Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67889.t1 | XP_003594693.1 | 94.3 | 246 | 14 | 0 | 1 | 246 | 52 | 297 | 1.20E-131 | 479.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67889.t1 | P22242 | 59.9 | 247 | 87 | 2 | 2 | 236 | 52 | 298 | 1.5e-79 | 297.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67889.t1 | A2Q669 | 94.3 | 246 | 14 | 0 | 1 | 246 | 52 | 297 | 8.4e-132 | 479.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene67889 | -0.80232 | 5.93E-49 | -1.69E-46 |
| MS.gene049232 | MS.gene67889 | -0.808758 | 2.65E-50 | -1.69E-46 |
| MS.gene049259 | MS.gene67889 | 0.80318 | 3.94E-49 | -1.69E-46 |
| MS.gene049281 | MS.gene67889 | 0.848659 | 5.32E-60 | -1.69E-46 |
| MS.gene049285 | MS.gene67889 | -0.812283 | 4.58E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene67889 | -0.823691 | 1.21E-53 | -1.69E-46 |
| MS.gene049611 | MS.gene67889 | 0.832675 | 8.25E-56 | -1.69E-46 |
| MS.gene050082 | MS.gene67889 | 0.833495 | 5.16E-56 | -1.69E-46 |
| MS.gene05010 | MS.gene67889 | -0.802351 | 5.85E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene67889 | -0.803868 | 2.84E-49 | -1.69E-46 |
| MS.gene050165 | MS.gene67889 | -0.809768 | 1.61E-50 | -1.69E-46 |
| MS.gene050170 | MS.gene67889 | -0.801303 | 9.60E-49 | -1.69E-46 |
| MS.gene050323 | MS.gene67889 | -0.818295 | 2.11E-52 | -1.69E-46 |
| MS.gene050381 | MS.gene67889 | 0.845287 | 4.46E-59 | -1.69E-46 |
| MS.gene050496 | MS.gene67889 | -0.840809 | 6.95E-58 | -1.69E-46 |
| MS.gene050504 | MS.gene67889 | -0.824387 | 8.30E-54 | -1.69E-46 |
| MS.gene050612 | MS.gene67889 | -0.821632 | 3.64E-53 | -1.69E-46 |
| MS.gene050675 | MS.gene67889 | -0.813228 | 2.85E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene67889 | -0.82655 | 2.55E-54 | -1.69E-46 |
| MS.gene050871 | MS.gene67889 | -0.824711 | 6.96E-54 | -1.69E-46 |
| MS.gene050883 | MS.gene67889 | 0.808643 | 2.80E-50 | -1.69E-46 |
| MS.gene050986 | MS.gene67889 | -0.800333 | 1.51E-48 | -1.69E-46 |
| MS.gene051044 | MS.gene67889 | 0.863777 | 1.95E-64 | -1.69E-46 |
| MS.gene05104 | MS.gene67889 | 0.824259 | 8.89E-54 | -1.69E-46 |
| MS.gene051127 | MS.gene67889 | 0.831108 | 2.01E-55 | -1.69E-46 |
| MS.gene051138 | MS.gene67889 | 0.843617 | 1.25E-58 | -1.69E-46 |
| MS.gene051268 | MS.gene67889 | -0.82348 | 1.35E-53 | -1.69E-46 |
| MS.gene051364 | MS.gene67889 | 0.840253 | 9.72E-58 | -1.69E-46 |
| MS.gene051366 | MS.gene67889 | 0.83897 | 2.09E-57 | -1.69E-46 |
| MS.gene051367 | MS.gene67889 | 0.803639 | 3.17E-49 | -1.69E-46 |
| MS.gene051422 | MS.gene67889 | 0.82335 | 1.45E-53 | -1.69E-46 |
| MS.gene051651 | MS.gene67889 | 0.80532 | 1.41E-49 | -1.69E-46 |
| MS.gene052916 | MS.gene67889 | -0.809685 | 1.67E-50 | -1.69E-46 |
