AlfalfaGEDB | MS.gene68713

M. sativa cultivar XinJiangDaYe / MS.gene68713

KEGG: -
GO: GO:0003674 GO:0005215 GO:0005575 GO:0005887 GO:0006810 GO:0008150 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68713.t1	XP_013464044.1	92.5	440	16	1	1	423	50	489	5.20E-220	773.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68713.t1	Q9SL56	69.9	442	111	3	1	423	48	486	4.2e-170	599.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68713.t1	A0A072V7P9	92.5	440	16	1	1	423	50	489	3.7e-220	773.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04918	MS.gene68713	0.837779	4.25E-57	-1.69E-46
MS.gene04919	MS.gene68713	0.819713	1.01E-52	-1.69E-46
MS.gene04920	MS.gene68713	0.84792	8.52E-60	-1.69E-46
MS.gene049254	MS.gene68713	0.815785	7.74E-52	-1.69E-46
MS.gene049283	MS.gene68713	0.876169	1.73E-68	-1.69E-46
MS.gene049368	MS.gene68713	0.818356	2.05E-52	-1.69E-46
MS.gene049419	MS.gene68713	-0.807434	5.06E-50	-1.69E-46
MS.gene049499	MS.gene68713	0.846548	2.03E-59	-1.69E-46
MS.gene049680	MS.gene68713	0.812767	3.59E-51	-1.69E-46
MS.gene049983	MS.gene68713	0.85698	2.23E-62	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 118 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAAACGGAGCGACTCC+AGG	0.556148	2.4:-37462067	None:intergenic
AAAGCCCTGCGTACCGAGAT+CGG	0.516139	2.4:-37462575	None:intergenic
AAATCCAGAAAGAAACATCA+AGG	0.579928	2.4:-37462509	None:intergenic
AACCAATTCAACCCTTGATT+CGG	0.343395	2.4:+37461396	MS.gene68713:CDS
AAGGCGGCCAACCCGAATCA+AGG	0.499130	2.4:-37461408	None:intergenic
AATCATATCAGAAATGAAAC+CGG	0.508019	2.4:-37462386	None:intergenic
AATCTATCTCACAAAACTGC+TGG	0.446010	2.4:+37462313	MS.gene68713:CDS
AATTGAAATGAGTGTTGAAA+CGG	0.556957	2.4:+37461931	MS.gene68713:CDS
ACCAATGATATTCCCAACCG+AGG	0.679777	2.4:-37461762	None:intergenic
ACCAATTCAACCCTTGATTC+GGG	0.365317	2.4:+37461397	MS.gene68713:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCCAGAAAGAAACATCA+AGG	-	chr2.4:37462512-37462531	None:intergenic	30.0%
TTGCTTACACTTTCTTGTAT+TGG	+	chr2.4:37462113-37462132	MS.gene68713:CDS	30.0%
TTTCTTACTTCTTACTCCAT+TGG	+	chr2.4:37461478-37461497	MS.gene68713:CDS	30.0%
AACCAATTCAACCCTTGATT+CGG	+	chr2.4:37461396-37461415	MS.gene68713:CDS	35.0%
AATCTATCTCACAAAACTGC+TGG	+	chr2.4:37462313-37462332	MS.gene68713:CDS	35.0%
ACTGTTACTGCAATCATTGA+TGG	+	chr2.4:37462625-37462644	MS.gene68713:CDS	35.0%
AGCAGGTTATGTTTCAACTA+AGG	+	chr2.4:37462684-37462703	MS.gene68713:CDS	35.0%
ATCAAAGAGGGGATTGATAA+TGG	+	chr2.4:37461721-37461740	MS.gene68713:CDS	35.0%
ATCACCTTGATGTTTCTTTC+TGG	+	chr2.4:37462505-37462524	MS.gene68713:CDS	35.0%
ATCTATCTCACAAAACTGCT+GGG	+	chr2.4:37462314-37462333	MS.gene68713:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	37461351	37462813	37461351	ID=MS.gene68713
chr2.4	mRNA	37461351	37462813	37461351	ID=MS.gene68713.t1;Parent=MS.gene68713
chr2.4	exon	37461351	37461597	37461351	ID=MS.gene68713.t1.exon1;Parent=MS.gene68713.t1
chr2.4	CDS	37461351	37461597	37461351	ID=cds.MS.gene68713.t1;Parent=MS.gene68713.t1
chr2.4	exon	37461650	37462160	37461650	ID=MS.gene68713.t1.exon2;Parent=MS.gene68713.t1
chr2.4	CDS	37461650	37462160	37461650	ID=cds.MS.gene68713.t1;Parent=MS.gene68713.t1
chr2.4	exon	37462299	37462813	37462299	ID=MS.gene68713.t1.exon3;Parent=MS.gene68713.t1
chr2.4	CDS	37462299	37462813	37462299	ID=cds.MS.gene68713.t1;Parent=MS.gene68713.t1

