCAACATCCGATAGAAAGTTAAGGGATACATTTGAAAAGTTTGGCAAGCTTACAGAGGCCAAGGTGGTTGTTGACAAATTCTCTGGACGCTCTCGTGGTTTTGGATTTGTCACATATGATGAAAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGGATAGATTTAGATGGCCGAACTATTACTGTTGATAGAGCTCAGCCTCAACAAGGATCCTCTAGAGATGATGGTGATCGCTACCAAGAGCGTGGTCGCGATCGTGAACGTGATCGAGATTACCGAGGTGGTCGAGGATCTAATGATGGAGGATGCTTCAATTGTGGTAAACCTGGTCATTTTGCTAGGGAGTGCCCTAGTGGTGAAGGGGGAAGAGGGGGAGGGGGAAGGTATGGTGGTAGAGAAAGTAGATATGGTGGAAGTGGTGGTGGTGGTTACTATGGTCCAGATAGAAATGGAGATCGTTCTTCTGGCGGTCGCAGCAGGGATGGTGGTAGTCGTGGAGATTCTGGAAGTGATCGATACTATCGTGATCGTGATCGTGCTGGACCATATGAACGACGTGGATCTGGAGGCGGCTATCGTTGA

Protein sequence

>MS.gene54919.t1

MSIVVLLVAFAWSTSDRKLRDTFEKFGKLTEAKVVVDKFSGRSRGFGFVTYDEKKAMEDAIDAMNGIDLDGRTITVDRAQPQQGSSRDDGDRYQERGRDRERDRDYRGGRGSNDGGCFNCGKPGHFARECPSGEGGRGGGGRYGGRESRYGGSGGGGYYGPDRNGDRSSGGRSRDGGSRGDSGSDRYYRDRDRAGPYERRGSGGGYR