| MS.gene053069 | MS.gene67889 | 0.820804 | 5.65E-53 | -1.69E-46 |
| MS.gene053420 | MS.gene67889 | 0.866671 | 2.40E-65 | -1.69E-46 |
| MS.gene053488 | MS.gene67889 | 0.802687 | 4.98E-49 | -1.69E-46 |
| MS.gene053887 | MS.gene67889 | 0.800867 | 1.18E-48 | -1.69E-46 |
| MS.gene054056 | MS.gene67889 | 0.849148 | 3.89E-60 | -1.69E-46 |
| MS.gene054642 | MS.gene67889 | -0.806053 | 9.91E-50 | -1.69E-46 |
| MS.gene054706 | MS.gene67889 | 0.812781 | 3.57E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene67889 | -0.801852 | 7.40E-49 | -1.69E-46 |
| MS.gene05483 | MS.gene67889 | 0.807879 | 4.07E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene67889 | -0.824556 | 7.57E-54 | -1.69E-46 |
| MS.gene054959 | MS.gene67889 | 0.840099 | 1.07E-57 | -1.69E-46 |
| MS.gene055154 | MS.gene67889 | 0.834283 | 3.28E-56 | -1.69E-46 |
| MS.gene055202 | MS.gene67889 | 0.814204 | 1.74E-51 | -1.69E-46 |
| MS.gene055362 | MS.gene67889 | -0.813899 | 2.03E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene67889 | -0.804275 | 2.34E-49 | -1.69E-46 |
| MS.gene055577 | MS.gene67889 | -0.812481 | 4.15E-51 | -1.69E-46 |
| MS.gene055751 | MS.gene67889 | -0.810894 | 9.18E-51 | -1.69E-46 |
| MS.gene055776 | MS.gene67889 | -0.804172 | 2.45E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene67889 | -0.827115 | 1.87E-54 | -1.69E-46 |
| MS.gene055942 | MS.gene67889 | 0.851965 | 6.29E-61 | -1.69E-46 |
| MS.gene056224 | MS.gene67889 | 0.807388 | 5.18E-50 | -1.69E-46 |
| MS.gene056359 | MS.gene67889 | 0.802997 | 4.30E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene67889 | -0.843765 | 1.15E-58 | -1.69E-46 |
| MS.gene056657 | MS.gene67889 | -0.810177 | 1.31E-50 | -1.69E-46 |
| MS.gene056692 | MS.gene67889 | -0.811237 | 7.74E-51 | -1.69E-46 |
| MS.gene056761 | MS.gene67889 | 0.81344 | 2.56E-51 | -1.69E-46 |
| MS.gene056856 | MS.gene67889 | 0.851329 | 9.53E-61 | -1.69E-46 |
| MS.gene056857 | MS.gene67889 | 0.817429 | 3.31E-52 | -1.69E-46 |
| MS.gene057014 | MS.gene67889 | 0.805153 | 1.53E-49 | -1.69E-46 |
| MS.gene057549 | MS.gene67889 | 0.829958 | 3.85E-55 | -1.69E-46 |
| MS.gene058067 | MS.gene67889 | 0.823365 | 1.44E-53 | -1.69E-46 |
| MS.gene058068 | MS.gene67889 | 0.844384 | 7.82E-59 | -1.69E-46 |
| MS.gene058093 | MS.gene67889 | 0.806525 | 7.89E-50 | -1.69E-46 |
| MS.gene058099 | MS.gene67889 | 0.857079 | 2.08E-62 | -1.69E-46 |
| MS.gene058109 | MS.gene67889 | 0.823792 | 1.14E-53 | -1.69E-46 |
| MS.gene058117 | MS.gene67889 | 0.81476 | 1.31E-51 | -1.69E-46 |
| MS.gene058157 | MS.gene67889 | -0.801369 | 9.30E-49 | -1.69E-46 |
| MS.gene058175 | MS.gene67889 | 0.800797 | 1.22E-48 | -1.69E-46 |
| MS.gene058268 | MS.gene67889 | 0.999442 | 5.430900e-312 | -1.69E-46 |