Gene Sequence

>MS.gene68713

GAAGCCTCCTAGTATTGTTAAAAGTGTTCTGGGACCCACAGTTCCAACCAATTCAACCCTTGATTCGGGTTGGCCGCCTTTTAATGGAACCCGGGGAACTCACCGGCTTGGCGAGGTTGATCTCGCGTTTCTTACTTCTTACTCCATTGGCATGTATTTGGCTGGTCATGTTGGTGATAGGATTGATTTGAGGTTGTTTCTTGTGTTTGGGATGGTGGGCAGCGGTTTTTTTTACGATACTTTTTGGGTTAGGATACTGGTTTGATGTTCATGTGTTGGGGTTTTTTGTCGGTGTTCAGATTGTTTGTGGAGTGTTTCAGTCAATTGGGTGGCCTTGTGTTGTTGCAGTTGTTGGGAATTGGCTTGGGGAATCAAAGAGGGGATTGATAATGGGGATATGGAATTCGCATACCTCGGTTGGGAATATCATTGGTTCAGTTATTGCTTCGGGTGTTTTGGAATTTGGATGGGGTTGGTCGTTTGTGGTGCCTGGAATTTTGATCATTTTCATTGGGGTTTTGGTGTTTCTGTTTCTTGTTGTGAATCCCGTGGATATAGGGTTTGCGAGTCCTGGAATGGAAATTGAAATGAGTGTTGAAACGGGCGGTGCAGAGGATCTGCAGAAAGTCGAATCAGAGGAAGCAAAGCTAATTGATCCTGATAGTTCGATTTCAAATTCTTCGTCTGCTATTGGATTTTTAGAGGCGTGGAAAATACCTGGAGTCGCTCCGTTTGCTTTTTGTCTCTTTTTCTCAAAATTTGTTGCTTACACTTTCTTGTATTGGTTACCCTTCTACATAAGGCACACAGGTAATTGTTCTTTGATGCAAAAATATATCATATCTGATAGATTTATTGCATTGATTAAGCCATATCTTATTTAGTTTACATAATTTTCATGAATTATGATTTTTTTTTATTGAATTTGTTATTTTGTGTTGGTTGCAGCGGTTGCTGGTGTGAATCTATCTCACAAAACTGCTGGGTTACTTTCAACAATATTTGATATTGGAGGAGTTCTAGGCGGAATCACCGCCGGTTTCATTTCTGATATGATTGAAGCTCGCGCTGTGACTTCAATCCTGTTCTTGTTTCTATCGATTCCAGCTCTGCTTTTGTATCGTGCTTTCGGGAGCATCTCTATGTTTACTAACATCACCTTGATGTTTCTTTCTGGATTTTTGGTGAATGGTCCGTACTCGCTAATTACAACTGCTGTGGCTGCCGATCTCGGTACGCAGGGCTTTAGTGGTGGGAATTCTCGGGCACTGGCTACTGTTACTGCAATCATTGATGGTACTGGTTCTGTTGGAGCTGCTCTTGGACCACTTTTAGCAGGTTATGTTTCAACTAAGGGATGGAACAGTGTATTTTTTATGCTCGTTTCGTCTATTTTCTTTGCTGGTTTATTCTTGATTCGAGTTGCAAGGACTGAGATAAGAGAGAAGTTTTCAGGAAAGTGA

Protein sequence

>MS.gene68713.t1

EASUYCUKCSGTHSSNQFNPUFGLAAFUWNPGNSPAWRGUSRVSYFLLHWHVFGWSCWUUDUFEVVSCVWDGGQRFFLRYFLDCLWSVSVNWVALCCCSCWELAWGIKEGIDNGDMEFAYLGWEYHWFSYCFGCFGIWMGLVVCGAWNFDHFHWGFGVSVSCCESRGYRVCESWNGNUNECUNGRCRGSAESRIRGSKANUSUUFDFKFFVCYWIFRGVENTWSRSVCFLSLFLKICCLHFLVLVTLLHKAHSGCWCESISQNCWVTFNNIUYWRSSRRNHRRFHFUYDUSSRCDFNPVLVSIDSSSAFVSCFREHLYVYUHHLDVSFWIFGEWSVLANYNCCGCRSRYAGLUWWEFSGTGYCYCNHUWYWFCWSCSWTTFSRLCFNUGMEQCIFYARFVYFLCWFILDSSCKDUDKREVFRKV