| MS.gene058269 | MS.gene67889 | 0.980751 | 6.01E-151 | -1.69E-46 |
| MS.gene058334 | MS.gene67889 | 0.800101 | 1.69E-48 | -1.69E-46 |
| MS.gene058419 | MS.gene67889 | -0.808044 | 3.76E-50 | -1.69E-46 |
| MS.gene058628 | MS.gene67889 | 0.806875 | 6.65E-50 | -1.69E-46 |
| MS.gene058630 | MS.gene67889 | 0.802295 | 6.00E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene67889 | -0.833434 | 5.34E-56 | -1.69E-46 |
| MS.gene059045 | MS.gene67889 | 0.817979 | 2.49E-52 | -1.69E-46 |
| MS.gene05913 | MS.gene67889 | -0.800176 | 1.63E-48 | -1.69E-46 |
| MS.gene059315 | MS.gene67889 | 0.812607 | 3.89E-51 | -1.69E-46 |
| MS.gene059677 | MS.gene67889 | -0.821424 | 4.07E-53 | -1.69E-46 |
| MS.gene059718 | MS.gene67889 | -0.804883 | 1.74E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene67889 | -0.839261 | 1.76E-57 | -1.69E-46 |
| MS.gene059953 | MS.gene67889 | 0.809979 | 1.45E-50 | -1.69E-46 |
| MS.gene060096 | MS.gene67889 | 0.803734 | 3.03E-49 | -1.69E-46 |
| MS.gene060595 | MS.gene67889 | 0.819556 | 1.09E-52 | -1.69E-46 |
| MS.gene060703 | MS.gene67889 | -0.815563 | 8.67E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene67889 | -0.816754 | 4.70E-52 | -1.69E-46 |
| MS.gene060778 | MS.gene67889 | -0.818413 | 1.99E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene67889 | -0.817151 | 3.83E-52 | -1.69E-46 |
| MS.gene060982 | MS.gene67889 | -0.816819 | 4.54E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 69 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCTTAATTTAGAATATT+TGG | 0.125218 | 2.2:-55261186 | None:intergenic |
| TGTACCCAGTTTGGCCATTT+TGG | 0.134807 | 2.2:+55261073 | None:intergenic |
| CAGCTAGTTGCAGGCCTTCT+AGG | 0.184241 | 2.2:-55260304 | MS.gene67889:CDS |
| AAGGATATTATCTTGCAATT+TGG | 0.237243 | 2.2:-55261044 | MS.gene67889:CDS |
| CAAACTGGGTACATTTATTA+AGG | 0.242603 | 2.2:-55261063 | MS.gene67889:CDS |
| CCCACCTATTGGGGCCAAAA+TGG | 0.283148 | 2.2:-55261087 | MS.gene67889:CDS |
| TGGGGCCAAAATGGCCAAAC+TGG | 0.309884 | 2.2:-55261078 | MS.gene67889:CDS |
| TCAGCGCTTAGGAATGAATT+AGG | 0.319413 | 2.2:-55260175 | MS.gene67889:CDS |
| CTTAATAAATGTACCCAGTT+TGG | 0.325391 | 2.2:+55261064 | None:intergenic |
| ATTCCTTATGTCGGTCTTAC+CGG | 0.330047 | 2.2:-55260696 | MS.gene67889:CDS |
| GAAATATTGAGAATTGTATA+TGG | 0.347955 | 2.2:-55260067 | MS.gene67889:CDS |
| ACAATTCTCAATATTTCAAT+TGG | 0.353451 | 2.2:+55260073 | None:intergenic |
| ATCTCAGGAAATATCCTTGC+TGG | 0.373800 | 2.2:-55260127 | MS.gene67889:CDS |
| CAATTTGGTTTGCAAGAAGT+TGG | 0.389960 | 2.2:-55261029 | MS.gene67889:CDS |
| GCATGGAAGGTGTATCCTTA+TGG | 0.391268 | 2.2:-55260229 | MS.gene67889:CDS |
| TGGATTGGATGTAGTTGATT+CGG | 0.408733 | 2.2:-55261129 | MS.gene67889:CDS |
| CTTAGATCCATACATGGCCT+TGG | 0.431043 | 2.2:+55260825 | None:intergenic |
| AAGTTGACATCATTTGCATA+TGG | 0.448703 | 2.2:+55260738 | None:intergenic |
| GGGGTTCCCAAGGCCATGTA+TGG | 0.457536 | 2.2:-55260832 | MS.gene67889:CDS |
| GGCCTTCTAGGAGTGGAATC+AGG | 0.458196 | 2.2:-55260292 | MS.gene67889:CDS |
| GGCCTGATTCCACTCCTAGA+AGG | 0.458732 | 2.2:+55260290 | None:intergenic |
| TCATTTGCATATGGATCAAA+AGG | 0.461244 | 2.2:+55260747 | None:intergenic |
| AGCAAGGATATTTCCTGAGA+TGG | 0.467561 | 2.2:+55260129 | None:intergenic |
| AAGGTGATGGATAGTGCCTT+TGG | 0.473626 | 2.2:-55260786 | MS.gene67889:CDS |
| TGCAAGAAGTTGGACATTTG+AGG | 0.477314 | 2.2:-55261019 | MS.gene67889:intron |
| TGGATCATTAGGTCATGGAT+TGG | 0.491581 | 2.2:-55261144 | MS.gene67889:CDS |
| TCCTACAAAATGCTACTTCG+AGG | 0.497607 | 2.2:-55260653 | MS.gene67889:CDS |
| GTCGGTCTTACCGGCTATGT+TGG | 0.505513 | 2.2:-55260687 | MS.gene67889:CDS |
| TCTGCCACAGTTACTCCATA+AGG | 0.507698 | 2.2:+55260214 | None:intergenic |
| TTAGATCCATACATGGCCTT+GGG | 0.510288 | 2.2:+55260826 | None:intergenic |
| CTAATCGCATCTCAGCGCTT+AGG | 0.514135 | 2.2:-55260186 | MS.gene67889:CDS |
| GCTATAAAGAGCACAGTGAA+GGG | 0.515388 | 2.2:-55260852 | MS.gene67889:CDS |
| ATCATCATTTGCCAAGGTGA+TGG | 0.516251 | 2.2:-55260799 | MS.gene67889:CDS |
| CCTCTAGGGTAGAAGCCACC+TGG | 0.517093 | 2.2:+55260025 | None:intergenic |
| ATAACACCATCTCCTCCTCT+AGG | 0.519512 | 2.2:+55260010 | None:intergenic |
| ATAAAAGATGAACCCATCTC+AGG | 0.525491 | 2.2:-55260142 | MS.gene67889:CDS |
| GGCTATAAAGAGCACAGTGA+AGG | 0.527779 | 2.2:-55260853 | MS.gene67889:CDS |
| GCAAGGATATTTCCTGAGAT+GGG | 0.529908 | 2.2:+55260130 | None:intergenic |
| GGATCAAAAGGTGGGTGTAG+AGG | 0.531869 | 2.2:+55260759 | None:intergenic |
| TTATTTGGATCATTAGGTCA+TGG | 0.533706 | 2.2:-55261149 | MS.gene67889:CDS |
| TGTTATACGAACGACGTGCA+TGG | 0.542914 | 2.2:-55260246 | MS.gene67889:CDS |
| TGGATTGGTGCCAACATAGC+CGG | 0.545039 | 2.2:+55260677 | None:intergenic |
| TTGAGAATTGTATATGGAAG+TGG | 0.548661 | 2.2:-55260061 | MS.gene67889:CDS |
| GTTGATTCGGATTTAGCAGA+GGG | 0.554995 | 2.2:-55261116 | MS.gene67889:CDS |
| ATACGAACGACGTGCATGGA+AGG | 0.556244 | 2.2:-55260242 | MS.gene67889:CDS |
| TTCTACCCTAGAGGAGGAGA+TGG | 0.561993 | 2.2:-55260016 | MS.gene67889:CDS |
| ATGATCGTATAACTGCATCT+TGG | 0.571142 | 2.2:+55260269 | None:intergenic |
| TAGCCGGTAAGACCGACATA+AGG | 0.572610 | 2.2:+55260693 | None:intergenic |
| CTCTAGGGTAGAAGCCACCT+GGG | 0.572783 | 2.2:+55260026 | None:intergenic |
| GATTCGGATTTAGCAGAGGG+TGG | 0.575302 | 2.2:-55261113 | MS.gene67889:CDS |
| TCTTATGTGATTCCTTATGT+CGG | 0.575588 | 2.2:-55260705 | MS.gene67889:CDS |
| TTTGCATATGGATCAAAAGG+TGG | 0.585853 | 2.2:+55260750 | None:intergenic |
| AGTGGTGATGAACATGTCCC+AGG | 0.596378 | 2.2:-55260043 | MS.gene67889:CDS |
| TAACACCATCTCCTCCTCTA+GGG | 0.597219 | 2.2:+55260011 | None:intergenic |
| ACAAAATGCTACTTCGAGGA+AGG | 0.597559 | 2.2:-55260649 | MS.gene67889:intron |
| CCAGGTGGCTTCTACCCTAG+AGG | 0.599664 | 2.2:-55260025 | MS.gene67889:CDS |
| GCACAGTGAAGGGGTTCCCA+AGG | 0.602015 | 2.2:-55260842 | MS.gene67889:CDS |
| AGTTGCAGGCCTTCTAGGAG+TGG | 0.603562 | 2.2:-55260299 | MS.gene67889:CDS |
| GGGGCCAAAATGGCCAAACT+GGG | 0.606123 | 2.2:-55261077 | MS.gene67889:CDS |
| TTGCATATGGATCAAAAGGT+GGG | 0.620461 | 2.2:+55260751 | None:intergenic |
| AAGCTCATCATCATTTGCCA+AGG | 0.621976 | 2.2:-55260805 | MS.gene67889:CDS |
| AAAGGCACTATCCATCACCT+TGG | 0.631525 | 2.2:+55260788 | None:intergenic |
| AGGAATGAATTAGGAAACGA+TGG | 0.646376 | 2.2:-55260166 | MS.gene67889:CDS |
| GATGAGCTTAGATCCATACA+TGG | 0.648355 | 2.2:+55260819 | None:intergenic |
| AGTTGATTCGGATTTAGCAG+AGG | 0.651747 | 2.2:-55261117 | MS.gene67889:CDS |
| GGTGGCTTCTACCCTAGAGG+AGG | 0.663458 | 2.2:-55260022 | MS.gene67889:CDS |
| CTATAAAGAGCACAGTGAAG+GGG | 0.666124 | 2.2:-55260851 | MS.gene67889:CDS |
| GTATCCTTATGGAGTAACTG+TGG | 0.688628 | 2.2:-55260218 | MS.gene67889:CDS |
| GGTGATGAACATGTCCCAGG+TGG | 0.767815 | 2.2:-55260040 | MS.gene67889:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACATTAAAATTATTTTAGT+AGG | + | chr2.2:55260817-55260836 | None:intergenic | 10.0% |
| !!! | TTGTATGAATCTTTATTTTA+GGG | - | chr2.2:55260280-55260299 | MS.gene67889:CDS | 15.0% |
| !! | ACAATTCTCAATATTTCAAT+TGG | + | chr2.2:55261084-55261103 | None:intergenic | 20.0% |
| !! | GAAATATTGAGAATTGTATA+TGG | - | chr2.2:55261087-55261106 | MS.gene67889:CDS | 20.0% |
| !! | GTTTACAAAACTAACTTAAA+AGG | + | chr2.2:55260735-55260754 | None:intergenic | 20.0% |
| !!! | ACTTGTTAGTAATAAAAGAA+TGG | - | chr2.2:55260590-55260609 | MS.gene67889:intron | 20.0% |
| !!! | ATGATAAAAAAAGTACTAGA+GGG | + | chr2.2:55260163-55260182 | None:intergenic | 20.0% |
| !!! | GTTGTATGAATCTTTATTTT+AGG | - | chr2.2:55260279-55260298 | MS.gene67889:CDS | 20.0% |
| !!! | GTTTTACTCGAAAATAAATA+AGG | - | chr2.2:55260684-55260703 | MS.gene67889:CDS | 20.0% |
| !!! | TTCTTTTTATTTGGATCATT+AGG | - | chr2.2:55259999-55260018 | MS.gene67889:CDS | 20.0% |
| ! | AAGGATATTATCTTGCAATT+TGG | - | chr2.2:55260110-55260129 | MS.gene67889:CDS | 25.0% |
| !! | GAAGCTGAATTCTTTTTATT+TGG | - | chr2.2:55259990-55260009 | MS.gene67889:CDS | 25.0% |
| !!! | ATTCACTTGCGATTTTATTT+AGG | - | chr2.2:55260651-55260670 | MS.gene67889:CDS | 25.0% |
| !!! | GATGATAAAAAAAGTACTAG+AGG | + | chr2.2:55260164-55260183 | None:intergenic | 25.0% |
| AAGTTGACATCATTTGCATA+TGG | + | chr2.2:55260419-55260438 | None:intergenic | 30.0% | |
| CAAACTGGGTACATTTATTA+AGG | - | chr2.2:55260091-55260110 | MS.gene67889:CDS | 30.0% | |
| CTTAATAAATGTACCCAGTT+TGG | + | chr2.2:55260093-55260112 | None:intergenic | 30.0% | |
| TCATTTGCATATGGATCAAA+AGG | + | chr2.2:55260410-55260429 | None:intergenic | 30.0% | |
| TCTTATGTGATTCCTTATGT+CGG | - | chr2.2:55260449-55260468 | MS.gene67889:intron | 30.0% | |
| TTATTTGGATCATTAGGTCA+TGG | - | chr2.2:55260005-55260024 | MS.gene67889:CDS | 30.0% | |
| TTGAGAATTGTATATGGAAG+TGG | - | chr2.2:55261093-55261112 | MS.gene67889:CDS | 30.0% | |
| AGGAATGAATTAGGAAACGA+TGG | - | chr2.2:55260988-55261007 | MS.gene67889:intron | 35.0% | |
| ATAAAAGATGAACCCATCTC+AGG | - | chr2.2:55261012-55261031 | MS.gene67889:intron | 35.0% | |
| ATGATCGTATAACTGCATCT+TGG | + | chr2.2:55260888-55260907 | None:intergenic | 35.0% | |
| TTGCATATGGATCAAAAGGT+GGG | + | chr2.2:55260406-55260425 | None:intergenic | 35.0% | |
| TTTGCATATGGATCAAAAGG+TGG | + | chr2.2:55260407-55260426 | None:intergenic | 35.0% | |
| ! | TGGATTGGATGTAGTTGATT+CGG | - | chr2.2:55260025-55260044 | MS.gene67889:CDS | 35.0% |
| !! | CAATTTGGTTTGCAAGAAGT+TGG | - | chr2.2:55260125-55260144 | MS.gene67889:CDS | 35.0% |
| !! | GAATTTTAACAGCTAGTTGC+AGG | - | chr2.2:55260841-55260860 | MS.gene67889:CDS | 35.0% |
| AAGCTCATCATCATTTGCCA+AGG | - | chr2.2:55260349-55260368 | MS.gene67889:intron | 40.0% | |
| AGCAAGGATATTTCCTGAGA+TGG | + | chr2.2:55261028-55261047 | None:intergenic | 40.0% | |
| AGTGAATAACACGCGTCAAT+CGG | + | chr2.2:55260638-55260657 | None:intergenic | 40.0% | |
| ATCATCATTTGCCAAGGTGA+TGG | - | chr2.2:55260355-55260374 | MS.gene67889:intron | 40.0% | |
| ATCTCAGGAAATATCCTTGC+TGG | - | chr2.2:55261027-55261046 | MS.gene67889:CDS | 40.0% | |
| ATTCCTTATGTCGGTCTTAC+CGG | - | chr2.2:55260458-55260477 | MS.gene67889:intron | 40.0% | |
| GATGAGCTTAGATCCATACA+TGG | + | chr2.2:55260338-55260357 | None:intergenic | 40.0% | |
| GCAAGGATATTTCCTGAGAT+GGG | + | chr2.2:55261027-55261046 | None:intergenic | 40.0% | |
| GTATCCTTATGGAGTAACTG+TGG | - | chr2.2:55260936-55260955 | MS.gene67889:intron | 40.0% | |
| TCAGCGCTTAGGAATGAATT+AGG | - | chr2.2:55260979-55260998 | MS.gene67889:intron | 40.0% | |
| TGCAAGAAGTTGGACATTTG+AGG | - | chr2.2:55260135-55260154 | MS.gene67889:CDS | 40.0% | |
| TGGATCATTAGGTCATGGAT+TGG | - | chr2.2:55260010-55260029 | MS.gene67889:CDS | 40.0% | |
| TTAGATCCATACATGGCCTT+GGG | + | chr2.2:55260331-55260350 | None:intergenic | 40.0% | |
| ! | ACAAAATGCTACTTCGAGGA+AGG | - | chr2.2:55260505-55260524 | MS.gene67889:intron | 40.0% |
| ! | AGCATTTTGTAGGAGTGGAT+TGG | + | chr2.2:55260495-55260514 | None:intergenic | 40.0% |
| ! | CTATAAAGAGCACAGTGAAG+GGG | - | chr2.2:55260303-55260322 | MS.gene67889:CDS | 40.0% |
| ! | GAAGTAGCATTTTGTAGGAG+TGG | + | chr2.2:55260500-55260519 | None:intergenic | 40.0% |
| ! | GCTATAAAGAGCACAGTGAA+GGG | - | chr2.2:55260302-55260321 | MS.gene67889:CDS | 40.0% |
| ! | GTGAATTTTCATCACCAGCA+AGG | + | chr2.2:55261044-55261063 | None:intergenic | 40.0% |
| ! | TCCTACAAAATGCTACTTCG+AGG | - | chr2.2:55260501-55260520 | MS.gene67889:intron | 40.0% |
| ! | TCCTCGAAGTAGCATTTTGT+AGG | + | chr2.2:55260505-55260524 | None:intergenic | 40.0% |
| !! | AGTTGATTCGGATTTAGCAG+AGG | - | chr2.2:55260037-55260056 | MS.gene67889:CDS | 40.0% |
| !! | GTTGATTCGGATTTAGCAGA+GGG | - | chr2.2:55260038-55260057 | MS.gene67889:CDS | 40.0% |
| AGTAGGTCGCGATGAAATCA+TGG | + | chr2.2:55260800-55260819 | None:intergenic | 45.0% | |
| ATAACACCATCTCCTCCTCT+AGG | + | chr2.2:55261147-55261166 | None:intergenic | 45.0% | |
| CTTAGATCCATACATGGCCT+TGG | + | chr2.2:55260332-55260351 | None:intergenic | 45.0% | |
| GTGAATAACACGCGTCAATC+GGG | + | chr2.2:55260637-55260656 | None:intergenic | 45.0% | |
| TAACACCATCTCCTCCTCTA+GGG | + | chr2.2:55261146-55261165 | None:intergenic | 45.0% | |
| TCTGCCACAGTTACTCCATA+AGG | + | chr2.2:55260943-55260962 | None:intergenic | 45.0% | |
| TGTTATACGAACGACGTGCA+TGG | - | chr2.2:55260908-55260927 | MS.gene67889:intron | 45.0% | |
| ! | GCATGGAAGGTGTATCCTTA+TGG | - | chr2.2:55260925-55260944 | MS.gene67889:intron | 45.0% |
| ! | GGCTATAAAGAGCACAGTGA+AGG | - | chr2.2:55260301-55260320 | MS.gene67889:CDS | 45.0% |
| ! | TGGGTGTAGAGGTTTTCCAA+AGG | + | chr2.2:55260387-55260406 | None:intergenic | 45.0% |
| ! | TGTACCCAGTTTGGCCATTT+TGG | + | chr2.2:55260084-55260103 | None:intergenic | 45.0% |
| !! | AAAGGCACTATCCATCACCT+TGG | + | chr2.2:55260369-55260388 | None:intergenic | 45.0% |
| !! | AAGGTGATGGATAGTGCCTT+TGG | - | chr2.2:55260368-55260387 | MS.gene67889:intron | 45.0% |
| ATACGAACGACGTGCATGGA+AGG | - | chr2.2:55260912-55260931 | MS.gene67889:intron | 50.0% | |
| CTAATCGCATCTCAGCGCTT+AGG | - | chr2.2:55260968-55260987 | MS.gene67889:intron | 50.0% | |
| GATTCGGATTTAGCAGAGGG+TGG | - | chr2.2:55260041-55260060 | MS.gene67889:CDS | 50.0% | |
| GGATCAAAAGGTGGGTGTAG+AGG | + | chr2.2:55260398-55260417 | None:intergenic | 50.0% | |
| TAGCCGGTAAGACCGACATA+AGG | + | chr2.2:55260464-55260483 | None:intergenic | 50.0% | |
| TTCTACCCTAGAGGAGGAGA+TGG | - | chr2.2:55261138-55261157 | MS.gene67889:CDS | 50.0% | |
| ! | AGTGGTGATGAACATGTCCC+AGG | - | chr2.2:55261111-55261130 | MS.gene67889:CDS | 50.0% |
| !! | ATTTTGGCCCCAATAGGTGG+GGG | + | chr2.2:55260068-55260087 | None:intergenic | 50.0% |
| !! | CATTTTGGCCCCAATAGGTG+GGG | + | chr2.2:55260069-55260088 | None:intergenic | 50.0% |
| !! | CCATTTTGGCCCCAATAGGT+GGG | + | chr2.2:55260070-55260089 | None:intergenic | 50.0% |
| !! | TGGATTGGTGCCAACATAGC+CGG | + | chr2.2:55260480-55260499 | None:intergenic | 50.0% |
| !! | TTGGCCATTTTGGCCCCAAT+AGG | + | chr2.2:55260074-55260093 | None:intergenic | 50.0% |
| CAGCTAGTTGCAGGCCTTCT+AGG | - | chr2.2:55260850-55260869 | MS.gene67889:CDS | 55.0% | |
| CCCACCTATTGGGGCCAAAA+TGG | - | chr2.2:55260067-55260086 | MS.gene67889:CDS | 55.0% | |
| GGCCTGATTCCACTCCTAGA+AGG | + | chr2.2:55260867-55260886 | None:intergenic | 55.0% | |
| GGGGCCAAAATGGCCAAACT+GGG | - | chr2.2:55260077-55260096 | MS.gene67889:CDS | 55.0% | |
| GGTGATGAACATGTCCCAGG+TGG | - | chr2.2:55261114-55261133 | MS.gene67889:CDS | 55.0% | |
| TGGGGCCAAAATGGCCAAAC+TGG | - | chr2.2:55260076-55260095 | MS.gene67889:CDS | 55.0% | |
| ! | AGTTGCAGGCCTTCTAGGAG+TGG | - | chr2.2:55260855-55260874 | MS.gene67889:CDS | 55.0% |
| ! | GGCCTTCTAGGAGTGGAATC+AGG | - | chr2.2:55260862-55260881 | MS.gene67889:intron | 55.0% |
| ! | GTCGGTCTTACCGGCTATGT+TGG | - | chr2.2:55260467-55260486 | MS.gene67889:intron | 55.0% |
| !! | CTCTAGGGTAGAAGCCACCT+GGG | + | chr2.2:55261131-55261150 | None:intergenic | 55.0% |
| !! | GCCATTTTGGCCCCAATAGG+TGG | + | chr2.2:55260071-55260090 | None:intergenic | 55.0% |
| AGGGTGGACCCCCACCTATT+GGG | - | chr2.2:55260057-55260076 | MS.gene67889:CDS | 60.0% | |
| CCAGGTGGCTTCTACCCTAG+AGG | - | chr2.2:55261129-55261148 | MS.gene67889:CDS | 60.0% | |
| GCACAGTGAAGGGGTTCCCA+AGG | - | chr2.2:55260312-55260331 | MS.gene67889:intron | 60.0% | |
| GGGGTTCCCAAGGCCATGTA+TGG | - | chr2.2:55260322-55260341 | MS.gene67889:intron | 60.0% | |
| GGTGGCTTCTACCCTAGAGG+AGG | - | chr2.2:55261132-55261151 | MS.gene67889:CDS | 60.0% | |
| !! | CCTCTAGGGTAGAAGCCACC+TGG | + | chr2.2:55261132-55261151 | None:intergenic | 60.0% |
| GAGGGTGGACCCCCACCTAT+TGG | - | chr2.2:55260056-55260075 | MS.gene67889:CDS | 65.0% | |
| GGGTGGACCCCCACCTATTG+GGG | - | chr2.2:55260058-55260077 | MS.gene67889:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 55259982 | 55261194 | 55259982 | ID=MS.gene67889 |
| chr2.2 | mRNA | 55259982 | 55261194 | 55259982 | ID=MS.gene67889.t1;Parent=MS.gene67889 |
| chr2.2 | exon | 55261020 | 55261194 | 55261020 | ID=MS.gene67889.t1.exon1;Parent=MS.gene67889.t1 |
| chr2.2 | CDS | 55261020 | 55261194 | 55261020 | ID=cds.MS.gene67889.t1;Parent=MS.gene67889.t1 |
| chr2.2 | exon | 55260650 | 55260875 | 55260650 | ID=MS.gene67889.t1.exon2;Parent=MS.gene67889.t1 |
| chr2.2 | CDS | 55260650 | 55260875 | 55260650 | ID=cds.MS.gene67889.t1;Parent=MS.gene67889.t1 |
| chr2.2 | exon | 55259982 | 55260323 | 55259982 | ID=MS.gene67889.t1.exon3;Parent=MS.gene67889.t1 |
| chr2.2 | CDS | 55259982 | 55260323 | 55259982 | ID=cds.MS.gene67889.t1;Parent=MS.gene67889.t1 |
| Gene Sequence |
| Protein sequence |
